151 results on '"Jones ND"'
Search Results
2. Review of congenital anomalies of ear, nose, and throat in a resource-challenged facility
- Author
-
Jones Ndubuisi Nwosu and Ethel Nkechi Chime
- Subjects
anomaly ,congenital ,ear ,nose ,review ,throat ,Medicine - Abstract
Introduction: The complex pattern of development of the branchial arches predisposes to a myriad of congenital anomalies of the head-and-neck region. The ear, nose and throat (ENT) are by no means spared. The birth of a child with congenital anomaly elicits emotion, anxiety, the feeling of guilt, and dejection in the parents, especially the mother. They are worried and anxiously seek for the explanation which the attending doctor who is ill-equipped to venture into it. The etiological factors are many and vary. ENT anomalies are often associated with malformations of other organs and systems and should be searched for and detected. Any treatment offered should aim at restoring normal or near-normal appearance and function and allay the fears and apprehensions of the parents. Aim: The aim of the study was to review and document the incidence, variety, and presentation of ENT congenital anomalies seen and treated in the Otolaryngology Department of our institution and formulate a baseline for the future. Materials and Methods: It was a retrospective review of ENT anomalies handled in our hospital from January 2015 to December 2019. The case notes of the eligible cases were retrieved and the relevant data were extracted. The data collected were analysed with descriptive statistics and presented in tables and prose as deemed fit. Ethical Consideration: The study protocol was reviewed and approved by the hospital records department. Results: Forty-six cases were studied, 24 males and 22 females. Their ages ranged from 0.019 years (one week) to 55 years, average of 7.84 ± 10.38, 95% confidence interval of 4.75682–10.92318. There was no significant difference in the ages of the males and females P = 0.8809, t = 0.1507, dt = 44. Fourteen different malformations were detected most common of which was deafness 15 (32.61%), followed by thyroglossal cyst 7 (15.22%) with 5 different anomalies coming last with 2.17% each. Conclusion: ENT malformations are common in our locality. Adequate history and examination with appropriate investigations will help get the diagnosis and associated conditions. Multi-disciplinary approach to management will offer a better outcome. Parents and caregivers need to be properly counselled.
- Published
- 2023
- Full Text
- View/download PDF
3. Application of a Desktop Computer to Configure a Laser Surface Inspection Gauge for Pre-painted Steel
- Author
-
Conference on Computers and Engineering (1983 : Sydney, N.S.W.) and Jones, ND
- Published
- 1983
4. Development of a Dual Process Control Computer System and its Application for Paint Line Automation
- Author
-
Conference on Control Engineering (2nd : 1982 : Newcastle, N.S.W.), Ahmed, A, and Jones, ND
- Published
- 1982
5. Visualization of the in vivo generation of donor antigen-specific effector CD8+ T cells during mouse cardiac allograft rejection: in vivo effector CD8+ T cell generation during allograft rejection
- Author
-
Gilot, BJ, Hara, M, Jones, ND, van Maurik, A, Niimi, M, Hadjianastassiou, V, Morris, PJ, and Wood, KJ
- Subjects
surgical procedures, operative ,chemical and pharmacologic phenomena - Abstract
BACKGROUND: An adoptive transfer system was used to study the fate of alloreactive CD8+ H-2Kb-specific TCR transgenic (DES+) T cells in vivo after transplantation. METHODS: A trace population of 2.0x10(6) CD8+DES+ T cells were adoptively transferred into syngeneic CBA.Ca (H-2k) mice 24 hr before transplantation of an H-2Kb+ or H-2Kb- cardiac allograft. RESULTS: H-2Kb specific T cells proliferated and produced interleukin-2 and interferon-gamma in response to H-2Kb+, but not H-2Kb- cardiac allografts. CD8+DES+ T cells that infiltrated the H-2Kb+ cardiac allografts developed a distinct cell surface and cytokine phenotype compared with the CD8+DES+ T cells that remained in the periphery. H-2Kb-specific graft infiltrating T cells (a) underwent a larger number of cell divisions (> =3), (b) increased in size, (c) up-regulated CD69, and (d) down-regulated CD62L. CONCLUSIONS: These results demonstrate that alloantigen-specific T cells can be monitored in vivo during the immune response to an allograft and that the fate of CD8+ T cells specific for the allogeneic class I molecules expressed by the graft is different between cells in the periphery and those that infiltrate the graft.
- Published
- 2016
- Full Text
- View/download PDF
6. Immunologic unresponsiveness to alloantigen in vivo: a role for regulatory T cells
- Author
-
Wood, KJ, Bushell, A, and Jones, ND
- Subjects
surgical procedures, operative ,hemic and immune systems ,chemical and pharmacologic phenomena - Abstract
Exposure to alloantigen in vivo or in vitro induces alloantigen reactive regulatory T cells that can control transplant rejection. The mechanisms that underpin the activity of alloantigen reactive regulatory T cells in vivo are common with those of regulatory T cells that prevent autoimmunity. The identification and characterization of regulatory T cells that control rejection and contribute to the induction of immunologic unresponsiveness to alloantigens in vivo has opened up exciting opportunities for new therapies in transplantation. Findings from laboratory studies are informing the design of clinical protocols using regulatory T cells as a cellular therapy.
- Published
- 2016
- Full Text
- View/download PDF
7. FUNCTIONAL ANALYSES OF THE PERIPHERAL BLOOD MONONUCLEAR CELLS IN LIVING RELATED LONG TERM RENAL TRANSPLANT RECIPIENTS
- Author
-
Ahmed, AKL, Jones, ND, Bakr, MA, Ghoniem, MA, Wood, KJ, and El Shehawy, M
- Published
- 2016
8. Impact of both donor and recipient strains on cardiac allograft survival after blockade of the CD40-CD154 costimulatory pathway
- Author
-
van Maurik, A, Wood, KJ, and Jones, ND
- Subjects
surgical procedures, operative ,hemic and immune systems ,chemical and pharmacologic phenomena - Abstract
BACKGROUND: The effectiveness of anti-CD154 monoclonal antibodies in prolonging the survival of mouse allografts is dependent on the strain combination. In this report, we examined the impact of the donor and the recipient strains on the success of CD40-CD154 blockade. MATERIALS AND METHODS: Cardiac allograft survival was monitored in different donor/recipient strain combinations. Morphometric analyses on the allograft coronary arteries allowed quantification of vessel intimal thickening. RESULTS: Prolonged cardiac allograft survival after the administration of an anti-CD154 monoclonal antibody was found to be dependent on the donor and the recipient strains. The influence of the donor and the recipient strains lay in the ability of CD8 T cells to cause graft rejection despite CD40-CD154 blockade. Elimination of CD8 T cells before transplantation resulted in similar graft prolongation irrespective of the genotype of the donor or the recipient strain. CONCLUSION: These data show that both donor and recipient strains contribute to CD40-CD154-independent CD8 T-cell-mediated rejection.
- Published
- 2016
9. Query-Driven Program Testing
- Author
-
Holzer, A, Schallhart, C, Tautschnig, M, Veith, H, Jones, ND, and Müller-Olm, M
- Abstract
We present a new approach to program testing which enables the programmer to specify test suites in terms of a versatile query language. Our query language subsumes standard coverage criteria ranging from simple basic block coverage all the way to predicate complete coverage and multiple condition coverage, but also facilitates on-the-fly requests for test suites specific to the code structure, to external requirements, or to ad hoc needs arising in program understanding/exploration. The query language is supported by a model checking backend which employs the CBMC framework. Our main algorithmic contribution is a method called iterative constraint strengthening which enables us to solve a query for an arbitrary coverage criterion by a single call to the model checker and a novel form of incremental SAT solving: Whenever the SAT solver finds a solution, our algorithm compares this solution against the coverage criterion, and strengthens the clause database with additional clauses which exclude redundant new solutions. We demonstrate the scalability of our approach and its ability to compute compact test suites with experiments involving device drivers, automotive controllers, and open source projects. © 2009 Springer Berlin Heidelberg.
- Published
- 2009
10. Religious orientation and attitude toward money: relationships with narcissism and the influence of gender.
- Author
-
Watson PJ, Jones ND, and Morris RJ
- Abstract
When combined with Lasch's (1979, 1984) speculations about the narcissism of consumerist society, Sorokin's (1992) analysis of ideational freedom suggests that the Intrinsic Religious Orientation Scale should predict a reduced desire for money and lower narcissism with opposite relationships expected for the Extrinsic Scale. Confirmation of these hypotheses appeared in a sample of 418 undergraduates who responded to the Religious Orientation (Allport and Ross, 1967), Narcissism (Margolis and Thomas, 1980), and Money Attitude (Yamauchi and Templer, 1982) Scales. Also as expected, narcissism was associated with an expanded desire for money. Gender proved to be a noteworthy variable as well, with males, for example, being more narcissistic and less intrinsically religious. Males also expressed higher levels of the especially narcissistic Power-Prestige attitudes about money. These findings most generally indicated that Sorokin's interpretation of freedom might supply useful guidance in future psychology of religion research. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
11. Lymphoproliferative Diseases of Fowl: High LDH Levels Associated with Lymphoblastic Leukemia (JM-V)
- Author
-
Sevoian M, Jones Nd, Kenyon Aj, and Helmboldt Cf
- Subjects
chemistry.chemical_classification ,Rous sarcoma virus ,Glucose-6-phosphate isomerase ,General Immunology and Microbiology ,biology ,Fowl ,biology.organism_classification ,medicine.disease ,Molecular biology ,Enzyme assay ,Transaminase ,Leukemia ,chemistry.chemical_compound ,Enzyme ,Food Animals ,chemistry ,Lactate dehydrogenase ,medicine ,biology.protein ,Animal Science and Zoology - Abstract
Over a decade ago Wroblewski and co-workers published their first papers on glutamate-oxaloacetate transaminase (4) and lactate dehydrogenase (LDH) (13) and brought the potential of these enzyme assays to general notice. Since then, in the study of leukemia and generalized malignant diseases, an elevated serum LDH and phosphoglucose isomerase are often found as well as elevated levels of other enzymes such as those of the pentose shunt (1). An attempt to use elevated LDH levels as a means of screening chickens for clinical leukosis has been reported (12). However, in another study (3) where LDH levels were determined in leukosisfree chickens experimentally infected with a strain of Rous sarcoma virus, it was found that LDH increased only in birds with tumors and that the time required for this increase was greater than that
- Published
- 1969
- Full Text
- View/download PDF
12. Lymphoproliferative Diseases of Fowl: Immunologic Factors Associated with Passage of a Lymphoblastic Leukemia (JM-V)
- Author
-
Kenyon Aj, Helmboldt Cf, Jones Nd, Sevoian M, and Horwitz M
- Subjects
General Immunology and Microbiology ,biology ,Immunologic Factors ,business.industry ,Fowl ,Lymphoblastic Leukemia ,Disease agent ,biology.organism_classification ,Virology ,Food Animals ,Immunization ,hemic and lymphatic diseases ,Immunology ,biology.protein ,Medicine ,Animal Science and Zoology ,Antibody ,business - Abstract
SUMMARY Experiments performed with the JM-V lymphoblastic leukemia agent developed by rapid passage of Marek's disease agent (JM) revealed that convalescent birds developed neutralizing antibodies which were demonstrable by passive immunization. Adsorption studies indicated immunologic cross-reactivity between JM-V- and JM-infective blood.
- Published
- 1969
- Full Text
- View/download PDF
13. Exploiting the distinctive properties of the bacterial and human MutS homolog sliding clamps on mismatched DNA.
- Author
-
Britton BM, London JA, Martin-Lopez J, Jones ND, Liu J, Lee JB, and Fishel R
- Subjects
- Humans, Adenosine Triphosphate metabolism, Base Pair Mismatch, DNA metabolism, DNA Mismatch Repair, MutS Homolog 2 Protein genetics, MutS Homolog 2 Protein metabolism, MutS Proteins genetics, Protein Binding, Escherichia coli Proteins metabolism, MutS DNA Mismatch-Binding Protein genetics, MutS DNA Mismatch-Binding Protein metabolism
- Abstract
MutS homologs (MSHs) are highly conserved core components of DNA mismatch repair. Mismatch recognition provokes ATP-binding by MSH proteins that drives a conformational transition from a short-lived lesion-searching clamp to an extremely stable sliding clamp on the DNA. Here, we have expanded on previous bulk biochemical studies to examine the stability, lifetime, and kinetics of bacterial and human MSH sliding clamps on mismatched DNA using surface plasmon resonance and single-molecule analysis of fluorescently labeled proteins. We found that ATP-bound MSH complexes bound to blocked-end or very long mismatched DNAs were extremely stable over a range of ionic conditions. These observations underpinned the development of a high-throughput Förster resonance energy transfer system that specifically detects the formation of MSH sliding clamps on mismatched DNA. The Förster resonance energy transfer system is capable of distinguishing between HsMSH2-HsMSH3 and HsMSH2-HsMSH6 and appears suitable for chemical inhibitor screens. Taken together, our results provide additional insight into MSH sliding clamps as well as methods to distinguish their functions in mismatch repair., Competing Interests: Conflict of interest The authors declare no conflicts of interest with the contents of this article., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
14. Meiotic drive in chronic lymphocytic leukemia compared with other malignant blood disorders.
- Author
-
Jønsson V, Awan H, Jones ND, Johannesen TB, Thøgersen K, Steig BÁ, Andorsdottir G, and Tjønnfjord GE
- Subjects
- Child, Fathers, Humans, Male, Pedigree, Leukemia genetics, Leukemia, Lymphocytic, Chronic, B-Cell pathology, Lymphoma, Follicular pathology, Multiple Myeloma
- Abstract
The heredity of the malignant blood disorders, leukemias, lymphomas and myeloma, has so far been largely unknown. The present study comprises genealogical investigations of one hundred and twelve Scandinavian families with unrelated parents and two or more cases of malignant blood disease. For comparison, one large family with related family members and three hundred and forty-one cases of malignant blood disease from the Faroese population was included. The inheritance is non-Mendelian, a combination of genomic parental imprinting and feto-maternal microchimerism. There is significantly more segregation in maternal than in paternal lines, predominance of mother-daughter combinations in maternal lines, and father-son combinations in paternal lines. Chronic lymphocytic leukemia is the most frequent diagnosis in the family material, and chronic lymphocytic leukemia has a transgenerational segregation that is unique in that inheritance of susceptibility to chronic lymphocytic leukemia is predominant in males of paternal lines. Male offspring with chronic lymphocytic leukemia in paternal lines have a birth-order effect, which is manifest by the fact that there are significantly more male patients late in the sibling line. In addition, there is contravariation in chronic lymphocytic leukemia, i.e. lower occurrence than expected in relation to other diagnoses, interpreted in such a way that chronic lymphocytic leukemia remains isolated in the pedigree in relation to other diagnoses of malignant blood disease. Another non-Mendelian function appears in the form of anticipation, i.e. increased intensity of malignancy down through the generations and a lower age at onset of disease than otherwise seen in cases from the Cancer Registers, in acute lymphoblastic leukemia, for example. It is discussed that this non-Mendelian segregation seems to spread the susceptibility genes depending on the gender of the parents and not equally to all children in the sibling line, with some remaining unaffected by susceptibility i.e. "healthy and unaffected", due to a birth order effect. In addition, anticipation is regarded as a non-Mendelian mechanism that can amplify, «preserve» these vital susceptibility genes in the family. Perhaps this segregation also results in a sorting of the susceptibility, as the percentage of follicular lymphoma and diffuse large B-cell lymphoma is lower in the family material than in an unselected material. Although leukemias, lymphomas and myelomas are potentially fatal diseases, this non-Mendelian distribution and amplification hardly play any quantitative role in the survival of Homo sapiens, because these diseases mostly occur after fertile age., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
15. The role of titles in enhancing data visualization.
- Author
-
Wanzer DL, Azzam T, Jones ND, and Skousen D
- Subjects
- Humans, Program Evaluation, Data Visualization
- Abstract
Many in the data visualization and evaluation communities recommend conveying the message or takeaway of the visualization in the visualization's title. This study tested that recommendation by examining how informative or generic titles impact a visualization's visual efficiency, aesthetics, credibility, and the perceived effectiveness of the hypothetical program examined. Furthermore, this study tested how simple or complex graphs, and positive, negative, or mixed results (i.e., valence of the results) affected outcomes. Participants were randomly assigned to one of 12 conditions, representing a 2 (graph: simple or complex) x 2 (title: generic or informative) x 3 (valence: positive, negative, mixed) between-subjects study. The results indicated that informative titles required less mental effort and were viewed as more aesthetically pleasing, but otherwise did not lead to greater accuracy, credibility, or perceived effectiveness. Furthermore, titles did not interact with graph type or the valence of the findings. While the results suggest it is worthwhile to consider adding an informative title to data visualizations as they can reduce mental effort for the viewer, the intended goal of the visualization should be taken into consideration. Considering the goal of the visualization can be a deciding factor of the type of graph and title that will best serve its intended purposes. Overall, this suggests that data visualization recommendations that impact evaluation reporting practices should be scrutinized more closely through research., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
16. Danielson's Framework for Teaching: Convergence and Divergence With Conceptions of Effectiveness in Special Education.
- Author
-
Morris-Mathews H, Stark KR, Jones ND, Brownell MT, and Bell CA
- Subjects
- Humans, Students, Teaching, Education, Special, Learning Disabilities
- Abstract
Danielson's Framework for Teaching (FFT) is currently used in more than 20 states to inform teacher evaluation and professional learning. To investigate whether FFT promotes instruction that appropriately responds to the needs of students with learning disabilities, we conduct a systematic content analysis of the instructional approach emphasized in the FFT's Instructional Domain (Domain 3) of Danielson's FFT. We frame our study using cognitive load theory and research regarding effective instruction for students with disabilities. We end by discussing implications regarding the evaluation and development of effective teaching for students with learning disabilities.
- Published
- 2021
- Full Text
- View/download PDF
17. Retroviral prototype foamy virus intasome binding to a nucleosome target does not determine integration efficiency.
- Author
-
Kotlar RM, Jones ND, Senavirathne G, Gardner AM, Messer RK, Tan YY, Rabe AJ, Fishel R, and Yoder KE
- Subjects
- Catalytic Domain, Chromatin genetics, Chromatin metabolism, DNA, Viral genetics, DNA, Viral metabolism, Genome, Viral, Humans, Integrases genetics, Protein Multimerization, Spumavirus genetics, Spumavirus growth & development, Viral Proteins chemistry, Viral Proteins genetics, Histones metabolism, Integrases metabolism, Nucleosomes metabolism, Spumavirus metabolism, Viral Proteins metabolism, Virus Integration
- Abstract
Retroviral integrases must navigate host DNA packaged as chromatin during integration of the viral genome. Prototype foamy virus (PFV) integrase (IN) forms a tetramer bound to two viral DNA (vDNA) ends in a complex termed an intasome. PFV IN consists of four domains: the amino terminal extension domain (NED), amino terminal domain (NTD), catalytic core domain (CCD), and carboxyl terminal domain (CTD). The domains of the two inner IN protomers have been visualized, as well as the CCDs of the two outer IN protomers. However, the roles of the amino and carboxyl terminal domains of the PFV intasome outer subunits during integration to a nucleosome target substrate are not clear. We used the well-characterized 601 nucleosome to assay integration activity as well as intasome binding. PFV intasome integration to 601 nucleosomes occurs in clusters at four independent sites. We find that the outer protomer NED and NTD domains have no significant effects on integration efficiency, site selection, or binding. The CTDs of the outer PFV intasome subunits dramatically affect nucleosome binding but have little effect on total integration efficiency. The outer PFV IN CTDs did significantly alter the integration efficiency at one site. Histone tails also significantly affect intasome binding, but have little impact on PFV integration efficiency or site selection. These results indicate that binding to nucleosomes does not correlate with integration efficiency and suggests most intasome-binding events are unproductive., Competing Interests: Conflict of interest The authors declare that they have no conflicts of interest with the contents of this article., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
18. Preservice Observation in Special Education: A Validation Study.
- Author
-
Pua DJ, Peyton DJ, Brownell MT, Contesse VA, and Jones ND
- Subjects
- Humans, Learning, Pilot Projects, Psychometrics, Education, Special, Students
- Abstract
Advancing teacher candidates' overall competence through use of valid teacher observation systems should be an essential element of teacher preparation. Yet, the field of special education has not provided observation protocols designed specifically for preservice teachers that are founded in theoretical perspectives and research on effective instruction for students with learning and other high-incidence disabilities (SWDs). To address this need, a group of researchers in special education teacher preparation and measurement developed the Preservice Observation Instrument for Special Education (POISE). The POISE is an observation system rooted in effective special education practices that support the growth of preservice teachers who will serve SWD across instructional settings. The purpose of this article is to report on the development and psychometric properties of the POISE. Specifically, we employed Kane's argument-based validity approach to frame each stage in the development process of the POISE. We conducted two phases of content validation activities, development activities, and a pilot study to assess the degree to which scores from POISE provided evidence for the scoring, generalizability, and extrapolation inferences. In the end, the POISE represents a promising observation instrument for the development of special education teacher candidates.
- Published
- 2021
- Full Text
- View/download PDF
19. Introduction to The Special Series: Can Direct Observation Systems Lead to Improvements in Teacher Practice and Student Outcomes?
- Author
-
Johnson ES, Reddy LA, and Jones ND
- Subjects
- Humans, Achievement, Students
- Published
- 2021
- Full Text
- View/download PDF
20. Mice Deficient in T-bet Form Inducible NO Synthase-Positive Granulomas That Fail to Constrain Salmonella .
- Author
-
Perez-Toledo M, Beristain-Covarrubias N, Channell WM, Hitchcock JR, Cook CN, Coughlan RE, Bobat S, Jones ND, Nakamura K, Ross EA, Rossiter AE, Rooke J, Garcia-Gimenez A, Jossi S, Persaud RR, Marcial-Juarez E, Flores-Langarica A, Henderson IR, Withers DR, Watson SP, and Cunningham AF
- Subjects
- Animals, Granuloma genetics, Interferon-gamma genetics, Interferon-gamma immunology, Interleukin-17 genetics, Interleukin-17 immunology, Mice, Mice, Knockout, Nitric Oxide Synthase Type II genetics, Salmonella Infections genetics, Salmonella typhimurium genetics, T-Box Domain Proteins immunology, T-bet Transcription Factor, Granuloma immunology, Nitric Oxide Synthase Type II immunology, Salmonella Infections immunology, Salmonella typhimurium immunology, T-Box Domain Proteins deficiency, Th1 Cells immunology
- Abstract
Clearance of intracellular infections caused by Salmonella Typhimurium (STm) requires IFN-γ and the Th1-associated transcription factor T-bet. Nevertheless, whereas IFN-γ
-/- mice succumb rapidly to STm infections, T-bet-/- mice do not. In this study, we assess the anatomy of immune responses and the relationship with bacterial localization in the spleens and livers of STm-infected IFN-γ-/- and T-bet-/- mice. In IFN-γ-/- mice, there is deficient granuloma formation and inducible NO synthase (iNOS) induction, increased dissemination of bacteria throughout the organs, and rapid death. The provision of a source of IFN-γ reverses this, coincident with subsequent granuloma formation and substantially extends survival when compared with mice deficient in all sources of IFN-γ. T-bet-/- mice induce significant levels of IFN-γ- after challenge. Moreover, T-bet-/- mice have augmented IL-17 and neutrophil numbers, and neutralizing IL-17 reduces the neutrophilia but does not affect numbers of bacteria detected. Surprisingly, T-bet-/- mice exhibit surprisingly wild-type-like immune cell organization postinfection, including extensive iNOS+ granuloma formation. In wild-type mice, most bacteria are within iNOS+ granulomas, but in T-bet-/- mice, most bacteria are outside these sites. Therefore, Th1 cells act to restrict bacteria within IFN-γ-dependent iNOS+ granulomas and prevent dissemination., (Copyright © 2020 The Authors.)- Published
- 2020
- Full Text
- View/download PDF
21. Diversity in medullary thymic epithelial cells controls the activity and availability of iNKT cells.
- Author
-
Lucas B, White AJ, Cosway EJ, Parnell SM, James KD, Jones ND, Ohigashi I, Takahama Y, Jenkinson WE, and Anderson G
- Subjects
- Animals, Antigens, CD1d genetics, Antigens, CD1d immunology, Antigens, CD1d metabolism, Cell Differentiation genetics, Cell Lineage genetics, Cell Lineage immunology, Cell Proliferation genetics, Dendritic Cells immunology, Dendritic Cells metabolism, Epithelial Cells cytology, Epithelial Cells metabolism, Gene Expression Regulation immunology, Lymphocyte Activation immunology, Lymphotoxin beta Receptor genetics, Lymphotoxin beta Receptor immunology, Lymphotoxin beta Receptor metabolism, Mice, Inbred BALB C, Mice, Inbred C57BL, Mice, Knockout, Natural Killer T-Cells cytology, Natural Killer T-Cells metabolism, Signal Transduction genetics, Signal Transduction immunology, T-Lymphocytes cytology, T-Lymphocytes immunology, T-Lymphocytes metabolism, Thymocytes cytology, Thymocytes metabolism, Thymus Gland cytology, Thymus Gland metabolism, Cell Differentiation immunology, Epithelial Cells immunology, Natural Killer T-Cells immunology, Thymocytes immunology, Thymus Gland immunology
- Abstract
The thymus supports multiple αβ T cell lineages that are functionally distinct, but mechanisms that control this multifaceted development are poorly understood. Here we examine medullary thymic epithelial cell (mTEC) heterogeneity and its influence on CD1d-restricted iNKT cells. We find three distinct mTEC
low subsets distinguished by surface, intracellular and secreted molecules, and identify LTβR as a cell-autonomous controller of their development. Importantly, this mTEC heterogeneity enables the thymus to differentially control iNKT sublineages possessing distinct effector properties. mTEC expression of LTβR is essential for the development thymic tuft cells which regulate NKT2 via IL-25, while LTβR controls CD104+ CCL21+ mTEClow that are capable of IL-15-transpresentation for regulating NKT1 and NKT17. Finally, mTECs regulate both iNKT-mediated activation of thymic dendritic cells, and iNKT availability in extrathymic sites. In conclusion, mTEC specialization controls intrathymic iNKT cell development and function, and determines iNKT pool size in peripheral tissues.- Published
- 2020
- Full Text
- View/download PDF
22. Nucleosome DNA unwrapping does not affect prototype foamy virus integration efficiency or site selection.
- Author
-
Mackler RM, Jones ND, Gardner AM, Lopez MA Jr, Howard CJ, Fishel R, and Yoder KE
- Subjects
- Cell-Free System chemistry, Cell-Free System metabolism, DNA, Viral chemistry, Histones chemistry, Histones metabolism, Humans, Nucleosomes chemistry, Spumavirus chemistry, DNA, Viral metabolism, Genome, Viral, Nucleosomes metabolism, Spumavirus metabolism, Virus Integration physiology
- Abstract
Eukaryotic DNA binding proteins must access genomic DNA that is packaged into chromatin in vivo. During a productive infection, retroviral integrases (IN) must similarly interact with chromatin to integrate the viral cDNA genome. Here we examine the role of nucleosome DNA unwrapping in the retroviral integrase search for a target site. These studies utilized PFV intasomes that are comprised of a tetramer of PFV IN with two oligomers mimicking the viral cDNA ends. Modified recombinant human histones were used to generate nucleosomes with increased unwrapping rates at different DNA regions. These modifications included the acetylmimetic H3(K56Q) and the chemically engineered H4(K77ac, K79ac). While transcription factors and DNA damage sensors may search nucleosome bound DNA during transient unwrapping, PFV intasome mediated integration appears to be unaffected by increased nucleosome unwrapping. These studies suggest PFV intasomes do not utilize nucleosome unwrapping to search nucleosome targets., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
- Full Text
- View/download PDF
23. Inheritance of Susceptibility to Malignant Blood Disorders.
- Author
-
Jønsson V, Awan H, Jones ND, Johannesen TB, Steig BÁ, Andosdottir G, and Tjønnfjord GE
- Subjects
- Aged, Consanguinity, Denmark epidemiology, Family, Female, Gene Frequency, Humans, Islands epidemiology, Male, Middle Aged, Norway epidemiology, Pedigree, Registries, Genetic Predisposition to Disease, Hematologic Neoplasms epidemiology, Hematologic Neoplasms genetics, Heredity
- Abstract
Malignant blood disorders depend on heritable susceptibility genes and occur in familial aggregations. We suggest a model of transgenerational segregation of the susceptibility genes based on the study of malignant blood disorders in Norwegian and Danish families with unrelated parents, and in the inbred Faroese population with related parents. This model, consisting of parental genomic imprinting and mother-son microchimerism, can explain the male predominance in most of the diseases, the predominance of affected parent-offspring when parents are not related, and the different modes of segregation in males and females. The model displays a specific pattern in the distribution of affected relatives for each diagnosis, viz. a characteristic distribution in the pedigrees of family members with malignant blood disorder related to the proband. Three such patterns, each reflecting a specific transgenerational passage, were identified: (1) alterations in the number of affected relatives in paternal lines alone, e.g. in patterns for probands with multiple myeloma; (2) alterations in the number of affected relatives in both paternal and maternal lines for probands with chronic lymphocytic leukemia; and (3) no alterations in the numbers of male and female affected relatives in the parental lines, e.g. for probands with some types of malignant lymphoma.
- Published
- 2019
- Full Text
- View/download PDF
24. Prototype foamy virus intasome aggregation is mediated by outer protein domains and prevented by protocatechuic acid.
- Author
-
Jones ND, Mackler RM, Lopez MA Jr, Baltierra-Jasso LE, Altman MP, Senavirathne G, and Yoder KE
- Subjects
- Buffers, Integrases metabolism, Osmolar Concentration, Protein Multimerization drug effects, Viral Proteins metabolism, Hydroxybenzoates pharmacology, Integrases chemistry, Protein Aggregates drug effects, Protein Domains physiology, Spumavirus enzymology, Viral Proteins chemistry
- Abstract
The integrase (IN) enzyme of retrovirus prototype foamy virus (PFV) consists of four domains: amino terminal extension (NED), amino terminus (NTD), catalytic core (CCD), and carboxyl terminus domains (CTD). A tetramer of PFV IN with two viral DNA ends forms the functional intasome. Two inner monomers are catalytically active while the CCDs of the two outer monomers appear to play only structural roles. The NED, NTD, and CTD of the outer monomers are disordered in intasome structures. Truncation mutants reveal that integration to a supercoiled plasmid increases without the outer monomer CTDs present. Deletion of the outer CTDs enhances the lifetime of the intasome compared to full length (FL) IN or deletion of the outer monomer NTDs. High ionic strength buffer or several additives, particularly protocatechuic acid (PCA), enhance the integration of FL intasomes by preventing aggregation. These data confirm previous studies suggesting the disordered outer domains of PFV intasomes are not required for intasome assembly or integration. Instead, the outer CTDs contribute to aggregation of PFV intasomes which may be inhibited by high ionic strength buffer or the small molecule PCA.
- Published
- 2019
- Full Text
- View/download PDF
25. Therapeutic implications of NK cell regulation of allogeneic CD8 T cell-mediated immune responses stimulated through the direct pathway of antigen presentation in transplantation.
- Author
-
Rodriguez-Barbosa JI, Ferreras MC, Buhler L, Jones ND, Schneider P, Perez-Simon JA, and Del Rio ML
- Subjects
- Animals, Antigen Presentation, Cells, Cultured, Cytotoxicity, Immunologic, Histocompatibility Antigens Class I genetics, Histocompatibility Antigens Class I immunology, Humans, Isoantigens immunology, Lymphocyte Depletion, Mice, Mice, Inbred C57BL, Mutation genetics, CD8-Positive T-Lymphocytes immunology, Graft Rejection immunology, Killer Cells, Natural immunology, Skin Transplantation
- Abstract
Natural killer (NK) cells are a population of innate type I lymphoid cells essential for early anti-viral responses and are known to modulate the course of humoral and cellular-mediated T cell responses. We assessed the role of NK cells in allogeneic CD8 T cell-mediated responses in an immunocompetent mouse model across an MHC class I histocompatibility barrier to determine its impact in therapeutic clinical interventions with polyclonal or monoclonal antibodies (mAbs) targeting lymphoid cells in transplantation. The administration of an NK cell depleting antibody to either CD8 T cell replete or CD8 T cell-depleted naïve C57BL/6 immunocompetent mice accelerated graft rejection. This accelerated rejection response was associated with an in vivo increased cytotoxic activity of CD8 T cells against bm1 allogeneic hematopoietic cells and bm1 skin allografts. These findings show that NK cells were implicated in the control host anti-donor cytotoxic responses, likely by competing for common cell growth factors in both CD8 T cell replete and CD8 T cell-depleted mice, the latter reconstituting in response to lymphopenia. Our data calls for precaution in solid organ transplantation under tolerogenic protocols involving extensive depletion of lymphocytes. These pharmacological biologics with depleting properties over NK cells may accelerate graft rejection and promote aggressive CD8 T cell cytotoxic alloresponses refractory to current immunosuppression.
- Published
- 2018
- Full Text
- View/download PDF
26. Concurrent OX40 and CD30 Ligand Blockade Abrogates the CD4-Driven Autoimmunity Associated with CTLA4 and PD1 Blockade while Preserving Excellent Anti-CD8 Tumor Immunity.
- Author
-
Nawaf MG, Ulvmar MH, Withers DR, McConnell FM, Gaspal FM, Webb GJ, Jones ND, Yagita H, Allison JP, and Lane PJL
- Subjects
- Animals, CD30 Ligand immunology, CTLA-4 Antigen immunology, Forkhead Transcription Factors deficiency, Forkhead Transcription Factors genetics, Forkhead Transcription Factors metabolism, Immunotherapy, Ligands, Lymphocyte Activation, Mice, Mice, Knockout, Neoplasms therapy, Programmed Cell Death 1 Receptor immunology, Receptors, OX40 immunology, T-Lymphocytes, Regulatory immunology, Autoimmunity, CD30 Ligand antagonists & inhibitors, CD4-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes immunology, CTLA-4 Antigen antagonists & inhibitors, Neoplasms immunology, Programmed Cell Death 1 Receptor antagonists & inhibitors, Receptors, OX40 antagonists & inhibitors
- Abstract
Although strategies that block FOXP3-dependent regulatory T cell function (CTLA4 blockade) and the inhibitory receptor PD1 have shown great promise in promoting antitumor immune responses in humans, their widespread implementation for cancer immunotherapy has been hampered by significant off-target autoimmune side effects that can be lethal. Our work has shown that absence of OX40 and CD30 costimulatory signals prevents CD4 T cell-driven autoimmunity in Foxp3-deficient mice, suggesting a novel way to block these side effects. In this study, we show that excellent antitumor CD8 T cell responses can be achieved in Foxp3
KO mice deficient in OX40 and CD30 signals, particularly in the presence of concurrent PD1 blockade. Furthermore, excellent antitumor immune responses can also be achieved using combinations of Abs that block CTLA4, PD1, OX40, and CD30 ligands, without CD4 T cell-driven autoimmunity. By dissociating autoimmune side effects from anticancer immune responses, this potentially shifts this antitumor approach to patients with far less advanced disease., (Copyright © 2017 The Authors.)- Published
- 2017
- Full Text
- View/download PDF
27. Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integration.
- Author
-
Jones ND, Lopez MA Jr, Hanne J, Peake MB, Lee JB, Fishel R, and Yoder KE
- Subjects
- Animals, DNA chemistry, DNA metabolism, DNA, Single-Stranded chemistry, DNA, Single-Stranded genetics, DNA, Single-Stranded metabolism, Diffusion, Gene Expression, Humans, Integrases chemistry, Integrases metabolism, Single Molecule Imaging methods, Spumavirus metabolism, Terminal Repeat Sequences, Time-Lapse Imaging methods, Viral Proteins chemistry, Viral Proteins metabolism, DNA genetics, Integrases genetics, Spumavirus genetics, Viral Proteins genetics, Virus Integration
- Abstract
Retroviruses must integrate their linear viral cDNA into the host genome for a productive infection. Integration is catalysed by the retrovirus-encoded integrase (IN), which forms a tetramer or octamer complex with the viral cDNA long terminal repeat (LTR) ends termed an intasome. IN removes two 3'-nucleotides from both LTR ends and catalyses strand transfer of the recessed 3'-hydroxyls into the target DNA separated by 4-6 bp. Host DNA repair restores the resulting 5'-Flap and single-stranded DNA (ssDNA) gap. Here we have used multiple single molecule imaging tools to determine that the prototype foamy virus (PFV) retroviral intasome searches for an integration site by one-dimensional (1D) rotation-coupled diffusion along DNA. Once a target site is identified, the time between PFV strand transfer events is 470 ms. The majority of PFV intasome search events were non-productive. These observations identify new dynamic IN functions and suggest that target site-selection limits retroviral integration.
- Published
- 2016
- Full Text
- View/download PDF
28. Anger, frustration, boredom and the Department of Motor Vehicles: Can negative emotions impede organ donor registration?
- Author
-
Siegel JT, Tan CN, Rosenberg BD, Navarro MA, Thomson AL, Lyrintzis EA, Alvaro EM, and Jones ND
- Subjects
- Adolescent, Adult, Aged, Anger, Boredom, Female, Frustration, Humans, Male, Middle Aged, Tissue Donors statistics & numerical data, United States, Young Adult, Emotions, Government Agencies organization & administration, Intention, Registries statistics & numerical data, Tissue Donors psychology
- Abstract
Rationale: The IIFF Model (Information, Immediate and Complete Registration Mechanism, Focused Engagement, Favorable Activation) offers a checklist of considerations for interventions seeking to influence organ donor registration behavior. One aspect of the model, favorable activation, recommends considering the emotional and motivational state of a potential donor registrant. Given that most donor registrations occur at the Department of Motor Vehicles (DMV), we considered whether emotions experienced while at the DMV could influence registration rates., Objective: The current research effort investigated the emotions people experience while visiting the DMV, explored whether these emotions are associated with donor registration intentions, and experimentally assessed whether DMV experiences influence donor registration., Methods: Three studies were conducted through Amazon's Mechanical Turk. In Study 1, we randomly assigned participants to either recall a prior DMV experience or to a comparison condition. Emotions associated with the recalled experiences were the dependent variable. Study 2 assessed the correlations between nine different emotions and donor registration intentions. Study 3 randomly assigned participants to recall a prior frustrating DMV experience or to a comparison condition. Intention to register to donate was the dependent variable., Results: Study 1 found that recalling a prior DMV experience was associated with more negative and less positive emotions than the comparison condition. Study 2 found that increased levels of negative emotion could be problematic, as negative emotions were associated with decreased donor intentions. Study 3 found that recalling a frustrating DMV experience resulted in significantly lower intentions to register as an organ donor (vs. a control condition)., Conclusion: Although not all DMV experiences are negative, these data indicated a relationship between the DMV and negative emotions; an association between negative emotions and lower donor registration intentions; and, a causal relationship between negative DMV experiences and decreased registration intentions., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
29. Inflammation drives thrombosis after Salmonella infection via CLEC-2 on platelets.
- Author
-
Hitchcock JR, Cook CN, Bobat S, Ross EA, Flores-Langarica A, Lowe KL, Khan M, Dominguez-Medina CC, Lax S, Carvalho-Gaspar M, Hubscher S, Rainger GE, Cobbold M, Buckley CD, Mitchell TJ, Mitchell A, Jones ND, Van Rooijen N, Kirchhofer D, Henderson IR, Adams DH, Watson SP, and Cunningham AF
- Subjects
- Animals, Blood Platelets pathology, Interferon-gamma genetics, Interferon-gamma metabolism, Kupffer Cells metabolism, Kupffer Cells pathology, Lectins, C-Type genetics, Mice, Mice, Inbred BALB C, Mice, Knockout, Platelet Membrane Glycoproteins genetics, Platelet Membrane Glycoproteins metabolism, Salmonella Infections complications, Salmonella Infections genetics, Salmonella Infections pathology, Thrombosis etiology, Thrombosis genetics, Thrombosis pathology, Toll-Like Receptor 4 genetics, Toll-Like Receptor 4 metabolism, Blood Platelets metabolism, Lectins, C-Type metabolism, Salmonella Infections metabolism, Salmonella typhimurium metabolism, Thrombosis metabolism
- Abstract
Thrombosis is a common, life-threatening consequence of systemic infection; however, the underlying mechanisms that drive the formation of infection-associated thrombi are poorly understood. Here, using a mouse model of systemic Salmonella Typhimurium infection, we determined that inflammation in tissues triggers thrombosis within vessels via ligation of C-type lectin-like receptor-2 (CLEC-2) on platelets by podoplanin exposed to the vasculature following breaching of the vessel wall. During infection, mice developed thrombi that persisted for weeks within the liver. Bacteria triggered but did not maintain this process, as thrombosis peaked at times when bacteremia was absent and bacteria in tissues were reduced by more than 90% from their peak levels. Thrombus development was triggered by an innate, TLR4-dependent inflammatory cascade that was independent of classical glycoprotein VI-mediated (GPVI-mediated) platelet activation. After infection, IFN-γ release enhanced the number of podoplanin-expressing monocytes and Kupffer cells in the hepatic parenchyma and perivascular sites and absence of TLR4, IFN-γ, or depletion of monocytic-lineage cells or CLEC-2 on platelets markedly inhibited the process. Together, our data indicate that infection-driven thrombosis follows local inflammation and upregulation of podoplanin and platelet activation. The identification of this pathway offers potential therapeutic opportunities to control the devastating consequences of infection-driven thrombosis without increasing the risk of bleeding.
- Published
- 2015
- Full Text
- View/download PDF
30. Inflammation-induced formation of fat-associated lymphoid clusters.
- Author
-
Bénézech C, Luu NT, Walker JA, Kruglov AA, Loo Y, Nakamura K, Zhang Y, Nayar S, Jones LH, Flores-Langarica A, McIntosh A, Marshall J, Barone F, Besra G, Miles K, Allen JE, Gray M, Kollias G, Cunningham AF, Withers DR, Toellner KM, Jones ND, Veldhoen M, Nedospasov SA, McKenzie ANJ, and Caamaño JH
- Subjects
- Animals, B-Lymphocytes immunology, B-Lymphocytes metabolism, Chemokine CXCL13 genetics, Chemokine CXCL13 immunology, Chemokine CXCL13 metabolism, Flow Cytometry, Gene Expression immunology, Inflammation genetics, Inflammation metabolism, Intra-Abdominal Fat metabolism, Lymphocytes metabolism, Lymphoid Tissue cytology, Lymphoid Tissue metabolism, Mice, Inbred BALB C, Mice, Inbred C57BL, Mice, Knockout, Mice, Transgenic, Microscopy, Confocal, Myeloid Cells immunology, Myeloid Cells metabolism, Natural Killer T-Cells immunology, Natural Killer T-Cells metabolism, Receptors, Tumor Necrosis Factor genetics, Receptors, Tumor Necrosis Factor immunology, Receptors, Tumor Necrosis Factor metabolism, Reverse Transcriptase Polymerase Chain Reaction, Stromal Cells immunology, Stromal Cells metabolism, Tumor Necrosis Factor-alpha genetics, Tumor Necrosis Factor-alpha immunology, Tumor Necrosis Factor-alpha metabolism, Inflammation immunology, Intra-Abdominal Fat immunology, Lymphocytes immunology, Lymphoid Tissue immunology
- Abstract
Fat-associated lymphoid clusters (FALCs) are a type of lymphoid tissue associated with visceral fat. Here we found that the distribution of FALCs was heterogeneous, with the pericardium containing large numbers of these clusters. FALCs contributed to the retention of B-1 cells in the peritoneal cavity through high expression of the chemokine CXCL13, and they supported B cell proliferation and germinal center differentiation during peritoneal immunological challenges. FALC formation was induced by inflammation, which triggered the recruitment of myeloid cells that expressed tumor-necrosis factor (TNF) necessary for signaling via the TNF receptors in stromal cells. Natural killer T cells (NKT cells) restricted by the antigen-presenting molecule CD1d were likewise required for the inducible formation of FALCs. Thus, FALCs supported and coordinated the activation of innate B cells and T cells during serosal immune responses.
- Published
- 2015
- Full Text
- View/download PDF
31. Innate lymphoid cells: the new kids on the block.
- Author
-
Withers DR, Mackley EC, and Jones ND
- Subjects
- Adaptation, Physiological, Allografts, Cross Reactions, Graft Rejection immunology, Humans, Immunity, Innate, Lymphocytes immunology
- Abstract
Purpose of Review: The purpose of this article is to review recent advances in our understanding of innate lymphoid cell function and to speculate on how these cells may become activated and influence the immune response to allogeneic tissues and cells following transplantation., Recent Findings: Innate lymphoid cells encompass several novel cell types whose wide-ranging roles in the immune system are only now being uncovered. Through cytokine production, cross-talk with both haematopoietic and nonhaematopoietic populations and antigen presentation to T cells, these cells have been shown to be key regulators in maintaining tissue integrity, as well as initiating and then sustaining immune responses., Summary: It is now clear that innate lymphoid cells markedly contribute to immune responses and tissue repair in a number of disease contexts. Although experimental and clinical data on the behaviour of these cells following transplantation are scant, it is highly likely that innate lymphoid cells will perform similar functions in the alloimmune response following transplantation and therefore may be potential therapeutic targets for manipulation to prevent allograft rejection.
- Published
- 2015
- Full Text
- View/download PDF
32. A different view on immunity: spatial mapping of human T cells over a lifetime.
- Author
-
Dempsey CM and Jones ND
- Subjects
- Humans, Immunologic Memory, T-Lymphocytes, Regulatory immunology, T-Lymphocytes immunology
- Published
- 2015
- Full Text
- View/download PDF
33. Resolving Salmonella infection reveals dynamic and persisting changes in murine bone marrow progenitor cell phenotype and function.
- Author
-
Ross EA, Flores-Langarica A, Bobat S, Coughlan RE, Marshall JL, Hitchcock JR, Cook CN, Carvalho-Gaspar MM, Mitchell AM, Clarke M, Garcia P, Cobbold M, Mitchell TJ, Henderson IR, Jones ND, Anderson G, Buckley CD, and Cunningham AF
- Subjects
- Animals, Antigens, Ly immunology, Bone Marrow Cells microbiology, Bone Marrow Cells pathology, CD4-Positive T-Lymphocytes immunology, CD4-Positive T-Lymphocytes microbiology, Homeostasis immunology, Interferon-gamma immunology, Membrane Proteins immunology, Mice, Mice, Inbred C57BL, Mice, Knockout, Phenotype, Salmonella immunology, Salmonella Infections, Animal pathology, Stem Cells microbiology, Stem Cells pathology, Bone Marrow Cells immunology, Salmonella Infections, Animal immunology, Stem Cells immunology
- Abstract
The generation of immune cells from BM precursors is a carefully regulated process. This is essential to limit the potential for oncogenesis and autoimmunity yet protect against infection. How infection modulates this is unclear. Salmonella can colonize systemic sites including the BM and spleen. This resolving infection has multiple IFN-γ-mediated acute and chronic effects on BM progenitors, and during the first week of infection IFN-γ is produced by myeloid, NK, NKT, CD4(+) T cells, and some lineage-negative cells. After infection, the phenotype of BM progenitors rapidly but reversibly alters, with a peak ∼ 30-fold increase in Sca-1(hi) progenitors and a corresponding loss of Sca-1(lo/int) subsets. Most strikingly, the capacity of donor Sca-1(hi) cells to reconstitute an irradiated host is reduced; the longer donor mice are exposed to infection, and Sca-1(hi) c-kit(int) cells have an increased potential to generate B1a-like cells. Thus, Salmonella can have a prolonged influence on BM progenitor functionality not directly related to bacterial persistence. These results reflect changes observed in leucopoiesis during aging and suggest that BM functionality can be modulated by life-long, periodic exposure to infection. Better understanding of this process could offer novel therapeutic opportunities to modulate BM functionality and promote healthy aging., (© 2014 The Authors. European Journal of Immunology published by Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2014
- Full Text
- View/download PDF
34. An essential role for medullary thymic epithelial cells during the intrathymic development of invariant NKT cells.
- Author
-
White AJ, Jenkinson WE, Cowan JE, Parnell SM, Bacon A, Jones ND, Jenkinson EJ, and Anderson G
- Subjects
- Animals, Antigens, CD1d genetics, Antigens, CD1d immunology, Antigens, CD1d metabolism, Cell Differentiation drug effects, Cell Differentiation genetics, Cellular Microenvironment drug effects, Cellular Microenvironment genetics, Epithelial Cells metabolism, Epithelial Cells transplantation, Flow Cytometry, Interleukin-15 administration & dosage, Interleukin-15 genetics, Interleukin-15 immunology, Mice, Inbred C57BL, Mice, Knockout, Natural Killer T-Cells metabolism, Nuclear Receptor Subfamily 1, Group F, Member 3 genetics, Nuclear Receptor Subfamily 1, Group F, Member 3 immunology, Nuclear Receptor Subfamily 1, Group F, Member 3 metabolism, RANK Ligand immunology, RANK Ligand metabolism, Receptor Activator of Nuclear Factor-kappa B immunology, Receptor Activator of Nuclear Factor-kappa B metabolism, Receptors, Interleukin-15 administration & dosage, Receptors, Interleukin-15 genetics, Receptors, Interleukin-15 immunology, Reverse Transcriptase Polymerase Chain Reaction, Thymocytes cytology, Thymocytes immunology, Thymocytes metabolism, Thymus Gland cytology, Thymus Gland immunology, Thymus Gland metabolism, Transcription Factor RelB genetics, Transcription Factor RelB immunology, Transcription Factor RelB metabolism, Cell Differentiation immunology, Cellular Microenvironment immunology, Epithelial Cells immunology, Natural Killer T-Cells immunology
- Abstract
In the thymus, interactions with both cortical and medullary microenvironments regulate the development of self-tolerant conventional CD4(+) and CD8(+) αβT cells expressing a wide range of αβTCR specificities. Additionally, the cortex is also required for the development of invariant NKT (iNKT) cells, a specialized subset of T cells that expresses a restricted αβTCR repertoire and is linked to the regulation of innate and adaptive immune responses. Although the role of the cortex in this process is to enable recognition of CD1d molecules expressed by CD4(+)CD8(+) thymocyte precursors, the requirements for additional thymus microenvironments during iNKT cell development are unknown. In this study, we reveal a role for medullary thymic epithelial cells (mTECs) during iNKT cell development in the mouse thymus. This requirement for mTECs correlates with their expression of genes required for IL-15 trans-presentation, and we show that soluble IL-15/IL-15Rα complexes restore iNKT cell development in the absence of mTECs. Furthermore, mTEC development is abnormal in iNKT cell-deficient mice, and early stages in iNKT cell development trigger receptor activator for NF-κB ligand-mediated mTEC development. Collectively, our findings demonstrate that intrathymic iNKT cell development requires stepwise interactions with both the cortex and the medulla, emphasizing the importance of thymus compartmentalization in the generation of both diverse and invariant αβT cells. Moreover, the identification of a novel requirement for iNKT cells in thymus medulla development further highlights the role of both innate and adaptive immune cells in thymus medulla formation.
- Published
- 2014
- Full Text
- View/download PDF
35. A diametric role for OX40 in the response of effector/memory CD4+ T cells and regulatory T cells to alloantigen.
- Author
-
Kinnear G, Wood KJ, Fallah-Arani F, and Jones ND
- Subjects
- Adaptive Immunity immunology, Animals, CD4-Positive T-Lymphocytes metabolism, Cell Movement, Cell Proliferation, Homeodomain Proteins genetics, Immune Tolerance, Immunologic Memory, Lymphocyte Activation immunology, Membrane Glycoproteins immunology, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Mice, Inbred CBA, Mice, Knockout, OX40 Ligand, Receptors, OX40 immunology, Signal Transduction immunology, Skin Transplantation immunology, Transplantation, Homologous immunology, Tumor Necrosis Factors immunology, CD4-Positive T-Lymphocytes immunology, Isoantigens immunology, Membrane Glycoproteins metabolism, Receptors, OX40 metabolism, T-Lymphocytes, Regulatory immunology, Tumor Necrosis Factors metabolism
- Abstract
OX40 is a member of the TNFR superfamily that has potent costimulatory properties. Although the impact of blockade of the OX40-OX40 ligand (OX40L) pathway has been well documented in models of autoimmune disease, its effect on the rejection of allografts is less well defined. In this article, we show that the alloantigen-mediated activation of naive and memory CD4(+) T cells results in the induction of OX40 expression and that blockade of OX40-OX40L interactions prevents skin allograft rejection mediated by either subset of T cells. Moreover, a blocking anti-OX40 had no effect on the activation and proliferation of T cells; rather, effector T cells failed to accumulate in peripheral lymph nodes and subsequently migrate to skin allografts. This was found to be the result of an enhanced degree of cell death among proliferating effector cells. In clear contrast, blockade of OX40-OX40L interactions at the time of exposure to alloantigen enhanced the ability of regulatory T cells to suppress T cell responses to alloantigen by supporting, rather than diminishing, regulatory T cell survival. These data show that OX40-OX40L signaling contributes to the evolution of the adaptive immune response to an allograft via the differential control of alloreactive effector and regulatory T cell survival. Moreover, these data serve to further highlight OX40 and OX40L as therapeutic targets to assist the induction of tolerance to allografts and self-Ags.
- Published
- 2013
- Full Text
- View/download PDF
36. Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion.
- Author
-
Korada SK, Johns TD, Smith CE, Jones ND, McCabe KA, and Bell CE
- Subjects
- Catalytic Domain, Crystallography, X-Ray, Magnesium chemistry, Models, Molecular, DNA, Single-Stranded chemistry, Escherichia coli Proteins chemistry, Exodeoxyribonucleases chemistry
- Abstract
Escherichia coli Exonuclease I (ExoI) digests single-stranded DNA (ssDNA) in the 3'-5' direction in a highly processive manner. The crystal structure of ExoI, determined previously in the absence of DNA, revealed a C-shaped molecule with three domains that form a central positively charged groove. The active site is at the bottom of the groove, while an extended loop, proposed to encircle the DNA, crosses over the groove. Here, we present crystal structures of ExoI in complex with four different ssDNA substrates. The structures all have the ssDNA bound in essentially the predicted manner, with the 3'-end in the active site and the downstream end under the crossover loop. The central nucleotides of the DNA form a prominent bulge that contacts the SH3-like domain, while the nucleotides at the downstream end of the DNA form extensive interactions with an 'anchor' site. Seven of the complexes are similar to one another, but one has the ssDNA bound in a distinct conformation. The highest-resolution structure, determined at 1.95 Å, reveals an Mg(2+) ion bound to the scissile phosphate in a position corresponding to Mg(B) in related two-metal nucleases. The structures provide new insights into the mechanism of processive digestion that will be discussed.
- Published
- 2013
- Full Text
- View/download PDF
37. Costimulation blockade: current perspectives and implications for therapy.
- Author
-
Kinnear G, Jones ND, and Wood KJ
- Subjects
- Animals, Costimulatory and Inhibitory T-Cell Receptors antagonists & inhibitors, Costimulatory and Inhibitory T-Cell Receptors metabolism, Drug Design, Graft Rejection immunology, Humans, Ligands, Signal Transduction drug effects, T-Lymphocytes immunology, Treatment Outcome, Graft Rejection prevention & control, Graft Survival drug effects, Immunosuppressive Agents therapeutic use, Lymphocyte Activation drug effects, Organ Transplantation adverse effects, T-Lymphocytes drug effects, Transplantation Tolerance drug effects
- Abstract
T cells must be activated before they can elicit damage to allografts, through interaction of their T cell receptor (TCR) with peptide-MHC complex and through accessory molecules. Signaling through accessory molecules or costimulatory molecules is a critical way for the immune system to fine tune T cell activation. An emerging therapeutic strategy is to target selective molecules involved in the process of T cell activation using biologic agents, which do not impact TCR signaling, thus only manipulating the T cells, which recognize alloantigen. Costimulatory receptors and their ligands are attractive targets for this strategy and could be used both to prevent acute graft rejection as well as for maintenance immunosuppression. Therapeutic agents targeting costimulatory molecules, notably belatacept, have made the progression from the bench, through nonhuman primate studies and into the clinic. This overview describes some of the most common costimulatory molecules, their role in T cell activation, and the development of reagents, which target these pathways and their efficacy in transplantation.
- Published
- 2013
- Full Text
- View/download PDF
38. Programs=data=first-class citizens in a computational world.
- Author
-
Jones ND and Simonsen JG
- Abstract
From a programming perspective, Alan Turing's epochal 1936 paper on computable functions introduced several new concepts, including what is today known as self-interpreters and programs as data, and invented a great many now-common programming techniques. We begin by reviewing Turing's contribution from a programming perspective; and then systematize and mention some of the many ways that later developments in models of computation (MOCs) have interacted with computability theory and programming language research. Next, we describe the 'blob' MOC: a recent stored-program computational model without pointers. In the blob model, programs are truly first-class citizens, capable of being automatically compiled, or interpreted, or executed directly. Further, the blob model appears closer to being physically realizable than earlier computation models. In part, this is due to strong finiteness owing to early binding in the program; and a strong adjacency property: the active instruction is always adjacent to the piece of data on which it operates. The model is Turing complete in a strong sense: a universal interpretation algorithm exists that is able to run any program in a natural way and without arcane data encodings. Next, some of the best known among the numerous existing MOCs are described, and we develop a list of traits an 'ideal' MOC should possess from our perspective. We make no attempt to consider all models put forth since Turing's 1936 paper, and the selection of models covered concerns only models with discrete, atomic computation steps. The next step is to classify the selected models by qualitative rather than quantitative features. Finally, we describe how the blob model differs from an 'ideal' MOC, and identify some natural next steps to achieve such a model.
- Published
- 2012
- Full Text
- View/download PDF
39. Chemistry of the heavy group 15 elements with the pyridyl tethered 1,2-bis(imino)acenaphthene "clamshell" ligand.
- Author
-
Brazeau AL, Jones ND, and Ragogna PJ
- Abstract
Cobaltocene has been used as a one-electron reductant in a facile route to generate pnictogen(I) (P, As) synthons. These subsequently undergo a formal 4 + 2 cycloaddition with a pyridyl tethered 1,2-bis(imino)acenaphthene "clamshell" ligand to yield N-heterocyclic chlorophosphines and -arsines, which are precursors to the corresponding N-heterocyclic pnictenium cations. In the absence of a reductant the "clamshell" ligand can be used in forming hypervalent donor-acceptor complexes with heavy main group elements (Sn, Sb and Bi).
- Published
- 2012
- Full Text
- View/download PDF
40. Synthesis, structure, electrochemistry, and electrochemiluminescence of thienyltriazoles.
- Author
-
Swanick KN, Price JT, Jones ND, and Ding Z
- Subjects
- Electrochemistry, Molecular Structure, Quantum Theory, Triazoles chemistry, Luminescence, Triazoles chemical synthesis
- Abstract
Four blue-emitting thienyltriazoles with desired N and O coordination atoms were prepared in high yield via click chemistry for potential incorporation into metal complexes. Three of their crystal structures were determined by X-ray crystallography. The electrochemical properties, electronic structures of these thienyltriazoles, 1-4, and their correlations were studied using cyclic voltammetry and differential pulse voltammetry techniques along with density function theory (DFT) calculations. All of the compounds underwent irreversible redox reactions, leading to unstable electrogenerated radical cations and anions. Electrochemical gaps determined from the differences between first formal reduction and oxidation reactions were correlated to HOMO-LUMO energy gaps obtained from UV-vis spectroscopy and the DFT calculations as well as energies of excited states measured from photoluminescence spectroscopy. We observed weak electrochemiluminescence (ECL) from annihilation of these thienyltriazole radicals in acetonitrile containing 0.1 M tetra-n-butylammonium perchlorate as electrolyte. An enhancement in ECL efficiency ranging from 0.16 to 0.50% was observed upon addition of benzoyl peroxide as a coreactant in the above electrolyte solutions. The generation of excimers in solutions of 1-4 was observed as seen by the red-shift in ECL maxima relative to their corresponding photoluminescence peak wavelengths. Our work is of importance for the development of efficient blue-emitting fluorophores via click chemistry that could be potential luminophores in metal complexes.
- Published
- 2012
- Full Text
- View/download PDF
41. An N-heterocyclic carbene containing a bithiophene backbone: synthesis and coordination chemistry.
- Author
-
Price JT, Jones ND, and Ragogna PJ
- Subjects
- Methane chemistry, Molecular Structure, Coordination Complexes chemical synthesis, Coordination Complexes chemistry, Heterocyclic Compounds chemical synthesis, Heterocyclic Compounds chemistry, Methane analogs & derivatives, Thiophenes chemistry
- Abstract
A new N-heterocyclic carbene (NHC) containing a fused bithiophene backbone has been synthesized along with its silver(I) and BPh(3) complexes. The donor strength of this unique NHC has been determined from the IR stretching frequencies of the isolated NHC-Rh(CO)(2)Cl complex. The photophysical properties of all of the novel compounds have been investigated and are presented.
- Published
- 2012
- Full Text
- View/download PDF
42. Selective blockade of herpesvirus entry mediator-B and T lymphocyte attenuator pathway ameliorates acute graft-versus-host reaction.
- Author
-
del Rio ML, Jones ND, Buhler L, Norris P, Shintani Y, Ware CF, and Rodriguez-Barbosa JI
- Subjects
- Adoptive Transfer, Animals, B-Lymphocyte Subsets immunology, B-Lymphocyte Subsets transplantation, CHO Cells, Cell Movement genetics, Cell Movement immunology, Cricetinae, Female, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Rats, Rats, Inbred Lew, Receptors, Immunologic physiology, Receptors, Tumor Necrosis Factor, Member 14 administration & dosage, Receptors, Tumor Necrosis Factor, Member 14 genetics, Recombinant Fusion Proteins administration & dosage, Spleen cytology, Spleen immunology, T-Lymphocyte Subsets immunology, T-Lymphocyte Subsets metabolism, T-Lymphocyte Subsets transplantation, Graft vs Host Reaction immunology, Receptors, Immunologic antagonists & inhibitors, Receptors, Tumor Necrosis Factor, Member 14 antagonists & inhibitors, Signal Transduction immunology
- Abstract
The cosignaling network mediated by the herpesvirus entry mediator (HVEM; TNFRSF14) functions as a dual directional system that involves proinflammatory ligand, lymphotoxin that exhibits inducible expression and competes with HSV glycoprotein D for HVEM, a receptor expressed by T lymphocytes (LIGHT; TNFSF14), and the inhibitory Ig family member B and T lymphocyte attenuator (BTLA). To dissect the differential contributions of HVEM/BTLA and HVEM/LIGHT interactions, topographically-specific, competitive, and nonblocking anti-HVEM Abs that inhibit BTLA binding, but not LIGHT, were developed. We demonstrate that a BTLA-specific competitor attenuated the course of acute graft-versus-host reaction in a murine F(1) transfer semiallogeneic model. Selective HVEM/BTLA blockade did not inhibit donor T cell infiltration into graft-versus-host reaction target organs, but decreased the functional activity of the alloreactive T cells. These results highlight the critical role of HVEM/BTLA pathway in the control of the allogeneic immune response and identify a new therapeutic target for transplantation and autoimmune diseases.
- Published
- 2012
- Full Text
- View/download PDF
43. Synthesis, reactivity, and computational analysis of halophosphines supported by dianionic guanidinate ligands.
- Author
-
Brazeau AL, Hänninen MM, Tuononen HM, Jones ND, and Ragogna PJ
- Subjects
- Anions chemistry, Crystallography, X-Ray, Ligands, Models, Molecular, Molecular Structure, Guanidines chemistry, Phosphines chemical synthesis, Phosphines chemistry, Quantum Theory
- Abstract
The reported chemistry and reactivity of guanidinate supported group 15 elements in the +3 oxidation state, particularly phosphorus, is limited when compared to their ubiquity in supporting metallic elements across the periodic table. We have synthesized a series of chlorophosphines utilizing homo- and heteroleptic (dianionic)guanidinates and have completed a comprehensive study of their reactivity. Most notable is the reluctancy of these four-membered rings to form the corresponding N-heterocyclic phosphenium cations, the tendency to chemically and thermally eliminate carbodiimide, and the scarcely observed ring expansion by insertion of a chloro(imino)phosphine into a P-N bond of the P-N-C-N framework. Computational analysis has provided corroborating evidence for the unwillingness of the halide abstraction reaction by demonstrating the exceptional electron acceptor properties of the target phosphenium cations and the underscoring strength of the P-X bond.
- Published
- 2012
- Full Text
- View/download PDF
44. Bystander activation of iNKT cells occurs during conventional T-cell alloresponses.
- Author
-
Jukes JP, Wood KJ, and Jones ND
- Subjects
- Animals, Antigens, CD1d immunology, Apoptosis, Blotting, Western, Cell Proliferation, Cells, Cultured, Cytokines genetics, Cytokines metabolism, Enzyme-Linked Immunosorbent Assay, Female, Flow Cytometry, Graft Rejection immunology, Graft Survival immunology, Interleukin-2 metabolism, Isoantigens immunology, Male, Mice, Mice, Inbred BALB C, Mice, Inbred C57BL, Mice, Transgenic, Natural Killer T-Cells cytology, RNA, Messenger genetics, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Transplantation Tolerance immunology, Antigen Presentation immunology, Bystander Effect, Interleukin-2 immunology, Lymphocyte Activation immunology, Natural Killer T-Cells immunology, Natural Killer T-Cells metabolism, Skin Transplantation immunology, T-Lymphocytes immunology
- Abstract
It is well established that iNKT cells can be activated by both exogenous and a limited number of endogenous glycolipids. However, although iNKT cells have been implicated in the immune response to transplanted organs, the mechanisms by which iNKT cells are activated in this context remain unknown. Here we demonstrate that iNKT cells are not activated by allogeneic cells per se, but expand, both in vitro and in vivo, in the presence of a concomitant conventional T-cell response to alloantigen. This form of iNKT activation was found to occur independently of TCR-glycolipid/CD1d interactions but rather was a result of sequestration of IL-2 produced by conventional alloreactive T cells. These results show for the first time that IL-2, produced by activated conventional T cells, can activate iNKT cells independently of glycolipid/CD1d recognition. Therefore, we propose that the well-documented involvement of iNKT cells in autoimmunity, the control of cancer as well as following transplantation need not involve recognition of endogenous or exogenous glycolipids but alternatively may be a consequence of specific adaptive immune responses., (© copyright 2011 The American Society of Transplantation and the American Society of Transplant Surgeons.)
- Published
- 2012
- Full Text
- View/download PDF
45. Immunology in the Clinic Review Series; focus on host responses: invariant natural killer T cell activation following transplantation.
- Author
-
Jukes JP and Jones ND
- Subjects
- Adaptive Immunity, Animals, Antigen Presentation, Bystander Effect, Cytokines physiology, Glycolipids immunology, Humans, Immune Tolerance, Interferon-gamma biosynthesis, Interferon-gamma metabolism, Interleukin-2 metabolism, Lymphocyte Activation, Lymphokines biosynthesis, Lymphokines metabolism, Mice, Models, Immunological, Receptors, Antigen, T-Cell immunology, T-Lymphocytes metabolism, Natural Killer T-Cells immunology, Transplantation Immunology
- Abstract
Invariant natural killer T (iNKT) cells have been shown to play a key role in the regulation of immunity in health and disease. However, iNKT cell responses have also been found to influence both rejection and the induction of tolerance following transplantation of allogeneic cells or organs. Although a number of mechanisms have been identified that lead to iNKT cell activation, how iNKT cells are activated following transplantation remains unknown. This review will attempt to identify potential mechanisms of iNKT cell activation in the context of transplantation by applying knowledge garnered from other disease situations. Furthermore, we put forward a novel mechanism of iNKT cell activation which we believe may be the dominant mechanism responsible for iNKT activation in this setting, i.e. bystander activation by interleukin-2 secreted by recently activated conventional T cells., (© 2011 The Authors. Clinical and Experimental Immunology © 2011 British Society for Immunology.)
- Published
- 2012
- Full Text
- View/download PDF
46. Group 15 pnictenium cations supported by a conjugated bithiophene backbone.
- Author
-
Price JT, Lui M, Jones ND, and Ragogna PJ
- Abstract
Thiophene based polymers and oligomers have attracted considerable attention because they can be functionalized to alter the gap between the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO), which enables the design of tunable light emitting materials. One area, which has been less explored, is the incorporation of low coordinate, low oxidation state main group elements into these systems. We have currently developed a novel π-conjugated ligand containing two contiguous thiophene rings in which we have demonstrated its ability to support both pnictogen cations and their metal complexes., (© 2011 American Chemical Society)
- Published
- 2011
- Full Text
- View/download PDF
47. Electrogenerated chemiluminescence of triazole-modified deoxycytidine analogues in N,N-dimethylformamide.
- Author
-
Swanick KN, Dodd DW, Price JT, Brazeau AL, Jones ND, Hudson RH, and Ding Z
- Subjects
- Dimethylformamide, Electrochemical Techniques, Luminescence, Cytidine analogs & derivatives, Formamides chemistry, Triazoles chemistry
- Abstract
Triazole-modified deoxycytidines have been prepared for incorporation into single-stranded deoxyribonucleic acid (ssDNA). Electrochemical responses and electrogenerated chemiluminescence (ECL) of these deoxycytidine (dC) analogues, 1-4, were investigated as the monomers. Cyclic voltammetry and differential pulse voltammetry techniques were used to determine the oxidation and reduction potentials of 1-4, along with the reversibility of their electrochemical reactions. The dC analogues, in N,N-dimethylformamide containing 0.1 M tetra-n-butylammonium perchlorate as electrolyte, exhibited weak relative ECL efficiencies following the annihilation mechanism, while these efficiencies were enhanced with the use of benzoyl peroxide following the coreactant mechanism. It was shown that these nucleosides could generate excited monomers, and excimers as seen by the red-shifted ECL maxima relative to their corresponding photoluminescence peak wavelengths.
- Published
- 2011
- Full Text
- View/download PDF
48. Th17: contributors to allograft rejection and a barrier to the induction of transplantation tolerance?
- Author
-
Chadha R, Heidt S, Jones ND, and Wood KJ
- Subjects
- Animals, Autoimmune Diseases etiology, Autoimmune Diseases immunology, Drug Resistance immunology, Humans, Immunosuppressive Agents pharmacology, Mice, Models, Immunological, Signal Transduction immunology, T-Lymphocytes, Regulatory immunology, Th1 Cells immunology, Th17 Cells drug effects, Transplantation, Homologous, Graft Rejection etiology, Graft Rejection immunology, Th17 Cells immunology, Transplantation Tolerance immunology
- Abstract
T helper (Th) type 17 cells are a recently described CD4 T-cell subset that may contribute to allograft rejection and act as a barrier to the induction of transplant tolerance. This review examines the involvement of Th17 cells in transplant rejection, how immunosuppressive medication may affect their induction and maintenance and the potential plasticity of developing Th17 cells. It also addresses the complex interplay between the Th17 and regulatory T-cell developmental pathways and the susceptibility of Th17 cells to regulation. Despite accumulating evidence, the precise impact of Th17 cells on transplant rejection and the induction of tolerance require further clarification.
- Published
- 2011
- Full Text
- View/download PDF
49. A common biomarker signature for tolerated allografts and self tissues.
- Author
-
Moine AL and Jones ND
- Published
- 2011
- Full Text
- View/download PDF
50. Immunologic unresponsiveness to alloantigen in vivo: a role for regulatory T cells.
- Author
-
Wood KJ, Bushell A, and Jones ND
- Subjects
- Animals, Autoimmunity, Clinical Protocols, Graft Rejection immunology, Humans, Organ Transplantation, T-Lymphocytes, Regulatory transplantation, Graft Rejection therapy, Immune Tolerance, Immunotherapy, Adoptive, Isoantigens immunology, T-Lymphocytes, Regulatory immunology
- Abstract
Exposure to alloantigen in vivo or in vitro induces alloantigen reactive regulatory T cells that can control transplant rejection. The mechanisms that underpin the activity of alloantigen reactive regulatory T cells in vivo are common with those of regulatory T cells that prevent autoimmunity. The identification and characterization of regulatory T cells that control rejection and contribute to the induction of immunologic unresponsiveness to alloantigens in vivo has opened up exciting opportunities for new therapies in transplantation. Findings from laboratory studies are informing the design of clinical protocols using regulatory T cells as a cellular therapy., (© 2011 John Wiley & Sons A/S.)
- Published
- 2011
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.