149 results on '"Ivankov Dmitry N"'
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2. Design of stable circular permutants of the GroEL chaperone apical domain
3. Rate of sequence divergence under constant selection
4. Protein folding problem: enigma, paradox, solution
5. Clarification to “Protein folding problem: enigma, paradox, solution”
6. RNAsselem: a Python Package for Descriptive Analysis of RNA Secondary Structure Elements in Viral Genomes
7. Two Views on the Protein Folding Puzzle
8. Energy Barrier for an Ion Crossing an Intra-Membrane Channel
9. Where to stop psi-BLAST iterations so that the found sequences remain related to the query sequence?
10. Design of stable circular permutants of the GroEL chaperone apical domain
11. In Silico Simulations Reveal Molecular Mechanism of Uranyl Ion Toxicity towards DNA-Binding Domain of PARP-1 Protein
12. There and back again: Two views on the protein folding puzzle
13. In-Frame Deletion of Dystrophin Exons 8–50 Results in DMD Phenotype
14. Using AlphaFold to predict the impact of single mutations on protein stability and function
15. Prediction of Protein Folding Rates from the Amino Acid Sequence-Predicted Secondary Structure
16. New mega dataset combined with deep neural network makes a progress in predicting impact of mutation on protein stability
17. A structural perspective of compensatory evolution
18. Protein Structure and Its Folding Rate
19. Local fitness landscape of the green fluorescent protein
20. Golden triangle for folding rates of globular proteins
21. Best templates outperform homology models in predicting the impact of mutations on protein stability
22. Composite mutations give an extra insight into epistasis
23. Using AlphaFold to predict the impact of single mutations on protein stability and function
24. Best templates outperform homology models in predicting the impact of mutations on protein stability
25. Inhibition of hyaluronan secretion by novel coumarin compounds and chitin synthesis inhibitors
26. QARIP: a web server for quantitative proteomic analysis of regulated intramembrane proteolysis
27. How many signal peptides are there in bacteria?
28. Theoretical study of a landscape of protein folding-unfolding pathways. Folding rates at midtransition
29. Solution of Levinthal’s Paradox and a Physical Theory of Protein Folding Times
30. KineticDB: a database of protein folding kinetics
31. HypercubeME: two hundred million combinatorially complete datasets from a single experiment
32. An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
33. Folding nuclei in proteins
34. Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation
35. Protein folding as flow across a network of folding-unfolding pathways. 2. the 'In-Water' case
36. Protein folding as flow across a network of folding-unfolding pathways. 1. The mid-transition case
37. Experimental assay of a fitness landscape on a macroevolutionary scale
38. Exact correspondence between walk in nucleotide and protein sequence spaces
39. HypercubeME: two hundred million combinatorially complete datasets from a single experiment.
40. Machine Learning: How Much Does It Tell about Protein Folding Rates?
41. Protein Structure and Its Folding Rate
42. Unexpected Diversity of Signal Peptides in Prokaryotes
43. Golden triangle for folding rates of globular proteins
44. Protein Folding as Flow across a Network of Folding−Unfolding Pathways. 2. The “In-Water” Case
45. Protein Folding as Flow across a Network of Folding−Unfolding Pathways. 1. The Mid-Transition Case
46. Rate of sequence divergence under constant selection
47. Coupling between Properties of the Protein Shape and the Rate of Protein Folding
48. COMPACTNESS DETERMINES PROTEIN FOLDING TYPE
49. More compact protein globules exhibit slower folding rates
50. Contact order revisited: Influence of protein size on the folding rate
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