1,740 results on '"J. Yamada"'
Search Results
2. Calculating flood probability in Obihiro using a probabilistic method: incorporating the probability of dike failure with uncertainty
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F. Uemura, G. Rongen, S. Masuya, T. Yoshida, and T. J. Yamada
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
In Japan, estimating flood risk follows a deterministic approach. A probabilistic risk method, as adapted in the Netherlands, would be better suited for the quantitative evaluation of flood damage. This study applies such a method in Obihiro, Hokkaido, northern island of Japan. We modelled dike failure with the mechanism overtopping. The probability of dike failure is calculated with a Monte Carlo simulation, considering uncertainties in water levels, critical flow velocity, and dike heights. This results in more accurate failure probabilities compared to the deterministic approach. Additionally, we corrected the dike failure probability for upstream dike failures because these reduce downstream water levels. This conditional flood probability is about 1/10th of the independent situation, indicating a significant effect of considering dike failure in dependence on upstream failures.
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- 2024
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3. A Method for Municipalities to Enhance Disaster Resilience for Potential Future Floods Using a Climate Projection Database
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A. Suzuki, F. Uemura, T. Hoshino, T. Yamamoto, and T. J. Yamada
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
Issuing appropriate evacuation information is a daunting task for municipalities during unprecedented heavy rainfalls. Due to their limited experience, they will encounter greater challenges in responding appropriately in future climate conditions, where the scale of floods will be greater. In this study, we proposed a method to make flood scenarios based on a climate projection database. We also developed an exercise method for municipalities to consider issuing evacuation information using the scenarios. Through a demonstration experiment in Hokkaido, Japan, we conducted a simulation exercise based on the method for a municipality. As a result, they considered specific response and provided valuable insights, thereby enhancing preparedness for potential future flood disaster.
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- 2024
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4. Meteorological characteristics of line-shaped rainbands in northern Japan and its surrounding seas under climate change
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Yuta Ohya and Tomohito J. Yamada
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climate change ,heavy rainfall ,line-shaped rainbands ,mesoscale ,northern japan ,self-organizing maps ,Information technology ,T58.5-58.64 ,Environmental technology. Sanitary engineering ,TD1-1066 - Abstract
In recent years, line-shaped rainbands (LRBs) have increased in Hokkaido, Japan. LRBs caused several flood disasters historically, thus the weather patterns that cause them need to be investigated. This study aimed to understand statistically the relationship between LRBs and weather patterns during the summer months under climate change conditions. Our study investigates the link between LRBs and weather patterns in Hokkaido during July and August, using historical and climate prediction models. With a 2°/4° global temperature rise, LRB occurrences in this region increase by approximately 1.51/2.07 times. The highest occurrences of LRBs correlate with increased water vapor flux from the south and positive pressure anomalies over the Pacific Ocean. Three main weather patterns contribute significantly to LRBs: (1) a nearby low-pressure system, (2) a strengthening Pacific High frontal pattern, and (3) approaching or landing typhoons in Hokkaido. These patterns double the LRB occurrence probability, a trait observed across past and projected climates (+2K and +4K experiments). These are important insights for future flood risk management. HIGHLIGHTS Integrative technical approach in hydroinformatics proposed for the first time.; The novel framework was introduced for the analysis of massive climate data.; Important new insights into line-shaped rainbands are provided.; Important insights into the effects of climate change are provided.; Significant enhancement in understanding summer meteorological fields contributing to heavy rainfall.;
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- 2024
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5. Multidisciplinary Treatment of Non-Spine Bone Metastases: Results of a Modified Delphi Consensus Process
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Erin F. Gillespie, Noah J. Mathis, Max Vaynrub, Ernesto Santos Martin, Rupesh Kotecha, Joseph Panoff, Andrew L. Salner, Alyson F. McIntosh, Ranju Gupta, Amitabh Gulati, Divya Yerramilli, Amy J. Xu, Meredith Bartelstein, David M. Guttmann, Yoshiya J. Yamada, Diana Lin, Kaitlyn Lapen, Deborah Korenstein, David G. Pfister, Allison Lipitz-Snyderman, and Jonathan T. Yang
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Bone Metastases ,Oligometastases ,SBRT ,Radiofrequency ablation ,Cryoablation ,Pathologic fracture ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Purpose: Local treatment for bone metastases is becoming increasingly complex. National guidelines traditionally focus only on radiation therapy (RT), leaving a gap in clinical decision support resources available to clinicians. The objective of this study was to reach expert consensus regarding multidisciplinary management of non-spine bone metastases, which would facilitate standardizing treatment within an academic-community partnership. Methods and Materials: A multidisciplinary panel of physicians treating metastatic disease across the Memorial Sloan Kettering (MSK) Cancer Alliance, including community-based partner sites, was convened. Clinical questions rated of high importance in the management of non-spine bone metastases were identified via survey. A literature review was conducted, and panel physicians drafted initial recommendation statements. Consensus was gathered on recommendation statements through a modified Delphi process from a full panel of 17 physicians from radiation oncology, orthopaedic surgery, medical oncology, interventional radiology, and anesthesia pain. Consensus was defined a priori as 75% of respondents indicating “agree” or “strongly agree” with the consensus statement. Strength of Recommendation Taxonomy was employed to assign evidence strength for each statement. Results: Seventeen clinical questions were identified, of which 11 (65%) were selected for the consensus process. Consensus was reached for 16 of 17 answer statements (94%), of which 12 were approved after Round 1 and additional 4 approved after Round 2 of the modified Delphi voting process. Topics included indications for referral to surgery or interventional radiology, radiation fractionation and appropriate use of stereotactic approaches, and the handling of systemic therapies during radiation. Evidence strength was most commonly C (n = 7), followed by B (n = 5) and A (n = 3). Conclusions: Consensus among a multidisciplinary panel of community and academic physicians treating non-spine bone metastases was feasible. Recommendations will assist clinicians and potentially provide measures to reduce variation across diverse practice settings. Findings highlight areas for further research such as pathologic fracture risk estimation, pre-operative radiation, and percutaneous ablation.
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- 2022
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6. Probability assessment of slope instability in seasonally cold regions under climate change
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Yulong Zhu, Tatsuya Ishikawa, Tomohito J. Yamada, and Srikrishnan Siva Subramanian
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Climate change ,Slope instability ,Seasonally cold regions ,Probability assessment ,Freeze-thaw action ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Abstract To semi-quantitatively assess the effects of climate change on the slope failures, this paper proposes an effective approach for evaluating the influences of climate change on slope stability in seasonally cold regions. To discuss climate change, this study firstly analyzes the trend of the two main climate factors (precipitation and air temperature) based on the regression analysis results of the meteorological monitoring data during the past 120 years in different scales (e.g., world, country (Japan), and city (Sapporo)), and the downscaled outputs of three different regional atmospheric models (RAMs) with lateral boundary conditions from three different general circulation models (GCMs). Next, to discuss the effects of different climate factors (air temperature, precipitation, etc.) and to determine the key climate factors on the slope instability, a slope stability assessment approach for evaluating the effects of climate changes on slope instability is proposed through the water content simulation and slope stability analysis with considering freeze-thaw action. Finally, to check the effectiveness of the above assessment approach, assessment of instability of an actual highway embankment slope with the local layer geometry is done by applying the past and predicted future climate data. The results indicate that affected by global warming, the air temperature rise in some cold cities is more serious. The climate changes (especially the increase in precipitation) in the future will increase the infiltration during the Spring season. It will lengthen the time that the highway slope is in an unstable state due to high volumetric water content, causing the occurrence of slope failures will be more concentrated in April. While during the Ssummer-Autumn period, the time domain of its occurrence will become wider.
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- 2021
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7. NF-kB decoy oligodeoxynucleotide preserves disc height in a rabbit anular-puncture model and reduces pain induction in a rat xenograft-radiculopathy model
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K Kato, K Akeda, S Miyazaki, J Yamada, C Muehleman, K Miyamoto, YA Asanuma, K Asanuma, T Fujiwara, ME Lenz, T Nakazawa, H An, and K Masuda
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intervertebral disc-repair/regeneration ,intervertebral disc-degeneration ,animal models-general ,nuclear factor-κb ,decoy ,intervertebral disc-histology ,intradiscal injection ,Diseases of the musculoskeletal system ,RC925-935 ,Orthopedic surgery ,RD701-811 - Abstract
While it is known that the degenerated intervertebral disc (IVD) is one of the primary reasons for low-back pain and subsequent need for medical care, there are currently no established effective methods for direct treatment. Nuclear factor-κB (NF-κB) is a transcription factor that regulates various genes’ expression, among which are inflammatory cytokines, in many tissues including the IVD. NF-κB decoy is an oligodeoxynucleotide containing the NF-κB binding site that entraps NF-κB subunits, resulting in suppression of NF-κB activity. In the present preclinical study, NF-κB decoy was injected into degenerated IVDs using the rabbit anular-puncture model. In terms of distribution, NF-κB decoy persisted in the IVDs up to at least 4 weeks after injection. The remaining amount of NF-κB decoy indicated that it fit a double-exponential-decay equation. Investigation of puncture-caused degeneration of IVDs showed that NF-κB decoy injection recovered, dose-dependently, the reduced disc height that was associated with reparative cell cloning and morphological changes, as assessed through histology. Gene expression, by quantitative real-time polymerase chain reaction (qRT-PCR), showed that NF-κB decoy attenuated inflammatory gene expression, such as that of interleukin-1 and tumor necrosis factor-α, in rabbit degenerated IVDs. NF-κB decoy also reduced the pain response as seen using the “pain sensor” nude rat xenograft-radiculopathy model. This is the first report demonstrating that NF-κB decoy suppresses the inflammatory response in degenerated IVDs and restores IVD disc height loss. Therefore, the intradiscal injection of NF-κB decoy may have the potential as an effective therapeutic strategy for discogenic pain associated with degenerated IVDs.
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- 2021
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8. Clinical Outcomes of Dose-Escalated Hypofractionated External Beam Radiation Therapy (5 Gy × 5 Fractions) for Spine Metastasis
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Jacob Y. Shin, MD, Noah J. Mathis, BS, Neil Ari Wijetunga, MD, PhD, Divya Yerramilli, MD, Daniel S. Higginson, MD, Adam M. Schmitt, MD, Daniel R. Gomez, MD, Yoshiya J. Yamada, MD, and Jonathan T. Yang, MD, PhD
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Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Purpose: The objective of this study was to determine the toxicities and outcomes of patients with spinal metastasis treated with external beam radiation therapy (EBRT) to 25 Gy in 5 fractions. Methods and Materials: Data were extracted from an institutional tumor registry for patients with spinal metastasis who were treated with EBRT to 25 Gy in 5 fractions to their spinal lesion(s). Cox regression and Kaplan-Meier analyses to determine local control and overall survival (OS) were employed. Results: Seventy-five patients with 86 total treated spinal metastatic tumors were identified. The median follow-up was 7 months. The median age was 66 years. Fifty-six patients (75.7%) experienced partial or complete pain relief for a median duration of 6 months (range, 1-33). Fifty-one (59.3%) cases were planned using intensity modulated radiation therapy while 19 (22.1%) employed 3-dimensional conformal radiation therapy and 16 (18.6%) cases used nonconformal radiation technique. Greater than 90% of cases had a point dose maximum to the spinal cord/cauda equina
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- 2022
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9. Development of a Generator System of Parameterized Questionnaires to Evaluate the Usability of Web Pages.
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William J. Yamada, Marcelo Morandini, Thiago Adriano Coleti, and Cinthyan Renata Sachs Camerlengo de Barbosa
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- 2019
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10. Using a massive high‐resolution ensemble climate data set to examine dynamic and thermodynamic aspects of heavy precipitation change
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Tomohito J. Yamada, Tsuyoshi Hoshino, and Akihiro Suzuki
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Clausius‐Clapeyron relation ,d4PDF ,dynamic ,dynamical downscaling ,ensemble data ,high resolution ,Meteorology. Climatology ,QC851-999 - Abstract
Abstract This study investigated the relationship between extreme precipitation and near‐surface temperature (precipitation–temperature relation) from two different perspectives, the rate of change of precipitation with temperature and dynamic (i.e., effect of the change in atmospheric motion) and thermodynamic (i.e., effect of the change in atmospheric moisture content) aspects, using a 5‐km dynamical downscaled hundreds‐year data set for past climate condition (PAST; from 1951 to 2010) and future climate condition (FUTURE; 4°C warmer than the preindustrial condition). Initially, using the observation and the PAST and FUTURE data sets, it was found that the 99th and 99.9th percentile hourly precipitation for each temperature bin (P99 and P99.9, respectively) paralleled the slope of the Clausius–Clapeyron (C–C) relation for a certain temperature range over the Tokachi River basin in Hokkaido, the northern island of Japan; however, both P99 and P99.9 decreased in the high‐temperature range. Next, we examined the cause of the P99 and P99.9 differences between PAST and FUTURE for each temperature bin by classifying dynamic and thermodynamic factors. The result showed that the thermodynamic effect dominates the differences in P99 and P99.9 between PAST and FUTURE, which means that the thermodynamic effect is the main component of the precipitation–temperature relation. Similar analyses were applied to the whole river basin, including the mountainous area. The results showed that the differences in P99 and P99.9 between PAST and FUTURE are mainly due to the thermodynamic contribution, regardless of plain or mountain area. Using such large model data sets, we could make a robust assessment of the precipitation–temperature relation and the dynamic and thermodynamic contributions to precipitation changes. Moreover, using the 5‐km resolution hundreds‐year data set enabled us to quantify the spatial distribution of such precipitation characteristics over a thousands of square kilometer catchment.
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- 2021
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11. Particulate Matter Concentrations over South Korea: Impact of Meteorology and Other Pollutants
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Shaik Allabakash, Sanghun Lim, Kyu-Soo Chong, and Tomohito J. Yamada
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air pollution ,generalized additive model ,multivariable linear regression model ,meteorology ,particulate matter ,transboundary air pollution ,Science - Abstract
Air pollution is a serious challenge in South Korea and worldwide, and negatively impacts human health and mortality rates. To assess air quality and the spatiotemporal characteristics of atmospheric particulate matter (PM), PM concentrations were compared with meteorological conditions and the concentrations of other airborne pollutants over South Korea from 2015 to 2020, using different linear and non-linear models such as linear regression, generalized additive, and multivariable linear regression models. The results showed that meteorological conditions played a significant role in the formation, transportation, and deposition of air pollutants. PM2.5 levels peaked in January, while PM10 levels peaked in April. Both were at their lowest levels in July. Further, PM2.5 was the highest during winter, followed by spring, autumn, and summer, whereas PM10 was the highest in spring followed by winter, autumn, and summer. PM concentrations were negatively correlated with temperature, relative humidity, and precipitation. Wind speed had an inverse relationship with air quality; zonal and vertical wind components were positively and negatively correlated with PM, respectively. Furthermore, CO, black carbon, SO2, and SO4 had a positive relationship with PM. The impact of transboundary air pollution on PM concentration in South Korea was also elucidated using air mass trajectories.
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- 2022
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12. Members of SIAMESE-RELATED Class Inhibitor Proteins of Cyclin-Dependent Kinase Retard G2 Progression and Increase Cell Size in Arabidopsis thaliana
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Kesuke J. Yamada, Hirotomo Takatsuka, Junya Hirota, Keto Mineta, Yuji Nomoto, and Masaki Ito
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cell size control ,cell cycle ,CDK inhibitor ,Arabidopsis thaliana ,transcriptional regulation ,transcription factor ,Science - Abstract
Cell size requires strict and flexible control as it significantly impacts plant growth and development. Unveiling the molecular mechanism underlying cell size control would provide fundamental insights into plants’ nature as sessile organisms. Recently, a GRAS family transcription factor SCARECROW-LIKE28 (SCL28) was identified as a determinant of cell size in plants; specifically, SCL28 directly induces a subset of SIAMESE-RELATED (SMR) family genes encoding plant-specific inhibitors of cyclin-dependent kinases (i.e., SMR1, SMR2, SMR6, SMR8, SMR9, SMR13, and SMR14), thereby slowing down G2 phase progression to provide the time to increase cell volume. Of the SMR genes regulated by SCL28, genetic analysis has demonstrated that SMR1, SMR2, and SMR13 cooperatively regulate the cell size downstream of SCL28 in roots and leaves, whereas other SMR members’ contribution remains unexplored. This study shows that in root meristematic cells, SMR9 redundantly participates in cell size control with SMR1, SMR2, and SMR13. Moreover, our cell cycle analysis provides the first experimental evidence that SMR proteins inhibit the G2 progression of proliferating cells. Overall, these findings illuminate the diverse yet overlapping roles of SMR proteins in cell cycle regulation while reinforcing that SMRs are essential downstream effectors of SCL28 to modulate G2 progression and cell size.
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- 2022
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13. Future Changes in Tropical and Extratropical Cyclones Affecting Hokkaido and Their Related Precipitation Based on Large-Ensemble Climate Simulations
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Sho Kawazoe, Masaru Inatsu, Tomohito J. Yamada, and Tsuyoshi Hoshino
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Atmospheric Science - Abstract
This study investigates the impact of future climate warming on tropical cyclones (TC) and extratropical cyclones (ETC) using the database for Policy Decision-Making for Future Climate Change (d4PDF) large ensemble simulations. Cyclone tracking was performed using the neighbor enclosed area tracking algorithm (NEAT), and TC and ETCs were identified over the western North Pacific Ocean (WNP). For cyclone frequency, it was revealed that, although a slight underestimation of the total number of TCs and ETCs in both the WNP and near Hokkaido, Japan, exists, the d4PDF reproduced the spatial distribution of both TC and ETC tracks well when compared with observations/reanalysis. The 4-K warming scenarios derived from six different sea surface temperature warming patterns showed robust decreases in TC frequency in the tropical WNP and a slight reduction in ETCs near Japan. Next, precipitation characteristics for TCs or ETCs in the vicinity of Hokkaido were examined using 5-km-mesh regional climate ensemble simulations. Four representative cyclone locations near Hokkaido are identified using K-means clustering and revealed distinct precipitation characteristics between clusters, with higher TC-associated precipitation than ETC-associated precipitation and the heaviest precipitation in the southern portion of the prefecture. The 4-K warming scenarios revealed increased precipitation for all cyclone placements for both TCs and ETCs. Last, average cyclone intensity, translation speed, and size were examined. It was shown that TCs in future climates are more intense, propagate more slowly, and are smaller in terms of enclosed vorticity area as they approach Hokkaido. For ETCs, mean intensity does not change much; they travel slightly faster, and become smaller.
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- 2023
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14. Monocyte metabolic reprogramming promotes pro-inflammatory activity and Staphylococcus aureus biofilm clearance.
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Kelsey J Yamada, Cortney E Heim, Xinyuan Xi, Kuldeep S Attri, Dezhen Wang, Wenting Zhang, Pankaj K Singh, Tatiana K Bronich, and Tammy Kielian
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Biofilm-associated prosthetic joint infections (PJIs) cause significant morbidity due to their recalcitrance to immune-mediated clearance and antibiotics, with Staphylococcus aureus (S. aureus) among the most prevalent pathogens. We previously demonstrated that S. aureus biofilm-associated monocytes are polarized to an anti-inflammatory phenotype and the adoptive transfer of pro-inflammatory macrophages attenuated biofilm burden, highlighting the critical role of monocyte/macrophage inflammatory status in dictating biofilm persistence. The inflammatory properties of leukocytes are linked to their metabolic state, and here we demonstrate that biofilm-associated monocytes exhibit a metabolic bias favoring oxidative phosphorylation (OxPhos) and less aerobic glycolysis to facilitate their anti-inflammatory activity and biofilm persistence. To shift monocyte metabolism in vivo and reprogram cells to a pro-inflammatory state, a nanoparticle approach was utilized to deliver the OxPhos inhibitor oligomycin to monocytes. Using a mouse model of S. aureus PJI, oligomycin nanoparticles were preferentially internalized by monocytes, which significantly reduced S. aureus biofilm burden by altering metabolism and promoting the pro-inflammatory properties of infiltrating monocytes as revealed by metabolomics and RT-qPCR, respectively. Injection of oligomycin alone had no effect on monocyte metabolism or biofilm burden, establishing that intracellular delivery of oligomycin is required to reprogram monocyte metabolic activity and that oligomycin lacks antibacterial activity against S. aureus biofilms. Remarkably, monocyte metabolic reprogramming with oligomycin nanoparticles was effective at clearing established biofilms in combination with systemic antibiotics. These findings suggest that metabolic reprogramming of biofilm-associated monocytes may represent a novel therapeutic approach for PJI.
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- 2020
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15. A nonlinear filter based on fokker-planck equation and its application on rainfall-runoff analysis.
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Daiwei Cheng, Yoshimasa Morooka, Tadashi Yamada, and Tomohito J. Yamada
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- 2016
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16. Modeling large-scale human alteration of land surface hydrology and climate
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Yadu N. Pokhrel, Farshid Felfelani, Sanghoon Shin, Tomohito J. Yamada, and Yusuke Satoh
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Hydrology ,Climate ,Human impacts ,Modeling ,Science ,Geology ,QE1-996.5 - Abstract
Abstract Rapidly expanding human activities have profoundly affected various biophysical and biogeochemical processes of the Earth system over a broad range of scales, and freshwater systems are now amongst the most extensively altered ecosystems. In this study, we examine the human-induced changes in land surface water and energy balances and the associated climate impacts using a coupled hydrological–climate model framework which also simulates the impacts of human activities on the water cycle. We present three sets of analyses using the results from two model versions—one with and the other without considering human activities; both versions are run in offline and coupled mode resulting in a series of four experiments in total. First, we examine climate and human-induced changes in regional water balance focusing on the widely debated issue of the desiccation of the Aral Sea in central Asia. Then, we discuss the changes in surface temperature as a result of changes in land surface energy balance due to irrigation over global and regional scales. Finally, we examine the global and regional climate impacts of increased atmospheric water vapor content due to irrigation. Results indicate that the direct anthropogenic alteration of river flow in the Aral Sea basin resulted in the loss of ~510 km3 of water during the latter half of the twentieth century which explains about half of the total loss of water from the sea. Results of irrigation-induced changes in surface energy balance suggest a significant surface cooling of up to 3.3 K over 1° grids in highly irrigated areas but a negligible change in land surface temperature when averaged over sufficiently large global regions. Results from the coupled model indicate a substantial change in 2 m air temperature and outgoing longwave radiation due to irrigation, highlighting the non-local (regional and global) implications of irrigation. These results provide important insights on the direct human alteration of land surface water and energy balances, highlighting the need to incorporate human activities such as irrigation into the framework of global climate models and Earth system models for better prediction of future changes under increasing human influence and continuing global climate change.
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- 2017
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17. Land-sea thermal contrast associated with summer monsoon onset over the Chao Phraya River basin
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Tomohito J. Yamada, Sourabh Shrivastava, and Ryosuke Kato
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Atmospheric Science - Abstract
Earlier onset of the Southeast Asian summer monsoon (SAM) was observed over the Chao Phraya River basin in Thailand using Thai Meteorological Department-derived high-resolution merged rainfall data from 1981 to 2016. SAM variability depends on numerous local and global factors, including thermal conditions over the Bay of Bengal (BoB) and Tibetan Plateau (TbT). Despite tremendous past research efforts, the effect of thermal heat contrast on the SAM remains unclear. Using observational and reanalysis datasets, we found that the absolute value of total heat over the BoB was increasing. However, the interannual variability of total heat was greater over the TbT. Changes in surface temperature (± 1.5 °C), air thickness (± 20 m), and geopotential height over the TbT were associated with the timing of SAM onset. The results also suggested that significant changes in air thickness are driven by surface temperature differences over the TbT, while changes in the integrated apparent heat source and integrated apparent moisture sink of ± 100 W m−2 resulted in anomalous convective activities over the BoB and mainland of the Indochina Peninsula in years of early and late SAM onset. At the intraseasonal timescale, Madden–Julian oscillation (MJO) was observed over the Indian Ocean and Western Hemisphere for 4–10 days in years of early SAM onset. The opposite situation was found for years of late SAM onset, with MJO located over the Western Pacific Ocean and Maritime Continent.
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- 2022
18. Protease-Mediated Growth of Staphylococcus aureus on Host Proteins Is opp3 Dependent
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McKenzie K. Lehman, Austin S. Nuxoll, Kelsey J. Yamada, Tammy Kielian, Steven D. Carson, and Paul D. Fey
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Staphylococcus aureus ,amino acid catabolism ,metabolism ,proteases ,Microbiology ,QR1-502 - Abstract
ABSTRACT Staphylococcus aureus has the ability to cause infections in multiple organ systems, suggesting an ability to rapidly adapt to changing carbon and nitrogen sources. Although there is little information about the nutrients available at specific sites of infection, a mature skin abscess has been characterized as glucose depleted, indicating that peptides and free amino acids are an important source of nutrients for the bacteria. Our studies have found that mutations in enzymes necessary for growth on amino acids, including pyruvate carboxykinase (ΔpckA) and glutamate dehydrogenase (ΔgudB), reduced the ability of the bacteria to proliferate within a skin abscess, suggesting that peptides and free amino acids are important for S. aureus growth. Furthermore, we found that collagen, an abundant host protein that is present throughout a skin abscess, serves as a reservoir of peptides. To liberate peptides from the collagen, we identified that the host protease, MMP-9, as well as the staphylococcal proteases aureolysin and staphopain B function to cleave collagen into peptide fragments that can support S. aureus growth under nutrient-limited conditions. Moreover, the oligopeptide transporter Opp3 is the primary staphylococcal transporter responsible for peptide acquisition. Lastly, we observed that the presence of peptides (3-mer to 7-mer) induces the expression of aureolysin, suggesting that S. aureus has the ability to detect peptides in the environment. IMPORTANCE Staphylococcus aureus has the ability to cause infections in a variety of niches, suggesting a robust metabolic capacity facilitating proliferation under various nutrient conditions. The mature skin abscess is glucose depleted, indicating that peptides and free amino acids are important sources of nutrients for S. aureus. Our studies have found that mutations in both pyruvate carboxykinase and glutamate dehydrogenase, enzymes that function in essential gluconeogenesis reactions when amino acids serve as the major carbon source, reduce bacterial burden in a murine skin abscess model. Moreover, peptides liberated from collagen by host protease MMP-9 as well as the staphylococcal protease aureolysin support S. aureus growth in an Opp3-dependent manner under nutrient-limited conditions. Additionally, the presence of peptides induces aureolysin expression. Overall, these studies define one pathway by which S. aureus senses a nutrient-limiting environment and induces factors that function to acquire and utilize carbon from host-derived sources.
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- 2019
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19. Characteristics of Rain and Sea Spray Droplet Size Distribution at a Marine Tower
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Hiroki Okachi, Tomohito J. Yamada, Yasuyuki Baba, and Teruhiro Kubo
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rain drop ,sea spray ,size distribution ,marine observation ,extreme weather event ,Meteorology. Climatology ,QC851-999 - Abstract
The effects of sea spray on open-ocean rainfall measurements-the drop size distribution (DSD) and rainfall intensities-were studied using a state-of-the-art optical disdrometer. The number of rain droplets less than 1 mm in diameter is affected by several factors, including the type of rainfall and seasonality. Over the ocean, small rain and large sea spray droplets co-exist in the same diameter size class (0.072 to 1000 mm); hence, sea spray creates uncertainty when seeking to characterize the drop size distribution (DSD) of rain droplets over the ocean. We measured droplet sizes at a marine tower using a state-of-the-art optical disdrometer, a tipping-bucket rain gauge, a wind anemometer, and a time-lapse camera, over a period that included typhoon Krosa of 2019. The number of rain droplets of diameter less than 1 mm increased monotonically as the horizontal wind speed became stronger. Thus, the shape parameter μ of the Ulbrich distribution decreased. This decreasing trend can be recognized as an increase in sea spray. During no-rainfall hours (indicated by rain gauges on the ocean tower and nearby land), sea spray DSDs were obtained at various horizontal wind speeds. Furthermore, the proportions of sea spray to rainfall at different rainfall intensities and horizontal wind speeds were determined; at a horizontal wind speed of 16 to 20 m s−1, the average sea spray proportions were 82.7%, 19.1%, and 5.3% during total rainfall periods of 2.1 mm h−1, 8.9 mm h−1, and 32.1 mm h−1, respectively. Representation of sea spray DSDs, as well as rainfall DSDs, is a key element of calculating real rainfall intensities over the open ocean.
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- 2020
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20. Urease is an essential component of the acid response network of Staphylococcus aureus and is required for a persistent murine kidney infection.
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Chunyi Zhou, Fatema Bhinderwala, McKenzie K Lehman, Vinai C Thomas, Sujata S Chaudhari, Kelsey J Yamada, Kirk W Foster, Robert Powers, Tammy Kielian, and Paul D Fey
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Staphylococcus aureus causes acute and chronic infections resulting in significant morbidity. Urease, an enzyme that generates NH3 and CO2 from urea, is key to pH homeostasis in bacterial pathogens under acidic stress and nitrogen limitation. However, the function of urease in S. aureus niche colonization and nitrogen metabolism has not been extensively studied. We discovered that urease is essential for pH homeostasis and viability in urea-rich environments under weak acid stress. The regulation of urease transcription by CcpA, Agr, and CodY was identified in this study, implying a complex network that controls urease expression in response to changes in metabolic flux. In addition, it was determined that the endogenous urea derived from arginine is not a significant contributor to the intracellular nitrogen pool in non-acidic conditions. Furthermore, we found that during a murine chronic renal infection, urease facilitates S. aureus persistence by promoting bacterial fitness in the low-pH, urea-rich kidney. Overall, our study establishes that urease in S. aureus is not only a primary component of the acid response network but also an important factor required for persistent murine renal infections.
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- 2019
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21. Influence of the Long-Term Temperature Trend on the Number of New Records for Annual Maximum Daily Precipitation in Japan
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Tomohito J. Yamada, Chhay Ngorn Seang, and Tsuyoshi Hoshino
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annual maximum precipitation intensity ,number of new records ,climate change ,sampling number theory ,Clausius–Clapeyron relation ,Japan ,Meteorology. Climatology ,QC851-999 - Abstract
Record-breaking precipitation events have been frequent in Japan in recent years. To investigate the statistical characteristics of the frequency of record-breaking events, observations can be compared with the values derived from sampling theory with a stationary state. This study counted the number of record-breaking daily and 3-day total precipitation events at 58 rain-gauge stations in Japan between 1901 and 2018. The average number of record-breaking events over the 118-year period was 5.9 for daily total precipitation, which is larger than the theoretical value of 5.4 derived using the assumption that the climate system over the same period was stationary. Sampling theory was used to incorporate the influence of the long-term temperature trend from the Clausius–Clapeyron relation associated with the saturation vapor pressure. In theory, the long-term temperature trend gives a similar number of observed record-breaking events when the long-term temperature trend is approximately 0.5 Kelvin/100 years.
- Published
- 2020
- Full Text
- View/download PDF
22. Evaluation for Characteristics of Tropical Cyclone Induced Heavy Rainfall over the Sub-basins in The Central Hokkaido, Northern Japan by 5-km Large Ensemble Experiments
- Author
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Tsuyoshi Hoshino, Tomohito J. Yamada, and Hiroaki Kawase
- Subjects
heavy rainfall ,tropical cyclone ,climate change ,large ensemble climate experiment ,d4PDF ,Meteorology. Climatology ,QC851-999 - Abstract
Previous studies have shown that the acceleration of global warming will increase the intensity of rainfall induced by tropical cyclones (TCs) (hereinafter referred to as “TC-induced rainfall”). TC-induced rainfall is affected by TC position and topography (slope shape and direction). Thus, TC-induced rainfall is expected to vary by sub-basin due to varying topographies. However, these relationships have not been explained, as historical TCs, which occurred several decades earlier, do not exhaustively encompass all TC positions that could potentially affect each basin. We used large ensemble regional climate model experiments with 5 km grid spacing, which enabled us to prepare a huge TC database for understanding the characteristics of TC-induced rainfall over sub-basins. We quantified the characteristics of TC-induced rainfall (rainfall volume, relationship between TC position and rainfall intensity, and contribution of TC intensity on rainfall) over four sub-basins in the Tokachi River basin, central Hokkaido, northern Japan. The results reveal differences in TC-induced rainfall characteristics between the sub-basins. In addition, the large ensemble data under a future climate scenario were used to evaluate future changes in the characteristics of TC-induced rainfall for each sub-basin.
- Published
- 2020
- Full Text
- View/download PDF
23. EVALUATION OF HEAVY RAINFALL RISK OF TYPHOON HAGIBIS (2019) ASSOCIATED WITH TYPHOON TRACK
- Author
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Tsuyoshi HOSHINO, Hiroki OKACHI, Yui TAKEHARA, and Tomohito J. YAMADA
- Subjects
Environmental Engineering ,Civil and Structural Engineering - Published
- 2022
- Full Text
- View/download PDF
24. Hydrological frequency analysis of large-ensemble climate simulation data using control density as a statistical control
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Tomohito J. Yamada, Daiwei Cheng, and Keita Shimizu
- Subjects
Frequency analysis ,Meteorology ,hydrological frequency analysis ,probability limit method ,Statistical process control ,ensemble climate data ,law.invention ,climate change ,law ,Earth and Planetary Sciences (miscellaneous) ,Environmental science ,Control (linguistics) ,Climate simulation ,Water Science and Technology ,control density distribution - Abstract
Uncertainty in hydrological statistics estimated with finite observations, such as design rainfall, can be quantified as a confidence interval using statistical theory. Ensemble climate data also enables derivation of a confidence interval. Recently, the database for policy decision making for future climate change (d4PDF) was developed in Japan, which contains dozens of simulated extreme rain-fall events for the past and 60 years into the future, allowing the uncertainty of design rainfall to be quantified as a confidence interval. This study applies an order statistics distribution to evaluate uncertainty in the order statistics of extreme rainfall from the perspective of mathematical theory, while a confidence interval is used for uncertainty evaluation in the probability distribution itself. An advantage of the introduction of an order statistics distribution is that it can be used to quantify the goodness-of-fit between observation and ensemble climate data under the condition that the extreme value distribution estimated from observations is a true distribution. The order statistics distribution is called the control density distribution, which is derived from characteristics that order statistics from standard uniform distribution follows beta distribution. The overlap ratio of the control density distribution and frequency distributions derived from ensemble climate data is utilized for evaluation of the degree of goodness-of-fit for both data.
- Published
- 2021
25. Safety of spinal anesthesia in pregnant vaccinated with one or two doses of the BNT162b2 vaccine: A retrospective observational cohort study
- Author
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Eduardo J. Yamada, Gabriel dS. Petró, Guilherme B. Rohden, Clandio T. Marques, Alexandre V. Schwarzbold, and Dirce S. Backes
- Subjects
Medical–Surgical Nursing ,Anesthesiology and Pain Medicine ,Surgery ,Critical Care and Intensive Care Medicine - Published
- 2023
- Full Text
- View/download PDF
26. Simulating Flash Floods Using Geostationary Satellite-Based Rainfall Estimation Coupled with a Land Surface Model
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Dwi Prabowo Yuga Suseno and Tomohito J. Yamada
- Subjects
mtsat ,lsm ,heavy rainfall ,flash flood ,Science - Abstract
Clarifying hydrologic behavior, especially behavior related to extreme events such as flash floods, is vital for flood mitigation and management. However, discharge and rainfall measurement data are scarce, which is a major obstacle to flood mitigation. This study: (i) simulated flash floods on a regional scale using three types of rainfall forcing implemented in a land surface model; and (ii) evaluated and compared simulated flash floods with the observed discharge. The three types of rainfall forcing were those observed by the Automated Meteorological Data Acquisition System (AMeDAS) (Simulation I), the observed rainfall from the Ministry of Land, Infrastructure and Transportation (MLIT) (Simulation II), and the estimated rainfall from the Multi-purpose Transport Satellite (MTSAT), which was downscaled by AMeDAS rainfall (Simulation III). MLIT rainfall observations have a denser station network over the Ishikari River basin (spacing of approximately 10 km) compared with AMeDAS (spacing of approximately 20 km), so they are expected to capture the rainfall spatial distribution more accurately. A land surface model, the Minimal Advance Treatments of Surface Interaction and Runoff (MATSIRO), was implemented for the flash flood simulation. The river flow simulations were run over the Ishikari river basin at a 1-km grid resolution and a 1-h temporal resolution during August 2010. The statistical performance of the river flow simulations during a flash flood event on 23 and 24 August 2010 demonstrated that Simulation I was reasonable compared with Simulation III. The findings also suggest that the advantages of the MTSAT-based estimated rainfall (i.e., good spatial distribution) can be coupled with the benefit of direct AMeDAS observations (i.e., representation of the true rainfall).
- Published
- 2020
- Full Text
- View/download PDF
27. Effect of Human-Induced Land Disturbance on Subseasonal Predictability of Near-Surface Variables Using an Atmospheric General Circulation Model
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Tomohito J. Yamada and Yadu Pokhrel
- Subjects
irrigation ,subseasonal forecast ,agcm ,land surface model ,Meteorology. Climatology ,QC851-999 - Abstract
Irrigation can affect climate and weather patterns from regional to global scales through the alteration of surface water and energy balances. Here, we couple a land-surface model (LSM) that includes various human land-water management activities including irrigation with an atmospheric general circulation model (AGCM) to examine the impacts of irrigation-induced land disturbance on the subseasonal predictability of near-surface variables. Results indicate that the simulated global irrigation and groundwater withdrawals (circa 2000) are ~3600 and ~370 km3/year, respectively, which are in good agreement with previous estimates from country statistics and offline−LSMs. Subseasonal predictions for boreal summers during the 1986−1995 period suggest that the spread among ensemble simulations of air temperature can be substantially reduced by using realistic land initializations considering irrigation-induced changes in soil moisture. Additionally, it is found that the subseasonal forecast skill for near-surface temperature and sea level pressure significantly improves when human-induced land disturbance is accounted for in the AGCM. These results underscore the need to incorporate irrigation into weather forecast models, such as the global forecast system.
- Published
- 2019
- Full Text
- View/download PDF
28. Land-sea Thermal Contrast in Relation With Summer Monsoon Onset Over the Chao Phraya River Basin
- Author
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Tomohito J. Yamada, Sourabh Shrivastava, and Ryosuke Kato
- Abstract
An earlier onset of the Southeast Asian summer monsoon (SAM) was observed over the Chao Phraya River basin in Thailand using Thai Meteorological Department (TMD)-derived high-resolution merged rainfall from 1981 to 2016. As the SAM is precipitous, its variability depends on many local and global factors, such as thermal conditions over the Bay of Bengal (BoB) and Tibetan Plateau (TbT). Despite tremendous studies in the past, the role of thermal heat contrast over SAM is still not fully understood. Using the observation and reanalysis datasets, it was found that the absolute value of total heat over the BoB was higher. However, the interannual variability in total heat is higher over the TbT. Significant changes in surface temperature (±1.5°C), air thickness (±20 meters) and geopotential height found over the TbT were associated with early (late) SAM onset. The results also suggested that the significant changes in air thickness were influenced by the surface temperature difference over the TbT, and the changes in the integrated apparent heat source and integrated apparent moisture sink were up to ± 100 Wm−2, which resulted in stronger (weaker) convective activities over the BoB and mainland of the Indochina Peninsula during early (late) SAM onset. At the intraseasonal timescale, the instance MJO found over the Indian Ocean and Western Hemisphere at 4 to 10 days span during early SAM onset. An opposite scenario is found for a late SAM onset years with MJO location over Western Pacific and Maritime continent.
- Published
- 2022
- Full Text
- View/download PDF
29. Using a massive high‐resolution ensemble climate data set to examine dynamic and thermodynamic aspects of heavy precipitation change
- Author
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Akihiro Suzuki, Tsuyoshi Hoshino, and Tomohito J. Yamada
- Subjects
Atmospheric Science ,dynamic ,Hokkaido ,high resolution ,ensemble data ,High resolution ,Clausius‐Clapeyron relation ,precipitation ,dynamical downscaling ,Clausius-Clapeyron relation ,Data set ,thermodynamic ,d4PDF ,Japan ,Clausius–Clapeyron relation ,Climatology ,Meteorology. Climatology ,Environmental science ,Precipitation ,QC851-999 ,Downscaling - Abstract
This study investigated the relationship between extreme precipitation and near-surface temperature (precipitation-temperature relation) from two different perspectives, the rate of change of precipitation with temperature and dynamic (i.e., effect of the change in atmospheric motion) and thermodynamic (i.e., effect of the change in atmospheric moisture content) aspects, using a 5-km dynamical downscaled hundreds-year data set for past climate condition (PAST; from 1951 to 2010) and future climate condition (FUTURE; 4 degrees C warmer than the preindustrial condition). Initially, using the observation and the PAST and FUTURE data sets, it was found that the 99th and 99.9th percentile hourly precipitation for each temperature bin (P-99 and P-99.9, respectively) paralleled the slope of the Clausius-Clapeyron (C-C) relation for a certain temperature range over the Tokachi River basin in Hokkaido, the northern island of Japan; however, both P-99 and P-99.9 decreased in the high-temperature range. Next, we examined the cause of the P-99 and P-99.9 differences between PAST and FUTURE for each temperature bin by classifying dynamic and thermodynamic factors. The result showed that the thermodynamic effect dominates the differences in P-99 and P-99.9 between PAST and FUTURE, which means that the thermodynamic effect is the main component of the precipitation-temperature relation. Similar analyses were applied to the whole river basin, including the mountainous area. The results showed that the differences in P-99 and P-99.9 between PAST and FUTURE are mainly due to the thermodynamic contribution, regardless of plain or mountain area. Using such large model data sets, we could make a robust assessment of the precipitation-temperature relation and the dynamic and thermodynamic contributions to precipitation changes. Moreover, using the 5-km resolution hundreds-year data set enabled us to quantify the spatial distribution of such precipitation characteristics over a thousands of square kilometer catchment.
- Published
- 2021
30. Characteristics of line-shaped rainbands regarding duration, shape, and rainfall intensity in northern Japan using the Radar/Raingauge-Analyzed Precipitation Product
- Author
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Yuta Ohya and Tomohito J Yamada
- Subjects
General Medicine ,General Chemistry - Abstract
Line-shaped rainbands (LRBs), including Mesoscale Convective Systems (MCSs), stagnate on river basins and cause floods and landslides. Moreover, the frequency of LRBs is increasing around Hokkaido a part of northern Japan. Due to the complexity of the three-dimensional structures found in LRBs, some research dealt with two-dimensional observation data to identify them for the sake of simplicity. In previous studies, several methods to widely identify LRBs from radar rainfall data in terms of rainfall intensity, shape of rainfall area, and duration have been proposed. However, using the nationally consistent definition, the number of LRBs occurring in this region would be evaluated as very few due to the little rainfall climatology of this area. In this study, based on the previous studies, we adjust many combinations of threshold values, such as rainfall intensity, aspect ratio, and time duration in order to verify of validity the LRBs that occurred in northern Japan. The authors visually identified the six LRBs that caused the disaster and showed thresholds at which they were mechanically extractable by a computer program. The combination of thresholds that included at least six of those disaster-scale cases was “a rainfall area defined by a closed curve with a previous 3-hour rainfall of 40 mm or more, stagnating for 2 hours or more (covering 40% or more of its area), and with a maximum aspect ratio of 2.5 or more.”
- Published
- 2023
- Full Text
- View/download PDF
31. Changes in sediment erosion rate in the Azuma River basin after the Hokkaido eastern Iburi earthquake in 2018
- Author
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Kotaro Miyazaki, Tsuyoshi Hoshino, Keita Shimizu, Sourabh Shrivastava, and Tomohito J Yamada
- Subjects
General Medicine ,General Chemistry - Abstract
The Hokkaido Eastern Iburi earthquake in 2018 induced the largest landslide over the Azuma River basin in Hokkaido, the north island of Japan. This study estimated the sediment erosion rate over the Azuma River basin using the universal soil loss equation (USLE) for the pre- and post-earthquake conditions. The results showed that the potential sediment erosion rate from the entire basin increased by 8–29 times more than the pre-earthquake condition. The primary cause of the increase in sediment erosion rate was deforestation due to the landslide, which generated 13% of the bare land area in the entire basin. In addition, the influence of interannual variability of rainfall on sediment erosion rate was calculated from observed rainfall data. As a result, the minimum annual sediment erosion rate after the earthquake exceeded the maximum before the earthquake, indicating that the post-earthquake sediment erosion rate is substantially higher than the pre-earthquake rate. These findings suggest that in order to assess the sediment erosion risk over the Azuma River basin, it is necessary to predict and monitor the vegetation recovery, considering the interannual variability of rainfall.
- Published
- 2023
- Full Text
- View/download PDF
32. Points of consideration on identification of the atmospheric fronts depicted on weather charts
- Author
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Maki Miyamoto and Tomohito J. Yamada
- Subjects
General Medicine ,General Chemistry - Abstract
Atmospheric fronts play an important role on the day-to-day variation of rainfall in Japan, North-western Pacific. They are defined as a discrepancy of air density and have been depicted on surface weather charts for more than 100 years by Japan Meteorological Agency (JMA). This study develops an approach to detect fronts from the charts published from 1978 to 2020 and investigates how detected fronts could be utilized. The fronts which are depicted on the charts might have a diverse physical characteristic in each age. One of factors is a difference in how to represent fronts. The difference also prevents from detecting fronts under a certain accuracy. Previous study demonstrates detecting fronts based on the color available from the charts. However, this approach is applicable for weather charts published after 2000 by JMA. This paper describes consideration points for a unified detection of fronts from the charts for 43 years in detail. Furthermore, we compare fronts detected by several methods and discuss a spatial scale in which their differences could be neglected.
- Published
- 2023
- Full Text
- View/download PDF
33. Effect of Ga and Cd substitutions on the first-order antiferromagnetic transition in NdCo2Zn20
- Author
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Yasuyuki Shimura, Kazunori Umeo, Rikako Yamamoto, Toshiro Takabatake, Takahiro Onimaru, Yu Yamane, and Reiji J. Yamada
- Subjects
Physics ,Crystallography ,Specific heat ,Electrical resistivity and conductivity ,Atomic force microscopy ,Isothermal magnetization ,Electron doping ,Antiferromagnetism ,First order ,Magnetic susceptibility - Abstract
The cubic neodymium-based compound ${\mathrm{NdCo}}_{2}{\mathrm{Zn}}_{20}$ exhibits a first-order antiferromagnetic (AFM) transition at ${T}_{\text{N}}=0.53$ K. Strong magnetic fluctuations at temperatures up to 5 K were suggested by the downward curvature of the electrical resistivity $\ensuremath{\rho}(T)$ and the reduced magnetic entropy ${S}_{\text{m}}$ of $0.5R\mathrm{ln}2$ at ${T}_{\text{N}}$. In this study, we measured $\ensuremath{\rho}(T)$, the isothermal magnetization $M(B)$, magnetic susceptibility $\ensuremath{\chi}(T)$, and specific heat $C(T)$ of ${\mathrm{NdCo}}_{2}{\mathrm{Zn}}_{20\ensuremath{-}x}{\mathrm{Cd}}_{x}$ for $x=1$ and ${\mathrm{NdCo}}_{2}{\mathrm{Zn}}_{20\ensuremath{-}y}{\mathrm{Ga}}_{y}$ for $y=1$ and 2. The sharp peak of the magnetic specific heat ${C}_{\text{m}}(T)$ at ${T}_{\text{N}}$ for $x$ = 0 is changed to a weak and broad maximum at 0.55 K for $x$ = 1. This drastic change in ${C}_{\text{m}}(T)$ suggests that the isovalent Cd substitution for Zn disorders the exchange interactions between the Nd moments to hinder the first-order AFM transition. On the other hand, ${C}_{\text{m}}(T)$ for $y=1$ and 2 exhibits a lambda-shaped anomaly, which is a characteristic of a second-order AFM transition, at elevated temperatures of 0.78 and 1.5 K, respectively. The stabilization of the AFM order by the Ga substitution indicates that $4p$ electron doping strengthens the AFM interaction. We therefore propose that the first-order transition in ${\mathrm{NdCo}}_{2}{\mathrm{Zn}}_{20}$ is maintained by competitive magnetic interactions inherent in the Nd diamond sublattice.
- Published
- 2021
- Full Text
- View/download PDF
34. SPECIAL ISSUE ON THE STORM AND FLOOD DAMAGE 2019 IN JAPAN
- Author
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Hiroyuki Sakakibara, Satoshi Nishimura, Tomohito J. Yamada, Hiromune Yokoki, Shinichiro Onda, Shinta Seto, Yoshinori Shigihara, Tatsuhiko Uchida, Chikako Fujiyama, Taichi Tebakari, Satoshi Yokojima, and Yoshihisa Akamatsu
- Subjects
Hydrology ,Flood myth ,Environmental science ,Storm - Published
- 2020
- Full Text
- View/download PDF
35. Assessing climate change impacts on extreme rainfall and severe flooding during the summer monsoon season in the Ishikari River basin, Japan
- Author
-
Tomohito J. Yamada, Makoto Nakatsugawa, Thu Thanh Nguyen, and Tsuyoshi Hoshino
- Subjects
Hydrology ,geography ,geography.geographical_feature_category ,Summer monsoon season ,Flooding (psychology) ,Earth and Planetary Sciences (miscellaneous) ,Drainage basin ,Environmental science ,Climate change ,Water Science and Technology - Published
- 2020
- Full Text
- View/download PDF
36. EVALUATION OF HEAVY RAINFALL RISK OF TYPHOON HAGIBIS ASSOCIATED WITH TYPHOON TRACK
- Author
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Hiroki Okachi, Tsuyoshi Hoshino, Yui Takehara, and Tomohito J. Yamada
- Subjects
Meteorology ,Typhoon ,Environmental science ,Track (rail transport) - Published
- 2020
- Full Text
- View/download PDF
37. Seeds for my Ideas
- Author
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Tomohito J. YAMADA
- Published
- 2022
- Full Text
- View/download PDF
38. Possible hydrological effect of rainfall duration bias in dynamical downscaling
- Author
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Masaru Inatsu, Yuta Tamaki, and Tomohito J. Yamada
- Subjects
Climatology ,weather pattern ,Earth and Planetary Sciences (miscellaneous) ,Environmental science ,dynamical down-scaling ,runoff ,Duration (project management) ,Surface runoff ,rainfall duration bias ,Water Science and Technology ,Downscaling ,heavy rainfall events - Abstract
Motivated by the problem of rainfall duration bias typically found in dynamical downscaling, its possible effect on hydrology was evaluated for heavy rainfall events over Kyushu, Japan, during summer. Heavy rainfall in western Kyushu is often related to a persistent Baiu rainband across Kyushu, while in eastern Kyushu it is related to the passage of typhoons near Kyushu. For typical heavy-rainfall periods, we ran a tank model for several target rivers to analyze runoff and water-depth sensitivity to the hyetograph by artificially extending the rainfall duration to 8 hours while maintaining the same total rainfall. This showed that a spike in peak runoff was suppressed by prolonged weak rainfall as typically found in downscaling outputs. The timing of rising runoff and water depth in the tank model was shifted earlier.
- Published
- 2019
39. Using Weather Pattern Recognition to Classify and Predict Summertime Heavy Rainfall Occurrence over the Upper Nan River Basin, Northwestern Thailand
- Author
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Dzung Nguyen-Le and Tomohito J. Yamada
- Subjects
Atmosphere ,Atmospheric Science ,Pattern detection ,geography ,geography.geographical_feature_category ,Climatology ,Pattern recognition (psychology) ,Drainage basin ,Environmental science ,Weather patterns ,Cluster analysis - Abstract
In this study, self-organizing maps in combination with K-means clustering are used to objectively classify the anomalous weather patterns (WPs) associated with the summertime [May–June (MJ) and July–August–September (JAS)] heavy rainfall days during 1979–2007 over the Upper Nan River basin, northwestern Thailand. The results show that in MJ, intensive rains are mainly brought by the remarkable enhancement of the westerly summer monsoon. Meanwhile, westward-propagating tropical disturbances including tropical cyclones are the primary factors that reproduce heavy rainfall over the Upper Nan in JAS. These results also suggest that the occurrence time of local heavy rainfall is strongly related to the seasonal transition of the summer monsoon over the Indochina Peninsula. The classification results are then implemented with the perfect prognosis and analog method to predict the occurrence (yes/no) of heavy rainfall days over the studied basin in summer 2008–17 using prognostic WPs from the operational Japan Meteorological Agency Global Spectral Model (GSM). In general, the forecast skill of this approach up to 3-day lead times is significantly improved, in which the method not only outperforms GSM with the same forecast ranges, but also its 3-day forecast is better than the 1–2-day forecasts from GSM. However, the false alarms ratio is still high, particularly in JAS. Nevertheless, it is expected that the new approach will provide warning and useful guidance for decision-making by forecasters or end-users engaging in water management and disaster prevention activities.
- Published
- 2019
- Full Text
- View/download PDF
40. NF-kB decoy oligodeoxynucleotide preserves disc height in a rabbit anular-puncture model and reduces pain induction in a rat xenograft-radiculopathy model
- Author
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Y A Asanuma, S Miyazaki, K Kato, Koji Akeda, J Yamada, Mary Ellen Lenz, Toru Fujiwara, Howard S. An, T Nakazawa, Koichi Masuda, Carol Muehleman, Kei Miyamoto, and K Asanuma
- Subjects
Pathology ,medicine.medical_specialty ,RD1-811 ,intervertebral disc-degeneration ,Diseases of the musculoskeletal system ,Intervertebral Disc Degeneration ,Punctures ,intervertebral disc-repair/regeneration ,Proinflammatory cytokine ,Gene expression ,Distribution (pharmacology) ,Medicine ,Animals ,Intervertebral Disc ,Radiculopathy ,Transcription factor ,animal models-general ,decoy ,business.industry ,NF-kappa B ,nuclear factor-κb ,Histology ,musculoskeletal system ,Disc height ,Rats ,Disease Models, Animal ,intradiscal injection ,RC925-935 ,Oligodeoxyribonucleotides ,Heterografts ,Tumor necrosis factor alpha ,intervertebral disc-histology ,Surgery ,Rabbits ,business ,Decoy ,Low Back Pain - Abstract
While it is known that the degenerated intervertebral disc (IVD) is one of the primary reasons for low-back pain and subsequent need for medical care, there are currently no established effective methods for direct treatment. Nuclear factor-κB (NF-κB) is a transcription factor that regulates various genes’ expression, among which are inflammatory cytokines, in many tissues including the IVD. NF-κB decoy is an oligodeoxynucleotide containing the NF-κB binding site that entraps NF-κB subunits, resulting in suppression of NF-κB activity. In the present preclinical study, NF-κB decoy was injected into degenerated IVDs using the rabbit anular-puncture model. In terms of distribution, NF-κB decoy persisted in the IVDs up to at least 4 weeks after injection. The remaining amount of NF-κB decoy indicated that it fit a double-exponential-decay equation. Investigation of puncture-caused degeneration of IVDs showed that NF-κB decoy injection recovered, dose-dependently, the reduced disc height that was associated with reparative cell cloning and morphological changes, as assessed through histology. Gene expression, by quantitative real-time polymerase chain reaction (qRT-PCR), showed that NF-κB decoy attenuated inflammatory gene expression, such as that of interleukin-1 and tumor necrosis factor-α, in rabbit degenerated IVDs. NF-κB decoy also reduced the pain response as seen using the “pain sensor” nude rat xenograft-radiculopathy model. This is the first report demonstrating that NF-κB decoy suppresses the inflammatory response in degenerated IVDs and restores IVD disc height loss. Therefore, the intradiscal injection of NF-κB decoy may have the potential as an effective therapeutic strategy for discogenic pain associated with degenerated IVDs.
- Published
- 2021
41. Grand Ethiopian renaissance dam and hydrologic hegemony over Abbay Basin
- Author
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Tomohito J. Yamada, Imran Ahmed Dar, Mulatu Kassa, Tesfa Gebrie Andualem, Guna Hewa, Quoc Bao Pham, Girum Getachew Demeke, Andualem, Tesfa Gebrie, Kassa, Mulatu, Getachew Demeke, Girum, Hewa, Guna, Dar, Imran Ahmed, Pham, Quoc Bao, and Yamada, Tomohito J
- Subjects
Hegemony ,Abbay river ,Renewable Energy, Sustainability and the Environment ,The Renaissance ,Environmental science ,riparian state ,GERD ,Structural basin ,Ancient history ,transboundary river ,Water Science and Technology ,hydropolitics - Abstract
Refereed/Peer-reviewed The hydropolitics over the Abbay basin has a long history of hydrologic hegemony by Egypt. The conflict over the Abbay River mainly occurred between Egypt, Ethiopia, and Sudan. Even though the river is shared by 11 countries, the use is principally dominated by Egypt in the last decades. This paper aimed to review the hydropolitics of Abbay/Blue Nile, its challenges, opportunities, and also the impacts of constructing the GERD over the riparian states (Ethiopia, Egypt, and Sudan). This review was done by searching and reviewing of papers published in reputable journals (peer reviewed and open access) focused on Abbay Basin, GERD and transboundary rivers. Egyptians said that Abbay is the primary water resource and their lifeblood and desires to continue their power on the Abbay basin. On the opposite side, Ethiopia, contributing about 86% of the flow has not been benefited from the river. This controversy has brought disagreement between Ethiopia, Egypt, and Sudan but mainly the tensions between Egypt and Ethiopia are running high. For the last 40 years, the two nations haven't experienced such resistance. However, the starting of the construction of the Grand Ethiopian Renaissance Dam (GERD) brought deviation. Ethiopians are constructing the dam over the river Abbay by their source of finance and people for ensuring their capacity and the moral issue of the people. Egypt's hydrological hegemony on the Abbay river is reversed from the dominance of one state to the equitable and benefit-sharing of the transboundary river. Even though, the standard water program has been developed, the riparian states haven't entirely approved it due to current and projected water needs, conflict of interest, little data, and lack of mutual aid. The variety of hydrological processes within the Abbay basin makes it challenging to implement a standard plan that could be applied for overall riparian states. Although Egypt and Sudan are resisting the efforts to incorporate the other upstream riparian's within the negotiations, they have to understand that the river and its management must be advanced from a regional viewpoint. The development of GERD within the Abbay river by Ethiopia has a positive impact on downstream countries because it provides electricity, regulates the flow, controls flood, and reduces the cost of reservoir maintenance in downstream dams. A comprehensive understanding of hydrological processes is currently essential for effective water management in the Abbay basin.
- Published
- 2021
42. Introduction of Confidence Interval Based on Probability Limit Method Test into Non-Stationary Hydrological Frequency Analysis
- Author
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Tadashi Yamada, Tomohito J. Yamada, and Keita Shimizu
- Subjects
lcsh:Hydraulic engineering ,010504 meteorology & atmospheric sciences ,Geography, Planning and Development ,Climate change ,Probability limit ,Aquatic Science ,01 natural sciences ,Biochemistry ,Method test ,law.invention ,lcsh:Water supply for domestic and industrial purposes ,law ,lcsh:TC1-978 ,Statistics ,0101 mathematics ,uncertainty ,Reliability (statistics) ,0105 earth and related environmental sciences ,Water Science and Technology ,Mathematics ,Frequency analysis ,lcsh:TD201-500 ,010102 general mathematics ,Confidence interval ,Variable (computer science) ,non-stationary hydrological frequency analysis ,climate change ,confidence interval ,Generalized extreme value distribution ,probability limit method test - Abstract
Nonstationarity in hydrological variables has been identified throughout Japan in recent years. As a result, the reliability of designs derived from using method based on the assumption of stationary might deteriorate. Non-stationary hydrological frequency analysis is among the measures to counter this possibility. Using this method, time variations in the probable hydrological quantity can be estimated using a non-stationary extreme value distribution model with time as an explanatory variable. In this study, we build a new method for constructing the confidence interval regarding the non-stationary extreme value distribution by applying a theory of probability limit method test. Furthermore, by introducing a confidence interval based on probability limit method test into the non-stationary hydrological frequency analysis, uncertainty in design rainfall because of lack of observation information was quantified, and it is shown that assessment pertaining to both the occurrence risk of extremely heavy rainfall and changes in the trend of extreme rainfall accompanied with climate change is possible.
- Published
- 2020
43. Orthopaedic Surgery Elicits a Systemic Anti-Inflammatory Signature
- Author
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Naglaa S. Mohamed, Matthew J. Anderson, Elizabeth Lyden, Debbie Vidlak, Kevin L. Garvin, Dana M. Schwarz, Beau S. Konigsberg, Tammy Kielian, Kelsey J. Yamada, Rachel W. Fallet, Cortney E. Heim, Chris A. Cornett, Jessica Odvody, Annaliesa S. Anderson, Curtis W. Hartman, and Roxanne Alter
- Subjects
leukocytes ,lcsh:Medicine ,Context (language use) ,Granulocyte ,CCL8 ,Peripheral blood mononuclear cell ,Article ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,medicine ,Synovial fluid ,030304 developmental biology ,0303 health sciences ,business.industry ,lcsh:R ,General Medicine ,myeloid-derived suppressor cells ,cytokines ,CXCL1 ,medicine.anatomical_structure ,Immunology ,arthroplasty ,Bacterial antigen ,business ,030215 immunology - Abstract
Little information is available on the functional activity of leukocytes after arthroplasty or the expansion of populations with immune suppressive properties during the acute post-operative period. Synovial fluid and matched pre- and post-surgical blood samples were collected from total hip and knee arthroplasty patients (THA and TKA, respectively) to examine the impact of surgery on peripheral blood leukocyte frequency, bactericidal activity, and inflammatory mediator expression. For spinal surgeries, inflammatory mediator production by peripheral blood mononuclear cells (PBMCs) pre- and post-surgery was examined. An expansion of immune suppressive granulocytic myeloid-derived suppressor cells (G-MDSCs) was observed following arthroplasty, which correlated with significantly increased serum interleukin-10 (IL-10) levels. Analysis of synovial fluid from THA and TKAs revealed reduced granulocyte colony-stimulating factor (G-CSF) and soluble CD40 ligand (sCD40L) and increased interleukin-6 (IL-6), monocyte chemoattractant protein 2 (CCL2) and Fms-like tyrosine kinase 3 ligand (Flt-3L) compared to pre- and post-surgical serum. For the spinal surgery cohort, stimulation of PBMCs isolated post-surgery with bacterial antigens produced significantly less pro-inflammatory (IL-1&alpha, IL-1&beta, interleukin-1 receptor antagonist (IL-1RA), IL-12p40, growth-related oncogene-&alpha, /GRO-&alpha, (CXCL1) and 6Ckine (CCL21)) and more anti-inflammatory/tissue repair mediators (IL-10, G-CSF and granulocyte-macrophage colony-stimulating factor (GM-CSF)) compared to PBMCs recovered before surgery. The observed bias towards systemic anti-inflammatory changes without concomitant increases in pro-inflammatory responses may influence susceptibility to infection following orthopaedic surgery in the context of underlying co-morbidities or risk factors.
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- 2020
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44. Analyses of Extreme Precipitation Associated with the Kinugawa River Flood in September 2015 Using a Large Ensemble Downscaling Experiment
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Kosuke Ito, Tomohito J. Yamada, Mikiko Fujita, Masuo Nakano, Sho Kawazoe, and Tomonori Sato
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Atmospheric Science ,River flood ,Climatology ,Environmental science ,Precipitation ,Downscaling - Published
- 2019
- Full Text
- View/download PDF
45. Influence of the Long-Term Temperature Trend on the Number of New Records for Annual Maximum Daily Precipitation in Japan
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Tsuyoshi Hoshino, Chhay Ngorn Seang, and Tomohito J. Yamada
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Atmospheric Science ,010504 meteorology & atmospheric sciences ,Vapor pressure ,0208 environmental biotechnology ,Climate system ,Climate change ,02 engineering and technology ,Environmental Science (miscellaneous) ,lcsh:QC851-999 ,Atmospheric sciences ,01 natural sciences ,Clausius-Clapeyron relation ,Clausius–Clapeyron relation ,Japan ,annual maximum precipitation intensity ,Precipitation ,0105 earth and related environmental sciences ,number of new records ,020801 environmental engineering ,Sampling theory ,Term (time) ,climate change ,sampling number theory ,Environmental science ,lcsh:Meteorology. Climatology - Abstract
Record-breaking precipitation events have been frequent in Japan in recent years. To investigate the statistical characteristics of the frequency of record-breaking events, observations can be compared with the values derived from sampling theory with a stationary state. This study counted the number of record-breaking daily and 3-day total precipitation events at 58 rain-gauge stations in Japan between 1901 and 2018. The average number of record-breaking events over the 118-year period was 5.9 for daily total precipitation, which is larger than the theoretical value of 5.4 derived using the assumption that the climate system over the same period was stationary. Sampling theory was used to incorporate the influence of the long-term temperature trend from the Clausius&ndash, Clapeyron relation associated with the saturation vapor pressure. In theory, the long-term temperature trend gives a similar number of observed record-breaking events when the long-term temperature trend is approximately 0.5 Kelvin/100 years.
- Published
- 2020
46. Heavy rainfall and flood risk assessment method considering the future climate change
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Tsuyoshi Hoshino and Tomohito J. Yamada
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Flood risk assessment ,Environmental science ,Future climate ,Water resource management - Abstract
Existing flood control plans have been implemented based on rainfall estimated from observation data. However, we have data from the past several decades. Thus, it is not enough to project future extreme events from existing observation data. Therefore, Japan has been created huge ensemble of high-resolution climate model simulation based on the laws of physics. The data consist of past and future climate situations (past climate: total 3,000 years, 4 K warmer climate: total 5,400 years). It has enabled to quantitatively evaluate the probability of heavy rainfall and flooding on the future 4K-warmed earth.Moreover, we apply the statistical theory of extreme value to evaluate the probability of heavy rainfall and flooding in the future. The results from statistical method is equivalent to the results from the huge ensemble data from climate model. It supports Japanese governments in formulating and carrying out their adaptation plans.
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- 2020
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47. Effects of momentum and enthalpy exchange on the typhoon intensity in the atmospheric boundary layer considering sea spray and rainfall
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Hiroki Okachi and Tomohito J. Yamada
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Momentum (technical analysis) ,Planetary boundary layer ,Typhoon ,Enthalpy ,Environmental science ,Atmospheric sciences ,Sea spray ,Intensity (heat transfer) - Abstract
Typhoon intensity changes according to the momentum and enthalpy flux supplied from the boundary layer. MPI theory uses the ratio between a drag coefficient and an enthalpy exchange coefficient, which are indexes that indicate how much momentum or enthalpy is exchanged between the air and the sea. Each is a coefficient depending on wind speed, temperature and SST.However, Lighthill (1999) is shown that latent heat exchange varies because sea spray generated from the sea surface evaporates in the boundary layer. In addition, Barenblatt (2005), inspired by Lighthill (1999), showed that the Karman constant changes according to the Froude number and the drag coefficient changes. Since both changes can change the MPI theory, it is necessary to quantitatively evaluate the effect of the droplets generated from the sea surface in order to grasp both accurately. In addition, it is necessary to consider the effects of rainfall in actual storms, which often involve rainfall.In this study, to evaluate the flux exchange in the boundary layer quantitatively, we show the drag coefficient and the enthalpy exchange coefficient taking into account sea spray and rain. In addition, we show the results of observation of sea spray and rain using disdrometer and X-band radar.
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- 2020
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48. Assessment of heavy rainfall risk of typhoon Hagibis (2019) associated with typhoon track
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Tomohito J. Yamada and Tsuyoshi Hoshino
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Meteorology ,Typhoon ,Environmental science ,Track (rail transport) - Abstract
Typhoon Hagibis (2019) caused heavy rainfall and big flood damage in many river basins in Japan. In this research, we suggested the risk assessment method for heavy rainfall due to typhoon from the view point of a typhoon track by using records of rain gauges and typhoon track data from 1951. The relationships between typhoon position and rainfall intensity were obtained from the rain gauges and the typhoon track data for each rain gauge points. The relationships make it clear that typhoon track passes through the areas in which heavy rainfall occurred. The relationship can be used for risk assessment of heavy rainfall in terms of typhoon track. The track of Typhoon Hagibis is the heaviest rainfall track for some points located in north of the typhoon track. However, some points close to the typhoon center or in south of the typhoon track are not the heaviest rainfall track. It means that if typhoon Hagibis shifted the track, the typhoon would cause heavier rainfall in some points. The result can be used not only for estimation of potential rainfall but also for selection of dangerous typhoons from large ensemble dataset. We assessed heavy rainfall risk of typhoons similar to typhoon Hagibis under historical and future climate by using the large ensemble climate dataset (d4PDF).
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- 2020
- Full Text
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49. Monocyte metabolic reprogramming promotes pro-inflammatory activity and Staphylococcus aureus biofilm clearance
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Tammy Kielian, Wenting Zhang, Kelsey J. Yamada, Pankaj K. Singh, Xinyuan Xi, Dezhen Wang, Cortney E. Heim, Kuldeep S. Attri, and Tatiana K. Bronich
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Oligomycin ,Staphylococcus ,Antibiotics ,Pathology and Laboratory Medicine ,medicine.disease_cause ,Biochemistry ,Monocytes ,Oxidative Phosphorylation ,Mice ,White Blood Cells ,chemistry.chemical_compound ,Implants, Experimental ,Animal Cells ,Medicine and Health Sciences ,Metabolites ,Nanotechnology ,Macrophage ,Biology (General) ,0303 health sciences ,Antimicrobials ,Chemistry ,030302 biochemistry & molecular biology ,Drugs ,Staphylococcal Infections ,Cellular Reprogramming ,Bacterial Pathogens ,3. Good health ,medicine.anatomical_structure ,Medical Microbiology ,Staphylococcus aureus ,Engineering and Technology ,Cellular Types ,Pathogens ,Research Article ,Biotechnology ,medicine.drug_class ,QH301-705.5 ,Immune Cells ,Immunology ,Bioengineering ,Oxidative phosphorylation ,Microbiology ,03 medical and health sciences ,Microbial Control ,Virology ,Genetics ,medicine ,Animals ,Microbial Pathogens ,Molecular Biology ,030304 developmental biology ,Inflammation ,Pharmacology ,Blood Cells ,Bacteria ,Monocyte ,Organisms ,Biofilm ,Biology and Life Sciences ,Bacteriology ,Cell Biology ,biochemical phenomena, metabolism, and nutrition ,RC581-607 ,Metabolism ,Anaerobic glycolysis ,Biofilms ,Bionanotechnology ,Nanoparticles ,Oligomycins ,Parasitology ,Immunologic diseases. Allergy ,Bacterial Biofilms - Abstract
Biofilm-associated prosthetic joint infections (PJIs) cause significant morbidity due to their recalcitrance to immune-mediated clearance and antibiotics, with Staphylococcus aureus (S. aureus) among the most prevalent pathogens. We previously demonstrated that S. aureus biofilm-associated monocytes are polarized to an anti-inflammatory phenotype and the adoptive transfer of pro-inflammatory macrophages attenuated biofilm burden, highlighting the critical role of monocyte/macrophage inflammatory status in dictating biofilm persistence. The inflammatory properties of leukocytes are linked to their metabolic state, and here we demonstrate that biofilm-associated monocytes exhibit a metabolic bias favoring oxidative phosphorylation (OxPhos) and less aerobic glycolysis to facilitate their anti-inflammatory activity and biofilm persistence. To shift monocyte metabolism in vivo and reprogram cells to a pro-inflammatory state, a nanoparticle approach was utilized to deliver the OxPhos inhibitor oligomycin to monocytes. Using a mouse model of S. aureus PJI, oligomycin nanoparticles were preferentially internalized by monocytes, which significantly reduced S. aureus biofilm burden by altering metabolism and promoting the pro-inflammatory properties of infiltrating monocytes as revealed by metabolomics and RT-qPCR, respectively. Injection of oligomycin alone had no effect on monocyte metabolism or biofilm burden, establishing that intracellular delivery of oligomycin is required to reprogram monocyte metabolic activity and that oligomycin lacks antibacterial activity against S. aureus biofilms. Remarkably, monocyte metabolic reprogramming with oligomycin nanoparticles was effective at clearing established biofilms in combination with systemic antibiotics. These findings suggest that metabolic reprogramming of biofilm-associated monocytes may represent a novel therapeutic approach for PJI., Author summary Prosthetic joint infections (PJIs) are a catastrophic complication following joint replacement surgery and are predominantly caused by staphylococcal species, such as S. aureus. The morbidity associated with PJI results, in large part, from the inability to clear infection, as bacteria are organized into heterogeneous communities known as biofilms, which are recalcitrant to antibiotic therapy and immune-mediated clearance. This study revealed that biofilm-associated monocytes exhibit a metabolic bias towards oxidative phosphorylation (OxPhos), which is linked to their anti-inflammatory properties. We developed a nanoparticle delivery approach using the OxPhos inhibitor oligomycin, which significantly reduced biofilm burden by promoting the pro-inflammatory properties of infiltrating monocytes in a mouse model of S. aureus PJI. Notably, nanoparticle delivery combined with systemic antibiotics reduced biofilm titers in mice to below the limit of detection. These findings suggest that leukocyte metabolic reprogramming could represent a novel therapeutic avenue for circumventing the two-stage revision protocol for patients with PJI by treating an infected implant in situ and alleviating a second surgery, which would represent a significant reduction in patient morbidity.
- Published
- 2020
50. Heavy Rainfall Duration Bias in Dynamical Downscaling and Its Related Synoptic Patterns in Summertime Asian Monsoon
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Tomohito J. Yamada, Masaru Inatsu, Dzung Nguyen-Le, and Yuta Tamaki
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Atmospheric Science ,010504 meteorology & atmospheric sciences ,0208 environmental biotechnology ,Extreme events ,Regional models ,Monsoons ,02 engineering and technology ,Atmospheric model ,Precipitation ,Monsoon ,Classification ,01 natural sciences ,020801 environmental engineering ,Bias ,Climatology ,East Asian Monsoon ,Environmental science ,Duration (project management) ,0105 earth and related environmental sciences ,Downscaling - Abstract
Dynamical downscaling (DDS) was conducted over Japan by using a regional atmospheric model with reanalysis data to investigate the rainfall duration bias over Kyushu, Japan, in July and August from 2006 to 2015. The model results showed that DDS had a positive rainfall duration bias over Kyushu and a dry bias over almost all of Kyushu, which were emphasized for extreme rainfall events. Investigated was the rainfall duration bias for heavy rainfall days, accompanied by synoptic-scale forcing, in which daily precipitation exceeded 30 mm day−1 and covered over 20% of the Kyushu area. Heavy rainfall days were sampled from observed rainfall data that were based on rain gauge and radar observations. A set of daily climatic variables of horizontal wind and equivalent potential temperature at 850 hPa and sea level pressure, around southwestern Japan, corresponding to the sampled dates, was selected to conduct a self-organizing map (SOM) and K-means method. The SOM and K-means method objectively classified three synoptic patterns related to heavy rainfall over Kyushu: strong monsoon, weak monsoon, and typhoon patterns. Rainfall duration had a positive bias in western Kyushu for the strong monsoon pattern and a positive bias in southern and east-coast Kyushu for the typhoon pattern, whereas there was little rainfall duration bias in the weak monsoon pattern. The bias for the typhoon pattern was related to rainfall events with a strong rainfall peak. The results suggest that bias correction for rainfall duration would be required for accurately estimating direct runoff in a catchment area in addition to the precipitation amount.
- Published
- 2018
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