9 results on '"Jingpeng Zhu"'
Search Results
2. Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein
- Author
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Xiu Luo, Xinlu Wang, Yina Gao, Jingpeng Zhu, Songqing Liu, Guangxia Gao, and Pu Gao
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Summary: Zinc-finger antiviral protein (ZAP) is a host antiviral factor that specifically restricts a wide range of viruses. ZAP selectively binds to CG-dinucleotide-enriched RNA sequences and recruits multiple RNA degradation machines to degrade target viral RNA. However, the molecular mechanism and structural basis for ZAP recognition of specific RNA are not clear. Here, we report the crystal structure of the ZAP N-terminal domain bound to a CG-rich single-stranded RNA, providing the molecular basis for its specific recognition of a CG dinucleotide and additional guanine and cytosine. The four zinc fingers of ZAP adopt a unique architecture and form extensive interactions with RNA. Mutations of both protein and RNA at the RNA-ZAP interacting surface reduce the in vitro binding affinity and cellular antiviral activity. This work reveals the molecular mechanism of ZAP recognition of specific target RNA and also provides insights into the mechanism by which ZAP coordinates downstream RNA degradation processes. : ZAP is a host antiviral factor that specifically restricts a wide range of viruses. Luo et al. determine the structural and molecular basis for the specific recognition of a CG dinucleotide and additional guanine and cytosine by ZAP. Keywords: ▪▪▪
- Published
- 2020
- Full Text
- View/download PDF
3. Intrinsic Aerobic Capacity Affects Hippocampal pAkt and HSP72 Response to an Acute High Fat Diet and Heat Treatment in Rats
- Author
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Joshua L. Wheatley, Delin Ma, John A. Stanford, Lauren G. Koch, Xiaonan Wan, Fu-Chen Yang, John P. Thyfault, Paige C. Geiger, Steven L. Britton, Jingpeng Zhu, Robert S. Rogers, and Li Gan
- Subjects
Research Report ,0301 basic medicine ,medicine.medical_specialty ,intrinsic aerobic running capacity ,Striatum ,Hippocampal formation ,urologic and male genital diseases ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Heat shock protein ,medicine ,Hippocampus (mythology) ,Heat shock ,Acute high fat diet ,Protein kinase B ,Aerobic capacity ,heat treatment ,business.industry ,Akt ,General Neuroscience ,female genital diseases and pregnancy complications ,Psychiatry and Mental health ,Clinical Psychology ,030104 developmental biology ,Endocrinology ,Phosphorylation ,Geriatrics and Gerontology ,business ,human activities ,030217 neurology & neurosurgery - Abstract
Background: Aerobic capacity is associated with metabolic, cardiovascular, and neurological health. Low-capacity runner (LCR) rats display low aerobic capacity, metabolic dysfuction, and spatial memory deficits. A heat treatment (HT) can improve metabolic dysfunction in LCR peripheral organs after high fat diet (HFD). Little is known about metabolic changes in the brains of these rats following HT. Objective: Our objective was to examine the extent to which high or low aerobic capacity impacts Akt (a protein marker of metabolism) and heat shock protein 72 (HSP72, a marker of heat shock response) after HFD and HT in hippocampus. Methods: We measured phosphorylated Akt (pAkt) in the striatum and hippocampus, and HSP72 in the hippocampus, of HFD-fed and chow-fed LCR and high-capacity runner (HCR) rats with and without HT. Results: pAkt was lower in the hippocampus of chow-fed LCR than HCR rats. HFD resulted in greater pAkt in LCR but not HCR rats, but HT resulted in lower pAkt in the LCR HFD group. HSP72 was greater in both HCR and LCR rat hippocampus after HT. The HFD blunted this effect in LCR compared to HCR hippocampus. Conclusion: The abnormal phosphorylation of Akt and diminished HSP response in the hippocampus of young adult LCR rats might indicate early vulnerability to metabolic challenges in this key brain region associated with learning and memory.
- Published
- 2021
- Full Text
- View/download PDF
4. Structural insights into assembly, operation and inhibition of a type I restriction–modification system
- Author
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Han Feng, Pu Gao, Yina Gao, Xiao-Xue Yan, Duanfang Cao, Songqing Liu, Xiu Luo, Xinzheng Zhang, and Jingpeng Zhu
- Subjects
Models, Molecular ,Microbiology (medical) ,Protein Conformation ,Immunology ,Repressor ,Computational biology ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Microbiology ,Genome ,Viral Proteins ,03 medical and health sciences ,Endonuclease ,chemistry.chemical_compound ,Protein structure ,Bacterial Proteins ,Escherichia coli ,Genetics ,medicine ,Translocase ,DNA Restriction-Modification Enzymes ,030304 developmental biology ,0303 health sciences ,Mutation ,biology ,030306 microbiology ,Chemistry ,Escherichia coli Proteins ,Cryoelectron Microscopy ,Deoxyribonucleases, Type I Site-Specific ,DNA ,Cell Biology ,DNA-Binding Proteins ,Repressor Proteins ,biology.protein ,Restriction modification system - Abstract
Type I restriction–modification (R–M) systems are widespread in prokaryotic genomes and provide robust protection against foreign DNA. They are multisubunit enzymes with methyltransferase, endonuclease and translocase activities. Despite extensive studies over the past five decades, little is known about the molecular mechanisms of these sophisticated machines. Here, we report the cryo-electron microscopy structures of the representative EcoR124I R–M system in different assemblies (R2M2S1, R1M2S1 and M2S1) bound to target DNA and the phage and mobile genetic element-encoded anti-restriction proteins Ocr and ArdA. EcoR124I can precisely regulate different enzymatic activities by adopting distinct conformations. The marked conformational transitions of EcoR124I are dependent on the intrinsic flexibility at both the individual-subunit and assembled-complex levels. Moreover, Ocr and ArdA use a DNA-mimicry strategy to inhibit multiple activities, but do not block the conformational transitions of the complexes. These structural findings, complemented by mutational studies of key intermolecular contacts, provide insights into assembly, operation and inhibition mechanisms of type I R–M systems. This study provides new insights into the structure, assembly and dynamics of type I restriction–modification systems, and their inhibition by phage proteins.
- Published
- 2020
- Full Text
- View/download PDF
5. Viral tegument proteins restrict cGAS-DNA phase separation to mediate immune evasion
- Author
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Panpan Sun, Han Feng, Yina Gao, Songqing Liu, Sheng Zhou, Shu Zhu, Xiu Luo, Hongyu Deng, Jingpeng Zhu, Chong Liu, Quanjin Li, Dong Li, Qi Zhan, Yun Feng, Guangjun Xu, and Pu Gao
- Subjects
Protein family ,Viral protein ,Host–pathogen interaction ,Biology ,Alphaherpesvirinae ,medicine.disease_cause ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Immune system ,medicine ,Betaherpesvirinae ,Humans ,Molecular Biology ,Pathogen ,030304 developmental biology ,Immune Evasion ,Viral Structural Proteins ,0303 health sciences ,Innate immune system ,Cell Biology ,Viral tegument ,DNA ,Herpesviridae Infections ,Nucleotidyltransferases ,Immunity, Innate ,Cell biology ,HEK293 Cells ,chemistry ,030217 neurology & neurosurgery ,HeLa Cells - Abstract
Summary DNA-induced liquid-liquid phase separation of cyclic GMP-AMP synthase (cGAS) triggers a potent response to detect pathogen infection and promote innate immune signaling. Whether and how pathogens manipulate cGAS-DNA condensation to mediate immune evasion is unknown. We report the identification of a structurally related viral tegument protein family, represented by ORF52 and VP22 from gamma- and alpha-herpesvirinae, respectively, that employs a conserved mechanism to restrict cGAS-DNA phase separation. ORF52/VP22 proteins accumulate into, and effectively disrupt, the pre-formed cGAS-DNA condensation both in vitro and in cells. The inhibition process is dependent on DNA-induced liquid-liquid phase separation of the viral protein rather than a direct interaction with cGAS. Moreover, highly abundant ORF52 proteins carried within viral particles are able to target cGAS-DNA phase separation in early infection stage. Our results define ORF52/VP22-type tegument proteins as a family of inhibitors targeting cGAS-DNA phase separation and demonstrate a mechanism for how viruses overcome innate immunity.
- Published
- 2021
6. Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein
- Author
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Guangxia Gao, Songqing Liu, Yina Gao, Jingpeng Zhu, Xinlu Wang, Xiu Luo, and Pu Gao
- Subjects
0301 basic medicine ,Models, Molecular ,Guanine ,Antiviral protein ,chemical and pharmacologic phenomena ,ZINC FINGER ANTIVIRAL PROTEIN ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Protein Domains ,Animals ,Humans ,lcsh:QH301-705.5 ,Gene ,Zinc finger ,Base Sequence ,RNA ,RNA-Binding Proteins ,hemic and immune systems ,Cell biology ,030104 developmental biology ,HEK293 Cells ,lcsh:Biology (General) ,chemistry ,Molecular mechanism ,RNA, Viral ,Mutant Proteins ,030217 neurology & neurosurgery ,Cytosine ,Protein Binding - Abstract
Summary: Zinc-finger antiviral protein (ZAP) is a host antiviral factor that specifically restricts a wide range of viruses. ZAP selectively binds to CG-dinucleotide-enriched RNA sequences and recruits multiple RNA degradation machines to degrade target viral RNA. However, the molecular mechanism and structural basis for ZAP recognition of specific RNA are not clear. Here, we report the crystal structure of the ZAP N-terminal domain bound to a CG-rich single-stranded RNA, providing the molecular basis for its specific recognition of a CG dinucleotide and additional guanine and cytosine. The four zinc fingers of ZAP adopt a unique architecture and form extensive interactions with RNA. Mutations of both protein and RNA at the RNA-ZAP interacting surface reduce the in vitro binding affinity and cellular antiviral activity. This work reveals the molecular mechanism of ZAP recognition of specific target RNA and also provides insights into the mechanism by which ZAP coordinates downstream RNA degradation processes. : ZAP is a host antiviral factor that specifically restricts a wide range of viruses. Luo et al. determine the structural and molecular basis for the specific recognition of a CG dinucleotide and additional guanine and cytosine by ZAP. Keywords: ▪▪▪
- Published
- 2019
7. HpoR, a novel c-di-GMP effective transcription factor, links the second messenger's regulatory function to the mycobacterial antioxidant defense
- Author
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Lihua Hu, Zheng-Guo He, Meng Li, Weihui Li, Jingpeng Zhu, Jiarui Chen, and Zhiwei Xie
- Subjects
0301 basic medicine ,Cell signaling ,Operon ,030106 microbiology ,Mycobacterium smegmatis ,Regulator ,Second Messenger Systems ,Antioxidants ,03 medical and health sciences ,Gene cluster ,Genetics ,Promoter Regions, Genetic ,Transcription factor ,Cyclic GMP ,Molecular Biology ,Regulation of gene expression ,biology ,Gene Expression Regulation, Bacterial ,Hydrogen Peroxide ,biology.organism_classification ,Cell biology ,DNA-Binding Proteins ,030104 developmental biology ,Biofilms ,Second messenger system ,Signal Transduction - Abstract
Cyclic di-GMP (c-di-GMP) is a global signaling molecule that widely modulates diverse cellular processes. However, whether or not the c-di-GMP signal participates in regulation of bacterial antioxidant defense is unclear, and the involved regulators remain to be explored. In this study, we characterized HpoR as a novel c-di-GMP effective transcription factor and found a link between the c-di-GMP signal and the antioxidant regulation in Mycobacterium smegmatis. H2O2 stress induces c-di-GMP accumulation in M. smegmatis. High level of c-di-GMP triggers expression of a redox gene cluster, designated as hpoR operon, which is required for the mycobacterial H2O2 resistance. HpoR acts as an inhibitor of the hpoR operon and recognizes a 12-bp motif sequence within the upstream regulatory region of the operon. c-di-GMP specifically binds with HpoR at a ratio of 1:1. Low concentrations of c-di-GMP stimulate the DNA-binding activity of HpoR, whereas high concentrations of the signal molecule inhibit the activity. Strikingly, high level of c-di-GMP de-represses the intracellular association of HpoR with the regulatory region of the hpoR operon in M. smegmatis and enhances the mycobacterial H2O2 resistance. Therefore, we report a novel c-di-GMP effective regulator in mycobacteria, which extends the second messenger’s function to bacterial antioxidant defense.
- Published
- 2017
8. Design of a digital controller for high frequency HID lamp ballast
- Author
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Jingpeng Zhu, Fang Zhuo, and Zhaoan Wang
- Subjects
Ballast ,Microcontroller ,Engineering ,Gas-discharge lamp ,Control theory ,law ,business.industry ,Automatic frequency control ,Phasor ,Digital control ,business ,Resonant inverter ,law.invention - Abstract
This paper presents the analysis, control strategy and realization of a digital frequency controller of a two stage ballast for HID Lamps. First, the small signal phasor model of the LC S C P resonant inverter is established and verified. Based on this model, a dobule loop digital compensator is desigened to control the current and power of the lamp. Then the overall control strategy for the long term stability of the ballast is designed and realized on a PIC MCU controller. Finally, a electronic ballast for a 400W MH lamp is designed based on this scheme, and the experimental results are provided.
- Published
- 2009
- Full Text
- View/download PDF
9. Novel capacitor-isolated power converter.
- Author
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Jingpeng Zhu, Ming Xu, Julu Sun, and Chuanyun Wang
- Published
- 2010
- Full Text
- View/download PDF
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