11 results on '"Johannes Klingler"'
Search Results
2. Rationalizing Steroid Interactions with Lipid Membranes: Conformations, Partitioning, and Kinetics
- Author
-
Johannes Klingler, Sandro Keller, Kalina Atkovska, Jochen S. Hub, and Johannes Oberwinkler
- Subjects
0301 basic medicine ,Cell signaling ,Neuroactive steroid ,Chemistry ,General Chemical Engineering ,medicine.medical_treatment ,Isothermal titration calorimetry ,General Chemistry ,Steroid biosynthesis ,3. Good health ,Steroid ,03 medical and health sciences ,030104 developmental biology ,Membrane ,Biophysics ,medicine ,Lipid bilayer ,QD1-999 ,Hormone ,Research Article - Abstract
Steroids have numerous physiological functions associated with cellular signaling or modulation of the lipid membrane structure and dynamics, and as such, they have found broad pharmacological applications. Steroid–membrane interactions are relevant to multiple steps of steroid biosynthesis and action, as steroids are known to interact with neurotransmitter or membrane steroid receptors, and steroids must cross lipid membranes to exert their physiological functions. Therefore, rationalizing steroid function requires understanding of steroid–membrane interactions. We combined molecular dynamics simulations and isothermal titration calorimetry to characterize the conformations and the energetics of partitioning, in addition to the kinetics of flip–flop transitions and membrane exit, of 26 representative steroid compounds in a model lipid membrane. The steroid classes covered in this study include birth control and anabolic drugs, sex and corticosteroid hormones, neuroactive steroids, as well as steroids modulating the lipid membrane structure. We found that the conformational ensembles adopted by different steroids vary greatly, as quantified by their distributions of tilt angles and insertion depths into the membrane, ranging from well-defined steroid conformations with orientations either parallel or normal to the membrane, to wide conformational distributions. Surprisingly, despite their chemical diversity, the membrane/water partition coefficient is similar among most steroids, except for structural steroids such as cholesterol, leading to similar rates for exiting the membrane. By contrast, the rates of steroid flip–flop vary by at least 9 orders of magnitude, revealing that flip–flop is the rate-limiting step during cellular uptake of polar steroids. This study lays the ground for a quantitative understanding of steroid–membrane interactions, and it will hence be of use for studies of steroid biosynthesis and function as well as for the development and usage of steroids in a pharmacological context., Interactions of 26 steroid compounds with lipid membranes were derived using molecular dynamics simulations and isothermal titration calorimetry.
- Published
- 2018
3. Formation of Lipid-Bilayer Nanodiscs by Diisobutylene/Maleic Acid (DIBMA) Copolymer
- Author
-
Bartholomäus Danielczak, Georg Pabst, Jonathan O. Babalola, Johannes Klingler, Carolyn Vargas, Sandro Keller, and Abraham Olusegun Oluwole
- Subjects
0301 basic medicine ,Maleic acid ,Lipid Bilayers ,Alkenes ,010402 general chemistry ,01 natural sciences ,Thermotropic crystal ,Fluorescence spectroscopy ,03 medical and health sciences ,chemistry.chemical_compound ,Dynamic light scattering ,Electrochemistry ,Copolymer ,Organic chemistry ,General Materials Science ,Lipid bilayer ,Spectroscopy ,Bilayer ,Maleates ,Surfaces and Interfaces ,Condensed Matter Physics ,0104 chemical sciences ,030104 developmental biology ,Membrane ,chemistry ,Chemical engineering - Abstract
Membrane proteins usually need to be extracted from their native environment and separated from other membrane components for in-depth in vitro characterization. The use of styrene/maleic acid (SMA) copolymers to solubilize membrane proteins and their surrounding lipids into bilayer nanodiscs is an attractive approach toward this goal. We have recently shown that a diisobutylene/maleic acid (DIBMA) copolymer similarly solubilizes model and cellular membranes but, unlike SMA(3:1), has a mild impact on lipid acyl-chain order and thermotropic phase behavior. Here, we used fluorescence spectroscopy, small-angle X-ray scattering, size-exclusion chromatography, dynamic light scattering, and 31P nuclear magnetic resonance spectroscopy to examine the self-association of DIBMA and its membrane-solubilization properties against lipids differing in acyl-chain length and saturation. Although DIBMA is less hydrophobic than commonly used SMA(3:1) and SMA(2:1) copolymers, it efficiently formed lipid-bilayer nanodiscs th...
- Published
- 2017
- Full Text
- View/download PDF
4. VIPP1 rods engulf membranes containing phosphatidylinositol phosphates
- Author
-
Jasmine Theis, Sandro Keller, Johannes Klingler, Tilak Kumar Gupta, Sahradha Albert, William Wan, Benjamin D. Engel, and Michael Schroda
- Subjects
Chloroplasts ,Epsin ,lcsh:Medicine ,Chlamydomonas reinhardtii ,Chloroplast membrane ,Article ,Phosphatidylinositol Phosphates ,ddc:570 ,BAR domain ,Photosynthesis ,lcsh:Science ,Phage shock ,Plant Proteins ,Multidisciplinary ,biology ,Chemistry ,lcsh:R ,Membrane Proteins ,food and beverages ,Membranes, Artificial ,biology.organism_classification ,Chloroplast ,Membrane ,Thylakoid ,Biophysics ,lcsh:Q ,Protein Multimerization - Abstract
In cyanobacteria and plants, VIPP1 plays crucial roles in the biogenesis and repair of thylakoid membrane protein complexes and in coping with chloroplast membrane stress. In chloroplasts, VIPP1 localizes in distinct patterns at or close to envelope and thylakoid membranes. In vitro, VIPP1 forms higher-order oligomers of >1 MDa that organize into rings and rods. However, it remains unknown how VIPP1 oligomerization is related to function. Using time-resolved fluorescence anisotropy and sucrose density gradient centrifugation, we show here that Chlamydomonas reinhardtii VIPP1 binds strongly to liposomal membranes containing phosphatidylinositol-4-phosphate (PI4P). Cryo-electron tomography reveals that VIPP1 oligomerizes into rods that can engulf liposomal membranes containing PI4P. These findings place VIPP1 into a group of membrane-shaping proteins including epsin and BAR domain proteins. Moreover, they point to a potential role of phosphatidylinositols in directing the shaping of chloroplast membranes.
- Published
- 2019
- Full Text
- View/download PDF
5. Preparation of ready-to-use small unilamellar phospholipid vesicles by ultrasonication with a beaker resonator
- Author
-
Carolyn Vargas, Sandro Keller, Sebastian Fiedler, and Johannes Klingler
- Subjects
Liposome ,Chromatography ,Chemistry ,Vesicle ,Sonication ,Biophysics ,Equipment Design ,Cell Biology ,Nuclear magnetic resonance spectroscopy ,Biochemistry ,Small molecule ,Dynamic light scattering ,lipids (amino acids, peptides, and proteins) ,Centrifugation ,Lipid bilayer ,Molecular Biology ,Phospholipids ,Unilamellar Liposomes - Abstract
Lipid vesicles are widely used as models to investigate the interactions of proteins, peptides, and small molecules with lipid bilayers. We present a sonication procedure for the preparation of well-defined and ready-to-use small unilamellar vesicles composed of phospholipids with the aid of a beaker resonator. This indirect but efficient sonication method does not require subsequent centrifugation or other purification steps, which distinguishes it from established sonication procedures. Vesicles produced by this method reveal a unimodal size distribution and are unilamellar, as demonstrated by dynamic light scattering and 31P nuclear magnetic resonance spectroscopy, respectively.
- Published
- 2015
- Full Text
- View/download PDF
6. Influence of lipid bilayer properties on nanodisc formation mediated by styrene/maleic acid copolymers
- Author
-
Sandro Keller, Rodrigo Cuevas Arenas, Carolyn Vargas, and Johannes Klingler
- Subjects
0301 basic medicine ,Materials science ,Maleic acid ,Vesicle ,Phospholipid ,Biological membrane ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Membrane ,chemistry ,Chemical engineering ,Organic chemistry ,lipids (amino acids, peptides, and proteins) ,General Materials Science ,Lipid bilayer phase behavior ,Lipid bilayer ,Nanodisc - Abstract
Copolymers of styrene and maleic acid (SMA) have gained great attention as alternatives to conventional detergents, as they offer decisive advantages for studying membrane proteins and lipids in vitro. These polymers self-insert into artificial and biological membranes and, at sufficiently high concentrations, solubilise them into disc-shaped nanostructures containing a lipid bilayer core surrounded by a polymer belt. We have used (31)P nuclear magnetic resonance spectroscopy and dynamic light scattering to systematically study the solubilisation of vesicles composed of saturated or unsaturated phospholipids by an SMA copolymer with a 3 : 1 styrene/maleic acid molar ratio at different temperatures. Solubilisation was thermodynamically rationalised in terms of a three-stage model that treats various lipid/polymer aggregates as pseudophases. The solubilising capacity of SMA(3 : 1) towards a saturated lipid is higher in the gel than in the liquid-crystalline state of the membrane even though solubilisation is slower. Although the solubilisation of mixed fluid membranes is non-selective, the presence of a non-bilayer phospholipid lowers the threshold at which the membrane becomes saturated with SMA(3 : 1) but raises the polymer concentration required for complete solubilisation. Both of these trends can be explained by considering the vesicle-to-nanodisc transfer free energies of the lipid and the polymer. On the basis of the phase diagrams thus obtained, re-association of polymer-solubilised lipids with vesicles is possible under mild conditions, which has implications for the reconstitution of proteins and lipids from nanodiscs into vesicular membranes. Finally, the phase diagrams provide evidence for the absence of free SMA(3 : 1) in vesicular lipid suspensions.
- Published
- 2016
7. Peptide–Membrane Interactions Studied by Isothermal Titration Calorimetry
- Author
-
Johannes Klingler and Sandro Keller
- Subjects
chemistry.chemical_classification ,Membrane ,chemistry ,Partition equilibrium ,Partition (number theory) ,Thermodynamics ,Peptide ,Titration ,Isothermal titration calorimetry ,Electrostatics - Abstract
High-sensitivity isothermal titration calorimetry (ITC; Wiseman et al. 1989) constitutes a particularly useful method for the study of peptide-membrane interactions. A combination of experiments known as uptake and release titrations can be performed and analyzed to assess the thermodynamics of such interactions by means of a surface partition equilibrium (Heerklotz et al. 1999) that is modulated by electrostatics (Keller et al. 2006). is chapter explains the theory of surface partition equilibria and Coulombic membrane eects and demonstrates its implementation in the form of tting equations for the simultaneous analysis of uptake and release experiments, for which the experimental background is also provided and discussed. e theoretical and experimental approach is exemplied usingthe CPP penetratin (Keller et al. 2007), and the driving forces underlying its association with lipid membranes are discussed comprehensively.
- Published
- 2016
- Full Text
- View/download PDF
8. Structural Thermodynamics of myr-Src(2-19) Binding to Phospholipid Membranes
- Author
-
Daniel Huster, Johannes Klingler, Sandro Keller, and Holger A. Scheidt
- Subjects
Lipid Bilayers ,Molecular Sequence Data ,Static Electricity ,Phospholipid ,Biophysics ,Plasma protein binding ,Myristic Acid ,Oncogene Protein pp60(v-src) ,chemistry.chemical_compound ,Protein structure ,Amino Acid Sequence ,Lipid bilayer ,Phospholipids ,Myristoylation ,Membranes ,Chemistry ,Isothermal titration calorimetry ,Protein Structure, Tertiary ,Membrane ,Biochemistry ,Thermodynamics ,lipids (amino acids, peptides, and proteins) ,Peptides ,Proto-oncogene tyrosine-protein kinase Src ,Protein Binding - Abstract
Many proteins are anchored to lipid bilayer membranes through a combination of hydrophobic and electrostatic interactions. In the case of the membrane-bound nonreceptor tyrosine kinase Src from Rous sarcoma virus, these interactions are mediated by an N-terminal myristoyl chain and an adjacent cluster of six basic amino-acid residues, respectively. In contrast with the acyl modifications of other lipid-anchored proteins, the myristoyl chain of Src does not match the host lipid bilayer in terms of chain conformation and dynamics, which is attributed to a tradeoff between hydrophobic burial of the myristoyl chain and repulsion of the peptidic moiety from the phospholipid headgroup region. Here, we combine thermodynamic information obtained from isothermal titration calorimetry with structural data derived from 2H, 13C, and 31P solid-state nuclear magnetic resonance spectroscopy to decipher the hydrophobic and electrostatic contributions governing the interactions of a myristoylated Src peptide with zwitterionic and anionic membranes made from lauroyl (C12:0) or myristoyl (C14:0) lipids. Although the latter are expected to enable better hydrophobic matching, the Src peptide partitions more avidly into the shorter-chain lipid analog because this does not require the myristoyl chain to stretch extensively to avoid unfavorable peptide/headgroup interactions. Moreover, we find that Coulombic and intrinsic contributions to membrane binding are not additive, because the presence of anionic lipids enhances membrane binding more strongly than would be expected on the basis of simple Coulombic attraction.
- Published
- 2015
9. Membrane partitioning and translocation studied by isothermal titration calorimetry
- Author
-
Carolyn, Vargas, Johannes, Klingler, and Sandro, Keller
- Subjects
Solutions ,Membranes ,Lipid Bilayers ,Thermodynamics ,Calorimetry ,Permeability - Abstract
The ability to bind to and translocate across lipid bilayers is of paramount importance for the extracellular administration of intracellularly active compounds in cell biology, medicinal chemistry, and drug development. A combination of the so-called uptake and release experiments performed by high-sensitivity isothermal titration calorimetry provides a powerful and universally applicable tool for measuring membrane binding and translocation of various compound classes in a label-free manner in solution. The protocol presented here is designed for a quantitative analysis of microcalorimetric uptake and release titrations. In contrast with simpler approaches described previously, it is applicable also to electrically charged solutes, such as peptides and proteins, experimentally and clinically relevant surfactants, drugs, metal ions, and other ionic compounds.
- Published
- 2013
10. Membrane Partitioning and Translocation Studied by Isothermal Titration Calorimetry
- Author
-
Johannes Klingler, Carolyn Vargas, and Sandro Keller
- Subjects
Membrane ,Biochemistry ,Chemistry ,Metal ions in aqueous solution ,Extracellular ,Biophysics ,Ionic bonding ,Isothermal titration calorimetry ,Titration ,Lipid bilayer ,Quantitative analysis (chemistry) - Abstract
The ability to bind to and translocate across lipid bilayers is of paramount importance for the extracellular administration of intracellularly active compounds in cell biology, medicinal chemistry, and drug development. A combination of the so-called uptake and release experiments performed by high-sensitivity isothermal titration calorimetry provides a powerful and universally applicable tool for measuring membrane binding and translocation of various compound classes in a label-free manner in solution. The protocol presented here is designed for a quantitative analysis of microcalorimetric uptake and release titrations. In contrast with simpler approaches described previously, it is applicable also to electrically charged solutes, such as peptides and proteins, experimentally and clinically relevant surfactants, drugs, metal ions, and other ionic compounds.
- Published
- 2013
- Full Text
- View/download PDF
11. Self-Assembly Thermodynamics of pH-Responsive Amino-Acid-Based Polymers with a Nonionic Surfactant
- Author
-
Sandro Keller, Sergey K. Filippov, Anna Bogomolova, Adriana Sturcova, Dmytro Rak, Martin Hruby, Marián Sedlák, Petr Stepanek, and Johannes Klingler
- Subjects
Exothermic reaction ,chemistry.chemical_classification ,Molecular Structure ,Polymers ,Infrared spectroscopy ,Isothermal titration calorimetry ,Surfaces and Interfaces ,Polymer ,Hydrogen-Ion Concentration ,Condensed Matter Physics ,Endothermic process ,Polyethylene Glycols ,Surface-Active Agents ,Pulmonary surfactant ,chemistry ,Dynamic light scattering ,Polymer chemistry ,Electrochemistry ,Side chain ,Plant Oils ,Thermodynamics ,General Materials Science ,Amino Acids ,Spectroscopy - Abstract
The behavior of pH-responsive polymers poly(N-methacryloyl-l-valine) (P1), poly(N-methacryloyl-l-phenylalanine) (P2), and poly(N-methacryloylglycyne-l-leucine) (P3) has been studied in the presence of the nonionic surfactant Brij98. The pure polymers phase-separate in an acidic medium with critical pHtr values of 3.7, 5.5, and 3.4, respectively. The addition of the surfactant prevents phase separation and promotes reorganization of polymer molecules. The nature of the interaction between polymer and surfactant depends on the amino acid structure in the side chain of the polymer. This effect was investigated by dynamic light scattering, isothermal titration calorimetry, electrophoretic measurements, small-angle neutron scattering, and infrared spectroscopy. Thermodynamic analysis revealed an endothermic association reaction in P1/Brij98 mixture, whereas a strong exothermic effect was observed for P2/Brij98 and P3/Brij98. Application of regular solution theory for the analysis of experimental enthalpograms indicated dominant hydrophobic interactions between P1 and Brij98 and specific interactions for the P2/Brij98 system. Electrophoretic and dynamic light scattering measurements support the applicability of the theory to these cases. The specific interactions can be ascribed to hydrogen bonds formed between the carboxylic groups of the polymer and the oligo(ethylene oxide) head groups of the surfactant. Thus, differences in polymer-surfactant interactions between P1 and P2 polymers result in different structures of polymer-surfactant complexes. Specifically, small-angle neutron scattering revealed pearl-necklace complexes and "core-shell" structures for P1/Brij98 and P2/Brij98 systems, respectively. These results may help in the design of new pH-responsive site-specific micellar drug delivery systems or pH-responsive membrane-disrupting agents.
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.