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1. Draft Genomes for Eight Burkholderia mallei Isolates from Turkey

Author

Daligault, H. E., primary, Johnson, S. L., additional, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Coyne, S. R., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C.-C., additional, Munk, C., additional, Wolcott, M. J., additional, Palacios, G. F., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Scholz, M. B., additional, and Chain, P. S., additional

Published
2016
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2. Complete Genome Assembly of Staphylococcus epidermidis AmMS 205

Author

Davenport, K. W., primary, Daligault, H. E., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Scholz, M. B., additional, Teshima, H., additional, and Johnson, S. L., additional

Published
2014
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3. Whole-Genome Assemblies of 56 Burkholderia Species

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C.-C., additional, Munk, C., additional, Palacios, G. F., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Scholz, M. B., additional, and Johnson, S. L., additional

Published
2014
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4. Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853)

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Gibbons, H. S., additional, Jaissle, J., additional, Lo, C.-C., additional, Meincke, L., additional, Munk, A. C., additional, Rosenzweig, C. N., additional, and Johnson, S. L., additional

Published
2014
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5. Complete Genome Assembly of Escherichia coli ATCC 25922, a Serotype O6 Reference Strain

Author

Minogue, T. D., primary, Daligault, H. A., additional, Davenport, K. W., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Chertkov, O., additional, Coyne, S. R., additional, Freitas, T., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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6. Draft Genome Assembly of Delftia acidovorans Type Strain 2167

Author

Davenport, K. W., primary, Daligault, H. E., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Palacios, G. F., additional, Redden, C. L., additional, Scholz, M. B., additional, Teshima, H., additional, and Johnson, S. L., additional

Published
2014
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7. Complete Genome Assembly of Streptococcus pyogenes ATCC 19615, a Group A β-Hemolytic Reference Strain

Author

Minogue, T. D., primary, Daligault, H. A., additional, Davenport, K. W., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Chertkov, O., additional, Coyne, S. R., additional, Freitas, T., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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8. Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain

Author

Minogue, T. D., primary, Daligault, H. E., additional, Davenport, K. W., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Chertkov, O., additional, Freitas, T., additional, Gibbons, H. S., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Palacios, G. F., additional, Rosenzweig, C. N., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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9. Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501

Author

Minogue, T. D., primary, Daligault, H. E., additional, Davenport, K. W., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Gibbons, H. S., additional, Jaissle, J., additional, Chertkov, O., additional, Freitas, T., additional, Rosenzweig, C. N., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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10. Complete Genome Assembly of Corynebacterium sp. Strain ATCC 6931

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Li, P-E., additional, Meincke, L., additional, Munk, A. C., additional, Palacios, G. F., additional, Redden, C. L., additional, and Johnson, S. L., additional

Published
2014
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11. Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672

Author

Frey, K. G., primary, Bishop-Lilly, K. A., additional, Daligault, H. E., additional, Davenport, K. W., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Chertkov, O., additional, Freitas, T., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Minogue, T. D., additional, Palacios, G. F., additional, Redden, C. L., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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12. Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C.-C., additional, Meincke, L., additional, Munk, A. C., additional, Palacios, G. F., additional, Redden, C. L., additional, and Johnson, S. L., additional

Published
2014
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13. Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247)

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Freitas, T., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Lo, C.-C., additional, Meincke, L., additional, Munk, A. C., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, and Johnson, S. L., additional

Published
2014
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14. Whole-Genome Sequence of Listeria monocytogenes Type Strain 53 XXIII

Author

Davenport, K. W., primary, Daligault, H. E., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Li, P.-E., additional, Palacios, G. F., additional, Redden, C. L., additional, Scholz, M. B., additional, Teshima, H., additional, and Johnson, S. L., additional

Published
2014
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15. Whole-Genome Sequences of 24 Brucella Strains

Author

Minogue, T. D., primary, Daligault, H. A., additional, Davenport, K. W., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Chertkov, O., additional, Coyne, S. R., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C.-C., additional, Palacios, G. F., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Scholz, M. B., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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16. Complete Genome Assembly of a Quality Control Reference Isolate, Moraxella catarrhalis Strain ATCC 25240

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C.-C., additional, Meincke, L., additional, Munk, C., additional, Palacios, G. F., additional, Redden, C. L., additional, and Johnson, S. L., additional

Published
2014
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17. Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132

Author

Minogue, T. D., primary, Daligault, H. E., additional, Davenport, K. W., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Chertkov, O., additional, Freitas, T., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Palacios, G. F., additional, Redden, C. L., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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18. Whole-Genome Sequences of Nine Francisella Isolates

Author

Davenport, K. W., primary, Daligault, H. E., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Palacios, G. F., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Scholz, M. B., additional, Teshima, H., additional, and Johnson, S. L., additional

Published
2014
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19. Genome Assembly of Serratia marcescens Type Strain ATCC 13880

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Gibbons, H. S., additional, Jaissle, J., additional, Rosenzweig, C. N., additional, Scholz, M., additional, Teshima, H., additional, and Johnson, S. L., additional

Published
2014
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20. Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01

Author

Minogue, T. D., primary, Daligault, H. E., additional, Davenport, K. W., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Chertkov, O., additional, Freitas, T., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Palacios, G. F., additional, Redden, C. L., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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21. Complete Genome Assembly of Reference Strain Ochrobactrum anthropi ATCC 49687

Author

Minogue, T. D., primary, Daligault, H. A., additional, Davenport, K. W., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Chertkov, O., additional, Coyne, S. R., additional, Freitas, T., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Palacios, G. F., additional, Redden, C. L., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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22. Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ

Author

Bishop-Lilly, K. A., primary, Frey, K. G., additional, Daligault, H. E., additional, Davenport, K. W., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Chertkov, O., additional, Freitas, T., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Minogue, T. D., additional, Palacios, G. F., additional, Redden, C. L., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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23. Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C.-C., additional, Munk, C., additional, Palacios, G. F., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Scholz, M. B., additional, and Johnson, S. L., additional

Published
2014
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24. Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C.-C., additional, Meincke, L., additional, Munk, C., additional, Palacios, G. F., additional, Redden, C. L., additional, and Johnson, S. L., additional

Published
2014
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25. Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137

Author

Davenport, K. W., primary, Daligault, H. E., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C. C., additional, Palacios, G. F., additional, Redden, C. L., additional, Scholz, M. B., additional, Teshima, H., additional, and Johnson, S. L., additional

Published
2014
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26. Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Freitas, T., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Lo, C.-C., additional, Meincke, L., additional, Munk, A. C., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, and Johnson, S. L., additional

Published
2014
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28. Draft Genome Assembly of Neisseria lactamica Type Strain A7515

Author

Minogue, T. D., primary, Daligault, H. A., additional, Davenport, K. W., additional, Bishop-Lilly, K. A., additional, Bruce, D. C., additional, Chain, P. S., additional, Chertkov, O., additional, Coyne, S. R., additional, Freitas, T., additional, Frey, K. G., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Palacios, G. F., additional, Redden, C. L., additional, Xu, Y., additional, and Johnson, S. L., additional

Published
2014
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29. Twenty Whole-Genome Bacillus sp. Assemblies

Author

Daligault, H. E., primary, Davenport, K. W., additional, Minogue, T. D., additional, Bishop-Lilly, K. A., additional, Broomall, S. M., additional, Bruce, D. C., additional, Chain, P. S., additional, Coyne, S. R., additional, Frey, K. G., additional, Gibbons, H. S., additional, Jaissle, J., additional, Koroleva, G. I., additional, Ladner, J. T., additional, Lo, C.-C., additional, Munk, C., additional, Palacios, G. F., additional, Redden, C. L., additional, Rosenzweig, C. N., additional, Scholz, M. B., additional, and Johnson, S. L., additional

Published
2014
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30. Strategies for Validation of Inactivation of Viruses with Trizol® LS and Formalin Solutions.

Author

Retterer C, Kenny T, Zamani R, Altamura LA, Kearney B, Jaissle J, Coyne S, Olschner S, and Harbourt D

Abstract

Introduction: Inactivation of biological agents and particularly select agents has come under increased scrutiny since the US Army inadvertently shipped live anthrax both inside and outside the US, leading to more stringent regulations regarding inactivation., Methods: Formalin and Trizol® LS were used to inactivate virus samples in complex matrices. Cytotoxic chemicals were removed using either desalting or concentrating columns or through dilution using HYPER Flasks . Efficacy of inactivation was evaluated either through plaque assay or immunofluorescence assay., Results: All virus samples and tissue specimens were successfully inactivated using either formalin or Trizol® LS. Both the desalting columns and concentrating columns were able to remove cytotoxic chemicals to facilitate viral amplification in controls. Dilution of cytotoxic chemicals through HYPER Flasks was also successful provided that media was changed completely within 48 hours of first cell passage., Discussion: All inactivation testing demonstrates that both formalin and Trizol® LS successfully inactivate virus-infected cell lines and tissues, which is consistent with previously published literature. Each sample cleanup method has its benefits and pitfalls. Desalting columns can process the largest sample size but are also susceptible to plugging and degradation, whereas concentrating columns are not as vulnerable but can only process 5% of the sample load per run., Conclusion: Based on our results along with those of our colleagues, it is recommended that the regulatory authorities re-evaluate the requirements for each entity to validate well-established inactivation methods in house because there would be limited benefits despite the considerable resources required for this effort., (© ABSA International 2020.)

Published
2020
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32. Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor.

Author

Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Ketheesan N, Mayo M, Hoffmaster A, Elrod MG, Wuthiekanun V, Tuanyok A, Norton R, Currie BJ, Wagner DM, Keim P, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, and Chain PS

Published
2016
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33. Complete genome sequences for 59 burkholderia isolates, both pathogenic and near neighbor.

Author

Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, and Chain PS

Abstract

The genus Burkholderia encompasses both pathogenic (including Burkholderia mallei and Burkholderia pseudomallei, U.S. Centers for Disease Control and Prevention Category B listed), and nonpathogenic Gram-negative bacilli. Here we present full genome sequences for a panel of 59 Burkholderia strains, selected to aid in detection assay development., (Copyright © 2015 Johnson et al.)

Published
2015
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34. Genome sequencing of 18 francisella strains to aid in assay development and testing.

Author

Johnson SL, Daligault HE, Davenport KW, Coyne SR, Frey KG, Koroleva GI, Broomall SM, Bishop-Lilly KA, Bruce DC, Chertkov O, Freitas T, Jaissle J, Ladner JT, Rosenzweig CN, Gibbons HS, Palacios GF, Redden CL, Xu Y, Minogue TD, and Chain PS

Abstract

Francisella tularensis is a highly infectious bacterium with the potential to cause high fatality rates if infections are untreated. To aid in the development of rapid and accurate detection assays, we have sequenced and annotated the genomes of 18 F. tularensis and Francisella philomiragia strains., (Copyright © 2015 Johnson et al.)

Published
2015
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35. Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica.

Author

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Coyne SR, Gibbons HS, Lo CC, Munk AC, Rosenzweig CN, Koroleva GI, Palacios GF, Redden CL, Xu Y, Minogue TD, and Chain PS

Abstract

The genus Yersinia includes three human pathogens, of which Yersinia pestis is responsible for >2,000 illnesses each year. To aid in the development of detection assays and aid further phylogenetic elucidation, we sequenced and assembled the complete genomes of 32 strains (across 9 Yersinia species)., (Copyright © 2015 Johnson et al.)

Published
2015
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36. Complete genome sequences for 35 biothreat assay-relevant bacillus species.

Author

Johnson SL, Daligault HE, Davenport KW, Jaissle J, Frey KG, Ladner JT, Broomall SM, Bishop-Lilly KA, Bruce DC, Gibbons HS, Coyne SR, Lo CC, Meincke L, Munk AC, Koroleva GI, Rosenzweig CN, Palacios GF, Redden CL, Minogue TD, and Chain PS

Abstract

In 2011, the Association of Analytical Communities (AOAC) International released a list of Bacillus strains relevant to biothreat molecular detection assays. We present the complete and annotated genome assemblies for the 15 strains listed on the inclusivity panel, as well as the 20 strains listed on the exclusivity panel., (Copyright © 2015 Johnson et al.)

Published
2015
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