5 results on '"Jakob Mølkjær Slipsager"'
Search Results
2. Comparison of prospective and retrospective motion correction in 3D-encoded neuroanatomical MRI
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Liselotte Højgaard, Robert Frost, Oline Vinter Olesen, M. Dylan Tisdall, Camilo Jaimes, Stefan L. Glimberg, Rasmus Reinhold Paulsen, Paul Wighton, P. Ellen Grant, Jakob Mølkjær Slipsager, Borjan Gagoski, and Andre van der Kouwe
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business.industry ,Computer science ,Image quality ,Brain ,Tracking system ,Iterative reconstruction ,Motion correction ,Magnetic Resonance Imaging ,Imaging phantom ,Article ,Acceleration ,Motion ,Calibration ,Image Processing, Computer-Assisted ,Nyquist–Shannon sampling theorem ,Radiology, Nuclear Medicine and imaging ,Computer vision ,Artificial intelligence ,Prospective Studies ,business ,Artifacts ,Retrospective Studies - Abstract
PURPOSE To compare prospective motion correction (PMC) and retrospective motion correction (RMC) in Cartesian 3D-encoded MPRAGE scans and to investigate the effects of correction frequency and parallel imaging on the performance of RMC. METHODS Head motion was estimated using a markerless tracking system and sent to a modified MPRAGE sequence, which can continuously update the imaging FOV to perform PMC. The prospective correction was applied either before each echo train (before-ET) or at every sixth readout within the ET (within-ET). RMC was applied during image reconstruction by adjusting k-space trajectories according to the measured motion. The motion correction frequency was retrospectively increased with RMC or decreased with reverse RMC. Phantom and in vivo experiments were used to compare PMC and RMC, as well as to compare within-ET and before-ET correction frequency during continuous motion. The correction quality was quantitatively evaluated using the structural similarity index measure with a reference image without motion correction and without intentional motion. RESULTS PMC resulted in superior image quality compared to RMC both visually and quantitatively. Increasing the correction frequency from before-ET to within-ET reduced the motion artifacts in RMC. A hybrid PMC and RMC correction, that is, retrospectively increasing the correction frequency of before-ET PMC to within-ET, also reduced motion artifacts. Inferior performance of RMC compared to PMC was shown with GRAPPA calibration data without intentional motion and without any GRAPPA acceleration. CONCLUSION Reductions in local Nyquist violations with PMC resulted in superior image quality compared to RMC. Increasing the motion correction frequency to within-ET reduced the motion artifacts in both RMC and PMC.
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- 2021
3. Quantifying the Financial Savings of Motion Correction in Brain MRI:A Model-Based Estimate of the Costs Arising From Patient Head Motion and Potential Savings From Implementation of Motion Correction
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Rasmus Reinhold Paulsen, Oline Vinter Olesen, Lisbeth Marner, Helle Hjorth Johannesen, Alka Seth, Jakob Mølkjær Slipsager, Pernille Martens, Stefan L. Glimberg, Liselotte Højgaard, Otto M. Henriksen, and Jes Søgaard
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medicine.medical_specialty ,Cost estimate ,Image quality ,Neuroimaging ,motion artifacts ,Fluid-attenuated inversion recovery ,Motion (physics) ,030218 nuclear medicine & medical imaging ,Motion ,03 medical and health sciences ,0302 clinical medicine ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Child ,cost saving ,motion correction ,Retrospective Studies ,Interpretability ,Statistical hypothesis testing ,Protocol (science) ,neuroimaging ,business.industry ,Brain ,Magnetic Resonance Imaging ,Radiology ,Artifacts ,business ,MRI - Abstract
Background: Patient head motion is a major concern in clinical brain MRI, as it reduces the diagnostic image quality and may increase examination time and cost. Purpose: To investigate the prevalence of MR images with significant motion artifacts on a given clinical scanner and to estimate the potential financial cost savings of applying motion correction to clinical brain MRI examinations. Study Type: Retrospective. Subjects: In all, 173 patients undergoing a PET/MRI dementia protocol and 55 pediatric patients undergoing a PET/MRI brain tumor protocol. The total scan time of the two protocols were 17 and 40 minutes, respectively. Field Strength/Sequences: 3 T, Siemens mMR Biograph, MPRAGE, DWI, T 1 and T 2-weighted FLAIR, T 2-weighted 2D-FLASH, T 2-weighted TSE. Assessment: A retrospective review of image sequences from a given clinical MRI scanner was conducted to investigate the prevalence of motion-corrupted images. The review was performed by three radiologists with different levels of experience using a three-step semiquantitative scale to classify the quality of the images. A total of 1013 sequences distributed on 228 MRI examinations were reviewed. The potential cost savings of motion correction were estimated by a cost estimation for our country with assumptions. Statistical Test: The cost estimation was conducted with a 20% lower and upper bound on the model assumptions to include the uncertainty of the assumptions. Results: 7.9% of the sequences had motion artifacts that decreased the interpretability, while 2.0% of the sequences had motion artifacts causing the images to be nondiagnostic. The estimated annual cost to the clinic/hospital due to patient head motion per scanner was $45,066 without pediatric examinations and $364,242 with pediatric examinations. Data Conclusion: The prevalence of a motion-corrupted image was found in 2.0% of the reviewed sequences. Based on the model, repayment periods are presented as a function of the price for applying motion correction and its performance. Evidence Level: 4. Technical Efficacy: Stage 6 J. Magn. Reson. Imaging 2020;52:731–738.
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- 2020
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4. Statistical Shape Clustering of Left Atrial Appendages
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Ole De Backer, Rasmus Reinhold Paulsen, Per E Sigvardsen, Andy L. Olivares, Jakob Mølkjær Slipsager, Oscar Camara, Kristine Aavild Juhl, and Klaus F. Kofoed
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Appendage ,Wing ,business.industry ,Pattern recognition ,Signed distance function ,Mixture model ,Point distribution model ,Left atrial ,cardiovascular diseases ,Artificial intelligence ,Cluster analysis ,business ,Shape analysis (digital geometry) ,Mathematics - Abstract
Fifteen percent of all strokes are caused by emboli formed in the left atrium (LA) in case of atrial fibrillation (AF). The most common site of thrombus formation is inside the left atrial appendage (LAA). The LAA is accounting for 70% to 90% of the thrombi formed in the LA in patients with non-valvular AF. Studies have shown there is a correlation between the LAA morphology and risk of ischemic stroke; Chicken Wing and Cauliflower LAA shapes are associated with lower and higher risk, respectively. These two LAA shape categories come from a popular classification in the medical domain, but it is subjective and based on qualitative shape parameters. In this paper, we describe a full framework for shape analysis and clustering of the LAA. Initially, we build a point distribution model to quantitatively describe the LAA shape variation based on 103 LAA surfaces segmented and reconstructed from multidetector computed tomography volumes. We are successfully able to determine point correspondence between LAA surfaces, by non-rigid volumetric registration of signed distance fields. To validate if LAA shapes are clustered, we employ an unsupervised clustering on the shape models parameters to estimate the natural number of clusters in our training set, where the number of shape clusters is estimated by validating the test log-likelihood of several Gaussian mixture models using two level cross-validation. We found that the LAAs surfaces basically formed two shape clusters broadly corresponding to the Chicken wing and non-Chicken Wing morphologies, which fits well with clinical knowledge.
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- 2019
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5. Markerless motion tracking and correction for PET, MRI, and simultaneous PET/MRI
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Oline Vinter Olesen, Ian Law, Andreas H Ellegaard, Stefan L. Glimberg, Jakob Mølkjær Slipsager, Rasmus Reinhold Paulsen, Lisbeth Marner, Otto M. Henriksen, M. Dylan Tisdall, Paul Wighton, and Andre van der Kouwe
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Computer science ,Science ,Standardized uptake value ,Tracking (particle physics) ,Multimodal Imaging ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Motion ,0302 clinical medicine ,Match moving ,Neuroimaging ,Neoplasms ,medicine ,Image Processing, Computer-Assisted ,Humans ,Prospective Studies ,Child ,Multidisciplinary ,medicine.diagnostic_test ,Brain ,Reproducibility of Results ,Magnetic resonance imaging ,Magnetic Resonance Imaging ,Positron emission tomography ,Head Movements ,Positron-Emission Tomography ,Medicine ,030217 neurology & neurosurgery ,Biomedical engineering - Abstract
ObjectiveWe demonstrate and evaluate the first markerless motion tracker compatible with PET, MRI, and simultaneous PET/MRI systems for motion correction (MC) of brain imaging.MethodsPET and MRI compatibility is achieved by careful positioning of in-bore vision extenders and by placing all electronic components out-of-bore. The motion tracker is demonstrated in a clinical setup during a pediatric PET/MRI study including 94 pediatric patient scans. PET MC is presented for two of these scans using a customized version of the Multiple Acquisition Frame method. Prospective MC of MRI acquisition of two healthy subjects is demonstrated using a motion-aware MRI sequence. Real-time motion estimates are accompanied with a tracking validity parameter to improve tracking reliability.ResultsFor both modalities, MC shows that motion induced artifacts are noticeably reduced and that motion estimates are sufficiently accurate to capture motion ranging from small respiratory motion to large intentional motion. In the PET/MRI study, a time-activity curve analysis shows image improvements for a patient performing head movements corresponding to a tumor motion of ±5-10 mm with a 19% maximal difference in standardized uptake value before and after MC.ConclusionThe first markerless motion tracker is successfully demonstrated for prospective MC in MRI and MC in PET with good tracking validity.SignificanceAs simultaneous PET/MRI systems have become available for clinical use, an increasing demand for accurate motion tracking and MC in PET/MRI scans has emerged. The presented markerless motion tracker facilitate this demand.
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- 2018
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