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This work presents a comprehensive study on concentrations and elemental composition of total suspended atmospheric particulates for a semi-urban site on the Red Sea coast, and on-board a research vessel, which collected off-shore samples along the Red Sea. We conducted one of the most extended measurement campaigns of atmospheric particulates ever for the region, with continuous measurements over 27 months. The overall mean concentrations (± st. dev.) of TSP were 125 ± 197 µg m−3 for the permanent semi-urban site, and 108 ± 193 µg m−3 for the off-shore mobile site. The region is frequently severely impacted by both localised and widespread dust storms, which on occasion, can increase atmospheric particulate concentrations to levels above mg m−3 (> 1000 µg m−3). Median concentrations were not as variable between seasons, indicating a stable, permanent presence of atmospheric particulates independent of the time of year. The primary chemical elements contributing to particulate mass were Na, Ca, S, Al and Fe. We employed Positive Matrix Factorisation (EPA PMF v5.0.14) to identify different major sources of particulates, which were crustal, marine, fuel oil combustion/secondary sulphate and mixed anthropogenic. The crustal source was characterised by tracers Al, Fe, K, Mg and Sn, and was present to some extent in the other identified sources due to the permanent presence of dust particles in the atmosphere. The fuel oil combustion/secondary sulphate source was identifiable by the almost exclusive presence of S, and to a lesser extent V, emitted from oil combustion as primary emissions and also secondary sulphate formation following the release of S to the atmosphere. A mixed anthropogenic source was characterised by Zn, Ni, Cr, Cu and Pb, emitted from traffic, industry, power generation and water desalination. This study highlights that the natural sources of particulates in this desert region give rise to frequent episodes of extremely poor air quality, and this problem is compounded by significant emissions of anthropogenic pollution, which has an impact across the entire Red Sea basin. Further stringent measures should be adopted to improve air quality across the region and prevent long-term damage to the health of the local population and ecosystems., SI

15 pages, 7 figures, supplementary information https://doi.org/10.1038/s42003-021-02112-2.-- All data generated or analyzed during this study are included in this published article (and its supplementary information files). All raw sequences are publicly available at both DOE’s JGI Integrated Microbial Genomes and Microbiomes (IMG/MER) and the European Nucleotide Archive (ENA). Individual metagenome assemblies, annotation files, and alignment files can be accessed at IMG/MER. All accession numbers are listed in Supplementary Data 1. The co-assembly for the MAG dataset construction can be found through ENA at https://www.ebi.ac.uk/ena with accession number PRJEB40454, the nucleotide sequence for each MAG and their annotation files can be found through BioStudies at https://www.ebi.ac.uk/biostudies with accession S-BSST457 and also in the companion website to this manuscript at https://malaspina-public.gitlab.io/malaspina-deep-ocean-microbiome/.-- All software used in this work is publicly available distributed by their respective developers, and it is described in “Methods”, including the versions and options used. Additional custom scripts to assign taxonomy to the M-geneDB genes and to filter and format FRA results are available through BioStudies at https://www.ebi.ac.uk/biostudies with accession S-BSST457, The deep sea, the largest ocean’s compartment, drives planetary-scale biogeochemical cycling. Yet, the functional exploration of its microbial communities lags far behind other environments. Here we analyze 58 metagenomes from tropical and subtropical deep oceans to generate the Malaspina Gene Database. Free-living or particle-attached lifestyles drive functional differences in bathypelagic prokaryotic communities, regardless of their biogeography. Ammonia and CO oxidation pathways are enriched in the free-living microbial communities and dissimilatory nitrate reduction to ammonium and H2 oxidation pathways in the particle-attached, while the Calvin Benson-Bassham cycle is the most prevalent inorganic carbon fixation pathway in both size fractions. Reconstruction of the Malaspina Deep Metagenome-Assembled Genomes reveals unique non-cyanobacterial diazotrophic bacteria and chemolithoautotrophic prokaryotes. The widespread potential to grow both autotrophically and heterotrophically suggests that mixotrophy is an ecologically relevant trait in the deep ocean. These results expand our understanding of the functional microbial structure and metabolic capabilities of the largest Earth aquatic ecosystem, This work was funded by the Spanish Ministry of Economy and Competitiveness (MINECO) through the Consolider-Ingenio program (Malaspina 2010 Expedition, ref. CSD2008-00077). The sequencing of 58 bathypelagic metagenomes was done by the U.S. Department of Energy Joint Genome Institute, supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02 05CH11231 to SGA (CSP 612 “Microbial metagenomics and transcriptomics from a global deep-ocean expedition”). Additional funding was provided by the project MAGGY (CTM2017-87736-R) to S.G.A. from the Spanish Ministry of Economy and Competitiveness, Grup de Recerca 2017SGR/1568 from Generalitat de Catalunya, and King Abdullah University of Science and Technology (KAUST) under contract OSR #3362 and by funding of the EMFF Program of the European Union (MERCLUB project, Grant Agreement 863584). The ICM researchers have had the institutional support of the “Severo Ochoa Centre of Excellence” accreditation (CEX2019-000928-S). High-Performance computing analyses were run at the Marine Bioinformatics Service (MARBITS, https://marbits.icm.csic.es) of the Institut de Ciències del Mar (ICM-CSIC), Barcelona, Supercomputing Center (Grant BCV-2013-2-0001) and KAUST’s Ibex HPC

The mesozooplankton community was analyzed over a 6-year period (2013-2018) during the post-eruptive stage of the submarine volcano Tagoro, located south of the island of El Hierro (Canary Archipelago, Spain). Nine cruises from March 2013 to March 2018 were carried out in two different seasons, spring (March-April) and autumn (October). A high-resolution study was carried out across the main cones of Tagoro volcano, as well as a large number of reference stations surrounding El Hierro (unaffected by the volcano). The zooplankton community at the reference stations showed a high similarity with more than 85% of the variation in abundance and composition attributable to seasonal differences. Moreover, our data showed an increase in zooplankton abundance in waters affected by the volcano with a higher presence of non-calanoid copepods and a decline in the diversity of the copepod community, indicating that volcanic inputs have a significant effect on these organisms. Fourteen different zooplankton groups were found but copepods were dominant (79%) with 59 genera and 170 species identified. Despite the high species number, less than 30 presented a larger abundance than 1%. Oncaea and Clausocalanus were the most abundant genera followed by Oithona and Paracalanus (60%). Nine species dominated (>2%): O. media, O. plumifera, and O. setigera among the non-calanoids and M. clausi, P. nanus, P. parvus, C. furcatus, C. arcuicornis, and N. minor among the calanoids. After the initial low abundance of the copepods as a consequence of the eruption, an increase was observed in the last years of the study, where besides the small Paracalanus and Clausocalanus, the Cyclopoids seem to have a good adaptive strategy to the new water conditions. The increase in zooplankton abundance and the decline in the copepod diversity in the area affected by the volcano indicate that important changes in the composition of the zooplankton community have occurred. The effect of the volcanic emissions on the different copepods was more evident in spring when the water was cooler and the mixing layer was deeper. Further and longer research is recommended to monitor the zooplankton community in the natural laboratory of the Tagoro submarine volcano., SI

Special issue Polar Microbes.-- 22 pages, 4 figures, 5 tables, supplementary material https://doi.org/10.3390/microorganisms9020317.-- Data Availability Statement: All data is reported in the present article.-- This research is part of POLARCSIC activities, The ocean surface microlayer (SML), with physicochemical characteristics different from those of subsurface waters (SSW), results in dense and active viral and microbial communities that may favor virus–host interactions. Conversely, wind speed and/or UV radiation could adversely affect virus infection. Furthermore, in polar regions, organic and inorganic nutrient inputs from melting ice may increase microbial activity in the SML. Since the role of viruses in the microbial food web of the SML is poorly understood in polar oceans, we aimed to study the impact of viruses on prokaryotic communities in the SML and in the SSW in Arctic and Antarctic waters. We hypothesized that a higher viral activity in the SML than in the SSW in both polar systems would be observed. We measured viral and prokaryote abundances, virus-mediated mortality on prokaryotes, heterotrophic and phototrophic nanoflagellate abundance, and environmental factors. In both polar zones, we found small differences in environmental factors between the SML and the SSW. In contrast, despite the adverse effect of wind, viral and prokaryote abundances and virus-mediated mortality on prokaryotes were higher in the SML than in the SSW. As a consequence, the higher carbon flux released by lysed cells in the SML than in the SSW would increase the pool of dissolved organic carbon (DOC) and be rapidly used by other prokaryotes to grow (the viral shunt). Thus, our results suggest that viral activity greatly contributes to the functioning of the microbial food web in the SML, which could influence the biogeochemical cycles of the water column, This research was part of the ATOS project, funded as part of the Spanish contribution to the International Polar Year (IPY) by the Spanish Ministry of Science and Innovation (POL200600550/CTM). J.A.B.’s work was supported by a PhD fellowship from the Spanish Ministerio de Ciencia e Innovación (FPU grant), With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI)

The global upper ocean has been warming during the last decades accompanied with a chlorophyll-a (Chl-a) and productivity decrease. Whereas subtropical gyres show similar trends, Eastern Boundary Upwelling Systems are thought to increase in productivity due to increased trade winds. This study analyzes recent trends in sea surface temperature (SST), Chl-a, net primary production (NPP) and meridional wind stress in the Eastern North Atlantic subtropical gyre (NASE) in order to examine if the global trends can be detected in open ocean and upwelling areas and how the ocean biota responds. Satellite data of such variables of the last 15–40 years were analyzed to calculate mean trends in upwelling areas in the Canary upwelling system and open ocean areas around the Azores, Madeira and the Canary Islands. Our results show significant warming in the area with a maximum of 2.7°C per century for the Azores. Moreover, a general decreasing trend for Chl-a and NPP seems to be more evident in the permanent upwelling areas, which will be responsible for a loss of 0.13% of the global NPP per century. Our results also highlight a significant expansion of the oceanic desert area of 10% with an increase in unproductive days of up to 84 days in the last 20 years. The competitive relationship of stratification and wind stress in the Canary upwelling system might be a more plausible explanation for the decrease in Chl-a and NPP in upwelling areas linked to the increase in upwelling favorable wind stress and the surface warming., SI

Mayol, Eva ... et al.-- 9 pages, 4 figures, supplementary information https://dx.doi.org/10.1038/s41467-017-00110-9.-- Data availability: The original sequences of airborne microbes reported in this study are available at the Sequence Read Archive (SRA, http://www.ncbi.nlm.nih.gov/sra/SRP074223) under Bioproject ID PRJNA319484 with accession numbers SAMN04903953 to SAMN04904051, The atmosphere plays a fundamental role in the transport of microbes across the planet but it is often neglected as a microbial habitat. Although the ocean represents two thirds of the Earth’s surface, there is little information on the atmospheric microbial load over the open ocean. Here we provide a global estimate of microbial loads and air-sea exchanges over the tropical and subtropical oceans based on the data collected along the Malaspina 2010 Circumnavigation Expedition. Total loads of airborne prokaryotes and eukaryotes were estimated at 2.2 × 1021 and 2.1 × 1021 cells, respectively. Overall 33–68% of these microorganisms could be traced to a marine origin, being transported thousands of kilometres before re-entering the ocean. Moreover, our results show a substantial load of terrestrial microbes transported over the oceans, with abundances declining exponentially with distance from land and indicate that islands may act as stepping stones facilitating the transoceanic transport of terrestrial microbes, This is a contribution to the Malaspina Expedition 2010, funded by the INGENIO 2010 CONSOLIDER program (ref. CDS2008-00077) of the Spanish Ministry of Economy and Competitiveness. [...] E.M. and M.A.J. acknowledge the ‘Junta para la Ampliación de Estudios’ program (JAE-predoc and JAE-doc contracts, respectively) from CSIC, supplied by the European Social Fund. A.M.-A. acknowledges an FPI grant funded by the Spanish Ministry of Science and Innovation. B.G.-G. acknowledges a predoctoral fellowship from the BBVA Foundation

The deep sea, the largest compartment of the ocean, is an essential component of the Earth system, but the functional exploration of its microbial communities lags far behind that of other marine realms. Here we analyze 58 bathypelagic microbial metagenomes from the Atlantic, Indian, and Pacific Oceans in an unprecedented sampling effort from the Malaspina Global Expedition, to resolve the metabolic architecture of the deep ocean microbiome. The Malaspina Deep-Sea Gene Collection, 71% of which consists of novel genes, reveals a strong dichotomy between the functional traits of free-living and particle-attached microorganisms, and shows relatively patchy composition challenging the paradigm of a uniform dark ocean ecosystem. Metagenome Assembled Genomes uncovered 11 potential new phyla, establishing references for deep ocean microbial taxa, and revealed mixotrophy to be a widespread trophic strategy in the deep ocean. These results expand our understanding of the functional diversity, metabolic versatility, and carbon cycling in the largest ecosystem on Earth.One Sentence SummaryA whole community genomic survey of the deep microbiome sheds light on the microbial and functional diversity of the dark ocean.

Ocean acidification and warming are two main consequences of climate change that can directly affect biological and ecosystem processes in marine habitats. The Arctic Ocean is the region of the world experiencing climate change at the steepest rate compared with other latitudes. Since marine planktonic microorganisms play a key role in the biogeochemical cycles in the ocean it is crucial to simultaneously evaluate the effect of warming and increasing CO2 on marine microbial communities. In 20 L experimental microcosms filled with water from a high-Arctic fjord (Svalbard), we examined changes in phototrophic and heterotrophic microbial abundances and processes [bacterial production (BP) and mortality], and viral activity (lytic and lysogenic) in relation to warming and elevated CO2. The summer microbial plankton community living at 1.4°C in situ temperature, was exposed to increased CO2 concentrations (135–2,318 μatm) in three controlled temperature treatments (1, 6, and 10°C) at the UNIS installations in Longyearbyen (Svalbard), in summer 2010. Results showed that chlorophyll a concentration decreased at increasing temperatures, while BP significantly increased with pCO2 at 6 and 10°C. Lytic viral production was not affected by changes in pCO2 and temperature, while lysogeny increased significantly at increasing levels of pCO2, especially at 10°C (R2 = 0.858, p = 0.02). Moreover, protistan grazing rates showed a positive interaction between pCO2 and temperature. The averaged percentage of bacteria grazed per day was higher (19.56 ± 2.77% d-1) than the averaged percentage of lysed bacteria by virus (7.18 ± 1.50% d-1) for all treatments. Furthermore, the relationship among microbial abundances and processes showed that BP was significantly related to phototrophic pico/nanoflagellate abundance in the 1°C and the 6°C treatments, and BP triggered viral activity, mainly lysogeny at 6 and 10°C, while bacterial mortality rates was significantly related to bacterial abundances at 6°C. Consequently, our experimental results suggested that future increases in water temperature and pCO2 in Arctic waters will produce a decrease of phytoplankton biomass, enhancement of BP and changes in the carbon fluxes within the microbial food web. All these heterotrophic processes will contribute to weakening the CO2 sink capacity of the Arctic plankton community.

The microbial response to environmental changes in coastal waters of the eastern Cantabrian Sea was explored for four years by analysing a broad set of environmental variables along with bacterial community metabolism and composition. A recurrent seasonal cycle emerged, consisting of two stable periods, characterized by low bacterial metabolic activity (winter) from October to March, and high bacterial metabolic activity (summer) from May to August. These two contrasting periods were linked by short transition periods in April (TA ) and September (TS ). The phylogenetic groups Alphaproteobacteria and Bacteroidetes were dominant during winter and summer respectively, and their recurrent alternation was mainly driven by the bloom of eukaryotic phytoplankton before TA and the bloom of prokaryotic phytoplankton before TS . Bacterial growth efficiency remained high and stable during the winter and summer periods but dropped during the two short transition periods. Our results suggest that bacterial growth efficiency should be considered a very resilient property that reflects different stages in the adaptation of the bacterial community composition to the environmental changes occurring throughout the seasonal cycle in this coastal ecosystem., SI

12 pages, 4 figures, 3 tables, supplementary material http://journal.frontiersin.org/article/10.3389/fmicb.2017.00241/full#supplementary-material, During the Austral summer 2009 we studied three areas surrounding the Antarctic Peninsula: the Bellingshausen Sea, the Bransfield Strait and the Weddell Sea. We aimed to investigate, whether viruses or protists were the main agents inducing prokaryotic mortality rates, and the sensitivity to temperature of prokaryotic heterotrophic production and mortality based on the activation energy (Ea) for each process. Seawater samples were taken at seven depths (0.1–100 m) to quantify viruses, prokaryotes and protists abundances, and heterotrophic prokaryotic production (PHP). Viral lytic production, lysogeny, and mortality rates of prokaryotes due to viruses and protists were estimated at surface (0.1–1 m) and at the Deep Fluorescence Maximum (DFM, 12–55 m) at eight representative stations of the three areas. The average viral lytic production ranged from 1.0 ± 0.3 × 107 viruses ml−1 d−1 in the Bellingshausen Sea to1.3 ± 0.7 × 107 viruses ml−1 d−1 in the Bransfield Strait, while lysogeny, when detectable, recorded the lowest value in the Bellingshausen Sea (0.05 ± 0.05 × 107 viruses ml−1 d−1) and the highest in the Weddell Sea (4.3 ± 3.5 × 107 viruses ml−1 d−1). Average mortality rates due to viruses ranged from 9.7 ± 6.1 × 104 cells ml−1 d−1 in the Weddell Sea to 14.3 ± 4.0 × 104 cells ml−1 d−1 in the Bellingshausen Sea, and were higher than averaged grazing rates in the Weddell Sea (5.9 ± 1.1 × 104 cells ml−1 d−1) and in the Bellingshausen Sea (6.8 ± 0.9 × 104 cells ml−1 d−1). The highest impact on prokaryotes by viruses and main differences between viral and protists activities were observed in surface samples: 17.8 ± 6.8 × 104 cells ml−1 d−1 and 6.5 ± 3.9 × 104 cells ml−1 d−1 in the Weddell Sea; 22.1 ± 9.6 × 104 cells ml−1 d−1 and 11.6 ± 1.4 × 104 cells ml−1 d−1 in the Bransfield Strait; and 16.1 ± 5.7 × 104 cells ml−1 d−1 and 7.9 ± 2.6 × 104 cells ml−1 d−1 in the Bellingshausen Sea, respectively. Furthermore, the rate of lysed cells and PHP showed higher sensitivity to temperature than grazing rates by protists. We conclude that viruses were more important mortality agents than protists mainly in surface waters and that viral activity has a higher sensitivity to temperature than grazing rates. This suggests a reduction of the carbon transferred through the microbial food-web that could have implications in the biogeochemical cycles in a future warmer ocean scenario, This study was supported by the following projects: ATOS (POL2006-00550/CTM, P.I.: CD.) funded by the Spanish Ministerio de Ciencia e Innovación, YC work was supported by a Ph.D. fellowship from the MINECO (FPI grant)

13 pages, 9 figures, 2 tables, We examined the responses of two different natural arctic plankton communities to warming in an attempt to find temperature thresholds for abrupt changes in growth or biomass. We conducted two experiments in situ using two different plankton communities; incubation temperatures represented the annual variation in these Arctic waters plus 3–4 °C to account for the potential warming expected for the Arctic Ocean during the twenty-first century. We evaluated changes in nutrient and chlorophyll a concentrations, primary production, cell abundances, and growth rates as well as cell biovolume and percentage of living cells for the main groups found during our study. Phytoplankton communities were composed of diatoms, Phaeocystis sp., Micromonas, as well as other flagellates. Results indicate a decrease in chlorophyll a concentration and growth rate at the highest temperatures tested. We also found a differing effect on cell abundance and growth rates depending on the taxonomic group or cell size: diatom abundance decreased with warming while small-sized phytoplankton showed an increasing trend at the intermediate temperature treatments. Biovolume estimates also tended to decrease with increasing temperature. We find a perceptible change in trends at intermediate temperature treatments for most of the parameters which suggests a possible thermal threshold around 5–6 °C for the arctic plankton communities examined here, This study was supported by the project Arctic Tipping Points (ATP, contract # 226248) from the European Union. A. Coello-Camba was supported by a grant BES-2007-15193 from the Spanish Ministry of Science and Innovation

Dilution solves the recalcitrance question The deep ocean is full of dissolved organic carbon, some of which has remained unchanged for thousands of years. What makes these compounds so resistant to microbial degradation? Perhaps their chemical structures make them intrinsically difficult to metabolize? In contrast, Arrieta et al. show that they are simply too dilute to be viable sources of energy for microorganisms (see the Perspective by Middleburg). Further experiments show that if these seemingly recalcitrant organic molecules are concentrated, the ambient microbes can consume them. Science , this issue p. 331 ; see also p. 290

Climate warming is especially severe in the Arctic, where the average temperature is increasing 0.4 C per decade, two to three times higher than the global average rate. Furthermore, the Arctic has lost more than half of its summer ice extent since 1980 and predictions suggest that the Arctic will be ice free in the summer as early as 2050, which could increase the rate of warming. Predictions based on the metabolic theory of ecology assume that temperature increase will enhance metabolic rates and thus both the rate of primary production and respiration will increase. However, these predictions do not consider the specific metabolic balance of the communities. We tested, experimentally, the response of Arctic plankton communities to seawater temperature spanning from 1 C to 10 C. Two types of communities were tested, open-ocean Arctic communities from water collected in the Barents Sea and Atlantic influenced fjord communities from water collected in the Svalbard fjord system. Metabolic rates did indeed increase as suggested by metabolic theory, however these results suggest an experimental temperature threshold of 5 C, beyond which the metabolism of plankton communities shifts from autotrophic to heterotrophic. This threshold is also validated by field measurements across a range of temperatures which suggested a temperature 5.4 C beyond which Arctic plankton communities switch to heterotrophy. Barents Sea communities showed a much clearer threshold response to temperature manipulations than fjord communities. © Author(s) 2013.

Biological nitrogen fixation by diazotrophic bacteria in seagrass rhizosphere and leaf epiphytic community is an important source of nitrogen required for plant growth. However, the presence of endophytic diazotrophs remains unclear in seagrass tissues. Here, we assess the presence, diversity and taxonomy of nitrogen-fixing bacteria within surface-sterilized roots of Posidonia oceanica. Moreover, we analyze the nitrogen isotopic signature of seagrass tissues in order to notice atmospheric nitrogen fixation. We detected nitrogen-fixing bacteria by nifH gene amplification in 13 out of the 78 roots sampled, corresponding to 9 locations out of 26 meadows. We detected two different types of bacterial nifH sequences associated with P. oceanica roots, which were closely related to sequences previously isolated from the rhizosphere of a salt marsh cord grass and a putative anaerobe. Nitrogen content of seagrass tissues showed low isotopic signatures in all the sampled meadows, pointing out the atmospheric origin of the assimilated nitrogen by seagrasses. However, this was not related with the presence of endophytic nitrogen fixers, suggesting the nitrogen fixation occurring in rhizosphere and in the epiphytic community could be an important source of nitrogen for P. oceanica. The low diversity of nitrogen-fixing bacteria reported here suggests species-specific relationships between diazotrophs and P. oceanica, revealing possible symbiotic interactions that could play a major role in nitrogen acquisition by seagrasses in oligotrophic environments where they form lush meadows., This study was funded by the projects MEDEICG and ESTRESX of the Spanish Marine Science and Technology Program (CTM2009-07013, CTM2012-32603). N.G.B. was supported by a PhD grant from the Government of Balearic Islands (reference FPI04 43126005Q) and J.M.A. by a contract of the Ramón y Cajal program of the Spanish Ministry of Economy and Competitiveness

Carlos M. Duarte et al., The Arctic marine ecosystem contains multiple elements that present alternative states. The most obvious of which is an Arctic Ocean largely covered by an ice sheet in summer versus one largely devoid of such cover. Ecosystems under pressure typically shift between such alternative states in an abrupt, rather than smooth manner, with the level of forcing required for shifting this status termed threshold or tipping point. Loss of Arctic ice due to anthropogenic climate change is accelerating, with the extent of Arctic sea ice displaying increased variance at present, a leading indicator of the proximity of a possible tipping point. Reduced ice extent is expected, in turn, to trigger a number of additional tipping elements, physical, chemical, and biological, in motion, with potentially large impacts on the Arctic marine ecosystem., This is a contribution to the Arctic Tipping Points project (www.eu-atp.org) funded by FP7 of the European Union (contract #226248).

The marine realm represents 70% of the surface of the biosphere and contains a rich variety of organisms, including more than 34 of the 36 living phyla, some of which are only found in the oceans. The number of marine species used by humans is growing at unprecedented rates, including the rapid domestication of marine species for aquaculture and the discovery of natural products and genes of medical and biotechnological interest in marine biota. The rapid growth in the human appropriation of marine genetic resources (MGRs), with over 18,000 natural products and 4,900 patents associated with genes of marine organisms, with the latter growing at 12% per year, demonstrates that the use of MGRs is no longer a vision but a growing source of biotechnological and business opportunities. The diversification of the use of marine living resources by humans calls for an urgent revision of the goals and policies of marine protected areas, to include the protection of MGRs and address emerging issues like biopiracy or benefit sharing. Specific challenges are the protection of these valuable resources in international waters, where no universally accepted legal framework exists to protect and regulate the exploitation of MGRs, and the unresolved issues on patenting components of marine life. Implementing steps toward the protection of MGRs is essential to ensure their sustainable use and to support the flow of future findings of medical and biotechnological interest, This is a contribution to the MALASPINA 2010 project, funded by the CONSOLIDER-Ingenio 2010 program of the Spanish Ministry of Science and Technology (Reference CSD2008-00077

The aim of this study was to explore the variation and regulation of bacterial carbon processing at a coastal oligotrophic site of the Island of Majorca in the Mediterranean Sea. In situ bacterial production (BP), respiration (BR), growth efficiency, and carbon demand in relation to environmental parameters were studied over an annual cycle. In addition, the response of bacterial carbon processing to an experimental resource (phosphate) and temperature manipulations was tested. While concentrations of dissolved organic carbon (DOC) and phosphorus were fairly stable over the year, BP and BR varied 65-fold and 79-fold, respectively. Addition of phosphate stimulated both BP and BR during most of the year, suggesting that phosphorus limitation keeps a tight rein on bacterial DOC utilization. Both BP and BR responded positively to a 2 degrees C experimental increase, but at higher temperature increases BP and BR leveled off or decreased. In situ BP and BR were positively related to temperature, suggesting that elevated water temperature would yield increased BP and BR. BR responded more strongly to temperature than BP, suggesting that increased temperature may result in a decrease in bacterial growth efficiency. (Less)

Johnna M. Holding et al., The Arctic Ocean is warming at two to three times the global rate and is perceived to be a bellwether for ocean acidification. Increased CO concentrations are expected to have a fertilization effect on marine autotrophs, and higher temperatures should lead to increased rates of planktonic primary production. Yet, simultaneous assessment of warming and increased CO on primary production in the Arctic has not been conducted. Here we test the expectation that CO-enhanced gross primary production (GPP) may be temperature dependent, using data from several oceanographic cruises and experiments from both spring and summer in the European sector of the Arctic Ocean. Results confirm that CO enhances GPP (by a factor of up to ten) over a range of 145-2,099μatm; however, the greatest effects are observed only at lower temperatures and are constrained by nutrient and light availability to the spring period. The temperature dependence of CO-enhanced primary production has significant implications for metabolic balance in a warmer, CO-enriched Arctic Ocean in the future. In particular, it indicates that a twofold increase in primary production during the spring is likely in the Arctic., This research was supported by the Arctic Tipping Points project (http://www.eu-atp.org), funded by the Framework Program 7 of the European Union (no. 226248), the ATOS and ARCTICMET projects, funded by the Spanish Ministry of Economy and Competitiveness (no. POL2006-00550/CTM and CTM2011-15792-E, respectively), and the CARBONBRIDGE project, funded by the Norwegian Research Council (no. 226415). J.M.H. was supported by a JAE fellowship (CSIC, Spain). M.S.-M. was funded by Fundación 'La Caixa' PhD grants (Spain)

15 pages, 5 figures, data accessibility, supporting information http://dx.doi.org/10.1111/mec.13419, The free-living (FL) and particle-attached (PA) marine microbial communities have repeatedly been proved to differ in their diversity and composition in the photic ocean and also recently in the bathypelagic ocean at a global scale. However, although high taxonomic ranks exhibit preferences for a PA or FL mode of life, it remains poorly understood whether two clear lifestyles do exist and how these are distributed across the prokaryotic phylogeny. We studied the FL (, This research was funded by the Spanish Ministry of Economy and Competitiveness Science and Innovation through the Consolider-Ingenio programme (project Malaspina 2010 Expedition, ref. CSD2008–00077. [...] Sequencing at the JGI was supported by U.S. Department of Energy (DOE) JGI 2011 Microbes Program grant CSP 387 grant to S.G.A. The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. [...] Additional funding was provided by the Spanish Ministry of Science and Innovation grant CGL2011-26848/BOS MicroOcean PANGENOMICS and the Spanish Ministry of Economy and Competitivity grant MALASPINOMICS (CTM2011-15461-E). GS and FMCC held a Ph.D. JAE-Predoc (CSIC) and an FPI (MICINN) fellowships, respectively. SGA was supported by a project FP7-OCEAN-2011 ‘Micro B3’

Pernice, Massimo ... et. al.-- 11 pages, 7 figures, 3 tables, The dark ocean is one of the largest biomes on Earth, with critical roles in organic matter remineralization and global carbon sequestration. Despite its recognized importance, little is known about some key microbial players, such as the community of heterotrophic protists (HP), which are likely the main consumers of prokaryotic biomass. To investigate this microbial component at a global scale, we determined their abundance and biomass in deepwater column samples from the Malaspina 2010 circumnavigation using a combination of epifluorescence microscopy and flow cytometry. HP were ubiquitously found at all depths investigated down to 4000 m. HP abundances decreased with depth, from an average of 72±19 cells ml-1 in mesopelagic waters down to 11±1 cells ml-1 in bathypelagic waters, whereas their total biomass decreased from 280±46 to 50±14 pg C ml-1. The parameters that better explained the variance of HP abundance were depth and prokaryote abundance, and to lesser extent oxygen concentration. The generally good correlation with prokaryotic abundance suggested active grazing of HP on prokaryotes. On a finer scale, the prokaryote:HP abundance ratio varied at a regional scale, and sites with the highest ratios exhibited a larger contribution of fungi molecular signal. Our study is a step forward towards determining the relationship between HP and their environment, unveiling their importance as players in the dark ocean's microbial food web. © 2015 International Society for Microbial Ecology All rights reserved, This study was supported by the Spanish Ministry of Science and Innovation through project Consolider-Ingenio Malaspina 2010 (CSD2008-00077) (to CMD) and FLAME (CGL2010-16304) (to RM)

The evolution of marine microbes over billions of years predicts that the composition of microbial communities should be much greater than the published estimates of a few thousand distinct kinds of microbes per liter of seawater. By adopting a massively parallel tag sequencing strategy, we show that bacterial communities of deep water masses of the North Atlantic and diffuse flow hydrothermal vents are one to two orders of magnitude more complex than previously reported for any microbial environment. A relatively small number of different populations dominate all samples, but thousands of low-abundance populations account for most of the observed phylogenetic diversity. This >rare biosphere> is very ancient and may represent a nearly inexhaustible source of genomic innovation. Members of the rare biosphere are highly divergent from each other and, at different times in earth's history, may have had a profound impact on shaping planetary processes. © 2006 by The National Academy of Sciences of the USA.

Natural floodplains play an essential role in the processing and decomposition of organic matter and in the self-purification ability of rivers, largely due to the activity of bacteria. Knowledge about the composition of bacterial communities and its impact on organic-matter cycling is crucial for the understanding of ecological processes in river-floodplain systems. Particle-associated and free-living bacterial assemblages from the Danube River and various floodplain pools with different hydrological characteristics were investigated using terminal restriction fragment length polymorphism analysis. The particle-associated bacterial community exhibited a higher number of operational taxonomic units (OTUs) and was more heterogeneous in time and space than the free-living community. The temporal dynamics of the community structure were generally higher in isolated floodplain pools. The community structures of the river and the various floodplain pools, as well as those of the particle-associated and free-living bacteria, differed significantly. The compositional dynamics of the planktonic bacterial communities were related to changes in the algal biomass, temperature, and concentrations of organic and inorganic nutrients. The OTU richness of the free-living community was correlated with the concentration and origin of organic matter and the concentration of inorganic nutrients, while no correlation with the OTU richness of the particle-associated assemblage was found. Our results demonstrate the importance of the river-floodplain interactions and the influence of damming and regulation on the bacterial-community composition.

The influence of the quality of organic matter on the hydrolysis of polymers by marine bacteria was investigated in microcosms containing aggregates created in rolling tanks. Two types of microcosms were analysed: microcosms type M1 from unaltered seawater and microcosms type M2 from phytoplankton cultures. Kinetics of aminopeptidase, �-glucosidase and �-glucosidase were measured in the ambient water and the aggregates in the two types of microcosms. Bacteria attached to aggregates expressed enzymes with Km values higher than those of the bacteria in the ambient water for the three hydrolytic activities analysed in both types of microcosms. Attached bacteria showed higher rates of polymer hydrolysis than free-living bacteria only in microcosms M2 created from freshly produced phytoplanktonic material, while free-living bacteria were more active than attached bacteria in the microcosms M1 containing unaltered seawater. The ratio Vmax/Km, which describes the ability of enzymes to compete at low substrate concentration, shows that free-living bacteria are more efficient at dealing with low substrate concentrations in microcosms derived from natural seawater, where the liquid phase may be depleted of utilizable dissolved organic matter, than in the microcosms derived from phytoplankton cultures. Our data suggest that the hydrolytic activities of both attached and free-living bacteria are significantly influenced by the quality of the aggregates and the consequences of this influence are discussed.

Bacterial enzymatic hydrolysis of high molecular weight organic matter is the rate-limiting step in the bacterially mediated carbon cycling in the global ocean. Despite the importance of this process, only bulk measurements of these hydrolytic activities are available, and the dynamics and diversity of the ectohydrolases involved in the cleavage of high molecular weight organic matter are poorly understood. In this study we monitored the dynamics of bacterial β-glucosidase diversity during the wax and wane of a coastal phytoplankton bloom using a newly developed capillary electrophoretic assay. Up to eight different β-glucosidases were detected in a single sample and 11 over the whole study period, revealing a previously unnoticed β-glucosidase diversity. A close link was found between the temporal succession ofβ-glucosidase diversity and bacterioplankton species richness as determined by terminal-restriction fragment length polymorphism analysis. This indicates that the regulation of the β-glucosidase activity and diversity was driven by shifts in the bacterial community structure rather than by simple induction of enzyme expression within a stable bacterioplankton community.

The relationship between dust deposition and surface water metal concentrations is poorly understood. Dissolution, solubility, and partitioning reactions of trace metals from dust particles are governed by complex chemical, biological, and physical processes occurring in the surface ocean. Despite that, the role of the sea surface microlayer (SML), a thin, but fundamental component modulating the air-sea exchange of materials has not been properly evaluated. Our study revealed that the SML of the Mediterranean Sea is enriched with bioactive trace metals (i.e., Cd, Co, Cu, and Fe), ranging from 8 (for Cd) to 1000 (for Fe) times higher than the dissolved metal pool in the underlying water column. The highest enrichments were spatially correlated with the atmospheric deposition of mineral particles. Our mass balance results suggest that the SML in the Mediterranean Sea contains about 2 tons of Fe. However, we did not detect any trends between the concentrations of metals in SML with the subsurface water concentrations and biomass distributions. These findings suggest that future studies are needed to quantify the rate of metal exchange between the SML and the bioavailable pool and that the SML should be considered to better understand the effect of atmospheric inputs on the biogeochemistry of trace metals in the ocean., This work was supported by the project THRESHOLDS (CTM2005-24238-E) funded by the EU-FP6.

The net community production (NCP) of plankton communities affects their role as sources or sinks of atmospheric CO2. Most estimates of NCP have been made by enclosing communities in bottles, generally glass borosilicate, that remove ultraviolet (UV)B and part of UVA wavelengths. A series of experiments were conducted to test whether NCP values from communities incubated excluding UVB (+ part of UVA) radiation (i.e., in glass borosilicate) differ from those of communities receiving the full solar radiation spectrum (i.e., incubated with quartz bottles) and to explore the effect of UV radiation on the respiration rates and bacterial production in these communities. Plankton NCP tended to be 43% lower, on average, when the rates were measured under full solar radiation than when UVB (+ part of UVA) was removed. Dark respiration was significantly enhanced after exposure to the full solar spectrum for most communities, showing lower values when previously incubated in a light environment free of UVB (-50%) or in the dark (-62%). Bacterial production was inhibited by natural sunlight but increased, as observed for community respiration, when transferred to the dark. Communities previously exposed to full solar spectrum showed the greatest increase in bacterial production when allowed to recover in the dark. The net result of these responses were an increase in community respiration and decline in net community production over 24 h, indicating that UVB radiation plays a major role in the metabolic balance of the ocean's surface ecosystem. © 2014, by the Association for the Sciences of Limnology and Oceanography, Inc., This study was supported by the Conselleria d’Economía, Hisenda i Inovation, Government of the Balearic Islands to the Grup d’Investigació Competitiu: Grupo de Analisis de Ecosistemas Mediterraneos (GAEM) and by the research projects Evaluacion del Impacto del Cambio Global en Ecosistemas Marinos Mediterraneos (MEDEICG, CTM2009-07013); Remolinos Oceanicos y Deposicion Atmosferica (RODA, CTM2004-06842-C03-02/MAR); Atmospheric inputs of organic carbon and pollutants to the polar ocean: Rates, significance, and Outlook (ATOS, POL2006-00550/CTM), funded by the Spanish Ministry of Science and Innovation; and StressX-Synergia y antagonismo entre multiples estreses en ecosistemas marinos Mediterraneos (CTM2012-32603), funded by the Spanish Ministry of Economy and Competitiveness

© 2014 Mayol, Jiménez, Herndl, Duarte and Arrieta. Airborne transport of microbes may play a central role in microbial dispersal, the maintenance of diversity in aquatic systems and in meteorological processes such as cloud formation. Yet, there is almost no information about the abundance and fate of microbes over the oceans, which cover >70% of the Earth's surface and are the likely source and final destination of a large fraction of airborne microbes. We measured the abundance of microbes in the lower atmosphere over a transect covering 17° of latitude in the North Atlantic Ocean and derived estimates of air-sea exchange of microorganisms from meteorological data. The estimated load of microorganisms in the atmospheric boundary layer ranged between 6×104 and 1.6×107 microbes per m2 of ocean, indicating a very dynamic air-sea exchange with millions of microbes leaving and entering the ocean per m2 every day. Our results show that about 10% of the microbes detected in the boundary layer were still airborne 4 days later and that they could travel up to 11,000 km before they entered the ocean again. The size of the microbial pool hovering over the North Atlantic indicates that it could play a central role in the maintenance of microbial diversity in the surface ocean and contribute significantly to atmospheric processes., This is a contribution to the Malaspina Expedition 2010, funded by the INGENIO 2010 CONSOLIDER program (ref. CDS2008-00077) of the Spanish Ministry of Economy and Competitiveness, and projects from the Austrian Science Fund (FWF, I486-B09 and P23234-B11) and project MEDEA from the European Research Council under the European Community's Seventh Framework Programme (FP7/2007-2013, ERC grant agreement No. 268595). Eva Mayol and María A. Jiménez acknowledge the “Junta para la Ampliación de Estudios” program (JAE-predoc and JAE-doc contracts, respectively) from CSIC, supplied by the European Social Fund. Jesús M. Arrieta was supported by a “Ramón y Cajal” fellowship by the former Ministry of Science and Innovation of the Spanish Government

Phytoplankton-derived model particles were created in laboratory from a mixture of autoclaved diatom cultures. These particles were colonized by a marine bacterial community and incubated in rolling tanks in order to examine the relationship between aminopeptidase activity and leucine uptake. Bacteria inhabiting particles and ambient water were characterized for abundance, biovolume, aminopeptidase activity, leucine uptake, and growth rate. Particles were a less favorable habitat than ambient water for bacterial growth since growth rates of particle-attached bacteria were similar or even lower than those of free-living bacteria. During the first ∼100 h of the particle decomposition process, there were not statistically significant differences in the aminopeptidase activity:leucine uptake ratio between attached and free-living bacteria. From ∼100 h to ∼200 h, this ratio was higher for attached bacteria than for free-living bacteria. This indicates an uncoupling of aminopeptidase activity and leucine uptake. During this period, attached and free-living bacteria showed similar hydrolytic activities on a cell-specific basis. In the free-living bacterial community, variations in aminopeptidase activity per cell were associated with variations in leucine uptake per cell and growth rates. However, in the attached bacterial community, when leucine uptake and growth rates decreased, aminopeptidase activity remained constant. Thus, after ∼100 h, particle-attached bacteria were not taking advantage of their high aminopeptidase activity; consequently the hydrolysed amino acids were released into the ambient water, supporting the growth of free-living bacteria. These results demonstrate that over the particle decomposition process, the relationship between hydrolysis and uptake of the protein fraction shows different patterns of variation for attached and free-living bacterial communities. However, in our experiments, this uncoupling was not based on a hyperproduction of enzymes by attached bacteria, but on lower uptake rates when compared to the free-living bacteria.

The effect of Arctic warming, which is 3 times faster than the global average, on microbial communities was evaluated experimentally to determine how increasing temperatures affect bacterial and viral abundance and production, protist community composition, and bacterial loss rates (bacterivory and lysis) in 2 contrasting Arctic marine systems. In July 2009, we collected samples from open Arctic waters in the Barents Sea and Atlantic-influenced waters in Isfjorden, Svalbard Islands (Fjord waters). The samples were used in 2 microcosm experiments at 7 temperatures, ranging from 1.0 to 10.0°C. In the open Arctic microbial community, collected at

Assmy, Philipp ... et. al.-- 6 pages, 4 figures, Diatoms of the iron-replete continental margins and North Atlantic are key exporters of organic carbon. In contrast, diatoms of the iron-limited Antarctic Circumpolar Current sequester silicon, but comparatively little carbon, in the underlying deep ocean and sediments. Because the Southern Ocean is the major hub of oceanic nutrient distribution, selective silicon sequestration there limits diatom blooms elsewhere and consequently the biotic carbon sequestration potential of the entire ocean. We investigated this paradox in an in situ iron fertilization experiment by comparing accumulation and sinking of diatom populations inside and outside the iron-fertilized patch over 5 wk. A bloom comprising various thin- and thick-shelled diatom species developed inside the patch despite the presence of large grazer populations. After the third week, most of the thinner-shelled diatom species underwent mass mortality, formed large, mucous aggregates, and sank out en masse (carbon sinkers). In contrast, thicker-shelled species, in particular Fragilariopsis kerguelensis, persisted in the surface layers, sank mainly empty shells continuously, and reduced silicate concentrations to similar levels both inside and outside the patch (silica sinkers). These patterns imply that thick-shelled, hence grazer-protected, diatom species evolved in response to heavy copepod grazing pressure in the presence of an abundant silicate supply. The ecology of these silica-sinking species decouples silicon and carbon cycles in the iron-limited Southern Ocean, whereas carbon- sinking species, when stimulated by iron fertilization, export more carbon per silicon. Our results suggest that large-scale iron fertilization of the silicate-rich Southern Ocean will not change silicon sequestration but will add carbon to the sinking silica flux, P.A. was supported through Deutsche Forschungsgemeinschaft–Cluster of Excellence “The Ocean in the Earth System” and the Centre for Ice, Climate and Ecosystems at the Norwegian Polar Institute

Incubation (in vitro) and incubation-free (in situ) methods, each with their own advantages and limitations, have been used to derive estimates of net community metabolism in the oligotrophic subtropical gyres of the open ocean. The hypothesis that heterotrophic communities are prevalent in most oligotrophic regions is consistent with the available evidence and supported by scaling relationships showing that heterotrophic communities prevail in areas of low gross primary production, low chlorophyll a, and warm water, conditions found in the oligotrophic ocean. Heterotrophic metabolism can prevail where heterotrophic activity is subsidized by organic carbon inputs from the continental shelf or the atmosphere and from nonphotosynthetic autotrophic and mixotrophic metabolic pathways. The growth of the oligotrophic regions is likely to be tilting the metabolic balance of the ocean toward a greater prevalence of heterotrophic communities.

International audience; Fertilization of the ocean by adding iron compounds has induced diatom-dominated phytoplankton blooms accompanied by considerable carbon dioxide drawdown in the ocean surface layer. However, because the fate of bloom biomass could not be adequately resolved in these experiments, the timescales of carbon sequestration from the atmosphere are uncertain. Here we report the results of a five-week experiment carried out in the closed core of a vertically coherent, mesoscale eddy of the Antarctic Circumpolar Current, during which we tracked sinking particles from the surface to the deep-sea floor. A large diatom bloom peaked in the fourth week after fertilization. This was followed by mass mortality of several diatom species that formed rapidly sinking, mucilaginous aggregates of entangled cells and chains. Taken together, multiple lines of evidence--although each with important uncertainties--lead us to conclude that at least half the bloom biomass sank far below a depth of 1,000 metres and that a substantial portion is likely to have reached the sea floor. Thus, iron-fertilized diatom blooms may sequester carbon for timescales of centuries in ocean bottom water and for longer in the sediments.

Bacterial endophytes are crucial for the survival of many terrestrial plants, but little is known about the presence and importance of bacterial endophytes of marine plants. We conducted a survey of the endophytic bacterial community of the long-living Mediterranean marine angiosperm Posidonia oceanica in surface-sterilized tissues (roots, rhizomes, and leaves) by Denaturing Gradient Gel Electrophoresis (DGGE). A total of 26 Posidonia oceanica meadows around the Balearic Islands were sampled, and the band patterns obtained for each meadow were compared for the three sampled tissues. Endophytic bacterial sequences were detected in most of the samples analyzed. A total of 34 OTUs (Operational Taxonomic Units) were detected. The main OTUs of endophytic bacteria present in P. oceanica tissues belonged primarily to Proteobacteria (¿, ¿, and ¿ subclasses) and Bacteroidetes. The OTUs found in roots significantly differed from those of rhizomes and leaves. Moreover, some OTUs were found to be associated to each type of tissue. Bipartite network analysis revealed differences in the bacterial endophyte communities present on different islands. The results of this study provide a pioneering step toward the characterization of the endophytic bacterial community associated with tissues of a marine angiosperm and reveal the presence of bacterial endophytes that differed among locations and tissue types.

Climate warming is especially severe in the Arctic, where the average temperature is increasing 0.4 °C per decade, two to three times higher than the global average rate. Furthermore, the Arctic has lost more than half its summer ice extent since 1980 and predictions suggest that the Arctic will be ice free in the summer as early as 2050, which could increase rate of warming. Predictions based on the metabolic theory of ecology assume that temperature increase will enhance metabolic rates and thus both the rate of primary production and respiration will increase. However, these predictions do not consider the specific metabolic balance of the communities. We tested experimentally the response of Arctic plankton communities to seawater temperature spanning from 1 °C to 10 °C. Two types of communities were tested, open-ocean Arctic communities from water collected in the Barents Sea and Atlantic influenced fjord communities from water collected in the Svalbard fjord system. Metabolic rates did indeed increase as suggested by metabolic theory, however these results suggest a temperature threshold of 5 °C, beyond which the metabolism of plankton communities shifts from autotrophic to heterotrophic. Barents Sea communities showed a much clearer threshold response to temperature manipulations than fjord communities.

measured in meadows located around the largest and most densely populated island (Mallorca Island). There was a general tendency for Ag concentration to decrease with time (up to 80% from 1990 to 2005 in sample from Mallorca Island), which could be attributed to a reduction of the anthropogenic sources. Nickel and Zn concentrations were the unique elements that showed a consistent temporal trend in all samples, increasing their concentrations since year 1996 at all studied stations; this trend matched with the time series of UV‐absorbing aerosols particles in the air (i.e., aerosols index) over the Mediterranean region (r 2 : 0.78, p < 0.001 for Cabrera Island), suggesting that P. oceanica could be an efficient recorder of dust events. A comparison of enrichment factors in rhizomes relative to average crustal material indicates that suspended aerosol is also the most likely source for Cr and Fe to P. oceanica.

Global warming and the associated ice melt are leading to an increase in the organic carbon in the Arctic Ocean. We evaluated the effects of ice melt on bacterioplankton at 21 stations in the Greenland Sea and Arctic Ocean in the summer of 2007, when a historical minimum of Arctic ice coverage was measured. Polar Surface Waters, which have a low temperature and low salinity and originate mainly from melted ice, contained a very low abundance of bacteria (7.01 × 105 ± 2.20 × 105 cells ml-1); however, these bacteria had high specific bacterial production (2.40 ± 1.61 fmol C bac-1 d-1) compared to those in Atlantic Waters. Specifically, bacterioplankton in Polar Surface Waters showed a preference for utilizing carbohydrates and had significantly higher specific activities of the glycosidases assayed, i. e. β-glucosidase, xylosidase, arabinosidase and cellobiosidase. Furthermore, bacterioplankton in Polar Sea Waters showed preferential growth on some of the carbohydrates in the Biolog Ecoplate, such as d-cellobiose and N-acetyl-d-glucosamine. Our results suggest that climate change and the associated melting of Arctic ice might induce changes in bacterioplankton functional diversity by enhancing the turnover of carbohydrates. Since organic aggregates are largely composed of polysaccharides, higher solubilization of aggregates might modify the carbon cycle, weaken the biological pump and have biogeochemical and ecological implications for the future Arctic Ocean. © 2010 Springer-Verlag., Financial support was provided by the Spanish Ministry of Science and Innovation (MICINN) projects: ATOS (POL2006-00550/CTM) to C.M.D, STORM (CTM2009-09352) to M.M.S, and MICROVIS (CTM2007-62140) to D.V.J.A.B. was awarded a Ph.D. fellowship by the MICINN (FPU grant).

During the last few years, extensive sea ice melting in the Arctic due to climate change has been detected, which could potentially modify the organic carbon fluxes in these waters. In this study, the effect of sea ice melting on bacterial carbon channelling by phages and protists has been evaluated in the northern Greenland Sea and Arctic Ocean. Grazing on bacteria by protists was evaluated using the FLB disappearance method. Lysis of bacteria due to viral infections was measured using the virus reduction approach. Losses of bacterial production caused by protists (PMMBP) dominated losses caused by viruses (VMMBP) throughout the study. Lysogenic viral production was detected in 7 out of 21 measurements and constituted from 33.9 to 100.0% of the total viral production. Significantly higher PMMBP and lower VMMBP were detected in waters affected by ice melting compared with unaffected waters. Consequently, significantly more bacterial carbon was channelled to the higher trophic levels in affected waters (13.05 ± 5.98 μgC l-1 day-1) than in unaffected waters (8.91 ± 8.33 μgC l-1 day-1). Viruses channelled 2.63 ± 2.45 μgC l-1 day-1 in affected waters and 4.27 ± 5.54 μgC l-1 day-1 in unaffected waters. We conclude that sea ice melting in the Arctic could modify the carbon flow through the microbial food web. This process may be especially important in the case of massive sea ice melting due to climate change. © 2010 Springer-Verlag., This study was supported by the following projects: ATOS, PROCAVIR and MICROVIS (POL2006-00550/CTM, CTM2004-04404-CO2-00/MAR, CTM2007-62140) funded by the Spanish Ministerio de Ciencia e Innovación and by the E.U. project Arctic Tipping Points (ATP, contract

Chromophoric dissolved organic matter (CDOM), the optically active fraction of dissolved organic matter, is primarily generated by pelagic organisms in the open ocean. In this study, we experimentally determined the quantity and spectral quality of CDOM generated by bacterioplankton using two different substrates (with and without photoproducts) and by Antarctic krill Euphausia superba and evaluated their potential contributions to CDOM dynamics in the peninsular region of the Southern Ocean. CDOM was generated by bacteria in all experiments, and the presence of photoproducts influenced both the quantity and the spectral quality of the resultant CDOM. We confirmed a direct link between bacterial production and CDOM generation, which yielded in situ CDOM duplication times from 31 to 33 d. Antarctic krill as a direct source of CDOM was also confirmed experimentally. We estimated that CDOM generation by krill would lead to CDOM duplication times from 0.48 to 0.80 d within krill swarms. Our findings highlight the potential significance of bacteria and Antarctic krill swarms in the generation of CDOM and underscore the dynamic nature of CDOM in this area.