18 results on '"Jiahang Song"'
Search Results
2. Irradiation induces DJ-1 secretion from esophageal squamous cell carcinoma cells to accelerate metastasis of bystander cells via a TGF-β1 positive feedback loop
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Junjie Gu, Yuanyuan Sun, Jiahang Song, Ruiling Zhao, Xiaoke Di, Yumeng Zhang, Xiaolin Ge, Shu Zhang, Yun Gu, and Xinchen Sun
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DJ-1 ,TGF-β1 ,HSC70 ,Smad3 ,TSP1 ,Esophageal squamous cell carcinoma ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Radiation-induced bystander effect (RIBE) can promote tumor metastasis contributing to the failure of radiotherapy for esophageal squamous cell carcinoma (ESCC). Aberrant expression of DJ-1 has been identified in ESCC; however, the relationship between DJ-1 and RIBE in ESCC remains unknown. Methods We detected DJ-1 in the serum and cell supernatants by enzyme-linked immunosorbent assay (ELISA) and evaluated tumor metastasis by phenotypic experiments in vivo and in vitro. RNA-seq, mass spectrometry, western blot (WB), immunoprecipitation (IP), and dual-luciferase reporter assays were performed to explore the underlying mechanisms. Results DJ-1 was highly expressed in the serum of patients with ESCC receiving radiotherapy and was significantly overexpressed in the medium of ESCC cells receiving irradiation. DJ-1 promoted tumor metastasis via the TGF-β1 pathway. Mechanistic studies revealed that DJ-1 bound to HSC70 to promote Smad3 phosphorylation and nuclear aggregation in a protein-interaction manner, which activated the transcription of Thrombospondin-1 (TSP1). Subsequently, the activation of TGF-β1 by TSP1 re-promoted Smad3 phosphorylation and nuclear aggregation, constituting a positive feedback loop to strengthen the metastasis of ESCC cells, which was effectively blocked by LY2109761 and LSKL. Moreover, higher levels of serum DJ-1 in patients with ESCC were related to a poorer prognosis of radiotherapy. Conclusions Irradiation can induce ESCC cells secreting DJ-1. Secreted DJ-1 enters bystander cells to initiate activation of the TGF-β1 pathway via the DJ-1/HSC70/Smad3 signaling axis. The TSP1/TGF-β1/Smad3 positive feedback pathway constitutes the core pathway that promotes ESCC metastasis. DJ-1 is a useful biomarker for predicting the efficacy of radiotherapy and a potential therapeutic target for reversing RIBE in ESCC. Graphical Abstract Schematic diagram showing the underlying mechanism that irradiation-induced secretion of DJ-1 accelerates the metastasis of bystander ESCC cells.
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- 2022
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3. Influencing factors of capillary water migration characteristics of the sandstones in Baoding Mountain, Dazu Stone Carvings
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Jiahang Song, Shaojun Yan, Wei Xiang, Jianhui Liu, Gang Zhao, and Siwei Jiang
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dazu stone carvings ,sandstone ,capillary water ,ore ,salt damage ,migration ,Geology ,QE1-996.5 ,Engineering geology. Rock mechanics. Soil mechanics. Underground construction ,TA703-712 - Abstract
The Dafo Bay stone carvings in Baoding Mountain, Dazu District, Chongqing City, are suffering from serious capillary water damage, salt damage, biological and other derivative diseases caused by capillary water, which have brought a long-term negative effect on the protection of the world cultural heritage. Based on the field investigation of the Dafo Bay, the strata of the statuary cliff are divided into three sets: the upper sandstone of the reclining Buddha, the sandstone of the reclining Buddha and the lower sandstone of the reclining Buddha. Through a series of tests and experimental studies, the characteristics of sandstone in the Baoding Mountain area and the influence of temperature and humidity on capillary water are analyzed.The testing items include thin section identification, X-ray diffraction, chemical composition test, scanning electron microscopy, mercury injection test, Karsten tube penetration test, etc.The research results indicated that: compared with the upper and lower layers of the reclining Buddha sandstone, the Reclining Buddha body sandstone has the lowest maturity and the largest porosity and pore distribution range, which provides relatively good conditions for the migration of capillary water. The capillary water absorbability and capillary water elevation of the reclining Buddha body sandstone are the best, and the rise of capillary wateris closely related to the ambient temperature, relative humidity, and air circulation. In the tight sandstone of the Dazu Stone Carvings, a large number of interconnected micropores cannot play a role in the migration of capillary water. The effective pore diameter for capillary water migration in the reclining Buddha sandstone should be above 1 133.0 nm, and may reach 760.2 nm in extreme cases.The research results provide reliable data for an accurate understanding of the formation and evolution of capillary water in Dazu Stone Carvings, explain the formation mechanism of salt damage in Dazu Stone Carvings in winter, and provide a theoretical basis for managing capillary water in Dazu Stone Carvings.
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- 2022
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4. Craftsmanship and materials: painted Bodhisattva sculptures in the Fengguo Temple dated to the year 1020 in Yi County, Northeast China
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Jiahang Song, Wei Xiang, Shaojun Yan, Weiqiang Zhou, and Linyan Ma
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Fengguo temple ,Painted sculptures ,Liao Dynasty ,Craftsmanship ,Materials ,Fine Arts ,Analytical chemistry ,QD71-142 - Abstract
Abstract As a royal temple, the Fengguo Temple has profound historical, artistic, scientific and social values. With a thousand-year history, it is one of the three existing temples of the Liao Dynasty in China. Now there remains the Main Hall with delicate wall paintings and vivid painted sculptures. The research subject of this paper is the painted Bodhisattva sculptures in the Main Hall. The study target is to reveal the craftsmanship and materials of the painted Bodhisattva sculptures. X-ray detection and the ground-penetrating radar were employed to explore the internal structure of the painted sculptures reasonably. Through microscope analysis, X-ray fluorescence spectrometer, X-ray diffractometer, scanning electron microscopy and infrared spectroscopic analysis, the chemical constituents and hierarchical structure of the pigment layer were detected and analyzed. The grain composition and chemical composition of the base layer were presented as well. The research results offer detailed documents for subsequent restoration and pave the way for preventive conservation. Finally, this paper summarized the craftsmanship and materials of painted sculpture works in different periods, so as to explore the development history of the painted sculptures culture.
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- 2021
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5. Inflammation-Related LncRNAs Signature for Prognosis and Immune Response Evaluation in Uterine Corpus Endometrial Carcinoma
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Hongmei Gu, Jiahang Song, Yizhang Chen, Yichun Wang, Xiaofang Tan, and Hongyu Zhao
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UCEC ,inflammation ,tumor microenvironment ,prognostic signature ,immunotherapy ,TCGA ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundsUterine corpus endometrial carcinoma (UCEC) is one of the greatest threats on the female reproductive system. The aim of this study is to explore the inflammation-related LncRNA (IRLs) signature predicting the clinical outcomes and response of UCEC patients to immunotherapy and chemotherapy.MethodsConsensus clustering analysis was employed to determine inflammation-related subtype. Cox regression methods were used to unearth potential prognostic IRLs and set up a risk model. The prognostic value of the prognostic model was calculated by the Kaplan-Meier method, receiver operating characteristic (ROC) curves, and univariate and multivariate analyses. Differential abundance of immune cell infiltration, expression levels of immunomodulators, the status of tumor mutation burden (TMB), the response to immune checkpoint inhibitors (ICIs), drug sensitivity, and functional enrichment in different risk groups were also explored. Finally, we used quantitative real-time PCR (qRT-PCR) to confirm the expression patterns of model IRLs in clinical specimens.ResultsAll UCEC cases were divided into two clusters (C1 = 454) and (C2 = 57) which had significant differences in prognosis and immune status. Five hub IRLs were selected to develop an IRL prognostic signature (IRLPS) which had value in forecasting the clinical outcome of UCEC patients. Biological processes related to tumor and immune response were screened. Function enrichment algorithm showed tumor signaling pathways (ERBB signaling, TGF-β signaling, and Wnt signaling) were remarkably activated in high-risk group scores. In addition, the high-risk group had a higher infiltration level of M2 macrophages and lower TMB value, suggesting patients with high risk were prone to a immunosuppressive status. Furthermore, we determined several potential molecular drugs for UCEC.ConclusionWe successfully identified a novel molecular subtype and inflammation-related prognostic model for UCEC. Our constructed risk signature can be employed to assess the survival of UCEC patients and offer a valuable reference for clinical treatment regimens.
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- 2022
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6. A Novel Ferroptosis-Related Biomarker Signature to Predict Overall Survival of Esophageal Squamous Cell Carcinoma
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Jiahang Song, Yanhu Liu, Xiang Guan, Xun Zhang, Wenda Yu, and Qingguo Li
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esophageal squamous cell carcinoma ,ferroptosis ,prognosis ,gene signature ,TCGA ,GEO ,Biology (General) ,QH301-705.5 - Abstract
Esophageal squamous cell carcinoma (ESCC) accounts for the main esophageal cancer (ESCA) type, which is also associated with the greatest malignant grade and low survival rates worldwide. Ferroptosis is recently discovered as a kind of programmed cell death, which is indicated in various reports to be involved in the regulation of tumor biological behaviors. This work focused on the comprehensive evaluation of the association between ferroptosis-related gene (FRG) expression profiles and prognosis in ESCC patients based on The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO). ALOX12, ALOX12B, ANGPTL7, DRD4, MAPK9, SLC38A1, and ZNF419 were selected to develop a novel ferroptosis-related gene signature for GEO and TCGA cohorts. The prognostic risk model exactly classified patients who had diverse survival outcomes. In addition, this study identified the ferroptosis-related signature as a factor to independently predict the risk of ESCC. Thereafter, we also constructed the prognosis nomogram by incorporating clinical factors and risk score, and the calibration plots illustrated good prognostic performance. Moreover, the association of the risk score with immune checkpoints was observed. Collectively, the proposed ferroptosis-related gene signature in our study is effective and has a potential clinical application to predict the prognosis of ESCC.
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- 2021
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7. Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
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Fangyu Chen, Jiahang Song, Ziqi Ye, Bing Xu, Hongyan Cheng, Shu Zhang, and Xinchen Sun
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lung adenocarcinoma ,cell cycle ,immune infiltration ,prognostic signature ,bioinformatics ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundLung adenocarcinoma (LUAD) is a leading malignancy and has a poor prognosis over the decades. LUAD is characterized by dysregulation of cell cycle. Immunotherapy has emerged as an ideal option for treating LUAD. Nevertheless, optimal biomarkers to predict outcomes of immunotherapy is still ill-defined and little is known about the interaction of cell cycle-related genes (CCRGs) and immunity-related genes (IRGs).MethodsWe downloaded gene expression and clinical data from TCGA and GEO database. LASSO regression and Cox regression were used to construct a differentially expressed CCRGs and IRGs signature. We used Kaplan-Meier analysis to compare survival of LUAD patients. We constructed a nomogram to predict the survival and calibration curves were used to evaluate the accuracy.ResultsA total of 61 differentially expressed CCRGs and IRGs were screened out. We constructed a new risk model based on 8 genes, including ACVR1B, BIRC5, NR2E1, INSR, TGFA, BMP7, CD28, NUDT6. Subgroup analysis revealed the risk model accurately predicted the overall survival in LUAD patients with different clinical features and was correlated with immune cells infiltration. A nomogram based on the risk model exhibited excellent performance in survival prediction of LUAD.ConclusionsThe 8 gene survival signature and nomogram in our study are effective and have potential clinical application to predict prognosis of LUAD.
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- 2021
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8. FMS-Related Tyrosine Kinase 3 Ligand Promotes Radioresistance in Esophageal Squamous Cell Carcinoma
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Zuoquan Zhu, Jiahang Song, Junjie Gu, Bing Xu, Xinchen Sun, and Shu Zhang
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fms-related tyrosine kinase 3 ligand ,esophageal squamous cell carcinoma ,apoptosis ,radiotherapy ,DNA damage ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Aim: The FMS-related tyrosine kinase 3 ligand (FL) has an important role in regulating FMS-related tyrosine kinase 3 (Flt-3) activity. Serum FL levels are markedly increased among patients with hematopoietic disease. However, its role in radiation treatment remains unclear. In this study, we investigated the effects of FL on radiotherapy for esophageal squamous cell carcinoma (ESCC).Methods: KYSE150 and KYSE450 cells were stimulated with FL (200 ng/ml). mRNA expression was analyzed using qRT-PCR. Cell viability was checked using CCK-8 assay kits. Proliferation was determined using the EdU assay. Radiosensitivity was detected through a colony-forming assay. Flow cytometry was used to evaluate cell apoptosis. The number of γH2AX foci was verified using an immunofluorescence assay. The change in relative proteins was determined by western blot analysis. The growth of transplanted tumors was demonstrated in nude mice.Results: Our results showed that FL increased the radiation resistance of ESCC cells by promoting clone formation, increasing EdU incorporation, enhancing DNA damage repair, and inhibiting apoptosis. Moreover, the Flt-3 receptor expression significantly increased in ESCC cells after radiation, which may have been an important factor in their radioresistance.Conclusion: Our results suggest that FL increases the radioresistance of esophageal cancer cells and that FL-Flt-3 could be a potential target for enhancing radiosensitivity in ESCC.
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- 2021
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9. Transcription factor NFE2L3 promotes the proliferation of esophageal squamous cell carcinoma cells and causes radiotherapy resistance by regulating IL-6.
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Tingting Chen, Bing Xu, Hui Chen, Yuanyuan Sun, Jiahang Song, Xinchen Sun, Xizhi Zhang, and Wei Hua
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- 2022
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10. A Radioresponse-Related lncRNA Biomarker Signature for Risk Classification and Prognosis Prediction in Non-Small-Cell Lung Cancer
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Junjie Gu, Yuanyuan Sun, Xinchen Sun, Shuming Zhang, Ziqi Ye, Jiahang Song, and Qiyun Tang
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Oncology ,medicine.medical_specialty ,Prognosis prediction ,Article Subject ,business.industry ,medicine.medical_treatment ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Biomarker (cell) ,Radiation therapy ,Text mining ,Radioresistance ,Internal medicine ,Medicine ,business ,Lung cancer ,Risk classification ,RC254-282 ,Survival analysis ,Research Article - Abstract
Purpose. Radiotherapy resistance is now recognized as the major obstacle to the effective therapeutic management of non-small-cell lung cancer (NSCLC). As a single biomarker has limited effect in stratifying NSCLC patients, this research aimed to identify long non-coding RNAs (lncRNAs) correlated with radiotherapy response to ameliorate forecast of NSCLC prognosis. Methods. In a cohort of NSCLC patients with radiotherapy history (n = 96) from TCGA, genetic data of lncRNA expression profiling were performed. To identify radioresponse-related lncRNA sets which dysregulated significantly between radiosensitive (RS) and radioresistant (RR) groups, differential expression analysis was carried out. Cox relative regression was implemented to set up a radioresponse-related risk model. Moreover, we adopted survival analysis to measure the predictive potentiality of the prognosis model. Results. Four radioresponse-related lncRNAs (CASC19, LINC01977, LINC02471, and MAGI2-AS3) were screened to create a prognostic signature. Then, we described a lncRNA signature-based regulatory network and explored the correlation of the immune microenvironment and the signature. Additionally, in vitro assays uncovered inhibition of LINC01977 weakened radioresistance of NSCLC cells. Conclusion. We provided a novel radioresponse-related lncRNAs signature with excellent clinical potency for an effective prognostic forecast of patients.
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- 2021
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11. A novel pyroptosis-related lncRNA signature for prognostic prediction in patients with lung adenocarcinoma
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Zhengcheng Liu, Yuanyuan Sun, Rusong Yang, Changqing Dong, Lei Xi, Hui Cao, Jiahang Song, and Ye Shi
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Male ,Oncology ,medicine.medical_specialty ,Lung Neoplasms ,Prognostic prediction ,Adenocarcinoma of Lung ,Bioengineering ,Applied Microbiology and Biotechnology ,Cell Line, Tumor ,Internal medicine ,Databases, Genetic ,medicine ,Humans ,In patient ,prognostic signature ,tcga ,Aged ,Lung ,Proportional hazards model ,business.industry ,pyroptosis ,Pyroptosis ,Computational Biology ,General Medicine ,bioinformatics ,Middle Aged ,Nomogram ,Prognosis ,medicine.disease ,lung adenocarcinoma ,medicine.anatomical_structure ,lncrna ,Prognostic model ,Adenocarcinoma ,Female ,RNA, Long Noncoding ,Transcriptome ,business ,TP248.13-248.65 ,Research Article ,Research Paper ,Biotechnology - Abstract
Lung adenocarcinoma (LUAD) has been the major cause of tumor-associated mortality in recent years and has a poor prognosis. Pyroptosis is regulated via the activation of inflammasomes and participates in tumorigenesis. However, the effects of pyroptosis-related lncRNAs (PRlncRNAs) on LUAD have not yet been completely elucidated. Therefore, we attempted to systematically explore patterns of cell pyroptosis to establish a novel signature for predicting LUAD survival. Based on TCGA database, we set up a prognostic model by incorporating PRlncRNAs with differential expression using Cox regression and LASSO regression. Kaplan–Meier analysis was conducted to compare the survival of LUAD patients. We further simplified the risk model and created a nomogram to enhance the prediction of LUAD prognosis. Altogether, 84 PRlncRNAs with differential expression were discovered. Subsequently, a new risk model was constructed based on five PRlncRNAs, GSEC, FAM83A-AS1, AL606489.1, AL034397.3 and AC010980.2. The proposed signature exhibited good performance in prognostic prediction and was related to immunocyte infiltration. The nomogram exactly forecasted the overall survival of patients and had excellent clinical utility. In the present study, the five-lncRNA prognostic risk signature and nomogram are trustworthy and effective indicators for predicting the prognosis of LUAD., Graphical abstract
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- 2021
12. LncRNA CFAR promotes cardiac fibrosis via the miR-449a-5p/LOXL3/mTOR axis
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Mingyu Zhang, Bowen Zhang, Xiaohan Wang, Jiahang Song, Ming Tong, Zheng Dong, Jiaonan Xu, Meng Liu, Yuan Jiang, Ning Wang, Ying Wang, Zhimin Du, Yanyan Liu, Rong Zhang, and Chaoqian Xu
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General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology ,General Environmental Science - Abstract
Cardiac fibrosis is one of the crucial pathological factors in the heart, and various cardiac conditions associated with excessive fibrosis can eventually lead to heart failure. However, the exact molecular mechanism of cardiac fibrosis remains unclear. In the present study, we show that a novel lncRNA that we named cardiac fibrosis-associated regulator (CFAR) is a profibrotic factor in the heart. CFAR was upregulated in cardiac fibrosis and its knockdown attenuated the expression of fibrotic marker genes and the proliferation of cardiac fibroblasts, thereby ameliorating cardiac fibrosis. Moreover, CFAR acted as a ceRNA sponge for miR-449a-5p and derepressed the expression of LOXL3, which we experimentally established as a target gene of miR-449a-5p. In contrast to CFAR, miR-449a-5p was found to be significantly downregulated in cardiac fibrosis, and artificial knockdown of miR-449a-5p exacerbated fibrogenesis, whereas overexpression of miR-449a-5p impeded fibrogenesis. Furthermore, we found that LOXL3 mimicked the fibrotic factor TGF-β1 to promote cardiac fibrosis by activating mTOR. Collectively, our study established CFAR as a new profibrotic factor acting through a novel miR-449a-5p/LOXL3/mTOR axis in the heart and therefore might be considered as a potential molecular target for the treatment of cardiac fibrosis and associated heart diseases.
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- 2022
13. Circular RNA-Related CeRNA Network and Prognostic Signature for Patients with Osteosarcoma
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Gu Man, Jiangqi Cheng, Yu Liu, Haisen Zhou, Jiahang Song, Ao Duan, Kai Shen, and Wanshun Liu
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ceRNA network ,Competing endogenous RNA ,Computational biology ,Biology ,Nomogram ,medicine.disease ,medicine.disease_cause ,nomogram ,TARGET ,Oncology ,Circular RNA ,Cancer Management and Research ,osteosarcoma ,microRNA ,medicine ,Osteosarcoma ,prognosis ,Carcinogenesis ,Gene ,Survival analysis ,Original Research - Abstract
Introduction Osteosarcoma (OSA) is characterized by its relatively high morbidity in children and adolescents. Patients usually have advanced disease at the time of diagnosis, resulting in poor outcomes. This study focused on building a circular RNA-based ceRNA network to develop a reliable model for OSA risk prediction. Methods We used the Gene Expression Omnibus (GEO) datasets to explore the expression patterns of circRNA, miRNA, and mRNA in OSA. The prognostic value of circRNA host genes was assessed with data from the Therapeutically Applicable Research to Generate Effective Treatments (TARGET) database using Kaplan–Meier survival analysis. We established a circRNA-related ceRNA network and annotated its biological functions. Next, we developed a prognostic risk signature based on mRNAs extracted from the ceRNA network. We also developed a prognostic model and constructed a nomogram to enhance the prediction of OSA prognosis. Results We identified 166 DEcircRNAs, 233 DEmiRNAs, and 1317 DEmRNAs and used them to create a circRNA-related ceRNA network. We then established a prognostic risk model consisting of four genes (MLLT11, TNFRSF11B, SLC7A7, and PARVA). Moreover, we found that inhibition of MLLT11 and SLC7A7 blocked OSA cell proliferation and migration in in vitro experiments. Conclusion Our study identifies crucial prognostic genes and provides a circRNA-related ceRNA network for OSA, which will contribute to the elucidation of the molecular mechanisms underlying the oncogenesis and development of OSA., Graphical Abstract
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- 2021
14. Pyrenoviologen-based fluorescent sensor for detection of picric acid in aqueous solution
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Longwang Kan, Fengyan Wang, Jiahang Song, Weiling Wang, Jiale Song, Wenqiang Ma, Weidong Zhang, Gang He, and Ni Yan
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Materials science ,Aqueous solution ,Quenching (fluorescence) ,Picrate ,Inorganic chemistry ,Cationic polymerization ,Picric acid ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Fluorescence ,0104 chemical sciences ,Electron transfer ,chemistry.chemical_compound ,chemistry ,0210 nano-technology ,Selectivity - Abstract
Two highly emissive pyrenoviologen derivatives were synthesized and used to fabricate fluorescent sensors for detection of picric acid (PA) with good sensitivity and selectivity. The sensitivity of the sensor was attributed to the specific electrostatic association effect of the cationic pyrenoviologens to the picrate anions, which also gave the sensor special selectivity among other compounds with similar structure. The electron transfer between them was attributed to the fluorescence response. Fluorescence lifetime measurements revealed that the quenching is static in nature. The novel and efficient pyrenoviologen derivatives-based sensors offered a strategy to fabricate real-life PA sensor.
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- 2019
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15. Crosstalk of Redox-Related Subtypes, Establishment of a Prognostic Model and Immune Responses in Endometrial Carcinoma
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Rui Geng, Jiahang Song, Zihang Zhong, Senmiao Ni, Wen Liu, Zhiqiang He, Shilin Gan, Qinghao Huang, Hao Yu, Jianling Bai, and Jinhui Liu
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Cancer Research ,Oncology ,redox ,endometrial carcinoma ,immune infiltration ,drug sensitivity - Abstract
Redox plays a central part in the pathogeneses and development of tumors. We comprehensively determined the expression patterns of redox-related genes (RRGs) in endometrial carcinoma (EC) cohorts from public databases and identified four different RRG-related clusters. The prognosis and the characteristics of TME cell infiltration of RRGcluster C patients were worse than those of other RRG clusters. When it comes to the gene cluster, there were great differences in clinicopathology traits and immunocyte infiltration. The RRG score was calculated by Cox analyses, and an RRG-based signature was developed. The risk score performed well in the EC cohort. Samples were separated into two risk subgroups with the standard of the value of the median risk score. Low-risk patients had a better prognosis and higher immunogenicity. In addition, RRG score was closely associated with immunophenoscore, microsatellite instability, tumor mutation burden, tumor stem cell index, copy number variation and chemotherapy sensitivity. The nomogram accurately predicted the prognosis of patients, and our model showed better performance than other published models. In conclusion, we built a prognostic model of RRGs which can help to evaluate clinical outcomes and guide more effective treatment.
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- 2022
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16. Integrated Analysis of Cell Cycle–Related and Immunity-Related Biomarker Signatures to Improve the Prognosis Prediction of Lung Adenocarcinoma
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Bing Xu, Hongyan Cheng, Jiahang Song, Xinchen Sun, Shu Zhang, Ziqi Ye, and Fangyu Chen
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0301 basic medicine ,Oncology ,Cancer Research ,medicine.medical_specialty ,medicine.medical_treatment ,Subgroup analysis ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,prognostic signature ,IRGs ,RC254-282 ,Original Research ,business.industry ,Proportional hazards model ,immune infiltration ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Immunotherapy ,bioinformatics ,Nomogram ,Cell cycle ,medicine.disease ,lung adenocarcinoma ,030104 developmental biology ,030220 oncology & carcinogenesis ,Adenocarcinoma ,Biomarker (medicine) ,cell cycle ,business - Abstract
BackgroundLung adenocarcinoma (LUAD) is a leading malignancy and has a poor prognosis over the decades. LUAD is characterized by dysregulation of cell cycle. Immunotherapy has emerged as an ideal option for treating LUAD. Nevertheless, optimal biomarkers to predict outcomes of immunotherapy is still ill-defined and little is known about the interaction of cell cycle-related genes (CCRGs) and immunity-related genes (IRGs).MethodsWe downloaded gene expression and clinical data from TCGA and GEO database. LASSO regression and Cox regression were used to construct a differentially expressed CCRGs and IRGs signature. We used Kaplan-Meier analysis to compare survival of LUAD patients. We constructed a nomogram to predict the survival and calibration curves were used to evaluate the accuracy.ResultsA total of 61 differentially expressed CCRGs and IRGs were screened out. We constructed a new risk model based on 8 genes, including ACVR1B, BIRC5, NR2E1, INSR, TGFA, BMP7, CD28, NUDT6. Subgroup analysis revealed the risk model accurately predicted the overall survival in LUAD patients with different clinical features and was correlated with immune cells infiltration. A nomogram based on the risk model exhibited excellent performance in survival prediction of LUAD.ConclusionsThe 8 gene survival signature and nomogram in our study are effective and have potential clinical application to predict prognosis of LUAD.
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- 2021
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17. A Novel S100 Family-Based Signature Associated with Prognosis and Immune Microenvironment in Glioma
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Dan Wang, Rihua Zhang, Yun Liu, Jingbao Kan, Jiahang Song, Zhen Wang, Yifang Hu, Yaoqi Ge, and Wensong Zhang
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Article Subject ,Receiver operating characteristic ,business.industry ,S100 Family Gene ,S100B Gene ,Cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Genome ,Text mining ,Oncology ,Glioma ,Cancer research ,medicine ,business ,Gene ,RC254-282 ,Research Article - Abstract
Background. Glioma is the most common central nervous system (CNS) cancer with a short survival period and a poor prognosis. The S100 family gene, comprising 25 members, relates to diverse biological processes of human malignancies. Nonetheless, the significance of S100 genes in predicting the prognosis of glioma remains largely unclear. We aimed to build an S100 family-based signature for glioma prognosis. Methods. We downloaded 665 and 313 glioma patients, respectively, from The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) database with RNAseq data and clinical information. This study established a prognostic signature based on the S100 family genes through multivariate COX and LASSO regression. The Kaplan–Meier curve was plotted to compare overall survival (OS) among groups, whereas Receiver Operating Characteristic (ROC) analysis was performed to evaluate model accuracy. A representative gene S100B was further verified by in vitro experiments. Results. An S100 family-based signature comprising 5 genes was constructed to predict the glioma that stratified TCGA-derived cases as a low- or high-risk group, whereas the significance of prognosis was verified based on CGGA-derived cases. Kaplan–Meier analysis revealed that the high-risk group was associated with the dismal prognosis. Furthermore, the S100 family-based signature was proved to be closely related to immune microenvironment. In vitro analysis showed S100B gene in the signature promoted glioblastoma (GBM) cell proliferation and migration. Conclusions. We constructed and verified a novel S100 family-based signature associated with tumor immune microenvironment (TIME), which may shed novel light on the glioma diagnosis and treatment.
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- 2021
18. A fungal elicitor induces Sclerotium rolfsii sacc resistance in Atractylodis maceocephalae koidz
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Wei Tian, Fei Qi, Xinyi Zhang, Jiahang Song, and Pinyan Qin
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,Sclerotium ,biology ,Inoculation ,Phytoalexin ,Plant Science ,Phenylalanine ammonia-lyase ,Plant disease resistance ,biology.organism_classification ,01 natural sciences ,Microbiology ,Elicitor ,Rhizome ,03 medical and health sciences ,030104 developmental biology ,chemistry ,Genetics ,biology.protein ,Catechol oxidase ,010606 plant biology & botany - Abstract
The enzymatic activities (POD, PPO, CAT, PAL), as protective enzymes in the leaves of Atractylodis maceocephalae koidz , were tested by treating different concentrations of polysaccharides isolated from Sclerotium rolfsii sacc (P. S. rolfsii ) at 0 mg/l, 20 mg/l, 200 mg/l and 400 mg/l against S. rolfsii , and atractylenolides as a phytoalexin in the rhizome of A. maceocephalae were evaluated in compared with control. It was evident that the plant under stress by pathogen has instigated the significant synthesis and accumulation of atractylenolides and the higher enzymes activities were described on the eight day after fungal elicitor inoculation than the control group. Furthermore, the treatments of A. maceocephalae seedlings with P. S.rolfsii increased disease index development caused by S. rolfsii . The disease index is lowest when inoculated at a concentration as low as 20 mg/ml. In general, these results indicated that P. S. rolfsii may be useful as a fungal elicitor, which can enhance resistance and triggered innate immunity in A . maceocephalae , and had the potential to suppress the disease on A. maceocephalae when P. S. rolfsii at 20 mg/l, were used to inoculate the root of A . maceocephalae.
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- 2017
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