14 results on '"Jia Yun Zhu"'
Search Results
2. Learning behavior of Neoseiulus californicus (Acari: Phytoseiidae) can help in adapting from feeding on alternative prey to target prey
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Jia-Yun Zhu, Jing Liu, Li Qin, Feng Xiao, Jian-Feng Liu, and Rong Xiao
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Ecology ,Insect Science ,Ecology, Evolution, Behavior and Systematics - Abstract
Neoseiulus californicus (Acari: Phytoseiidae) is a commercialized predatory mite that is used as a biological control agent against Tetranychus urticae (Acari: Tetranychidae). Long-term feeding on alternative prey could impact the predatory capacity of N. californicus. Although most studies on the learning behavior of predatory mites have indicated that learning behavior could help them adapt from feeding on thrips (alternative prey) to spider mites (target prey), the role of learning behavior in adapting from feeding on astigmatid mites to spider mites has not been studied thus far. Therefore, this study explored the learning behavior of N. californicus in adapting from feeding on alternative prey (Oulenziella bakeri [Acari: Winterschmidtiidae]) to target mites (T. urticae). The attack latencies, prey preferences, and functional responses of female N. californicus were compared between two strains, N. californicus fed on T. urticae (TU) or O. bakeri (OB), and a learning behavior (LB) treatment. The results showed that the attack latency of OB strain was significantly longer than those of TU strain and LB treatment; OB strain did not show obvious prey preference between protonymphs of T. urticae and O. bakeri; and the functional response among TU, OB, and LB-treated strains were not significantly different. Our results demonstrated that long-term feeding on alternative prey had little effect on the predatory ability of N. californicus. To a certain extent, learning behavior can help N. californicus shift from feeding on alternative prey to target prey. Therefore, in the long run, it is reasonable to rear N. californicus on O. bakeri.
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- 2022
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3. Cloning and differential expression of three heat shock protein genes associated with thermal stress from the wolf spider Pardosa pseudoannulata (Araneae: Lycosidae)
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Jian-Jun Guo, Rong Xiao, Jia-Yun Zhu, Dao-Chao Jin, Di Fu, Liang-Yu Sun, Jing Liu, and Qin Li
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0106 biological sciences ,0301 basic medicine ,Cloning ,Genetics ,Wolf spider ,Biology ,biology.organism_classification ,01 natural sciences ,law.invention ,Hsp70 ,010602 entomology ,03 medical and health sciences ,030104 developmental biology ,Rapid amplification of cDNA ends ,law ,Insect Science ,Heat shock protein ,Complementary DNA ,Gene ,Polymerase chain reaction - Abstract
Pardosa pseudoannulata is the main predatory natural enemy of crop pests in a paddy ecosystem. When P. pseudoannulata is exposed to unfavorable temperature conditions, the response of heat shock proteins could resist the damage, and is therefore, conducive to the organism’s rapid adaptation to the surrounding stress environment. In this study, we explored the roles of hsp70 and hsp90 genes in response to heat stress, using the rapid amplification of cDNA ends technique and cloned full-length cDNAs of Pphsp70, Pphsp83, and Pphsp90. The mRNA expression levels of the three genes under different temperature stresses (25, 28, 31, 34, 37, 40, and 43 °C) and with different duration stresses (4, 8, 12, 16, and 20 h) were analyzed by quantitative real-time polymerase chain reaction. The full-length cDNA of Pphsp70, Pphsp83, and Pphsp90 was 2331 base pair (bp), 2466 bp, and 2663 bp, respectively. Phylogenetic analysis of amino acid sequences of Pphsp70, Pphsp83, and Pphsp90 showed that the sequences had high homology with that of other spiders. The mRNA expression of all three genes was extremely significantly up-regulated at 43 °C. Moreover at 43 °C, the expression of all three genes in both female and male spiders at the duration of 4 h was the highest compared to that of other stress duration groups. Therefore, it can be inferred that the three genes of P. pseudoannulata play a crucial protective role in resistance in a high-temperature environment.
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- 2021
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4. Learning behavior of Neoseiulus californicus from astigmatid to spider mites
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JIA-YUN ZHU, FENG XIAO, JIAN-FENG LIU, and RONG XIAO
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General Medicine - Abstract
Oulenziella bakeri is often used as an alternative prey for the mass rearing of Neoseiulus californicus in China. Long-term alternative prey feeding experience may cause a decline in the predatory capacity of phytoseiid mites toward their target prey. Learning behavior of predatory mites can help them adapt to the changes from preying on thrips to preying on spider mites (Rahmani et al., 2010), but there are few studies on the learning behavior of predatory mites from astigmatid mites to spider mites. Here, we compared the attack latency, prey preference, and functional response of N. californicus toward Tetranychus urticae among the “natural prey strains” (feeding only on T. urticae), “alternative prey strains” (feeding only on O. bakeri), and “learning behavior treatment” (alternative prey strains experienced in attacking but not feeding on T. urticae). The results showed that the attack latency of “alternative prey strain” of N. californicus on T. urticae was significantly longer than that of “natural prey strain” and “learning behavior treatment”. The “alternative prey strain” showed no obvious predatory preference between the protonymphs of T. urticae and O. baker. There were no significant differences in the capture rate and handling time among the three treatments. Our results indicated that the long-term rearing on alternative prey mainly prolonged the attack latency of N. californicus to the target prey and changed its prey preference, while learning behavior could help alternative prey strain of N. californicus to shorten the attack latency and restore its prey preference toward target prey (Zhu et al., 2022).
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- 2022
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5. PEDOT:PSS-CrO3 composite hole-transporting layer for high-performance p-i-n structure perovskite solar cells
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Mo-Qiong Lin, Jia-Yun Zhu, Meng Li, Jia-Hao Li, Zhao-Kui Wang, and Kai Niu
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Materials science ,Aqueous solution ,business.industry ,Energy conversion efficiency ,Composite number ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,Biomaterials ,Crystal ,PEDOT:PSS ,Materials Chemistry ,Optoelectronics ,Electrical and Electronic Engineering ,0210 nano-technology ,business ,Absorption (electromagnetic radiation) ,Layer (electronics) ,Perovskite (structure) - Abstract
A solution-processed hole-transporting layer for planar perovskite solar cells (PSCs) is developed by simply incorporating the CrO3 aqueous solution into the ploy(3,4-ethylene-dioxythiophene):ploystyrenesulfonate (PEDOT:PSS) aqueous dispersion. Besides the merits of high conductivity and interface modification, PEDOT:PSS-CrO3 composite films can act as a good underlayer for the growth of the crystal perovskite films. The CH3NH3PbI3−xClx film deposited on the PEDOT:PSS-CrO3 underlayer demonstrates high quality with large-scale domains and good film uniformity, which results in obvious improvement of the absorption in almost whole visible-light range. The resulting PSC device shows a power conversion efficiency (PCE) as high as 16.90%.
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- 2018
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6. CAMTA1 is a novel tumour suppressor regulated by miR-9/9*in glioblastoma stem cells
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Ghazaleh Tabatabai, Lasse Weinmann, Martina Anton, Daniel Schraivogel, Michael Weller, Alexander Eichner, Jia Yun Zhu, Christoph P. Beier, Michael Sixt, Dagmar Beier, and Gunter Meister
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Regulation of gene expression ,General Immunology and Microbiology ,General Neuroscience ,Cellular differentiation ,Biology ,Molecular biology ,General Biochemistry, Genetics and Molecular Biology ,Transcriptome ,Cancer stem cell ,Neurosphere ,microRNA ,Cancer research ,Gene silencing ,Stem cell ,Molecular Biology - Abstract
Cancer stem cells or cancer initiating cells are believed to contribute to cancer recurrence after therapy. MicroRNAs (miRNAs) are short RNA molecules with fundamental roles in gene regulation. The role of miRNAs in cancer stem cells is only poorly understood. Here, we report miRNA expression profiles of glioblastoma stem cell-containing CD133+ cell populations. We find that miR-9, miR-9* (referred to as miR-9/9*), miR-17 and miR-106b are highly abundant in CD133+ cells. Furthermore, inhibition of miR-9/9* or miR-17 leads to reduced neurosphere formation and stimulates cell differentiation. Calmodulin-binding transcription activator 1 (CAMTA1) is a putative transcription factor, which induces the expression of the anti-proliferative cardiac hormone natriuretic peptide A (NPPA). We identify CAMTA1 as an miR-9/9* and miR-17 target. CAMTA1 expression leads to reduced neurosphere formation and tumour growth in nude mice, suggesting that CAMTA1 can function as tumour suppressor. Consistently, CAMTA1 and NPPA expression correlate with patient survival. Our findings could provide a basis for novel strategies of glioblastoma therapy.
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- 2011
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7. Identification of Novel Epstein-Barr Virus MicroRNA Genes from Nasopharyngeal Carcinomas
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Thorsten Pfuhl, Jia Yun Zhu, John M. Nicholls, Natalie Motsch, Gunter Meister, Stephanie Barth, and Friedrich A. Grässer
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Herpesvirus 4, Human ,Cellular differentiation ,Immunology ,Nasopharyngeal neoplasm ,Biology ,medicine.disease_cause ,Microbiology ,Transformation and Oncogenesis ,RNA, Viral - biosynthesis - genetics - isolation & purification ,RNA interference ,Virology ,microRNA ,medicine ,Humans ,Gene silencing ,Cloning, Molecular ,MicroRNAs - biosynthesis - genetics - isolation & purification ,Gene ,Genetics ,Herpesvirus 4, Human - genetics ,Nasopharyngeal Neoplasms - virology ,Carcinoma ,Nasopharyngeal Neoplasms ,Sequence Analysis, DNA ,medicine.disease ,Epstein–Barr virus ,MicroRNAs ,Nasopharyngeal carcinoma ,Insect Science ,Carcinoma - virology ,RNA, Viral - Abstract
MicroRNAs (miRNAs) represent a conserved class of small noncoding RNAs that are found in all higher eukaryotes as well as some DNA viruses. miRNAs are 20 to 25 nucleotides in length and have important regulatory functions in biological processes such as embryonic development, cell differentiation, hormone secretion, and metabolism. Furthermore, miRNAs have been implicated in the pathology of various diseases, including cancer. miRNA expression profiles not only classify different types of cancer but also may even help to characterize distinct tumor stages, therefore constituting a valuable tool for prognosis. Here we report the miRNA profile of Epstein-Barr virus (EBV)-positive nasopharyngeal carcinoma (NPC) tissue samples characterized by cloning and sequencing. We found that all EBV miRNAs from the BART region are expressed in NPC tissues, whereas EBV miRNAs from the BHRF1 region are not found. Moreover, we identified two novel EBV miRNA genes originating from the BART region that have not been found in other tissues or cell lines before. We also identified three new human miRNAs which might be specific for nasopharyngeal tissues. We further show that a number of different cellular miRNAs, including miR-15a and miR-16, are upor downregulated in NPC tissues compared to control tissues. We found that the tumor suppressor BRCA-1 is a target of miR-15a as well as miR-16, suggesting a miRNA role in NPC pathogenesis. Copyright © 2009, American Society for Microbiology., link_to_OA_fulltext
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- 2009
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8. Identification of Human microRNA Targets From Isolated Argonaute Protein Complexes
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Jia Yun Zhu, Gunter Meister, Elisabeth Kremmer, Michaela Beitzinger, and Lasse Peters
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Genetics ,AU-rich element ,Regulation of gene expression ,Untranslated region ,Protein family ,Eukaryotic Initiation Factor-2 ,Trans-acting siRNA ,RNAi ,RNA interference ,microRNAs ,Argonaute ,gene silencing ,non-coding RNAs ,translation ,gene regulation ,Cell Biology ,Biology ,Cell Line ,Rats ,MicroRNAs ,Argonaute Proteins ,Animals ,Humans ,Gene silencing ,RNA, Messenger ,Eukaryotic Initiation Factors ,Molecular Biology - Abstract
MicroRNAs (miRNAs) constitute a class of small non-coding RNAs that regulate gene expression on the level of translation and/or mRNA stability. Mammalian miRNAs associate with members of the Argonaute (Ago) protein family and bind to partially complementary sequences in the 3' untranslated region (UTR) of specific target mRNAs. Computer algorithms based on factors such as free binding energy or sequence conservation have been used to predict miRNA target mRNAs. Based on such predictions, up to one third of all mammalian mRNAs seem to be under miRNA regulation. However, due to the low degree of complementarity between the miRNA and its target, such computer programs are often imprecise and therefore not very reliable. Here we report the first biochemical identification approach of miRNA targets from human cells. Using highly specific monoclonal antibodies against members of the Ago protein family, weco-immunoprecipitate Ago-bound mRNAs and identify them by cloning. Interestingly, most of the identified targets are also predicted by different computer programs. Moreover, we randomly analyzed six different target candidates and were able to experimentally validate five as miRNA targets. Our data clearly indicate that miRNA targets can be experimentally identified from Ago complexes and therefore provide a new tool to directly analyze miRNA function.
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- 2007
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9. Wogonin sensitizes resistant malignant cells to TNFα- and TRAIL-induced apoptosis
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Stefanie C. Fas, Marco Giaisi, Peter H. Krammer, Jia Yun Zhu, Sven Baumann, Monika K. Treiber, Min Li-Weber, and Ulrich Mahlknecht
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T-Lymphocytes ,Immunology ,Drug Evaluation, Preclinical ,Apoptosis ,Pharmacology ,Cycloheximide ,Biochemistry ,Proinflammatory cytokine ,TNF-Related Apoptosis-Inducing Ligand ,chemistry.chemical_compound ,Wogonin ,Superoxides ,In vivo ,Cell Line, Tumor ,medicine ,Humans ,Protein Synthesis Inhibitors ,Leukemia ,Tumor Necrosis Factor-alpha ,business.industry ,NF-kappa B ,Hydrogen Peroxide ,Cell Biology ,Hematology ,medicine.disease ,chemistry ,Chemotherapy, Adjuvant ,Cell culture ,Flavanones ,Dactinomycin ,Tumor necrosis factor alpha ,business ,Drugs, Chinese Herbal - Abstract
TNFα has previously been used in anticancer therapy. However, the therapeutic application of TNFα was largely limited due to its general toxicity and the fact that it activates the NF-κB–family transcription factors, which are proinflammatory and antiapoptotic. To overcome this problem in vitro, specific NF-κB inhibitors or transcription or protein synthesis inhibitors such as actinomycin D and cycloheximide are usually used in combination to increase TNFα killing of tumor cells. However, these agents also cause harmful side effects in vivo. We show here that wogonin, derived from the popular Chinese herb Huang-Qin, attenuates NF-κB activity by shifting TNFα-induced free radical ·O2– to a more reduced nonradical product, H2O2, and thereby sensitizes TNFα-resistant leukemia cells to TNFα-induced apoptosis. Importantly, wogonin does not affect the viability of normal peripheral blood T cells. Wogonin also sensitizes TRAIL-induced apoptosis. Our data suggest a potential use of wogonin as a TNFα or TRAIL adjuvant for cancer treatment. Our data also demonstrate how a herbal compound enhances killing of tumor cells with reduced side effects compared with other treatments.
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- 2006
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10. Integrated metabolomic and transcriptomic analysis reveal the effect of mechanical stress on sugar metabolism in tea leaves (Camellia sinensis) post-harvest
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Zhilong Hao, Yanping Tan, Jiao Feng, Hongzheng Lin, Zhilin Sun, Jia Yun Zhuang, Qianlian Chen, Xinyi Jin, and Yun Sun
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Metabolome ,Transcriptome ,Mechanical stress ,Sugar metabolism ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Sugar metabolites not only act as the key compounds in tea plant response to stress but are also critical for tea quality formation during the post-harvest processing of tea leaves. However, the mechanisms by which sugar metabolites in post-harvest tea leaves respond to mechanical stress are unclear. In this study, we aimed to investigate the effects of mechanical stress on saccharide metabolites and related post-harvest tea genes. Withered (C15) and mechanically-stressed (V15) for 15 min Oolong tea leaves were used for metabolome and transcriptome sequencing analyses. We identified a total of 19 sugar metabolites, most of which increased in C15 and V15. A total of 69 genes related to sugar metabolism were identified using transcriptome analysis, most of which were down-regulated in C15 and V15. To further understand the relationship between the down-regulated genes and sugar metabolites, we analyzed the sucrose and starch, galactose, and glycolysis metabolic pathways, and found that several key genes of invertase (INV), α-amylase (AMY), β-amylase (BMY), aldose 1-epimerase (AEP), and α-galactosidase (AGAL) were down-regulated. This inhibited the hydrolysis of sugars and might have contributed to the enrichment of galactose and D-mannose in V15. Additionally, galactinol synthase (Gols), raffinose synthase (RS), hexokinase (HXK), 6-phosphofructokinase 1 (PFK-1), and pyruvate kinase (PK) genes were significantly upregulated in V15, promoting the accumulation of D-fructose-6-phosphate (D-Fru-6P), D-glucose-6-phosphate (D-glu-6P), and D-glucose. Transcriptome and metabolome association analysis showed that the glycolysis pathway was enhanced and the hydrolysis rate of sugars related to hemicellulose synthesis slowed in response to mechanical stress. In this study, we explored the role of sugar in the response of post-harvest tea leaves to mechanical stress by analyzing differences in the expression of sugar metabolites and related genes. Our results improve the understanding of post-harvest tea’s resistance to mechanical stress and the associated mechanism of sugar metabolism. The resulting treatment may be used to control the quality of Oolong tea.
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- 2023
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11. microRNA profiling in Epstein-Barr virus-associated B-cell lymphoma
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Jochen Imig, Jia Yun Zhu, Christoph Renner, Natalie Motsch, Friedrich A. Grässer, Alberto Faggioni, Tanja Reineke, Michal J. Okoniewski, Gunter Meister, Marianne Tinguely, Stephanie Barth, Pankaj Trivedi, Institute of Virology, Universität des Saarlandes [Saarbrücken], Center for Integrated Protein Sciences Munich (CIPSM), Max Planck Institute of Biochemistry (MPIB), Max-Planck-Gesellschaft-Max-Planck-Gesellschaft, Functional Genomics Center Zurich, Institute of Surgical Pathology, University hospital of Zurich [Zurich], Department of Experimental Medicine [Roma], Institut Pasteur, Fondation Cenci Bolognetti - Istituto Pasteur Italia, Fondazione Cenci Bolognetti, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Università degli Studi di Roma 'La Sapienza' = Sapienza University [Rome], Regensburg University, Biochemistry I, Division of Oncology, Department of Internal Medicine-Oncology, Deutsche Krebshilfe (grant 107166 to G.M. and F.G.), German Bundesministerium fur Bildung und Forschung (grant NGFN to S.B. and #01GS0801/4 to F.G.), Max-Planck-Society (to Meister lab, partial), German Bundesministerium fur Bildung und Forschung (grant NGFN-Plus #01GS0801/5 to G.M.), Bavarian Ministry for Education and Science (BayGene to G.M.), MIUR, AIRC, Progetto strategico (ISS9ACF/1) and FISM (2007/R/17) (to A.F. and P.T.). Funding for open access charge: Grant 107166 from the Deutsche Krebshilfe (to G.M. and F.G.) Grant NGFN-Plus #01GS0801/4 from the German Ministry of Education (to F.G.)., and University of Zurich
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Epstein-Barr Virus Infections ,Herpesvirus 4, Human ,MESH: beta Catenin ,medicine.disease_cause ,0302 clinical medicine ,hemic and lymphatic diseases ,MESH: Reverse Transcriptase Polymerase Chain Reaction ,Nuclear protein ,B-cell lymphoma ,beta Catenin ,0303 health sciences ,MESH: Epstein-Barr Virus Infections ,Reverse Transcriptase Polymerase Chain Reaction ,Nuclear Proteins ,MESH: Gene Expression Regulation, Neoplastic ,MESH: RNA, Small Untranslated ,3. Good health ,DNA-Binding Proteins ,Gene Expression Regulation, Neoplastic ,MESH: Wnt Proteins ,030220 oncology & carcinogenesis ,Lymphoma, Large B-Cell, Diffuse ,Ubiquitin-Protein Ligases ,610 Medicine & health ,10071 Functional Genomics Center Zurich ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,MESH: Molecular Sequence Annotation ,Biology ,Cell Line ,MESH: Proto-Oncogene Proteins c-myb ,Proto-Oncogene Proteins c-myb ,03 medical and health sciences ,MESH: Gene Expression Profiling ,1311 Genetics ,Downregulation and upregulation ,10049 Institute of Pathology and Molecular Pathology ,Proto-Oncogene Proteins ,microRNA ,MESH: Gene Library ,Genetics ,medicine ,Humans ,Epstein–Barr virus infection ,Gene Library ,030304 developmental biology ,Binding Sites ,MESH: Humans ,Gene Expression Profiling ,Molecular Sequence Annotation ,MESH: Herpesvirus 4, Human ,medicine.disease ,Epstein–Barr virus ,Molecular biology ,MESH: Ubiquitin-Protein Ligases ,MESH: Cell Line ,Wnt Proteins ,MESH: Proto-Oncogene Proteins ,MicroRNAs ,MESH: Binding Sites ,10032 Clinic for Oncology and Hematology ,Cancer research ,570 Life sciences ,biology ,RNA, Small Untranslated ,RNA ,MESH: Lymphoma, Large B-Cell, Diffuse ,Carcinogenesis ,Diffuse large B-cell lymphoma ,MESH: MicroRNAs ,MESH: Nuclear Proteins ,MESH: DNA-Binding Proteins - Abstract
The Epstein–Barr virus (EBV) is an oncogenic human Herpes virus found in ∼15% of diffuse large B-cell lymphoma (DLBCL). EBV encodes miRNAs and induces changes in the cellular miRNA profile of infected cells. MiRNAs are small, non-coding RNAs of ∼19–26 nt which suppress protein synthesis by inducing translational arrest or mRNA degradation. Here, we report a comprehensive miRNA-profiling study and show that hsa-miR-424, -223, -199a-3p, -199a-5p, -27b, -378, -26b, -23a, -23b were upregulated and hsa-miR-155, -20b, -221, -151-3p, -222, -29b/c, -106a were downregulated more than 2-fold due to EBV-infection of DLBCL. All known EBV miRNAs with the exception of the BHRF1 cluster as well as EBV-miR-BART15 and -20 were present. A computational analysis indicated potential targets such as c-MYB, LATS2, c-SKI and SIAH1. We show that c-MYB is targeted by miR-155 and miR-424, that the tumor suppressor SIAH1 is targeted by miR-424, and that c-SKI is potentially regulated by miR-155. Downregulation of SIAH1 protein in DLBCL was demonstrated by immunohistochemistry. The inhibition of SIAH1 is in line with the notion that EBV impedes various pro-apoptotic pathways during tumorigenesis. The down-modulation of the oncogenic c-MYB protein, although counter-intuitive, might be explained by its tight regulation in developmental processes. ISSN:1362-4962 ISSN:0301-5610
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- 2011
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12. Identification and Analysis of Expression of Novel MicroRNAs of Murine Gammaherpesvirus 68▿ †
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Kai P. Höfig, Heiko Adler, Jia Yun Zhu, Anne Frohn, Martin Strehle, Elisabeth Kremmer, and Gunter Meister
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Rhadinovirus ,viruses ,Immunology ,Genome, Viral ,Microbiology ,Virus ,Deep sequencing ,Cell Line ,Mice ,Virology ,microRNA ,Animals ,Gene ,DNA Primers ,biology ,Base Sequence ,Sequence Analysis, RNA ,Gene Expression Profiling ,RNA ,virus diseases ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Cell biology ,Genome Replication and Regulation of Viral Gene Expression ,Gene expression profiling ,MicroRNAs ,Cell culture ,Insect Science ,Host-Pathogen Interactions ,NIH 3T3 Cells ,Nucleic Acid Conformation ,RNA, Viral ,DNA Primers/genetics ,Genome ,Viral ,Host-Pathogen Interactions/genetics ,MicroRNAs/chemistry ,MicroRNAs/genetics ,Viral/chemistry ,Vi - Abstract
Murine gammaherpesvirus 68 (MHV-68) is closely related to Epstein-Barr virus (EBV) and Kaposi's sarcoma-associated herpesvirus (KSHV) and provides a small-animal model with which to study the pathogenesis of gammaherpesvirus (γHV) infections. To completely explore the potential of the MHV-68 system for the investigation of γHV microRNAs (miRNAs), it would be desirable to know the number and expression patterns of all miRNAs encoded by MHV-68. By deep sequencing of small RNAs, we systematically investigated the expression profiles of MHV-68 miRNAs in both lytically and persistently infected cells. In addition to the nine known MHV-68 miRNAs, we identified six novel MHV-68 miRNA genes and analyzed the expression levels of all MHV-68 miRNAs. Furthermore, we also characterized the cellular miRNA expression signatures in MHV-68-infected versus noninfected NIH 3T3 fibroblasts and in 12- O -tetradecanoyl-phorbol-13-acetate (TPA)-treated versus nontreated S11 cells. We found that mmu-mir-15b and mmu-mir-16 are highly upregulated upon MHV-68 infection of NIH 3T3 cells, indicating a potential role for cellular miRNAs during MHV-68 infection. Our data will aid in the full exploration of the functions of γHV miRNAs.
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- 2010
13. The small RNA expression profile of the developing murine urinary and reproductive systems
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Markus Moser, Jia Yun Zhu, Ana Laura Gutierrez Aguilar, Robert Piskol, Dagmar Kruspe, Michaela Beitzinger, Attila Aszódi, Christoph Englert, and Gunter Meister
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Small RNA ,Trans-acting siRNA ,Biophysics ,Urogenital System ,Computational biology ,Biology ,Kidney ,Biochemistry ,Polymerase Chain Reaction ,Mice ,Structural Biology ,microRNA ,Gene expression ,Testis ,Genetics ,Gene silencing ,Animals ,Cluster Analysis ,Humans ,Molecular Biology ,Regulation of gene expression ,Base Sequence ,Gene Expression Profiling ,Ovary ,Gene Expression Regulation, Developmental ,Reproducibility of Results ,Cell Biology ,Argonaute ,RNA silencing ,MicroRNAs ,Organ Specificity - Abstract
microRNAs (miRNAs) are small non-coding RNAs with fundamental roles in the regulation of gene expression. miRNAs assemble with Argonaute (Ago) proteins to miRNA-protein complexes (miRNPs), which interact with distinct binding sites on mRNAs and regulate gene expression. Specific miRNAs are key regulators of tissue and organ development and it has been shown in mammals that miRNAs are also involved in the pathogenesis of many diseases including cancer. Here, we have characterized the miRNA expression profile of the developing murine genitourinary system. Using a computational approach, we have identified several miRNAs that are specific for the analyzed tissues or the developmental stage. Our comprehensive miRNA expression atlas of the developing genitourinary system forms an invaluable basis for further functional in vivo studies.
- Published
- 2010
14. Identification of Novel Epstein-Barr Virus MicroRNA Genes from Nasopharyngeal Carcinomas.
- Author
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Jia Yun Zhu, Pfuhl, Thorsten, Motsch, Natalie, Barth, Stephanie, Nicholls, John, Grässer, Friedrich, and Meister, Gunter
- Subjects
- *
EPSTEIN-Barr virus , *MESSENGER RNA , *NUCLEOTIDES , *METABOLISM , *GENES , *CANCER - Abstract
MicroRNAs (miRNAs) represent a conserved class of small noncoding RNAs that are found in all higher eukaryotes as well as some DNA viruses. miRNAs are 20 to 25 nucleotides in length and have important regulatory functions in biological processes such as embryonic development, cell differentiation, hormone secretion, and metabolism. Furthermore, miRNAs have been implicated in the pathology of various diseases, including cancer. miRNA expression profiles not only classify different types of cancer but also may even help to characterize distinct tumor stages, therefore constituting a valuable tool for prognosis. Here we report the miRNA profile of Epstein-Barr virus (EBV)-positive nasopharyngeal carcinoma (NPC) tissue samples characterized by cloning and sequencing. We found that all EBV miRNAs from the BART region are expressed in NPC tissues, whereas EBV miRNAs from the BHRF1 region are not found. Moreover, we identified two novel EBV miRNA genes originating from the BART region that have not been found in other tissues or cell lines before. We also identified three new human miRNAs which might be specific for nasopharyngeal tissues. We further show that a number of different cellular miRNAs, including miR-15a and miR-16, are up- or downregulated in NPC tissues compared to control tissues. We found that the tumor suppressor BRCA-1 is a target of miR-15a as well as miR-16, suggesting a miRNA role in NPC pathogenesis. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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