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Phytoplankton distribution in macrotidal estuaries varies strongly due to highly dynamic conditions, contributing to the complexity of aquatic environments and marine ecosystems. Here the Changjiang River Estuary was analyzed as an example to explore this issue, based on field data collected through multiple cruises (including one covering a complete spring‐neap tidal cycle) and a fully coupled hydrodynamics‐sediment‐ecosystem numerical model. The composite analysis of all cruise data clearly showed that the chlorophyll concentrations were relatively low on lunar days 14–17 and 28–2, which corresponded to spring tides. Mechanistic analysis indicated that during spring tides, the river plume front retracts upstream with enhanced vertical mixing. This process restricts the transport of fluvial nutrients while increasing sediment resuspension, and therefore inhibiting net phytoplankton growth. During non‐spring tides, sediment resuspension was reduced but the river plume was further extended with slowed tidal currents, which enhanced the onshore light availability and offshore nutrient conditions and hence stimulated phytoplankton blooms in a larger area. The onshore shifting trend of the chlorophyll maximum region could last till the following neap tide with improved onshore light conditions and activate more conservative nutrients. The non‐conservation of nutrients augments the uncertainty of biomass variations during non‐spring periods. Besides in the spring‐neap tidal cycle, the phytoplankton variability between the perigean and apogean spring tides was also revealed. This study contributes to an improved understanding of intertidal variations of phytoplankton bloom and underlying physical‐sedimentological‐biological coupling mechanisms in tidal estuaries. Plain Language Summary: In macrotidal estuaries, the highly dynamic conditions lead to variations of phytoplankton distribution over multiple time scales, which prompts the complexity of aquatic environments and marine ecosystems. In this study, we explored the intertidal variability of phytoplankton adjacent to the Changjiang River Estuary through multiple observations and a fully coupled hydrodynamics‐sediment‐ecosystem numerical model. An inhibition of phytoplankton accumulation was observed during spring tide, especially during the perigean spring tide. The inhibition is altered during non‐spring tides due to the improvement of phytoplankton growth conditions. It also maintains an onshore shifting trend of chlorophyll maximum region from spring tide to neap tide. However, biomass variations remain uncertain due to the depletion of nutrients. This intertidal variability of phytoplankton is jointly determined by tide‐affected interactions between physical and biological processes. The results contribute to a better understanding of phytoplankton dynamics in global tidal estuaries. Key Points: Phytoplankton accumulation is inhibited during spring tides, especially during perigean spring tidesAn onshore extension trend of chlorophyll maximum regions could last from spring tides to neap tidesTide‐modulated biophysical interactions determine the intertidal variability of phytoplankton [ABSTRACT FROM AUTHOR]

Intratidal variability and flux of salt, chlorophyll-a and suspended materials were evaluated in a shallow tropical tidal channel linking a coastal lagoon to the western Gulf of Mexico. Velocity, temperature and conductivity were used to calculate the fluxes. Data were recorded during three tidal velocity cycles (tvc) under extreme river discharge conditions. Chlorophyll-a and suspended materials were determined below the surface. In both seasons (dry and rainy), the flow was ebb-dominated and with longer duration than when in flood. Maximum current velocities were 0.30 m s-1 in May (dry season) and 0.60 m s-1 in September (rainy season). In the dry season the mean chlorophyll-a export was of 7.56 Kg over tvc while the import was of 3.32 Kg. In the rainy season mean export (47.3 Kg) was 6 times greater than the import (7.93 Kg over tvc). Phytoplankton was dominated by organisms of marine origin. The mean of exported, suspended materials in the rainy season (111.3 Kg) was 4.6 times greater (859 Kg) than that in the dry season (184.7 Kg over tvc). Tidal velocity asymmetry is an effective mechanism of exportation, introducing relatively warm and saltier water into the river through the tidal channel.A variabilidade intramaré, o fluxo de salinidade, a clorofila-a e material em suspensão foram avaliados em um canal superficial de maré tropical em uma lagoa costeira ao oeste do Golfo do México. Os dados de velocidade, temperatura e condutividade foram usados para cálculo dos fluxos durante três ciclos de velocidades das marés (tvc) sob condições extremas de descarga. A Clorofila-a e material em suspensão foram determinados abaixo em subsuperfície. Em ambas as estações (seca e chuvosa), o fluxo dominante foi durante o refluxo e com duração maior durante o fluxo de entrada. A máxima velocidade encontrada foi 0.30 m s-1 em maio (estação seca) e 0.60 m s-1 em setembro (estação chuvosa). Durante a época seca foram exportadas 7.56 Kg de clorofila-a, enquanto a importação foi de 3.32 Kg. Durante a temporada de chuva a média exportada (47.3 Kg) foi seis vezes maior que a importada (7.93 Kg). A concentração media de material em suspensão exportado durante a época de chuvas (111.3 Kg) foi 4.6 vezes maior (859 Kg) que durante estação de seca (184.7 Kg). A assimetria das marés é um mecanismo efetivo de transporte, introduzindo no rio águas relativamente quentes e mais salinas através do canal de maré.

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