136 results on '"Jon D. Rainier"'
Search Results
2. The synthesis of the very long chain polyunsaturated fatty acid (VLC-PUFA) 32:6 n-3
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Rameshu Rallabandi, Jon D. Rainier, Alexander Wade, Steven Lucas, Aruna Gorusupudi, Catrina Oberg, and Paul S. Bernstein
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0301 basic medicine ,chemistry.chemical_classification ,Chemistry ,Organic Chemistry ,Very long chain ,Biochemistry ,03 medical and health sciences ,Retinal tissue ,030104 developmental biology ,0302 clinical medicine ,030221 ophthalmology & optometry ,Physical and Theoretical Chemistry ,Polyunsaturated fatty acid - Abstract
This article describes the synthesis of VLC-PUFA 32:6 n-3, D2-labeled 32:6 n-3, and the uptake of 32:6 n-3 into mouse retinal tissue.
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- 2021
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3. Photoelectrocyclization Reactions of Conjugated Cycloalkenones: Scope and Reactivity
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Xuchen Zhao, Jon D. Rainier, and Changqing Song
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Scope (project management) ,010405 organic chemistry ,Hydride ,Chemistry ,Organic Chemistry ,Conjugated system ,Electrophilic aromatic substitution ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,Article ,0104 chemical sciences ,Cyclization ,Excited state ,Reactivity (chemistry) ,Singlet state ,Protons - Abstract
Outlined here are studies exploring the scope of the sequential photoelectrocyclization, [1,5]-hydride shift of conjugated bis-aryl cycloalkenone substrates. We have found not only that the cyclization precursors can be synthesized in a modular fashion but also that the cyclization is efficient and amenable to the presence of a range of cycloalkenones and aromatic systems. Among the interesting discoveries from this work is that the electrocyclization intermediate can be competitively captured with protons and that the nature of the excited state (singlet vs triplet) is dependent on aromatic substitution.
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- 2020
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4. Photoelectrocyclization Reactions of Amidonaphthoquinones
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Jinya Yin, Jon D. Rainier, and Michael B. Landward
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Biological Products ,010405 organic chemistry ,Extramural ,Organic Chemistry ,Anthraquinones ,010402 general chemistry ,01 natural sciences ,Combinatorial chemistry ,Article ,Anti-Bacterial Agents ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Acrylamide ,Antibacterial activity ,Naphthoquinones - Abstract
Readily available acrylamide naphthoquinones can be converted into the corresponding aza-anthraquinones using 6π-photoelectrocyclization reactions. Not only do these reactions not proceed thermally but, as demonstrated here, they can also be used to generate a range of aza-anthraquinone and aza-tetracycline derivatives including the natural products griffithazanone A and marcanine A. Several of the aza-anthraquinones generated in this work showed antibacterial activity.
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- 2020
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5. Synthesis of the debrominated analog of dihydroflustramine C utilizing a sulfur ylide-initiated thio-Claisen rearrangement
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Amir Sabahi and Jon D. Rainier
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Organic chemistry ,QD241-441 - Published
- 2010
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6. Influence of very-long-chain polyunsaturated fatty acids on membrane structure and dynamics
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Victoria Cheng, Rameshu Rallabandi, Aruna Gorusupudi, Steven Lucas, Gregory Rognon, Paul S. Bernstein, Jon D. Rainier, and John C. Conboy
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Spectrum Analysis ,Fatty Acids ,Biophysics ,Fatty Acids, Unsaturated ,Phosphatidylcholines ,Biological Transport - Abstract
The unique attributes of very-long-chain polyunsaturated fatty acids (VLC-PUFAs), their long carbon chains (n 24) and high degree of unsaturation, impart unique chemical and physical properties to this class of fatty acids. The changes imparted by VLC-PUFA 32:6 n-3 on lipid packing and the compression moduli of model membranes were evaluated from π-A isotherms of VLC-PUFA in 1,2-distearoyl-sn-3-glycero-phosphocholine (DSPC) lipid monolayers. To compare the attractive or repulsive forces between VLC-PUFA and DSPC lipid monolayers, the measured mean molecular areas (MMAs) were compared with the calculated MMAs of an ideal mixture of VLC-PUFA and DSPC. The presence of 0.1, 1, and 10 mol % VLC-PUFA shifted the π-A isotherm to higher MMAs of the lipids comprising the membrane and the observed positive deviations from ideal behavior of the mixed VLC-PUFA:DSPC monolayers correspond to repulsive forces between VLC-PUFAs and DSPC. The MMA of the VLC-PUFA component was estimated using the measured MMAs of DSPC of 47.1 ± 0.7 Å
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- 2022
7. A biaryl-cyclohexenone photoelectrocyclization/dearomatization sequence to substituted terpenes
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K.S. Satyanarayana Tummalapalli, Xuchen Zhao, and Jon D. Rainier
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Organic Chemistry ,Drug Discovery ,Biochemistry - Published
- 2023
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8. The Synthesis of Conjugated Bis-Aryl Vinyl Substrates and Their Photoelectrocyclization Reactions towards Phenanthrene Derivatives
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Xuchen Zhao and Jon D. Rainier
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chemistry.chemical_compound ,Natural product ,chemistry ,Aryl ,Organic Chemistry ,Aromaticity ,Phenanthrene ,Conjugated system ,Combinatorial chemistry ,Catalysis ,Article - Abstract
The photoelectrocyclization of conjugated vinyl biaryls has proven to be a valuable and efficient strategy for generating phenanthrene derivatives. Contained in this review is an overview of the mechanism for the transformation and a discussion of the reaction scope with a focus on the electrocyclization itself, rearomatization, and the application of the reaction in natural product synthesis.1 Introduction2 The Synthesis of Conjugated Vinyl Biaryls3 Mechanistic Studies4 Substrate Scope5 Applications6 Conclusions
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- 2021
9. Stereodivergent Photoelectrocyclization Reactions of Bis-aryl Cycloalkenones: Intercepting Photoelectrocyclization Intermediates with Acid
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Jon D. Rainier, Xuchen Zhao, and Changqing Song
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Tandem ,Aryl ,Organic Chemistry ,Stereoisomerism ,Ketones ,Photochemical Processes ,Biochemistry ,Article ,chemistry.chemical_compound ,chemistry ,Cyclization ,Cyclohexenone ,Computational chemistry ,Electrochemistry ,Physical and Theoretical Chemistry - Abstract
Described here are tandem photoelectrocyclization and [l,5]-hydride shift reactions of heteroaryl-containing bis-aryl cyclohexenone derivatives that give heteroaryl-substituted dihydrophenanthrenes. This Letter demonstrates that electrocyclization intermediates can be trapped with acid when the [l,5]-hydride shift is relatively slow. From a practical perspective, the observation that the acid-mediated reaction gives a divergent stereochemical outcome when compared with the reaction run under neutral conditions makes these transformations powerful.
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- 2019
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10. Concise Seven-Membered Oxepene/Oxepane Synthesis – Structural Motifs in Natural and Synthetic Products
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Jon D. Rainier and Clement Osei Akoto
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Olefin metathesis ,010405 organic chemistry ,Organic Chemistry ,010402 general chemistry ,Metathesis ,01 natural sciences ,Adriatoxin ,Combinatorial chemistry ,Catalysis ,Wilkinson's catalyst ,0104 chemical sciences ,Oxepane ,chemistry.chemical_compound ,chemistry ,Structural motif - Abstract
This work outlines a suitable method for the synthesis of oxepane skeleton using iterative C-glycoside technology on the oxepene intermediate, which was synthesized utilizing Wilkinson’s catalyst [Rh(PPh3)3Cl] to generate the isomerized product in a linear synthetic manner. The central core of the oxepene motif was achieved via an olefin metathesis reaction using the Grubbs second-generation and Schrock catalysts. The synthesis of the functionalized oxepane having the desired adriatoxin E-ring relative stereochemistry was achieved starting from commercially available homopropargylic alcohol.
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- 2019
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11. Retinal bioavailability and functional effects of a synthetic very-long-chain polyunsaturated fatty acid in mice
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Ranganathan Arunkumar, John C. Conboy, Paul S. Bernstein, Aruna Gorusupudi, Binxing Li, Gregory T. Rognon, Fu-Yen Chang, Alexander Wade, Jon D. Rainier, Rameshu Rallabandi, Steven Lucas, and J. David Blount
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0301 basic medicine ,Retinal degeneration ,genetic structures ,Visual Acuity ,Biological Availability ,Biology ,Pharmacology ,Retina ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Conditional gene knockout ,medicine ,Animals ,Humans ,Eye Proteins ,Mice, Knockout ,chemistry.chemical_classification ,Multidisciplinary ,medicine.diagnostic_test ,Retinal Degeneration ,Membrane Proteins ,food and beverages ,Retinal ,Biological Sciences ,Macular degeneration ,medicine.disease ,eye diseases ,Bioavailability ,Disease Models, Animal ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,Fatty Acids, Unsaturated ,030221 ophthalmology & optometry ,lipids (amino acids, peptides, and proteins) ,sense organs ,Electroretinography ,Polyunsaturated fatty acid - Abstract
Rare, nondietary very-long-chain polyunsaturated fatty acids (VLC-PUFAs) are uniquely found in the retina and a few other vertebrate tissues. These special fatty acids play a clinically significant role in retinal degeneration and development, but their physiological and interventional research has been hampered because pure VLC-PUFAs are scarce. We hypothesize that if Stargardt-3 or age-related macular degeneration patients were to consume an adequate amount of VLC-PUFAs that could be directly used in the retina, it may be possible to bypass the steps of lipid elongation mediated by the retina’s ELOVL4 enzyme and to delay or prevent degeneration. We report the synthesis of a VLC-PUFA (32:6 n-3) in sufficient quantity to study its bioavailability and functional benefits in the mouse retina. We acutely and chronically gavage fed wild-type mice and Elovl4 rod–cone conditional knockout mice this synthetic VLC-PUFA to understand its bioavailability and its role in visual function. VLC-PUFA-fed wild-type and Elovl4 conditional knockout mice show a significant increase in retinal VLC-PUFA levels in comparison to controls. The VLC-PUFA-fed mice also had improvement in the animals’ visual acuity and electroretinography measurements. Further studies with synthetic VLC-PUFAs will continue to expand our understanding of the physiological roles of these unique retinal lipids, particularly with respect to their potential utility for the treatment and prevention of retinal degenerative diseases.
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- 2021
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12. Gambierol and n-alkanols inhibit Shaker Kv channel via distinct binding sites outside the K+ pore
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Jon D. Rainier, Dirk J. Snyders, Jan Tytgat, Evelyn Martinez-Morales, Alain J. Labro, and Ivan Kopljar
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0301 basic medicine ,Stereochemistry ,Mutant ,Gating ,Toxicology ,Article ,Ciguatoxins ,Kv channel ,03 medical and health sciences ,1-Butanol ,0302 clinical medicine ,Potassium Channel Blockers ,Shaker ,Binding site ,Ion channel ,Binding Sites ,urogenital system ,Chemistry ,Pharmacology. Therapy ,musculoskeletal, neural, and ocular physiology ,equipment and supplies ,Potassium channel ,030104 developmental biology ,Shaker Superfamily of Potassium Channels ,lipids (amino acids, peptides, and proteins) ,Ion Channel Gating ,N alkanols ,030217 neurology & neurosurgery - Abstract
The marine polycyclic-ether toxin gambierol and 1-butanol (n-alkanol) inhibit Shaker-type Kv channels by interfering with the gating machinery. Competition experiments indicated that both compounds do not share an overlapping binding site but gambierol is able to affect 1-butanol affinity for Shaker through an allosteric effect. Furthermore, the Shaker-P475A mutant, which inverses 1-butanol effect, is inhibited by gambierol with nM affinity. Thus, gambierol and 1-butanol inhibit Shaker-type Kv channels via distinct parts of the gating machinery.
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- 2016
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13. Dimerization of visual pigments in vivo
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Xuchen Zhao, Sandeep Kumar, Emily Dennis, Yingbin Fu, Amrita Fnu, King Wai Yau, Nduka Enemchukwu, Jon D. Rainier, Alex Jones, Ning Zhang, Tao Zhang, Alyssia Lambert, S. Wang, Sam Ham, and Li Hui Cao
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0301 basic medicine ,genetic structures ,Transgene ,Context (language use) ,Endoplasmic Reticulum ,Mice ,03 medical and health sciences ,Animals ,Multidisciplinary ,Opsins ,biology ,Perinuclear endoplasmic reticulum ,Biological Sciences ,Chromophore ,eye diseases ,Transmembrane domain ,030104 developmental biology ,Biochemistry ,Rhodopsin ,Helix ,biology.protein ,Biophysics ,sense organs ,Protein Multimerization ,Reactive Oxygen Species ,Retinal Pigments ,Function (biology) - Abstract
It is a deeply engrained notion that the visual pigment rhodopsin signals light as a monomer, even though many G protein-coupled receptors are now known to exist and function as dimers. Nonetheless, recent studies (albeit all in vitro) have suggested that rhodopsin and its chromophore-free apoprotein, R-opsin, may indeed exist as a homodimer in rod disk membranes. Given the overwhelmingly strong historical context, the crucial remaining question, therefore, is whether pigment dimerization truly exists naturally and what function this dimerization may serve. We addressed this question in vivo with a unique mouse line (S-opsin+Lrat−/−) expressing, transgenically, short-wavelength–sensitive cone opsin (S-opsin) in rods and also lacking chromophore to exploit the fact that cone opsins, but not R-opsin, require chromophore for proper folding and trafficking to the photoreceptor’s outer segment. In R-opsin’s absence, S-opsin in these transgenic rods without chromophore was mislocalized; in R-opsin’s presence, however, S-opsin trafficked normally to the rod outer segment and produced functional S-pigment upon subsequent chromophore restoration. Introducing a competing R-opsin transmembrane helix H1 or helix H8 peptide, but not helix H4 or helix H5 peptide, into these transgenic rods caused mislocalization of R-opsin and S-opsin to the perinuclear endoplasmic reticulum. Importantly, a similar peptide-competition effect was observed even in WT rods. Our work provides convincing evidence for visual pigment dimerization in vivo under physiological conditions and for its role in pigment maturation and targeting. Our work raises new questions regarding a potential mechanistic role of dimerization in rhodopsin signaling.
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- 2016
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14. Synthesis of the ABCDEF and FGHI ring system of yessotoxin and adriatoxin
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Yuan Zhang and Jon D. Rainier
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Antifungal ,medicine.drug_class ,Mollusk Venoms ,Ether ,Chemistry Techniques, Synthetic ,Biology ,ring-closing metathesis ,010402 general chemistry ,01 natural sciences ,Adriatoxin ,Article ,Beta-lactam ,chemistry.chemical_compound ,Drug Discovery ,medicine ,Animals ,ciguatera ,Pharmacology ,Biological Products ,Molecular Structure ,010405 organic chemistry ,Extramural ,Oxocins ,glycal ,polycyclic ether ,Combinatorial chemistry ,yessotoxin ,0104 chemical sciences ,Pectinidae ,chemistry ,Cyclization ,Pyran ,Dinoflagellida ,adriatoxin ,Yessotoxin ,Merge (version control) - Abstract
Yessotoxin and adriatoxin are members of the polycyclic ether family of marine natural products. Outlined in this article is our synthetic approach to two subunits of these targets. Central to our strategy is a coupling sequence that employs an olefinic-ester cyclization reaction. As outlined, this sequence was used in two coupling sequences. First, it was used to merge the A, B- and E, F-bicyclic precursors and in the process generate the C- and D-rings. Second, it was used to couple the F- and I-rings while building the eight-membered G-ring and subsequently the H-ring pyran.
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- 2016
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15. Disruption of Rhodopsin Dimerization in Mouse Rod Photoreceptors by Synthetic Peptides Targeting Dimer Interface
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Yingbin Fu, Alyssia Lambert, Jon D. Rainier, and Sandeep Kumar
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0301 basic medicine ,Rhodopsin ,genetic structures ,Dimer ,Peptide ,Endoplasmic Reticulum ,Article ,Protein Structure, Secondary ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,Retinal Rod Photoreceptor Cells ,Animals ,G protein-coupled receptor ,chemistry.chemical_classification ,030102 biochemistry & molecular biology ,biology ,Perinuclear endoplasmic reticulum ,Chemistry ,Endoplasmic reticulum ,Transmembrane protein ,030104 developmental biology ,Helix ,biology.protein ,Biophysics ,Nanoparticles ,sense organs ,Injections, Intraocular ,Protein Multimerization ,Peptides - Abstract
Synthetic peptides derived from transmembrane segments of G protein-coupled receptors (GPCR) are used to disrupt GPCR dimer interface. This peptide competition technique is an effective approach to map the dimer interface of GPCR and its functional significance. Here we present a technique to deliver synthetic transmembrane peptides to living mouse rod photoreceptors to disrupt rhodopsin (a prototypical member of Class A GPCRs) dimer formation in the endoplasmic reticulum (ER). We have shown that rhodopsin helix H1- or H8-peptide caused mislocalization of rhodopsin to the perinuclear endoplasmic reticulum (ER).
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- 2018
16. Proteolytic Degradation and Inflammation Play Critical Roles in Polypoidal Choroidal Vasculopathy
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Xuchen Zhao, Zachary Berriochoa, Alex Jones, Hiroyuki Nakashizuka, Alyssia Lambert, Sandeep Kumar, Yingbin Fu, Megan Shen, Jon D. Rainier, Stephanie VanBeuge, Amrita Fnu, S. Wang, Mackenzie Parker, Patricia Chévez-Barrios, and Mark O.M. Tso
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0301 basic medicine ,Male ,Inflammation ,Mice, Transgenic ,Biology ,complex mixtures ,Article ,Pathology and Forensic Medicine ,Pathogenesis ,Extracellular matrix ,03 medical and health sciences ,Macular Degeneration ,Mice ,0302 clinical medicine ,medicine ,Animals ,Humans ,Aged ,Aged, 80 and over ,Retinal pigment epithelium ,High-Temperature Requirement A Serine Peptidase 1 ,Macular degeneration ,Middle Aged ,medicine.disease ,eye diseases ,Choroidal Neovascularization ,Complement system ,030104 developmental biology ,medicine.anatomical_structure ,Choroidal neovascularization ,HTRA1 ,Immunology ,Proteolysis ,030221 ophthalmology & optometry ,Wet Macular Degeneration ,Female ,medicine.symptom - Abstract
Polypoidal choroidal vasculopathy (PCV) is a common subtype of wet age-related macular degeneration in Asian populations, whereas choroidal neovascularization is the typical subtype in Western populations. The cause of PCV is unknown. By comparing the phenotype of a PCV mouse model expressing protease high temperature requirement factor A1 (HTRA1) in retinal pigment epithelium with transgenic mice expressing the inactive HTRA1S328A, we showed that HTRA1-mediated degradation of elastin in choroidal vessels is critical for the development of PCV, which exhibited destructive extracellular matrix remodeling and vascular smooth muscle cell loss. Compared with weak PCV, severe PCV exhibited prominent immune complex deposition, complement activation, and infiltration of inflammatory cells, suggesting inflammation plays a key role in PCV progression. More important, we validated these findings in human PCV specimens. Intravitreal delivery of an HTRA1 inhibitor (DPMFKLboroV) was effective (36% lesion reduction; P = 0.009) in preventing PCV initiation but ineffective in treating existing lesions. Anti-inflammatory glucocorticoid was effective in preventing PCV progression but ineffective in preventing PCV initiation. These results suggest that PCV pathogenesis occurs through two stages. The initiation stage is mediated by proteolytic degradation of extracellular matrix proteins attributable to increased HTRA1 activity, whereas the progression stage is driven by inflammatory cascades. This study provides a basis for understanding the differences between PCV and choroidal neovascularization, and helps guide the design of effective therapies for PCV.
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- 2017
17. Reactivity of Vinyl Phosphonate Containing Diazoesters: Formation, Reactivity, and Utility
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Jin Wang and Jon D. Rainier
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chemistry.chemical_compound ,chemistry ,Bicyclic molecule ,Organic Chemistry ,Organic chemistry ,Diazo ,Reactivity (chemistry) ,Stereoselectivity ,Physical and Theoretical Chemistry ,Biochemistry ,Phosphonate ,Enol - Abstract
Treatment of diazo vinyl phosphonate with alcohols, amines, and thiols in the presence of Rh(II) results in the chemo- and stereoselective generation of enol ethers, enamines and vinyl sulfides via an X-H insertion process. The utility of the products from these reactions was demonstrated through their conversion into quaternary substituted heterocycles including furans and oxetanes as highlighted by the generation of a bicyclic phosphonate analogue of neodysiherbaine.
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- 2014
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18. Gambierol Inhibition of Voltage-Gated Potassium Channels Augments Spontaneous Ca2+ Oscillations in Cerebrocortical Neurons
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Thomas F. Murray, Suneet Mehrotra, Yanjun Cui, Jon D. Rainier, Eric Busse, and Zhengyu Cao
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Stereochemistry ,Toxicology ,Ciguatoxins ,Mice ,Potassium Channel Blockers ,medicine ,Animals ,Calcium Signaling ,Cells, Cultured ,Calcium signaling ,Cerebral Cortex ,Neurons ,Pharmacology ,Dose-Response Relationship, Drug ,Chemistry ,Sodium channel ,Potassium channel blocker ,Voltage-gated potassium channel ,Potassium channel ,MTEP ,Potassium Channels, Voltage-Gated ,Metabotropic glutamate receptor ,Biophysics ,Molecular Medicine ,NMDA receptor ,Calcium ,medicine.drug - Abstract
Gambierol is a marine polycyclic ether toxin produced by the marine dinoflagellate Gambierdiscus toxicus and is a member of the ciguatoxin toxin family. Gambierol has been demonstrated to be either a low-efficacy partial agonist/antagonist of voltage-gated sodium channels or a potent blocker of voltage-gated potassium channels (Kvs). Here we examined the influence of gambierol on intact cerebrocortical neurons. We found that gambierol produced both a concentration-dependent augmentation of spontaneous Ca(2+) oscillations, and an inhibition of Kv channel function with similar potencies. In addition, an array of selective as well as universal Kv channel inhibitors mimicked gambierol in augmenting spontaneous Ca(2+) oscillations in cerebrocortical neurons. These data are consistent with a gambierol blockade of Kv channels underlying the observed increase in spontaneous Ca(2+) oscillation frequency. We also found that gambierol produced a robust stimulation of phosphorylation of extracellular signal-regulated kinases 1/2 (ERK1/2). Gambierol-stimulated ERK1/2 activation was dependent on both inotropic [N-methyl-d-aspartate (NMDA)] and type I metabotropic glutamate receptors (mGluRs) inasmuch as MK-801 [NMDA receptor inhibitor; (5S,10R)-(+)-5-methyl-10,11-dihydro-5H-dibenzo[a,d]cyclohepten-5,10-imine maleate], S-(4)-CGP [S-(4)-carboxyphenylglycine], and MTEP [type I mGluR inhibitors; 3-((2-methyl-4-thiazolyl)ethynyl) pyridine] attenuated the response. In addition, 2-aminoethoxydiphenylborane, an inositol 1,4,5-trisphosphate receptor inhibitor, and U73122 (1-[6-[[(17b)-3-methoxyestra-1,3,5(10)-trien-17-yl]amino]hexyl]-1H-pyrrole-2,5-dione), a phospholipase C inhibitor, both suppressed gambierol-induced ERK1/2 activation, further confirming the role of type I mGluR-mediated signaling in the observed ERK1/2 activation. Finally, we found that gambierol produced a concentration-dependent stimulation of neurite outgrowth that was mimicked by 4-aminopyridine, a universal potassium channel inhibitor. Considered together, these data demonstrate that gambierol alters both Ca(2+) signaling and neurite outgrowth in cerebrocortical neurons as a consequence of blockade of Kv channels.
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- 2014
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19. Iodohexahydropyridoindolones. Formation and reactivity
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Somnath Jana, Jon D. Rainier, and Rameshu Rallabandi
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Indole test ,chemistry.chemical_compound ,chemistry ,Aryl ,Organic Chemistry ,Drug Discovery ,Free-radical reaction ,Atom (order theory) ,Reactivity (chemistry) ,Photochemistry ,Biochemistry - Abstract
Described herein is the generation and use of iodohexahydropyridoindolines and their free radical atom transfer reactions with aryl acetylenes to generate quaternary substituted pyridoindolones.
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- 2015
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20. The Synthesis of Indoline and Benzofuran Scaffolds Using a Suzuki–Miyaura Coupling/Oxidative Cyclization Strategy
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Somnath Jana and Jon D. Rainier
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Oxidative cyclization ,Indoles ,Molecular Structure ,Chemistry ,Organic Chemistry ,Biochemistry ,Combinatorial chemistry ,Catalysis ,Coupling reaction ,Coupling (electronics) ,chemistry.chemical_compound ,Cyclization ,Indoline ,Physical and Theoretical Chemistry ,Benzofuran ,Oxidation-Reduction ,Benzofurans - Abstract
The generation of indolines and benzofurans from the combination of Suzuki-Miyaura coupling reactions with oxidative cyclizations is described.
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- 2013
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21. The ladder-shaped polyether toxin gambierol anchors the gating machinery of Kv3.1 channels in the resting state
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Jon D. Rainier, Tessa de Block, Alain J. Labro, Dirk J. Snyders, Ivan Kopljar, and Jan Tytgat
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CURRENTS ,MECHANISM ,Physiology ,Action Potentials ,TRANSITIONS ,Nanotechnology ,Gating ,PORE DOMAIN ,Permeability ,Cell Line ,Membrane Potentials ,Ciguatoxins ,Mice ,Structure-Activity Relationship ,Medicine and Health Sciences ,Animals ,Structure–activity relationship ,Hanatoxin ,CHARGE MOVEMENT ,WILD-TYPE ,Binding site ,Biology ,Membrane potential ,Binding Sites ,VOLTAGE-DEPENDENT K+ ,Resting state fMRI ,Chemistry ,Physics ,Biology and Life Sciences ,Depolarization ,ACTIVATION GATE ,Fibroblasts ,Potassium channel ,Kinetics ,Shaw Potassium Channels ,Potassium Channels, Voltage-Gated ,Biophysics ,POTASSIUM CHANNEL ,Human medicine ,CIGUATOXINS ,Ion Channel Gating ,Research Article - Abstract
Voltage-gated potassium (Kv) and sodium (Nav) channels are key determinants of cellular excitability and serve as targets of neurotoxins. Most marine ciguatoxins potentiate Nav channels and cause ciguatera seafood poisoning. Several ciguatoxins have also been shown to affect Kv channels, and we showed previously that the ladder-shaped polyether toxin gambierol is a potent Kv channel inhibitor. Most likely, gambierol acts via a lipid-exposed binding site, located outside the K+ permeation pathway. However, the mechanism by which gambierol inhibits Kv channels remained unknown. Using gating and ionic current analysis to investigate how gambierol affected S6 gate opening and voltage-sensing domain (VSD) movements, we show that the resting (closed) channel conformation forms the high-affinity state for gambierol. The voltage dependence of activation was shifted by >120 mV in the depolarizing direction, precluding channel opening in the physiological voltage range. The (early) transitions between the resting and the open state were monitored with gating currents, and provided evidence that strong depolarizations allowed VSD movement up to the activated-not-open state. However, for transition to the fully open (ion-conducting) state, the toxin first needed to dissociate. These dissociation kinetics were markedly accelerated in the activated-not-open state, presumably because this state displayed a much lower affinity for gambierol. A tetrameric concatemer with only one high-affinity binding site still displayed high toxin sensitivity, suggesting that interaction with a single binding site prevented the concerted step required for channel opening. We propose a mechanism whereby gambierol anchors the channel’s gating machinery in the resting state, requiring more work from the VSD to open the channel. This mechanism is quite different from the action of classical gating modifier peptides (e.g., hanatoxin). Therefore, polyether toxins open new opportunities in structure–function relationship studies in Kv channels and in drug design to modulate channel function.
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- 2013
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22. Total Syntheses of Kapakahines E and F
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Vinson R. Espejo and Jon D. Rainier
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Indole test ,chemistry.chemical_classification ,General method ,Nucleophile ,Negishi coupling ,Stereochemistry ,Chemistry ,Total synthesis ,General Chemistry ,Combinatorial chemistry ,Cyclic peptide - Abstract
This article describes the synthesis of kapakahines E and F, along with what we believe to be a general method for the total synthesis of the kapakahine family of marine natural products. The method utilizes a unique heterodimerization reaction between bromopyrroloindolines and indole nucleophiles, a novel pyrroloindoline-to-α-carboline rearrangement, and a Negishi coupling reaction of C(3)-iodoindoles.
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- 2011
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23. Total Synthesis of Brevenal
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Yuan Zhang, Jie Zhou, Jon D. Rainier, K. Iyer, and John C. Rohanna
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Polymers ,Chemistry ,education ,Total synthesis ,General Chemistry ,Alkenes ,Biochemistry ,Article ,Catalysis ,Colloid and Surface Chemistry ,Cyclization ,Dinoflagellida ,Epoxy Compounds ,Organic chemistry ,Marine Toxins ,Ethers - Abstract
This manuscript describes the total synthesis of the marine ladder toxin brevenal utilizing a convergent synthetic strategy. Critical to the success of this work was the use of olefinic-ester cyclization reactions and the utilization of glycal epoxides as precursors to C–C and C–H bonds.
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- 2011
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24. Total Synthesis of Kapakahine E and F
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Jon D. Rainier and Vinson R. Espejo
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chemistry.chemical_classification ,Indoles ,Negishi coupling ,Stereochemistry ,Organic Chemistry ,Total synthesis ,Peptides, Cyclic ,Biochemistry ,Cyclic peptide ,chemistry.chemical_compound ,chemistry ,Indoline ,Organic chemistry ,Physical and Theoretical Chemistry ,Kapakahine E ,Dimerization - Abstract
The total synthesis of the cyclic peptides kapakahine E and F using bromopyrroloindoline heterodimerization reactions, indoline to alpha-carboline rearrangements, and Negishi coupling reactions is described.
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- 2010
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25. ASIC1 and ASIC3 Play Different Roles in the Development of Hyperalgesia After Inflammatory Muscle Injury
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John A. Wemmie, Jon D. Rainier, Alan R. Light, Kathleen A. Sluka, Lynn A. Rasmussen, and Roxanne Y. Walder
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Male ,medicine.medical_specialty ,Sensory Receptor Cells ,Nerve Tissue Proteins ,Inflammation ,Naphthalenes ,Carrageenan ,Sodium Channels ,Article ,Mice ,Ganglia, Spinal ,Internal medicine ,medicine ,Noxious stimulus ,Animals ,RNA, Messenger ,Enzyme Inhibitors ,Muscle, Skeletal ,Acid-sensing ion channel ,Mice, Knockout ,Myositis ,Foot ,business.industry ,Sodium channel ,Wild type ,Nociceptors ,Isoquinolines ,Acid Sensing Ion Channels ,Mice, Inbred C57BL ,Anesthesiology and Pain Medicine ,Endocrinology ,Neurology ,Hyperalgesia ,Anesthesia ,Knockout mouse ,Nociceptor ,Female ,Neurology (clinical) ,Inflammation Mediators ,medicine.symptom ,business - Abstract
Acid-sensing ion channels (ASICs) respond to acidosis that normally occurs after inflammation. We examined the expression of ASIC1 , ASIC2 , and ASIC3 mRNAs in lumbar dorsal root ganglion neurons before and 24 hours after carrageenan-induced muscle inflammation. Muscle inflammation causes bilateral increases of ASIC2 and ASIC3 but not ASIC1 (neither ASIC1a nor ASIC1b ) mRNA, suggesting differential regulation of ASIC1 versus ASIC2 and ASIC3 mRNA. Similar mRNA increases were observed after inflammation in knockout mice: ASIC2 mRNA increases in ASIC3-/- mice; ASIC2 and ASIC3 mRNAs increase in ASIC1-/- mice. Prior behavioral studies in ASIC3-/- mice showed deficits in secondary hyperalgesia (increased response to noxious stimuli outside the site of injury) but not primary hyperalgesia (increased response to noxious stimuli at the site of injury). In this study, we show that ASIC1-/- mice do not develop primary muscle hyperalgesia but develop secondary paw hyperalgesia. In contrast, and as expected, ASIC3-/- mice develop primary muscle hyperalgesia but do not develop secondary paw hyperalgesia. The pharmacological utility of the nonselective ASIC inhibitor A-317567, given locally, was tested. A-317567 reverses both the primary and the secondary hyperalgesia induced by carrageenan muscle inflammation. Thus, peripherally located ASIC1 and ASIC3 play different roles in the development of hyperalgesia after muscle inflammation. Perspective This study shows changes in ASIC mRNA expression and behavioral hyperalgesia of C57Bl/6 (wild type), ASIC1-/-, and ASIC3-/- mice before and after the induction of muscle inflammation. A-317567 was effective in reversing hyperalgesia in these animals, suggesting the potential of ASICs as therapeutic targets for muscle inflammatory pain.
- Published
- 2010
- Full Text
- View/download PDF
26. Acid-Sensing Ion Channel-1a in the Amygdala, a Novel Therapeutic Target in Depression-Related Behavior
- Author
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Mikael K. Schnizler, Jon D. Rainier, Margaret P. Price, Jill M. Haenfler, Matthew W. Coryell, John A. Wemmie, Zhuqing Liu, Jonathan P. Dunning, Alan R. Light, Adam E. Ziemann, Melloni N. Cook, Jason E. Allen, Douglas R. Langbehn, and Amanda M. Wunsch
- Subjects
Male ,Transgene ,Hippocampus ,Mice, Transgenic ,Nerve Tissue Proteins ,Naphthalenes ,Amygdala ,Sodium Channels ,Article ,Mice ,Drug Delivery Systems ,medicine ,Animals ,Acid-sensing ion channel ,Depressive Disorder ,General Neuroscience ,Sodium channel ,Isoquinolines ,Antidepressive Agents ,Tail suspension test ,Acid Sensing Ion Channels ,medicine.anatomical_structure ,Mood ,Female ,Psychology ,Neuroscience ,Stress, Psychological ,Behavioural despair test - Abstract
No animal models replicate the complexity of human depression. However, a number of behavioral tests in rodents are sensitive to antidepressants and may thus tap important underlying biological factors. Such models may also offer the best opportunity to discover novel treatments. Here, we used several of these models to test the hypothesis that the acid-sensing ion channel-1a (ASIC1a) might be targeted to reduce depression. Genetically disrupting ASIC1a in mice produced antidepressant-like effects in the forced swim test, the tail suspension test, and following unpredictable mild stress. Pharmacologically inhibiting ASIC1a also had antidepressant-like effects in the forced swim test. The effects of ASIC1a disruption in the forced swim test were independent of and additive to those of several commonly used antidepressants. Furthermore, ASIC1a disruption interfered with an important biochemical marker of depression, the ability of stress to reduce BDNF in the hippocampus. Restoring ASIC1a to the amygdala of ASIC1a−/−mice with a viral vector reversed the forced swim test effects, suggesting that the amygdala is a key site of ASIC1a action in depression-related behavior. These data are consistent with clinical studies emphasizing the importance of the amygdala in mood regulation, and suggest that ASIC1a antagonists may effectively combat depression.
- Published
- 2009
- Full Text
- View/download PDF
27. Highly Diastereoselective Sulfonium Ylide Rearrangements to Quaternary Substituted Indolines
- Author
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Jon D. Rainier, Abijah M. Nyong, and Vyacheslav Boyarskikh
- Subjects
Indole test ,chemistry.chemical_classification ,chemistry.chemical_compound ,chemistry ,Sulfonium ,Ylide ,Organic chemistry ,chemistry.chemical_element ,General Chemistry ,General Medicine ,Sulfur ,Catalysis - Published
- 2008
- Full Text
- View/download PDF
28. Synthesis of an A−E Gambieric Acid Subunit with Use of a C-Glycoside Centered Strategy
- Author
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S. W. Roberts and Jon D. Rainier
- Subjects
C glycosides ,Molecular Structure ,Extramural ,Stereochemistry ,Protein subunit ,Organic Chemistry ,Biochemistry ,Enol ,Ciguatoxins ,chemistry.chemical_compound ,chemistry ,Ethers, Cyclic ,Dinoflagellida ,Animals ,Physical and Theoretical Chemistry - Abstract
This paper describes our synthesis of the A-E subunit of gambieric acid (GA) in addition to the synthesis of the A-ring and the C-E tricycle. The use of an enol ether-olefin RCM strategy to couple the A and C-E subunits and, in the process, generate the B-ring is noteworthy.
- Published
- 2007
- Full Text
- View/download PDF
29. Voltage-sensor conformation shapes the intra-membrane drug binding site that determines gambierol affinity in Kv channels
- Author
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Alessandro Grottesi, Dirk J. Snyders, Ivan Kopljar, Alain J. Labro, Jan Tytgat, Tessa de Block, and Jon D. Rainier
- Subjects
0301 basic medicine ,Models, Molecular ,Patch-Clamp Techniques ,Stereochemistry ,Protein Conformation ,Mutant Chimeric Proteins ,Gating ,Article ,Cell Line ,Membrane Potentials ,Ciguatoxins ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Mice ,Protein structure ,Shab Potassium Channels ,Potassium Channel Blockers ,Animals ,Amino Acid Sequence ,Binding site ,Ion channel ,Pharmacology ,Binding Sites ,biology ,Dose-Response Relationship, Drug ,Chemistry ,Sodium channel ,Pharmacology. Therapy ,Voltage-gated potassium channel ,biology.organism_classification ,Gambierdiscus toxicus ,030104 developmental biology ,Shaw Potassium Channels ,Drug Binding Site ,Human medicine - Abstract
Marine ladder-shaped polyether toxins are implicated in neurological symptoms of fish-borne food poisonings. The toxin gambierol, produced by the marine dinoflagellate Gambierdiscus toxicus, belongs to the group of ladder-shaped polyether toxins and inhibits Kv3.1 channels with nanomolar affinity through a mechanism of gating modification. Binding determinants for gambierol localize at the lipid-exposed interface of the pore forming S5 and S6 segments, suggesting that gambierol binds outside of the permeation pathway. To explore a possible involvement of the voltage-sensing domain (VSD), we made different chimeric channels between Kv3.1 and Kv2.1, exchanging distinct parts of the gating machinery. Our results showed that neither the electro-mechanical coupling nor the S1-S3a region of the VSD affect gambierol sensitivity. In contrast, the S3b-S4 part of the VSD (paddle motif) decreased gambierol sensitivity in Kv3.1 more than 100-fold. Structure determination by homology modeling indicated that the position of the S3b-S4 paddle and its primary structure defines the shape and∖or the accessibility of the binding site for gambierol, explaining the observed differences in gambierol affinity between the channel chimeras. Furthermore, these findings explain the observed difference in gambierol affinity for the closed and open channel configurations of Kv3.1, opening new possibilities for exploring the VSDs as selectivity determinants in drug design.
- Published
- 2015
30. ChemInform Abstract: Iodohexahydropyridoindolones. Formation and Reactivity
- Author
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Rameshu Rallabandi, Somnath Jana, and Jon D. Rainier
- Subjects
chemistry.chemical_compound ,Chemistry ,Aryl ,Atom ,Halogenation ,Reactivity (chemistry) ,General Medicine ,Photochemistry ,Combinatorial chemistry - Abstract
Described herein is the generation and use of iodohexahydropyridoindolines and their free radical atom transfer reactions with aryl acetylenes to generate quaternary substituted pyridoindolones.
- Published
- 2015
- Full Text
- View/download PDF
31. ChemInform Abstract: Synthesis of Substituted Tetrahydrofurans
- Author
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Jon D. Rainier
- Subjects
General Medicine - Published
- 2015
- Full Text
- View/download PDF
32. ChemInform Abstract: Reactivity of Vinyl Phosphonate Containing Diazoesters: Formation, Reactivity, and Utility
- Author
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Jon D. Rainier and Jin Wang
- Subjects
chemistry.chemical_compound ,chemistry ,Nucleophile ,Diazo ,Reactivity (chemistry) ,General Medicine ,Guanidine ,Enol ,Medicinal chemistry ,Phosphonate - Abstract
Diazo vinyl phosphonate (I) is regioselectively transformed in a rhodium-catalyzed reaction with nucleophiles such as alcohols, amines including guanidine and thiols in order to form enol ethers, enamines, and vinyl sulfides, respectively.
- Published
- 2015
- Full Text
- View/download PDF
33. 2-Thioindoles as Precursors to Spiro-Fused Indolines: Synthesis of (±)-Dehaloperophoramidine
- Author
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Amir Sabahi, Jon D. Rainier, and Alexei V. Novikov
- Subjects
Models, Molecular ,Indoles ,biology ,Molecular Structure ,Chemistry ,Stereochemistry ,Hydrocarbons, Halogenated ,Total synthesis ,Perophoramidine ,General Chemistry ,General Medicine ,Cleavage (embryo) ,Crystallography, X-Ray ,Chemical synthesis ,Heterocyclic Compounds, 4 or More Rings ,Catalysis ,Colon carcinoma ,Cyclization ,Intramolecular force ,Electrophile ,biology.protein ,Sulfhydryl Compounds ,Polymerase - Abstract
which contains vicinal quaternary centers, was established with the help of extensive 2DNMR experiments and was later validated by the total synthesis developed by Fuchs and Funk. Preliminary biological data indicated that perophoramidine is cytotoxic to HMT 116 colon carcinoma cells and is able to induce apoptosis by poly(adenosine-5’-diphosphateribose)polymerase (PARP) cleavage. Our interest in the synthetic chemistry of 2-thioindoles, combined with the novel structural features of perophoramidine and its preliminary biological data, induced us to initiate a program to target its synthesis. Described herein are our preliminary results in this area and the synthesis of ( )dehaloperophoramidine. We considered several synthetic routes to the perophoramidine skeleton, but ultimately settled upon the approach illustrated in Scheme 2. We envisioned that the intramolecular coupling between the 3-position of a 2-thioindole with a pendant electrophile would serve to generate one of the perophoramidine spiro-fused rings; the resulting thioimidate
- Published
- 2006
- Full Text
- View/download PDF
34. The Role of Asynchronous Bond Formation in the Diastereoselective Epoxidation of Cyclic Enol Ethers: A Density Functional Theory Study
- Author
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Jon D. Rainier, Anita M. Orendt, and S. W. Roberts
- Subjects
Models, Molecular ,chemistry.chemical_classification ,Cyclic compound ,Molecular Structure ,Stereochemistry ,Organic Chemistry ,Substitution (logic) ,Stereoisomerism ,Bond formation ,Enol ,chemistry.chemical_compound ,Models, Chemical ,chemistry ,Cyclization ,Ethers, Cyclic ,Computational chemistry ,Oxepins ,Enol ether ,Epoxy Compounds ,Thermodynamics ,Density functional theory ,Dimethyldioxirane ,Basis set ,Pyrans - Abstract
Density functional theory (DFT) (Becke3LYP functional and the D95** basis set) was used to study the influence of substitution on the dimethyldioxirane epoxidation reaction of six- and seven-membered cyclic enol ethers. In agreement with our previously reported experimental results, the calculations predict that substitution on the cyclic enol ether influences the level of diastereoselectivity. Apparent only from the calculations is that the degree of synchronicity in the transition state is important in the diastereoselectivity.
- Published
- 2006
- Full Text
- View/download PDF
35. Total Synthesis of Gambierol: Subunit Coupling and Completion
- Author
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Henry W. B. Johnson, Jon D. Rainier, and Utpal Majumder
- Subjects
chemistry.chemical_classification ,Thioketal ,Longest linear sequence ,Chemistry ,Stereochemistry ,Protein subunit ,Organic Chemistry ,Total synthesis ,Esters ,General Medicine ,General Chemistry ,Ring (chemistry) ,Metathesis ,Catalysis ,Ciguatoxins ,Coupling (electronics) ,chemistry.chemical_compound ,Cyclization ,Ethers, Cyclic ,Yield (chemistry) ,Enol ether ,Indicators and Reagents ,Polycyclic Compounds - Abstract
The preceding manuscript detailed our synthesis of the gambierol A-C and F-H ring precursors. Reported herein is a description of the coupling of the two precursors and the conversion of the coupled material into gambierol. Coupling of the subunits involved ester formation, enol ether RCM, and mixed thioketal formation and reduction. By employing this strategy we were able to bring highly advanced subunits into the coupling and, as a result, we were able to minimize the number of post-coupling transformations required to complete gambierol. At the completion of the synthesis, we generated 7.5 mg (1.5 % overall yield) of (-)-gambierol in 44 steps (longest linear sequence).
- Published
- 2006
- Full Text
- View/download PDF
36. Substitution and Remote Protecting Group Influence on the Oxidation/Addition of α-Substituted 1,2-Anhydroglycosides: A Novel Entry intoC-Ketosides
- Author
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S. W. Roberts and Jon D. Rainier
- Subjects
chemistry.chemical_classification ,Molecular Structure ,Stereochemistry ,Organic Chemistry ,Substitution (logic) ,Glycoside ,Biochemistry ,Chemical synthesis ,Catalysis ,chemistry ,Indicators and Reagents ,Organosilicon Compounds ,Glycosides ,Physical and Theoretical Chemistry ,Protecting group ,Oxidation-Reduction - Abstract
[reaction: see text] C-Ketosides are valuable intermediates in chemical synthesis and as glycoside mimics. This manuscript describes the efficient generation of these substrates from alpha-alkyl-substituted glycals and an oxidative, C-C bond-forming sequence where the choice of C(3) protecting group was critical.
- Published
- 2005
- Full Text
- View/download PDF
37. Tremorgenic Indole Alkaloids. The Total Synthesis of (−)-Penitrem D
- Author
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Haifeng Cui, Amos B. Smith, William H. Moser, Richard A. Hartz, Young Shin Cho, Haruaki Ishiyama, Noriaki Minakawa, Naoki Kanoh, and Jon D. Rainier
- Subjects
Indole test ,chemistry.chemical_classification ,Indole alkaloid ,Stereochemistry ,Longest linear sequence ,Penicillium ,Enantioselective synthesis ,Total synthesis ,General Chemistry ,Mycotoxins ,Biochemistry ,Catalysis ,Indole Alkaloids ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Polycyclic compound ,chemistry ,Stereoselectivity ,Diterpene - Abstract
A convergent, stereocontrolled total synthesis of the architecturally complex tremorgenic indole alkaloid (-)-penitrem D (4) has been achieved. Highlights of the synthesis include an efficient, asymmetric synthesis of the western hemisphere; the stereocontrolled assembly of the I-ring; discovery of a novel autoxidation to introduce the C(22) tertiary hydroxyl group, required for tremorgenic activity; union of fully elaborated eastern and western hemispheres, exploiting an indole synthetic protocol developed expressly for this purpose; and a late-stage, stereoselective construction of the A and F rings exploiting a Sc(OTf)(3-)promoted reaction cascade. The longest linear sequence leading to (-)-penitrem D (4) was 43 steps.
- Published
- 2003
- Full Text
- View/download PDF
38. Diastereoselective synthesis of quaternary substituted thioindolines from sulfur ylide intermediates
- Author
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Alexei V. Novikov, Amir Sabahi, Jon D. Rainier, and Abijah M. Nyong
- Subjects
chemistry.chemical_classification ,Organic Chemistry ,chemistry.chemical_element ,General Medicine ,Sulfur ,Catalysis ,Coupling reaction ,Inorganic Chemistry ,chemistry ,Ylide ,Polymer chemistry ,Organic chemistry ,Physical and Theoretical Chemistry ,Chirality (chemistry) - Abstract
We have examined the coupling reactions of 2-thioindoles with vinyl diazoacetates in the presence of Rh(II) catalysts. While attempted enantio- and/or diastereoselective couplings using chiral catalysts and/or chiral auxiliaries on the vinyl diazoacetate have been largely unsuccessful, substrates having resident chirality on fused thiopyrans gave thioindolines with moderate to high diastereoselectivities.
- Published
- 2003
- Full Text
- View/download PDF
39. Synthesis of an F−H Gambierol Subunit Using a C-Glycoside-Centered Strategy
- Author
-
Jason M. Cox, Utpal Majumder, and Jon D. Rainier
- Subjects
C glycosides ,chemistry.chemical_classification ,Stereochemistry ,Protein subunit ,Organic Chemistry ,Metathesis ,Biochemistry ,Ciguatoxins ,chemistry ,Cyclization ,Ethers, Cyclic ,Dinoflagellida ,Enol ether ,Animals ,Indicators and Reagents ,Polycyclic Compounds ,Glycosides ,Physical and Theoretical Chemistry ,Protecting group ,Oxidation-Reduction - Abstract
[structure: see text] This manuscript describes our synthesis of the F-H subunit of gambierol. In addition to the synthesis of the tricycle, of note is an interesting protecting group influence on the generation of a C(23) C-glycoside as well as the use of ring-closing metathesis to generate a tetrasubstituted enol ether.
- Published
- 2003
- Full Text
- View/download PDF
40. Fluorescent kapakahines serve as non-toxic probes for live cell Golgi imaging
- Author
-
Letícia V. Costa-Lotufo, Jon D. Rainier, Danilo D. Rocha, Vinson R. Espejo, and James J. La Clair
- Subjects
Cell Survival ,Chemical biology ,Golgi Apparatus ,Biology ,Peptides, Cyclic ,General Biochemistry, Genetics and Molecular Biology ,law.invention ,symbols.namesake ,Confocal microscopy ,law ,Organelle ,Humans ,General Pharmacology, Toxicology and Pharmaceutics ,Fluorescent Dyes ,Depsipeptide ,Staining and Labeling ,General Medicine ,Golgi apparatus ,HCT116 Cells ,Subcellular localization ,Cell biology ,Staining ,SONDAS FLUORESCENTES ,Microscopy, Fluorescence ,symbols ,Molecular probe - Abstract
Aims There is an ongoing need for fluorescent probes that specifically-target select organelles within mammalian cells. This study describes the development of probes for the selective labeling of the Golgi apparatus and offers applications for live cell and fixed cell imaging. Main methods The kapakahines, characterized by a common C (3)- N (1′) dimeric tryptophan linkage, comprise a unique family of bioactive marine depsipeptide natural products. We describe the uptake and subcellular localization of fluorescently-labeled analogs of kapakahine E. Using confocal microscopy, we identify a rapid and selective localization within the Golgi apparatus. Comparison with commercial Golgi stains indicates a unique localization pattern, which differs from currently available materials, therein offering a new tool to monitor the Golgi in live cells without toxic side effects. Key findings This study identifies a fluorescent analog of kapakahine E that is rapidly uptaken in cells and localizes within the Golgi apparatus. Significance The advance of microscopic methods is reliant on the parallel discovery of next generation molecular probes. This study describes the advance of stable and viable probe for staining the Golgi apparatus.
- Published
- 2015
41. C-Glycosides to fused polycyclic ethers
- Author
-
Brett E. Howard, Shawn P. Allwein, Jason M. Cox, Jon D. Rainier, and Henry W. B. Johnson
- Subjects
Coupling (electronics) ,C glycosides ,Annulation ,Ring-closing metathesis ,Stereochemistry ,Chemistry ,Organic Chemistry ,Drug Discovery ,Biochemistry - Abstract
This manuscript describes the synthesis of fused polycyclic ethers from the coupling of C-glycoside forming reactions with ring closing metathesis and acid mediated annulation reactions.
- Published
- 2002
- Full Text
- View/download PDF
42. Vinyl Diazophosphonates as Precursors to Quaternary Substituted Indolines and Cyclopentenes
- Author
-
Jin Wang, Vyacheslav Boyarskikh, and Jon D. Rainier
- Subjects
chemistry.chemical_classification ,Indoles ,Vinyl Compounds ,Molecular Structure ,Sulfonium ,Organic Chemistry ,Organophosphonates ,food and beverages ,Cyclopentanes ,Biochemistry ,Medicinal chemistry ,Catalysis ,chemistry.chemical_compound ,chemistry ,Cyclization ,Ylide ,Intramolecular force ,Organometallic Compounds ,Combinatorial Chemistry Techniques ,Organic chemistry ,Physical and Theoretical Chemistry ,Azo Compounds - Abstract
Vinyl diazophosphonates can be stereoselectively synthesized and, depending upon their substitution pattern, undergo intramolecular C-H insertion reactions or sulfonium ylide rearrangements when exposed to Rh(2)(OAc)(4).
- Published
- 2011
- Full Text
- View/download PDF
43. [2+2+1] Cycloadditions of ynol ethers. The synthesis of iron complexes of 3-alkoxycyclopentadienones
- Author
-
Jason E. Imbriglio and Jon D. Rainier
- Subjects
chemistry.chemical_compound ,Chemistry ,Organic Chemistry ,Drug Discovery ,Organic chemistry ,Ynol ,Biochemistry ,Cycloaddition - Abstract
This Letter reports the synthesis of iron complexes of 3-oxocyclopentadienones from ynol ether–alkyne [2+2+1] cycloaddition reactions as well as the use of 3-alkoxycyclopentadienones in subsequent cycloaddition reactions.
- Published
- 2001
- Full Text
- View/download PDF
44. Anionic ring expansion reactions of oxabicyclo[4.2.1]heptenones. An efficient entry into the carbon framework of oxygenated cembranoids
- Author
-
Mahika Weeresakare, Jon D. Rainier, and Qing Xu
- Subjects
Elimination reaction ,Fragmentation (mass spectrometry) ,Eleutherobin ,Chemistry ,Organic Chemistry ,Drug Discovery ,Carbon skeleton ,Biochemistry ,Medicinal chemistry - Abstract
Oxabicyclo[2.2.1]heptenones undergo 2-carbon ring expansion reactions when subjected to anionic condensations and Michael acceptors. They also undergo condensation, fragmentation, and elimination reactions in their anionic couplings with aldehydes. As an outgrowth of this interesting chemistry, we have been able to access the carbon skeleton of oxygenated cembranoids by subjecting bis-activated ene-yne 39 to the enolate from oxabicyclo[2.2.1]heptenone 1 .
- Published
- 2001
- Full Text
- View/download PDF
45. C-Glycosides to Fused Polycyclic Ethers. An Efficient Entry into the A−D Ring System of Gambierol
- Author
-
Jason M. Cox and Jon D. Rainier
- Subjects
C glycosides ,Stereochemistry ,Chemistry ,Organic Chemistry ,Physical and Theoretical Chemistry ,Ring (chemistry) ,Biochemistry ,Combinatorial chemistry - Abstract
This Letter describes our use of C-glycosides to synthesize the A−D ring system of the marine ladder toxin gambierol in 20 steps.
- Published
- 2001
- Full Text
- View/download PDF
46. Cyclopropylazetoindolines as Precursors to C(3)-Quaternary-Substituted Indolines
- Author
-
Jon D. Rainier, Vinson R. Espejo, and Xi-Bo Li
- Subjects
Indoles ,Chemistry ,Carbon chemistry ,chemistry.chemical_element ,Stereoisomerism ,General Chemistry ,Biochemistry ,Combinatorial chemistry ,Carbon ,Catalysis ,Coupling reaction ,Substrate Specificity ,Colloid and Surface Chemistry ,Nucleophile ,Substrate specificity - Abstract
This manuscript describes the generation and use of a cyclopropylazetoindoline, a novel fused heterocycle, in coupling reactions with hetero- and carbon nucleophiles to give C(3)-quaternary-substituted pyrroloindolines.
- Published
- 2010
- Full Text
- View/download PDF
47. Tremorgenic Indole Alkaloids. Studies Directed toward the Assembly of the A, F, and I Rings of Penitrem D: Observation of an Unexpected Stereochemical Outcome
- Author
-
Naoki Kanoh, Amos B. Smith, Richard A. Hartz, Noriaki Minakawa, Jon D. Rainier, and F. R. Blase
- Subjects
Indole test ,Indoles ,Molecular Structure ,Stereochemistry ,Chemistry ,Organic Chemistry ,Stereoisomerism ,Model system ,Mycotoxins ,Ring (chemistry) ,Biochemistry ,Penitrem D ,Alkaloids ,Tremor ,Stereoselectivity ,Physical and Theoretical Chemistry - Abstract
[formula: see text] In this Letter we demonstrate the viability of a highly stereoselective tandem Mannich cyclization-grammine fragmentation/addition cascade, critical for assembly of the A and F rings of penitrem D. We also explored simultaneous execution of this tactic with concurrent construction of ring I. Reinvestigation of a model system provided an explanation for the unanticipated stereochemical outcome at C(28).
- Published
- 1999
- Full Text
- View/download PDF
48. Two-Directional Olefinic-Ester Ring-Closing Metathesis using Reduced Ti Alkylidenes. A Rapid Entry into Polycyclic Ether Skeletons
- Author
-
Yuan Zhang and Jon D. Rainier
- Subjects
Titanium ,Organic Chemistry ,Molecular Conformation ,chemistry.chemical_element ,Esters ,Stereoisomerism ,Ether ,Alkenes ,Biochemistry ,Article ,chemistry.chemical_compound ,Ring-closing metathesis ,chemistry ,Cyclization ,Reagent ,Organometallic Compounds ,Organic chemistry ,Polycyclic Compounds ,Physical and Theoretical Chemistry ,Ethers - Abstract
The use of a reduced titanium ethylidene reagent in an efficient two-directional approach to polycyclic ether skeletons is described.
- Published
- 2008
- Full Text
- View/download PDF
49. A highly efficient iterative approach to fused ether ring systems
- Author
-
Jon D. Rainier and Shawn P. Allwein
- Subjects
chemistry.chemical_classification ,Organic Chemistry ,Acetal ,Ether ,equipment and supplies ,Ring (chemistry) ,complex mixtures ,Biochemistry ,Combinatorial chemistry ,chemistry.chemical_compound ,chemistry ,Acid catalyzed ,Drug Discovery ,Alkoxide ,Enol ether - Abstract
An iterative synthesis of fused ether ring systems has been developed. This strategy couples a cyclic enol ether oxidation and carbon-carbon bond forming reaction in one flask with an acid catalyzed cyclic acetal formation and alkoxide elimination in another flask. The result is a general and highly efficient two flask synthesis of fused ethers as are present in a wide variety of bioactive natural products.
- Published
- 1998
- Full Text
- View/download PDF
50. ChemInform Abstract: The Synthesis of Indoline and Benzofuran Scaffolds Using a Suzuki-Miyaura Coupling/Oxidative Cyclization Strategy
- Author
-
Jon D. Rainier and Somnath Jana
- Subjects
Coupling (electronics) ,chemistry.chemical_compound ,Oxidative cyclization ,chemistry ,Indoline ,General Medicine ,Benzofuran ,Photochemistry ,Combinatorial chemistry ,Coupling reaction - Abstract
The generation of indolines and benzofurans from the combination of Suzuki–Miyaura coupling reactions with oxidative cyclizations is described.
- Published
- 2014
- Full Text
- View/download PDF
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