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2. Heart rate and respiratory rate in predicting risk of serious bacterial infection in febrile children given antipyretics

Author

Wittmann, S, Jorgensen, R, Oostenbrink, R, Moll, H, Herberg, J, Levin, M, Maconochie, I, Nijman, R, and Pediatrics

Subjects
Pediatrics, Perinatology and Child Health
Abstract

Clinical algorithms used in the assessment of febrile children in the Paediatric Emergency Departments are commonly based on threshold values for vital signs, which in children with fever are often outside the normal range. Our aim was to assess the diagnostic value of heart and respiratory rate for serious bacterial infection (SBI) in children after temperature lowering following administration of antipyretics. A prospective cohort of children presenting with fever between June 2014 and March 2015 at the Paediatric Emergency Department of a large teaching hospital in London, UK, was performed. Seven hundred forty children aged 1 month–16 years presenting with a fever and ≥ 1 warning signs of SBI given antipyretics were included. Tachycardia or tachypnoea were defined by different threshold values: (a) APLS threshold values, (b) age-specific and temperature-adjusted centiles charts and (c) relative difference in z-score. SBI was defined by a composite reference standard (cultures from a sterile site, microbiology and virology results, radiological abnormalities, expert panel). Persistent tachypnoea after body temperature lowering was an important predictor of SBI (OR 1.92, 95% CI 1.15, 3.30). This effect was only observed for pneumonia but not other SBIs. Threshold values for tachypnoea > 97th centile at repeat measurement achieved high specificity (0.95 (0.93, 0.96)) and positive likelihood ratios (LR + 3.25 (1.73, 6.11)) and may be useful for ruling in SBI, specifically pneumonia. Persistent tachycardia was not an independent predictor of SBI and had limited value as a diagnostic test. Conclusion: Among children given antipyretics, tachypnoea at repeat measurement had some value in predicting SBI and was useful to rule in pneumonia. The diagnostic value of tachycardia was poor. Overreliance on heart rate as a diagnostic feature following body temperature lowering may not be justified to facilitate safe discharge. What is Known:• Abnormal vital signs at triage have limited value as a diagnostic test to identify children with SBI, and fever alters the specificity of commonly used threshold values for vital signs.• The observed temperature response after antipyretics is not a clinically useful indicator to differentiate the cause of febrile illness. What is New:• Persistent tachycardia following reduction in body temperature was not associated with an increased risk of SBI and of poor value as a diagnostic test, whilst persistent tachypnoea may indicate the presence of pneumonia.

Published
2023
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3. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

Author

Tuskan, G.A., DiFazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., Putnam, N., Ralph, S., Rombauts, S., Salamov, A., Schein, J., Sterck, L., Aerts, A., Bhalerao, R.R., Bhalerao, R.P., Blaudez, D., Boerjan, W., Brun, A., Brunner, A., Busov, V., Campbell, M., Carlson, J., Chalot, M., Chapman, J., Chen, G.-L., Cooper, D., Coutinho, P.M., Couturier, J., Covert, S., Cronk, Q., Cunningham, R., Davis, J., Degroeve, S., Dejardin, A., dePamphillis, C., Detter, J., Dirks, B., Dubchak, I., Duplessis, S., Ehiting, J., Ellis, B., Gendler, K., Goodstein, D., Gribskov, M., Grimwood, J., Groover, A., Gunter, L., Hamberger, B., Heinze, B., Helariutta, Y., Henrissat, B., Holligan, D., Holt, R., Huang, W., Islam-Faridi, N., Jones, S., Jones-Rhoades, M., Jorgensen, R., Joshi, C., Kangasjarvi, J., Karlsson, J., Kelleher, C., Kirkpatrick, R., Kirst, M., Kohler, A., Kalluri, U., Larimer, F., Leebens-Mack, J., Leple, J.-C., Locascio, P., Lou, Y., Lucas, S., Martin, F., Montanini, B., Napoli, C., Nelson, D.R., Nelson, D., Nieminen, K., Nilsson, O., Peter, G., Philippe, R., Pilate, G., Poliakov, A., Razumovskaya, J., Richardson, P., Rinaldi, C., Ritland, K., Rouze, P., Ryaboy, D., Schmutz, J., Schrader, J., Segerman, B., Shin, H., Siddiqui, A., Sterky, F., Terry, A., Tsai, C., Uberbacher, E., Unneberg, P., and Vahala, J.

Subjects
Basic biological sciences
Published
2006

4. Conclusions and recommendations

Author

Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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5. Legal problems of pharming

Author

Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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6. The ethical evaluation of pharming

Author

Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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7. The role of patents in the development of pharming

Author

Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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8. Public views and attitudes to pharming

Author

Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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9. Risk assessment of plant pharming and animal pharming

Author

Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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10. The welfare of pharming animals

Author

Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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11. The technology of pharming

Author

Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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12. Introduction

Author

Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., Thiele, F., Gethmann, Carl Friedrich, editor, Rehbinder, Eckard, Rehbinder, E., Engelhard, M., Hagen, K., Jørgensen, R. B., Pardo-Avellaneda, R., Schnieke, A., and Thiele, F.

Published
2009
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13. Correction to: Febrile illness in high-risk children: a prospective, international observational study (European Journal of Pediatrics, (2022), 182, 2, (543-554), 10.1007/s00431-022-04642-1)

Author

van der Velden, F.J.S. de Vries, G. Martin, A. Lim, E. von Both, U. Kolberg, L. Carrol, E.D. Khanijau, A. Herberg, J.A. De, T. Galassini, R. Kuijpers, T.W. Martinón-Torres, F. Rivero-Calle, I. Vermont, C.L. Hagedoorn, N.N. Pokorn, M. Pollard, A.J. Schlapbach, L.J. Tsolia, M. Elefhteriou, I. Yeung, S. Zavadska, D. Fink, C. Voice, M. Zenz, W. Kohlmaier, B. Agyeman, P.K.A. Usuf, E. Secka, F. de Groot, R. Levin, M. van der Flier, M. Emonts, M. Cunnington, A. Herberg, J. Kaforou, M. Wright, V. Baumard, L. Bellos, E. D’Souza, G. Habgood-Coote, D. Hamilton, S. Hoggart, C. Hourmat, S. Jackson, H. Maconochie, I. Menikou, S. Lin, N. Nichols, S. Nijman, R. Powell, O. Pena Paz, I. Shah, P. Shen, C.-F. Vito, O. Wilson, C. Abdulla, A. Ali, L. Darnell, S. Jorgensen, R. Mustafa, S. Persand, S. Stevens, M.M. Kim, N. Kim, E. Fidler, K. Dudley, J. Richmond, V. Tavliavini, E. Shen, C.-F. Liu, C.-C. Wang, S.-M. Salas, A. González, F.Á. Farto, C.B. Barral-Arca, R. Castro, M.´B. Bello, X. García, M.B. Carnota, S. Cebey-López, M. Curras-Tuala, M.J. Suárez, C.D. Vicente, L.G. Gómez-Carballa, A. Rial, J.G. Iglesias, P.L. Martinón-Torres, N. Sánchez, J.M.M. Pérez, B.M. Pardo-Seco, J. Rodríguez, L.P. Pischedda, S. Vázquez, S.R. Calle, I.R. Rodríguez-Tenreiro, C. Redondo-Collazo, L. Ora, M.S. Salas, A. Fernández, S.S. Trasorras, C.S. Iglesias, M.V. Balode, A. Barzdina, A. Deksne, D. Gardovska, D. Gravele, D. Grope, I. Meiere, A. Nokalna, I. Pavare, J. Pucuka, Z. Selecka, K. Rudzate, A. Svile, D. Urbane, U.N. Bojang, K. Zaman, S.M.A. Anderson, S. Sarr, A.R.I. Saidykhan, M. Darboe, S. Ceesay, S. D’alessandro, U. Moll, H.A. Vermont, C.L. Borensztajn, D.M. Tan, C. Zachariasse, J. Dik, W. Agyeman, P.K. Berger, C. Giannoni, E. Stocker, M. Posfay-Barbe, K.M. Heininger, U. Bernhard-Stirnemann, S. Niederer-Loher, A. Kahlert, C.R. Natalucci, G. Relly, C. Riedel, T. Aebi, C. Schlapbach, L.J. Carrol, E.D. Cocklin, E. Jennings, R. Johnston, J. Leigh, S. Lewis-Burke, N. Newall, K. Romaine, S. Eleftheriou, I. and van der Velden, F.J.S. de Vries, G. Martin, A. Lim, E. von Both, U. Kolberg, L. Carrol, E.D. Khanijau, A. Herberg, J.A. De, T. Galassini, R. Kuijpers, T.W. Martinón-Torres, F. Rivero-Calle, I. Vermont, C.L. Hagedoorn, N.N. Pokorn, M. Pollard, A.J. Schlapbach, L.J. Tsolia, M. Elefhteriou, I. Yeung, S. Zavadska, D. Fink, C. Voice, M. Zenz, W. Kohlmaier, B. Agyeman, P.K.A. Usuf, E. Secka, F. de Groot, R. Levin, M. van der Flier, M. Emonts, M. Cunnington, A. Herberg, J. Kaforou, M. Wright, V. Baumard, L. Bellos, E. D’Souza, G. Habgood-Coote, D. Hamilton, S. Hoggart, C. Hourmat, S. Jackson, H. Maconochie, I. Menikou, S. Lin, N. Nichols, S. Nijman, R. Powell, O. Pena Paz, I. Shah, P. Shen, C.-F. Vito, O. Wilson, C. Abdulla, A. Ali, L. Darnell, S. Jorgensen, R. Mustafa, S. Persand, S. Stevens, M.M. Kim, N. Kim, E. Fidler, K. Dudley, J. Richmond, V. Tavliavini, E. Shen, C.-F. Liu, C.-C. Wang, S.-M. Salas, A. González, F.Á. Farto, C.B. Barral-Arca, R. Castro, M.´B. Bello, X. García, M.B. Carnota, S. Cebey-López, M. Curras-Tuala, M.J. Suárez, C.D. Vicente, L.G. Gómez-Carballa, A. Rial, J.G. Iglesias, P.L. Martinón-Torres, N. Sánchez, J.M.M. Pérez, B.M. Pardo-Seco, J. Rodríguez, L.P. Pischedda, S. Vázquez, S.R. Calle, I.R. Rodríguez-Tenreiro, C. Redondo-Collazo, L. Ora, M.S. Salas, A. Fernández, S.S. Trasorras, C.S. Iglesias, M.V. Balode, A. Barzdina, A. Deksne, D. Gardovska, D. Gravele, D. Grope, I. Meiere, A. Nokalna, I. Pavare, J. Pucuka, Z. Selecka, K. Rudzate, A. Svile, D. Urbane, U.N. Bojang, K. Zaman, S.M.A. Anderson, S. Sarr, A.R.I. Saidykhan, M. Darboe, S. Ceesay, S. D’alessandro, U. Moll, H.A. Vermont, C.L. Borensztajn, D.M. Tan, C. Zachariasse, J. Dik, W. Agyeman, P.K. Berger, C. Giannoni, E. Stocker, M. Posfay-Barbe, K.M. Heininger, U. Bernhard-Stirnemann, S. Niederer-Loher, A. Kahlert, C.R. Natalucci, G. Relly, C. Riedel, T. Aebi, C. Schlapbach, L.J. Carrol, E.D. Cocklin, E. Jennings, R. Johnston, J. Leigh, S. Lewis-Burke, N. Newall, K. Romaine, S. Eleftheriou, I.

Abstract

In the original published version of the above article, the names of members of the PERFORM consortium were not introduced in the authorship section. The names are now properly displayed. The complete consortium list has been added as Supplementary material to the original article. The original article has been corrected. © 2023, The Author(s).

Published
2023

19. Guideline adherence in febrile children below 3 months visiting European Emergency Departments: an observational multicenter study

Author

Tan, C.D. van der Walle, E.E.P.L. Vermont, C.L. von Both, U. Carrol, E.D. Eleftheriou, I. Emonts, M. van der Flier, M. de Groot, R. Herberg, J. Kohlmaier, B. Levin, M. Lim, E. Maconochie, I.K. Martinon-Torres, F. Nijman, R.G. Pokorn, M. Rivero-Calle, I. Tsolia, M. Yeung, S. Zenz, W. Zavadska, D. Moll, H.A. Levin, M. Cunnington, A. De, T. Herberg, J. Kaforou, M. Wright, V. Baumard, L. Bellos, E. D’Souza, G. Galassini, R. Habgood-Coote, D. Hamilton, S. Hoggart, C. Hourmat, S. Jackson, H. Maconochie, I. Menikou, S. Lin, N. Nichols, S. Nijman, R. Pena Paz, I. Shah, P. Shen, C.-F. Vito, O. Wilson, C. Abdulla, A. Ali, L. Darnell, S. Jorgensen, R. Mustafa, S. Persand, S. Stevens, M. Kim, E. Pierce, B. Fidler, K. Dudley, J. Richmond, V. Tavliavini, E. Liu, C.-C. Wang, S.-M. Martinón-Torres, F. Salas, A. Álvez González, F. Balo Farto, C. Barral-Arca, R. Barreiro Castro, M. Bello, X. García, M.B. Carnota, S. Cebey-López, M. Curras-Tuala, M.J. Durán Suárez, C. García Vicente, L. Gómez-Carballa, A. Gómez Rial, J. Leboráns Iglesias, P. Martinón-Torres, F. Martinón-Torres, N. Martinón Sánchez, J.M. Mosquera Pérez, B. Pardo-Seco, J. Piñeiro Rodríguez, L. Pischedda, S. Vázquez, S.R. Rivero Calle, I. Rodríguez-Tenreiro, C. Redondo-Collazo, L. Sadiki Ora, M. Salas, A. Serén Fernández, S. Serén Trasorras, C. Vilas Iglesias, M. Zavadska, D. Balode, A. Bārzdiņa, A. Deksne, D. Gardovska, D. Grāvele, D. Grope, I. Meiere, A. Nokalna, I. Pavāre, J. Pučuka, Z. Selecka, K. Sidorova, A. Svile, D. Urbāne, U.N. Usuf, E. Bojang, K. Zaman, S.M.A. Secka, F. Anderson, S. Roca, A. Sarr, I. Saidykhan, M. Darboe, S. Ceesay, S. D’alessandro, U. Moll, H.A. Borensztajn, D.M. Hagedoorn, N.N. Tan, C. Vermont, C.L. Zachariasse, J. Dik, W. Agyeman, P. Schlapbach, L.J. Aebi, C. Wyss, V. Usman, M. Agyeman, P. Schlapbach, L.J. Giannoni, E. Stocker, M. Posfay-Barbe, K.M. Heininger, U. Bernhard-Stirnemann, S. Niederer-Loher, A. Kahlert, C. Natalucci, G. Relly, C. Riedel, T. Aebi, C. Berger, C. Carrol, E.D. Paulus and Tan, C.D. van der Walle, E.E.P.L. Vermont, C.L. von Both, U. Carrol, E.D. Eleftheriou, I. Emonts, M. van der Flier, M. de Groot, R. Herberg, J. Kohlmaier, B. Levin, M. Lim, E. Maconochie, I.K. Martinon-Torres, F. Nijman, R.G. Pokorn, M. Rivero-Calle, I. Tsolia, M. Yeung, S. Zenz, W. Zavadska, D. Moll, H.A. Levin, M. Cunnington, A. De, T. Herberg, J. Kaforou, M. Wright, V. Baumard, L. Bellos, E. D’Souza, G. Galassini, R. Habgood-Coote, D. Hamilton, S. Hoggart, C. Hourmat, S. Jackson, H. Maconochie, I. Menikou, S. Lin, N. Nichols, S. Nijman, R. Pena Paz, I. Shah, P. Shen, C.-F. Vito, O. Wilson, C. Abdulla, A. Ali, L. Darnell, S. Jorgensen, R. Mustafa, S. Persand, S. Stevens, M. Kim, E. Pierce, B. Fidler, K. Dudley, J. Richmond, V. Tavliavini, E. Liu, C.-C. Wang, S.-M. Martinón-Torres, F. Salas, A. Álvez González, F. Balo Farto, C. Barral-Arca, R. Barreiro Castro, M. Bello, X. García, M.B. Carnota, S. Cebey-López, M. Curras-Tuala, M.J. Durán Suárez, C. García Vicente, L. Gómez-Carballa, A. Gómez Rial, J. Leboráns Iglesias, P. Martinón-Torres, F. Martinón-Torres, N. Martinón Sánchez, J.M. Mosquera Pérez, B. Pardo-Seco, J. Piñeiro Rodríguez, L. Pischedda, S. Vázquez, S.R. Rivero Calle, I. Rodríguez-Tenreiro, C. Redondo-Collazo, L. Sadiki Ora, M. Salas, A. Serén Fernández, S. Serén Trasorras, C. Vilas Iglesias, M. Zavadska, D. Balode, A. Bārzdiņa, A. Deksne, D. Gardovska, D. Grāvele, D. Grope, I. Meiere, A. Nokalna, I. Pavāre, J. Pučuka, Z. Selecka, K. Sidorova, A. Svile, D. Urbāne, U.N. Usuf, E. Bojang, K. Zaman, S.M.A. Secka, F. Anderson, S. Roca, A. Sarr, I. Saidykhan, M. Darboe, S. Ceesay, S. D’alessandro, U. Moll, H.A. Borensztajn, D.M. Hagedoorn, N.N. Tan, C. Vermont, C.L. Zachariasse, J. Dik, W. Agyeman, P. Schlapbach, L.J. Aebi, C. Wyss, V. Usman, M. Agyeman, P. Schlapbach, L.J. Giannoni, E. Stocker, M. Posfay-Barbe, K.M. Heininger, U. Bernhard-Stirnemann, S. Niederer-Loher, A. Kahlert, C. Natalucci, G. Relly, C. Riedel, T. Aebi, C. Berger, C. Carrol, E.D. Paulus

Abstract

Febrile children below 3 months have a higher risk of serious bacterial infections, which often leads to extensive diagnostics and treatment. There is practice variation in management due to differences in guidelines and their usage and adherence. We aimed to assess whether management in febrile children below 3 months attending European Emergency Departments (EDs) was according to the guidelines for fever. This study is part of the MOFICHE study, which is an observational multicenter study including routine data of febrile children (0–18 years) attending twelve EDs in eight European countries. In febrile children below 3 months (excluding bronchiolitis), we analyzed actual management compared to the guidelines for fever. Ten EDs applied the (adapted) NICE guideline, and two EDs applied local guidelines. Management included diagnostic tests, antibiotic treatment, and admission. We included 913 children with a median age of 1.7 months (IQR 1.0–2.3). Management per ED varied as follows: use of diagnostic tests 14–83%, antibiotic treatment 23–54%, admission 34–86%. Adherence to the guideline was 43% (374/868) for blood cultures, 29% (144/491) for lumbar punctures, 55% (270/492) for antibiotic prescriptions, and 67% (573/859) for admission. Full adherence to these four management components occurred in 15% (132/868, range 0–38%), partial adherence occurred in 56% (484/868, range 35–77%). Conclusion: There is large practice variation in management. The guideline adherence was limited, but highest for admission which implies a cautious approach. Future studies should focus on guideline revision including new biomarkers in order to optimize management in young febrile children.What is Known:• Febrile children below 3 months have a higher risk of serious bacterial infections, which often leads to extensive diagnostics and treatment.• There is practice variation in management of young febrile children due to differences in guidelines and their usage and adherence.What is New

Published
2022

20. The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

Author

Tuskan, G. A., DiFazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., Putnam, N., Ralph, S., Rombauts, S., Salamov, A., Schein, J., Sterck, L., Aerts, A., Bhalerao, R. R., Bhalerao, R. P., Blaudez, D., Boerjan, W., Brun, A., Brunner, A., Busov, V., Campbell, M., Carlson, J., Chalot, M., Chapman, J., Chen, G.-L., Cooper, D., Coutinho, P. M., Couturier, J., Covert, S., Cronk, Q., Cunningham, R., Davis, J., Degroeve, S., Déjardin, A., dePamphilis, C., Detter, J., Dirks, B., Dubchak, I., Duplessis, S., Ehlting, J., Ellis, B., Gendler, K., Goodstein, D., Gribskov, M., Grimwood, J., Groover, A., Gunter, L., Hamberger, B., Heinze, B., Helariutta, Y., Henrissat, B., Holligan, D., Holt, R., Huang, W., Islam-Faridi, N., Jones, S., Jones-Rhoades, M., Jorgensen, R., Joshi, C., Kangasjärvi, J., Karlsson, J., Kelleher, C., Kirkpatrick, R., Kirst, M., Kohler, A., Kalluri, U., Larimer, F., Leebens-Mack, J., Leplé, J.-C., Locascio, P., Lou, Y., Lucas, S., Martin, F., Montanini, B., Napoli, C., Nelson, D. R., Nelson, C., Nieminen, K., Nilsson, O., Pereda, V., Peter, G., Philippe, R., Pilate, G., Poliakov, A., Razumovskaya, J., Richardson, P., Rinaldi, C., Ritland, K., Rouzé, P., Ryaboy, D., Schmutz, J., Schrader, J., Segerman, B., Shin, H., Siddiqui, A., Sterky, F., Terry, A., Tsai, C.-J., Uberbacher, E., Unneberg, P., Vahala, J., Wall, K., Wessler, S., Yang, G., Yin, T., Douglas, C., Marra, M., Sandberg, G., Van de Peer, Y., and Rokhsar, D.

Published
2006

40. Tundra Trait Team:a database of plant traits spanning the tundra biome

Author

Bjorkman, A. D. (Anne D.), Myers-Smith, I. H. (Isla H.), Elmendorf, S. C. (Sarah C.), Normand, S. (Signe), Thomas, H. J. (Haydn J. D.), Alatalo, J. M. (Juha M.), Alexander, H. (Heather), Anadon-Rosell, A. (Alba), Angers-Blondin, S. (Sandra), Bai, Y. (Yang), Baruah, G. (Gaurav), te Beest, M. (Mariska), Berner, L. (Logan), Bjork, R. G. (Robert G.), Blok, D. (Daan), Bruelheide, H. (Helge), Buchwal, A. (Agata), Buras, A. (Allan), Carbognani, M. (Michele), Christie, K. (Katherine), Collier, L. S. (Laura S.), Cooper, E. J. (Elisabeth J.), Cornelissen, J. H. (J. Hans C.), Dickinson, K. J. (Katharine J. M.), Dullinger, S. (Stefan), Elberling, B. (Bo), Eskelinen, A. (Anu), Forbes, B. C. (Bruce C.), Frei, E. R. (Esther R.), Iturrate-Garcia, M. (Maitane), Good, M. K. (Megan K.), Grau, O. (Oriol), Green, P. (Peter), Greve, M. (Michelle), Grogan, P. (Paul), Haider, S. (Sylvia), Hajek, T. (Tomas), Hallinger, M. (Martin), Happonen, K. (Konsta), Harper, K. A. (Karen A.), Heijmans, M. M. (Monique M. P. D.), Henry, G. H. (Gregory H. R.), Hermanutz, L. (Luise), Hewitt, R. E. (Rebecca E.), Hollister, R. D. (Robert D.), Hudson, J. (James), Huelber, K. (Karl), Iversen, C. M. (Colleen M.), Jaroszynska, F. (Francesca), Jimenez-Alfaro, B. (Borja), Johnstone, J. (Jill), Jorgensen, R. H. (Rasmus Halfdan), Kaarlejarvi, E. (Elina), Klady, R. (Rebecca), Klimesova, J. (Jitka), Korsten, A. (Annika), Kuleza, S. (Sara), Kulonen, A. (Aino), Lamarque, L. J. (Laurent J.), Lantz, T. (Trevor), Lavalle, A. (Amanda), Lembrechts, J. J. (Jonas J.), Levesque, E. (Esther), Little, C. J. (Chelsea J.), Luoto, M. (Miska), Macek, P. (Petr), Mack, M. C. (Michelle C.), Mathakutha, R. (Rabia), Michelsen, A. (Anders), Milbau, A. (Ann), Molau, U. (Ulf), Morgan, J. W. (John W.), Morsdorf, M. A. (Martin Alfons), Nabe-Nielsen, J. (Jacob), Nielsen, S. S. (Sigrid Scholer), Ninot, J. M. (Josep M.), Oberbauer, S. F. (Steven F.), Olofsson, J. (Johan), Onipchenko, V. G. (Vladimir G.), Petraglia, A. (Alessandro), Pickering, C. (Catherine), Prevey, J. S. (Janet S.), Rixen, C. (Christian), Rumpf, S. B. (Sabine B.), Schaepman-Strub, G. (Gabriela), Semenchuk, P. (Philipp), Shetti, R. (Rohan), Soudzilovskaia, N. A. (Nadejda A.), Spasojevic, M. J. (Marko J.), Speed, J. D. (James David Mervyn), Street, L. E. (Lorna E.), Suding, K. (Katharine), Tape, K. D. (Ken D.), Tomaselli, M. (Marcello), Trant, A. (Andrew), Treier, U. A. (Urs A.), Tremblay, J.-P. (Jean-Pierre), Tremblay, M. (Maxime), Venn, S. (Susanna), Virkkala, A.-M. (Anna-Maria), Vowles, T. (Tage), Weijers, S. (Stef), Wilmking, M. (Martin), Wipf, S. (Sonja), Zamin, T. (Tara), Bjorkman, A. D. (Anne D.), Myers-Smith, I. H. (Isla H.), Elmendorf, S. C. (Sarah C.), Normand, S. (Signe), Thomas, H. J. (Haydn J. D.), Alatalo, J. M. (Juha M.), Alexander, H. (Heather), Anadon-Rosell, A. (Alba), Angers-Blondin, S. (Sandra), Bai, Y. (Yang), Baruah, G. (Gaurav), te Beest, M. (Mariska), Berner, L. (Logan), Bjork, R. G. (Robert G.), Blok, D. (Daan), Bruelheide, H. (Helge), Buchwal, A. (Agata), Buras, A. (Allan), Carbognani, M. (Michele), Christie, K. (Katherine), Collier, L. S. (Laura S.), Cooper, E. J. (Elisabeth J.), Cornelissen, J. H. (J. Hans C.), Dickinson, K. J. (Katharine J. M.), Dullinger, S. (Stefan), Elberling, B. (Bo), Eskelinen, A. (Anu), Forbes, B. C. (Bruce C.), Frei, E. R. (Esther R.), Iturrate-Garcia, M. (Maitane), Good, M. K. (Megan K.), Grau, O. (Oriol), Green, P. (Peter), Greve, M. (Michelle), Grogan, P. (Paul), Haider, S. (Sylvia), Hajek, T. (Tomas), Hallinger, M. (Martin), Happonen, K. (Konsta), Harper, K. A. (Karen A.), Heijmans, M. M. (Monique M. P. D.), Henry, G. H. (Gregory H. R.), Hermanutz, L. (Luise), Hewitt, R. E. (Rebecca E.), Hollister, R. D. (Robert D.), Hudson, J. (James), Huelber, K. (Karl), Iversen, C. M. (Colleen M.), Jaroszynska, F. (Francesca), Jimenez-Alfaro, B. (Borja), Johnstone, J. (Jill), Jorgensen, R. H. (Rasmus Halfdan), Kaarlejarvi, E. (Elina), Klady, R. (Rebecca), Klimesova, J. (Jitka), Korsten, A. (Annika), Kuleza, S. (Sara), Kulonen, A. (Aino), Lamarque, L. J. (Laurent J.), Lantz, T. (Trevor), Lavalle, A. (Amanda), Lembrechts, J. J. (Jonas J.), Levesque, E. (Esther), Little, C. J. (Chelsea J.), Luoto, M. (Miska), Macek, P. (Petr), Mack, M. C. (Michelle C.), Mathakutha, R. (Rabia), Michelsen, A. (Anders), Milbau, A. (Ann), Molau, U. (Ulf), Morgan, J. W. (John W.), Morsdorf, M. A. (Martin Alfons), Nabe-Nielsen, J. (Jacob), Nielsen, S. S. (Sigrid Scholer), Ninot, J. M. (Josep M.), Oberbauer, S. F. (Steven F.), Olofsson, J. (Johan), Onipchenko, V. G. (Vladimir G.), Petraglia, A. (Alessandro), Pickering, C. (Catherine), Prevey, J. S. (Janet S.), Rixen, C. (Christian), Rumpf, S. B. (Sabine B.), Schaepman-Strub, G. (Gabriela), Semenchuk, P. (Philipp), Shetti, R. (Rohan), Soudzilovskaia, N. A. (Nadejda A.), Spasojevic, M. J. (Marko J.), Speed, J. D. (James David Mervyn), Street, L. E. (Lorna E.), Suding, K. (Katharine), Tape, K. D. (Ken D.), Tomaselli, M. (Marcello), Trant, A. (Andrew), Treier, U. A. (Urs A.), Tremblay, J.-P. (Jean-Pierre), Tremblay, M. (Maxime), Venn, S. (Susanna), Virkkala, A.-M. (Anna-Maria), Vowles, T. (Tage), Weijers, S. (Stef), Wilmking, M. (Martin), Wipf, S. (Sonja), and Zamin, T. (Tara)

Abstract

Motivation: The Tundra Trait Team (TTT) database includes field‐based measurements of key traits related to plant form and function at multiple sites across the tundra biome. This dataset can be used to address theoretical questions about plant strategy and trade‐offs, trait–environment relationships and environmental filtering, and trait variation across spatial scales, to validate satellite data, and to inform Earth system model parameters. Main types of variable contained: The database contains 91,970 measurements of 18 plant traits. The most frequently measured traits (> 1,000 observations each) include plant height, leaf area, specific leaf area, leaf fresh and dry mass, leaf dry matter content, leaf nitrogen, carbon and phosphorus content, leaf C:N and N:P, seed mass, and stem specific density. Spatial location and grain: Measurements were collected in tundra habitats in both the Northern and Southern Hemispheres, including Arctic sites in Alaska, Canada, Greenland, Fennoscandia and Siberia, alpine sites in the European Alps, Colorado Rockies, Caucasus, Ural Mountains, Pyrenees, Australian Alps, and Central Otago Mountains (New Zealand), and sub‐Antarctic Marion Island. More than 99% of observations are georeferenced. Time period and grain: All data were collected between 1964 and 2018. A small number of sites have repeated trait measurements at two or more time periods. Major taxa and level of measurement: Trait measurements were made on 978 terrestrial vascular plant species growing in tundra habitats. Most observations are on individuals (86%), while the remainder represent plot or site means or maximums per species. Software format: csv file and GitHub repository with data cleaning scripts in R; contribution to TRY plant trait database (www.try-db.org) to be included in the next version release.

Published
2018

41. Tundra Trait Team: A database of plant traits spanning the tundra biome

Author

Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Normand, S., Thomas, H. J. D., Alatalo, J. M., Alexander, H., Anadon-Rosell, A., Angers-Blondin, S., Bai, Y., Baruah, G., te Beest, M., Berner, L., Björk, R. G., Blok, D., Bruelheide, H., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Collier, L. S., Cooper, E. J., Cornelissen, J. H. C., Dickinson, K. J. M., Dullinger, S., Elberling, B., Eskelinen, A., Forbes, B. C., Frei, E. R., Iturrate-Garcia, M., Good, M. K., Grau, O., Green, P., Greve, M., Grogan, P., Haider, S., Hájek, T., Hallinger, M., Happonen, K., Harper, K. A., Heijmans, M. M. P. D., Henry, G. H. R., Hermanutz, L., Hewitt, R. E., Hollister, R. D., Hudson, J., Hülber, K., Iversen, C. M., Jaroszynska, F., Jiménez-Alfaro, B., Johnstone, J., Jorgensen, R. H., Kaarlejärvi, E., Klady, R., Klimešová, J., Korsten, A., Kuleza, S., Kulonen, A., Lamarque, L. J., Lantz, T., Lavalle, A., Lembrechts, J. J., Lévesque, E., Little, C. J., Luoto, M., Macek, P., Mack, M. C., Mathakutha, R., Michelsen, A., Milbau, A., Molau, U., Morgan, J. W., Mörsdorf, M. A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Pickering, C., Prevéy, J. S., Rixen, C., Rumpf, S. B., Schaepman-Strub, G., Semenchuk, P., Shetti, R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Street, L. E., Suding, K., Tape, K. D., Tomaselli, M., Trant, A., Treier, U. A., Tremblay, J. P., Tremblay, M., Venn, S., Virkkala, A. M., Vowles, T., Weijers, S., Wilmking, M., Wipf, S., Zamin, T., Bjorkman, A. D., Myers-Smith, I. H., Elmendorf, S. C., Normand, S., Thomas, H. J. D., Alatalo, J. M., Alexander, H., Anadon-Rosell, A., Angers-Blondin, S., Bai, Y., Baruah, G., te Beest, M., Berner, L., Björk, R. G., Blok, D., Bruelheide, H., Buchwal, A., Buras, A., Carbognani, M., Christie, K., Collier, L. S., Cooper, E. J., Cornelissen, J. H. C., Dickinson, K. J. M., Dullinger, S., Elberling, B., Eskelinen, A., Forbes, B. C., Frei, E. R., Iturrate-Garcia, M., Good, M. K., Grau, O., Green, P., Greve, M., Grogan, P., Haider, S., Hájek, T., Hallinger, M., Happonen, K., Harper, K. A., Heijmans, M. M. P. D., Henry, G. H. R., Hermanutz, L., Hewitt, R. E., Hollister, R. D., Hudson, J., Hülber, K., Iversen, C. M., Jaroszynska, F., Jiménez-Alfaro, B., Johnstone, J., Jorgensen, R. H., Kaarlejärvi, E., Klady, R., Klimešová, J., Korsten, A., Kuleza, S., Kulonen, A., Lamarque, L. J., Lantz, T., Lavalle, A., Lembrechts, J. J., Lévesque, E., Little, C. J., Luoto, M., Macek, P., Mack, M. C., Mathakutha, R., Michelsen, A., Milbau, A., Molau, U., Morgan, J. W., Mörsdorf, M. A., Nabe-Nielsen, J., Nielsen, S. S., Ninot, J. M., Oberbauer, S. F., Olofsson, J., Onipchenko, V. G., Petraglia, A., Pickering, C., Prevéy, J. S., Rixen, C., Rumpf, S. B., Schaepman-Strub, G., Semenchuk, P., Shetti, R., Soudzilovskaia, N. A., Spasojevic, M. J., Speed, J. D. M., Street, L. E., Suding, K., Tape, K. D., Tomaselli, M., Trant, A., Treier, U. A., Tremblay, J. P., Tremblay, M., Venn, S., Virkkala, A. M., Vowles, T., Weijers, S., Wilmking, M., Wipf, S., and Zamin, T.

Abstract

Motivation: The Tundra Trait Team (TTT) database includes field-based measurements of key traits related to plant form and function at multiple sites across the tundra biome. This dataset can be used to address theoretical questions about plant strategy and trade-offs, trait–environment relationships and environmental filtering, and trait variation across spatial scales, to validate satellite data, and to inform Earth system model parameters. Main types of variable contained: The database contains 91,970 measurements of 18 plant traits. The most frequently measured traits (> 1,000 observations each) include plant height, leaf area, specific leaf area, leaf fresh and dry mass, leaf dry matter content, leaf nitrogen, carbon and phosphorus content, leaf C:N and N:P, seed mass, and stem specific density. Spatial location and grain: Measurements were collected in tundra habitats in both the Northern and Southern Hemispheres, including Arctic sites in Alaska, Canada, Greenland, Fennoscandia and Siberia, alpine sites in the European Alps, Colorado Rockies, Caucasus, Ural Mountains, Pyrenees, Australian Alps, and Central Otago Mountains (New Zealand), and sub-Antarctic Marion Island. More than 99% of observations are georeferenced. Time period and grain: All data were collected between 1964 and 2018. A small number of sites have repeated trait measurements at two or more time periods. Major taxa and level of measurement: Trait measurements were made on 978 terrestrial vascular plant species growing in tundra habitats. Most observations are on individuals (86%), while the remainder represent plot or site means or maximums per species. Software format: csv file and GitHub repository with data cleaning scripts in R; contribution to TRY plant trait database (www.try-db.org) to be included in the next version release.

Published
2018

43. The Structure of Tn5

Author

Reznikoff, W. S., Rothstein, S. J., Jorgensen, R. A., Johnson, R. C., Yin, J. C. P., Levy, Stuart B., editor, Clowes, Royston C., editor, and Koenig, Ellen L., editor

Published
1981
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49. Progressive introgression between Brassica napus (oilseed rape) and B. rapa

Author

Hansen, L. B., Siegismund, H. R., and Jorgensen, R. B.

Subjects
Chloroplasts -- Genetic aspects, Hybridization -- Genetic aspects, DNA -- Genetic aspects, Rape (Plant) -- Genetic aspects, Heredity -- Research, Heredity -- Genetic aspects, Biological sciences
Abstract

Research has been conducted on introgression between oilseed rape and Brassica rapa. The authors have investigated various offspring from maternal plants from the introgressed population via the use of AFLP markers in the effort to describe the progress of this introgression, and they report the high outcrossing rate of the introgressed maternal plants.

Published
2003

50. Enlivening STEM education through school-community partnerships

Author

Jorgensen, R, Larkin, K, Tytler, R, Symington, D, Williams, G, White, P, Jorgensen, R, Larkin, K, Tytler, R, Symington, D, Williams, G, and White, P

Abstract

A major response to the growing concern with diminishing engagement and participation of students in STEM pathways, in Australia and internationally, has been the involvement of the STEM community in school outreach activities. In Australia there has been a proliferation of links between scientists and schools, with the aim of engaging students in authentic activities and providing models of what STEM work pathways might entail. This chapter will draw on a series of projects studying partnerships between the professional science/mathematics communities and schools, to explore a range of partnership models, the experience and outcomes for students and teachers, and challenges for crossing the boundary between school and STEM professional communities. Such school/STEM community partnerships are particularly suited to studies related to environmental and sustainability issues, a focus explored in the chapter. Further, we will draw on a recent evaluation of the Australia-wide, CSIRO-led Scientists and Mathematicians in Schools (SMiS) program. That study provided insight into the use and outcomes of the SMiS model. We will explore some of the challenges of working across the school-STEM professional practice boundary, implications for curriculum, and differences in partnerships for mathematics compared to science.

Published
2017

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