13 results on '"Jiménez-Fernández D"'
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2. Carboxylate isosteres for caspase inhibitors: the acylsulfonamide case revisited
- Author
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Adriaenssens, Y., primary, Jiménez Fernández, D., additional, Vande Walle, L., additional, Elvas, F., additional, Joossens, J., additional, Lambeir, A., additional, Augustyns, K., additional, Lamkanfi, M., additional, and Van der Veken, P., additional
- Published
- 2017
- Full Text
- View/download PDF
3. Characterization of resistance against the olive-defoliatingVerticillium dahliaepathotype in selected clones of wild olive
- Author
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Jiménez-Fernández, D., primary, Trapero-Casas, J. L., additional, Landa, B. B., additional, Navas-Cortés, J. A., additional, Bubici, G., additional, Cirulli, M., additional, and Jiménez-Díaz, R. M., additional
- Published
- 2016
- Full Text
- View/download PDF
4. Resistance in wild olive against the defoliating Verticillium dahliae pathotype
- Author
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Jiménez-Fernández D., Trapero-Casas J.L., Gramaje D., Landa B.B., Navas-Cortés J.A., Bubici, Cirulli M., and Jiménez-Díaz R. M.
- Subjects
food and beverages - Abstract
Rootstocks highly resistant to the highly virulent Verticillium dahliae defoliating (D) pathotype would be of much interest for the management of Verticillium wilt in olive and growing of Verticillium-susceptible olive cultivars in geographic areas where D V. dahliae prevails. Recently, research done at the University of Bari, Italy, and University of Córdoba, Spain, have led to the identification of some wild olive genotypes that could be of use as resistant rootstocks, including the currently patented clones STOPVERT and OUTVERT, AC13 and AC18. To further characterize the resistance reaction shown by those genotypes in previous studies, we have carried out a series of experiments using standardized protocols and controlled conditions optimal for development of Verticillium wilt. Own-rooted plants of a range of ages were inoculated with a range of high inoculum concentrations of selected, highly virulent D isolate V138I by root dipping and/or transplanting in an artificially infested soil mixture. Plants were inoculated once or twice in a sequence, and incubated in the growth chamber for 3 to 4 months under optimal conditions for disease development. Disease reaction was assessed by the development of foliar symptoms, isolation of the pathogen from the lower, middle, and upper main stem, and molecular quantification of the fungus in the sampled tissues using a real-time quantitative PCR (qPCR) protocol with a detection limit of 18 fg of V. dahliae DNA in infected, symptomless tissues. Clones STOPVERT and OUTVERT showed a symptomless reaction to inoculation compared with 100 % dead plants in susceptible 'Picual' olive and mild disease reaction in tolerant 'Frantoio'. V. dahliae was isolated from middle stem parts of STOPVERT and OUTVERT plants to a lesser extent than from the lower stem, but isolations from 'Frantoio' plants yielded the fungus from all stem parts at similar proportions. On average, the concentration of V. dahliae DNA per 100 ng of stem DNA ranged from 5.6 to 41.1 pg in STOPVERT plants, from 13.7 to 80.9 pg in OUTVERT plants, and from 94.6 to 141.6 pg in 'Frantoio' plants. The larger of those concentrations is 120 times lower than that found in susceptible 'Picual' olive. Extending the time of incubation of infected STOPVERT and OUTVERT plants reduced the frequency of successful isolations and quantification from previously infected tissues. Clones AC13 and AC18 also showed a highly resistant reaction to root-dip inoculation with V. dahliae 138I, though slight symptoms developed in some 'AC18' plants. Average V. dahliae DNA concentration per 100 ng of stem DNA was 10,9 and 86,7 pg in 'AC13' and 'AC18' plants, respectively, compared with 42,9 pg and 16,6 ng in 'Frantoio' and 'Picual' olives. Histopathological assessment of the plants reaction is in progress. Also, experiments are being conducted to determine the influence of genetic and geographic diversity of D V. dahliae isolates on the resistant reaction of the wild olive clones. Research supported by grants P10-AGR 6082 from CICE-Junta de Andalucía, Spain and the 'Organización Interprofesional del Aceite de Oliva Español-CITOLIVA'.
- Published
- 2013
5. Characterization of resistance against the olive-defoliating Verticillium dahliae pathotype in selected clones of wild olive.
- Author
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Jiménez‐Fernández, D., Trapero‐Casas, J. L., Landa, B. B., Navas‐Cortés, J. A., Bubici, G., Cirulli, M., and Jiménez‐Díaz, R. M.
- Subjects
- *
VERTICILLIUM wilt diseases , *FUNGAL diseases of plants , *WILT diseases , *OLIVE , *VERTICILLIUM dahliae , *PLANT diseases - Abstract
Verticillium wilt of olive is best managed by resistant cultivars, but those currently available show incomplete resistance to the defoliating (D) Verticillium dahliae pathotype. Moreover, these cultivars do not satisfy consumers' demand for high yields and oil quality. Highly resistant rootstocks would be of paramount importance for production of agronomically adapted and commercially desirable olive cultivars in D V. dahliae-infested soils. In this work, resistance to D V. dahliae in wild olive clones Ac-13, Ac-18, OutVert and StopVert was assessed by quantifying the fungal DNA along the stem using a highly sensitive real-time quantitative polymerase chain reaction ( qPCR) protocol and a stem colonization index ( SCI) based on isolation of V. dahliae following artificial inoculations under conditions highly conducive for verticillium wilt. Ac-13, Ac-18, OutVert and StopVert showed a symptomless reaction to D V. dahliae. The mean amount of D V. dahliae DNA quantified in stems of the four clones ranged from 3.64 to 28.89 pg/100 ng olive DNA, which was 249 to 1537 times lower than that in susceptible Picual olive. The reduction in the quantitative stem colonization of wild olive clones by D V. dahliae was also indicated by a sharp decrease in the SCI. Overall, there was a pattern of decreasing SCI in acropetal progression along the plant axis, as well as correlation between positive reisolation and quantification of pathogen DNA. The results of this research show that wild olive clones Ac-13, Ac-18, OutVert and StopVert have a valuable potential as rootstocks for the management of verticillium wilt in olive. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
6. Strategies to Target ISG15 and USP18 Toward Therapeutic Applications.
- Author
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Jiménez Fernández D, Hess S, and Knobeloch KP
- Abstract
The interferon (IFN)-stimulated gene product 15 (ISG15) represents an ubiquitin-like protein (Ubl), which in a process termed ISGylation can be covalently linked to target substrates via a cascade of E1, E2, and E3 enzymes. Furthermore, ISG15 exerts functions in its free form both, as an intracellular and as a secreted protein. In agreement with its role as a type I IFN effector, most functions of ISG15 and ISGylation are linked to the anti-pathogenic response. However, also key roles in other cellular processes such as protein translation, cytoskeleton dynamics, exosome secretion, autophagy or genome stability and cancer were described. Ubiquitin-specific protease 18 (USP18) constitutes the major ISG15 specific protease which counteracts ISG15 conjugation. Remarkably, USP18 also functions as a critical negative regulator of the IFN response irrespective of its enzymatic activity. Concordantly, lack of USP18 function causes fatal interferonopathies in humans and mice. The negative regulatory function of USP18 in IFN signaling is regulated by various protein-protein interactions and its stability is controlled via proteasomal degradation. The broad repertoire of physiological functions and regulation of ISG15 and USP18 offers a variety of potential intervention strategies which might be of therapeutic use. Due to the high mutation rates of pathogens which are often species specific and constantly give rise to a variety of immune evasion mechanisms, immune effector systems are under constant evolutionarily pressure. Therefore, it is not surprising that considerable differences in ISG15 with respect to function and sequence exist even among closely related species. Hence, it is essential to thoroughly evaluate the translational potential of results obtained in model organisms especially for therapeutic strategies. This review covers existing and conceptual assay systems to target and identify modulators of ISG15, ISGylation, USP18 function, and protein-protein interactions within this context. Strategies comprise mouse models for translational perspectives, cell-based and biochemical assays as well as chemical probes., (Copyright © 2020 Jiménez Fernández, Hess and Knobeloch.)
- Published
- 2020
- Full Text
- View/download PDF
7. The in vivo ISGylome links ISG15 to metabolic pathways and autophagy upon Listeria monocytogenes infection.
- Author
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Zhang Y, Thery F, Wu NC, Luhmann EK, Dussurget O, Foecke M, Bredow C, Jiménez-Fernández D, Leandro K, Beling A, Knobeloch KP, Impens F, Cossart P, and Radoshevich L
- Subjects
- Acetylation, Animals, Cytokines genetics, Listeria monocytogenes pathogenicity, Listeriosis pathology, Liver metabolism, Liver microbiology, Lysine metabolism, Metabolic Networks and Pathways, Mice, Inbred C57BL, Mice, Mutant Strains, Mitochondrial Proteins metabolism, Protein Processing, Post-Translational, TOR Serine-Threonine Kinases genetics, TOR Serine-Threonine Kinases metabolism, Ubiquitination, Ubiquitins genetics, Ubiquitins metabolism, Autophagy physiology, Cytokines metabolism, Listeriosis metabolism
- Abstract
ISG15 is an interferon-stimulated, ubiquitin-like protein, with anti-viral and anti-bacterial activity. Here, we map the endogenous in vivo ISGylome in the liver following Listeria monocytogenes infection by combining murine models of reduced or enhanced ISGylation with quantitative proteomics. Our method identifies 930 ISG15 sites in 434 proteins and also detects changes in the host ubiquitylome. The ISGylated targets are enriched in proteins which alter cellular metabolic processes, including upstream modulators of the catabolic and antibacterial pathway of autophagy. Computational analysis of substrate structures reveals that a number of ISG15 modifications occur at catalytic sites or dimerization interfaces of enzymes. Finally, we demonstrate that animals and cells with enhanced ISGylation have increased basal and infection-induced autophagy through the modification of mTOR, WIPI2, AMBRA1, and RAB7. Taken together, these findings ascribe a role of ISGylation to temporally reprogram organismal metabolism following infection through direct modification of a subset of enzymes in the liver.
- Published
- 2019
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8. Does caspase-12 suppress inflammasome activation?
- Author
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Vande Walle L, Jiménez Fernández D, Demon D, Van Laethem N, Van Hauwermeiren F, Van Gorp H, Van Opdenbosch N, Kayagaki N, and Lamkanfi M
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- Animals, Humans, Caspases deficiency, Caspases metabolism, Listeria monocytogenes immunology, Sepsis immunology, Sepsis microbiology
- Published
- 2016
- Full Text
- View/download PDF
9. Symptomless Host and Nonhost Responses of Paulownia (Paulownia spp.) to Olive-Defoliating Verticillium dahliae.
- Author
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Jiménez-Fernández D, Olivares-García C, Trapero-Casas JL, Requena J, Moreno J, and Jiménez-Díaz RM
- Abstract
Symptomless host and nonhost responses of Paulownia spp. to olive-defoliating (D) Verticillium dahliae is reported for the first time. Two paulownia clones, Paulownia elongata 'PC-2' and P. elongata × P. fortunei 'PC-3', were inoculated with a V. dahliae isolate representative of the D pathotype by either root dip or stem injection with a conidial suspension, repeated transplanting to a V. dahliae-infested soil mixture, or root dip in the conidial suspension followed by transplanting to the infested soil mixture. 'Picual' olive and 'Sugar Baby' watermelon were included in all experiments as susceptible standards to show that the inoculation procedures and incubation conditions were successful. Plants were incubated under conditions optimal for Verticillium wilt that caused severe disease in 'Picual' olive and 'Sugar Baby' watermelon in the growth chamber, shade house, and field microplots for 30 to 57 weeks in three independent experiments. No foliar symptoms developed on paulownia, whose stems were found free of V. dahliae both by isolation on semiselective NP-10 medium as well as by a nested-polymerase chain reaction assay using total genomic DNA from inoculated plants that effectively detected D V. dahliae in olive stems. V. dahliae was isolated to a limited extent from roots of PC-3 paulownia plants after 30 weeks of growth in the infested soil mixture but not from those that were root-dip inoculated or from PC-2 plants regardless the method of inoculation. The symptomless host and nonhost responses of Paulownia spp. to D V. dahliae may have practical applications in the use of fertile soils in southern Spain, particularly in those that are highly infested with the highly virulent D pathotype, as well as a replacement crop for Verticillium wilt-affected olive orchards in that region.
- Published
- 2015
- Full Text
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10. Inflammatory caspases: key regulators of inflammation and cell death.
- Author
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Jiménez Fernández D and Lamkanfi M
- Subjects
- Animals, Cell Death, Cytokines metabolism, Enzyme Activation, Humans, Inflammasomes, Caspases metabolism, Inflammation enzymology, Inflammation pathology
- Abstract
The innate immune system represents the first line of defence against infectious agents, and co-ordinates cellular and molecular mechanisms that result in effective inflammatory and anti-microbial responses against pathogens. Infection and cellular stress trigger assembly of canonical and noncanonical inflammasome complexes that activate the inflammatory caspases-1 and -11, respectively. These inflammatory caspases play key roles in innate immune responses by inducing pyroptosis to halt intracellular replication of pathogens, and by engaging the extracellular release of pro-inflammatory cytokines and danger signals. In addition, the inflammatory caspases-4, -5 and -11 were recently shown to directly bind microbial components. Although the immune roles of caspase-12 are debated, it was proposed to dampen inflammatory responses by interfering with caspase-1 activation and other innate immune pathways. Here, we recapitulate the reported roles of inflammatory caspases with an emphasis on recent insights into their biological functions.
- Published
- 2015
- Full Text
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11. Quantitative and microscopic assessment of compatible and incompatible interactions between chickpea cultivars and Fusarium oxysporum f. sp. ciceris races.
- Author
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Jiménez-Fernández D, Landa BB, Kang S, Jiménez-Díaz RM, and Navas-Cortés JA
- Subjects
- Host-Pathogen Interactions physiology, Immunity, Innate physiology, Plant Roots microbiology, Cicer microbiology, Fusarium pathogenicity, Plant Diseases microbiology
- Abstract
Background: Fusarium wilt caused by Fusarium oxysporum f. sp. ciceris, a main threat to global chickpea production, is managed mainly by resistant cultivars whose efficiency is curtailed by Fusarium oxysporum f. sp. ciceris races., Methodology: We characterized compatible and incompatible interactions by assessing the spatial-temporal pattern of infection and colonization of chickpea cvs. P-2245, JG-62 and WR-315 by Fusarium oxysporum f. sp. ciceris races 0 and 5 labeled with ZsGreen fluorescent protein using confocal laser scanning microscopy., Findings: The two races colonized the host root surface in both interactions with preferential colonization of the root apex and subapical root zone. In compatible interactions, the pathogen grew intercellularly in the root cortex, reached the xylem, and progressed upwards in the stem xylem, being the rate and intensity of stem colonization directly related with the degree of compatibility among Fusarium oxysporum f. sp. ciceris races and chickpea cultivars. In incompatible interactions, race 0 invaded and colonized 'JG-62' xylem vessels of root and stem but in 'WR-315', it remained in the intercellular spaces of the root cortex failing to reach the xylem, whereas race 5 progressed up to the hypocotyl. However, all incompatible interactions were asymptomatic., Conclusions: The differential patterns of colonization of chickpea cultivars by Fusarium oxysporum f. sp. ciceris races may be related to the operation of multiple resistance mechanisms.
- Published
- 2013
- Full Text
- View/download PDF
12. Molecular and Pathogenic Characterization of Fusarium redolens, a New Causal Agent of Fusarium Yellows in Chickpea.
- Author
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Jiménez-Fernández D, Navas-Cortés JA, Montes-Borrego M, Jiménez-Díaz RM, and Landa BB
- Abstract
The association of Fusarium redolens with wilting-like symptoms in chickpea in Lebanon, Morocco, Pakistan, and Spain is reported for the first time, together with the molecular and pathogenic characterization of isolates of the pathogen from chickpea of diverse geographic origin. Maximum parsimony analysis of sequences of the translation elongation factor 1α (TEF-1α) gene grouped all F. redolens isolates from chickpea in the same main clade. Pathogenicity assays using three chickpea cultivars and isolates from different geographic origins indicated that F. redolens is mildly virulent on chickpea. Moreover, infection of chickpea by F. redolens induces a disease syndrome similar to that caused by the yellowing pathotype of F. oxysporum f. sp. ciceris, including leaf yellowing and necrosis that develop upward from the stem base, and premature senescence of the plant. In contrast, F. redolens does not cause discoloration of the vascular tissues in chickpea but does cause brown necrotic lesions in the tap root and necrosis of lateral roots. F. redolens is not easily differentiated from F. oxysporum f. sp. ciceris using morphology-based diagnosis, and the two species cause similar symptoms on chickpea; therefore, the use of molecular protocols should help to avoid misdiagnoses of Fusarium yellows in chickpea.
- Published
- 2011
- Full Text
- View/download PDF
13. In planta and soil quantification of Fusarium oxysporum f. sp. ciceris and evaluation of Fusarium wilt resistance in chickpea with a newly developed quantitative polymerase chain reaction assay.
- Author
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Jiménez-Fernández D, Montes-Borrego M, Jiménez-Díaz RM, Navas-Cortés JA, and Landa BB
- Subjects
- Cicer microbiology, Fusarium genetics, Genetic Markers, Plant Diseases genetics, Plant Diseases microbiology, Plant Roots, Plant Stems, Sensitivity and Specificity, Soil, Species Specificity, Virulence, Cicer genetics, DNA, Fungal analysis, Fusarium classification, Fusarium pathogenicity, Immunity, Innate genetics, Polymerase Chain Reaction methods
- Abstract
Fusarium wilt of chickpea caused by Fusarium oxysporum f. sp. ciceris can be managed by risk assessment and use of resistant cultivars. A reliable method for the detection and quantification of F. oxysporum f. sp. ciceris in soil and chickpea tissues would contribute much to implementation of those disease management strategies. In this study, we developed a real-time quantitative polymerase chain reaction (q-PCR) protocol that allows quantifying F. oxysporum f. sp. ciceris DNA down to 1 pg in soil, as well as in the plant root and stem. Use of the q-PCR protocol allowed quantifying as low as 45 colony forming units of F. oxysporum f. sp. ciceris per gram of dry soil from a field plot infested with several races of the pathogen. Moreover, the q-PCR protocol clearly differentiated susceptible from resistant chickpea reactions to the pathogen at 15 days after sowing in artificially infested soil, as well as the degree of virulence between two F. oxysporum f. sp. ciceris races. Also, the protocol detected early asymptomatic root infections and distinguished significant differences in the level of resistance of 12 chickpea cultivars that grew in that same field plot infested with several races of the pathogen. Use of this protocol for fast, reliable, and cost-effective quantification of F. oxysporum f. sp. ciceris in asymptomatic chickpea tissues at early stages of the infection process can be of great value for chickpea breeders and for epidemiological studies in growth chambers, greenhouses and field-scale plots.
- Published
- 2011
- Full Text
- View/download PDF
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