88 results on '"Jose Antonio Garrido"'
Search Results
2. Overcoming the Size Limit of First Principles Molecular Dynamics Simulations with an In-Distribution Substructure Embedding Active Learner
- Author
-
Kong, Lingyu, Li, Jielan, Sun, Lixin, Yang, Han, Hao, Hongxia, Chen, Chi, Artrith, Nongnuch, Torres, Jose Antonio Garrido, Lu, Ziheng, and Zhou, Yichi
- Subjects
Condensed Matter - Materials Science ,Physics - Computational Physics - Abstract
Large-scale first principles molecular dynamics are crucial for simulating complex processes in chemical, biomedical, and materials sciences. However, the unfavorable time complexity with respect to system sizes leads to prohibitive computational costs when the simulation contains over a few hundred atoms in practice. We present an In-Distribution substructure Embedding Active Learner (IDEAL) to enable efficient simulation of large complex systems with quantum accuracy by maintaining a machine learning force field (MLFF) as an accurate surrogate to the first principles methods. By extracting high-uncertainty substructures into low-uncertainty atom environments, the active learner is allowed to concentrate on and learn from small substructures of interest rather than carrying out intractable quantum chemical computations on large structures. IDEAL is benchmarked on various systems and shows sub-linear complexity, accelerating the simulation thousands of times compared with conventional active learning and millions of times compared with pure first principles simulations. To demonstrate the capability of IDEAL in practical applications, we simulated a polycrystalline lithium system composed of one million atoms and the full ammonia formation process in a Haber-Bosch reaction on a 3-nm Iridium nanoparticle catalyst on a computing node comprising one single A100 GPU and 24 CPU cores.
- Published
- 2023
3. DNA Sequencing Sensors: An Overview
- Author
-
Jose Antonio Garrido-Cardenas, Federico Garcia-Maroto, Jose Antonio Alvarez-Bermejo, and Francisco Manzano-Agugliaro
- Subjects
DNA sequencing ,next generation sequencing (NGS) ,pyrosequencing ,fluorescence ,semiconductor ,nanopore ,Chemical technology ,TP1-1185 - Abstract
The first sequencing of a complete genome was published forty years ago by the double Nobel Prize in Chemistry winner Frederick Sanger. That corresponded to the small sized genome of a bacteriophage, but since then there have been many complex organisms whose DNA have been sequenced. This was possible thanks to continuous advances in the fields of biochemistry and molecular genetics, but also in other areas such as nanotechnology and computing. Nowadays, sequencing sensors based on genetic material have little to do with those used by Sanger. The emergence of mass sequencing sensors, or new generation sequencing (NGS) meant a quantitative leap both in the volume of genetic material that was able to be sequenced in each trial, as well as in the time per run and its cost. One can envisage that incoming technologies, already known as fourth generation sequencing, will continue to cheapen the trials by increasing DNA reading lengths in each run. All of this would be impossible without sensors and detection systems becoming smaller and more precise. This article provides a comprehensive overview on sensors for DNA sequencing developed within the last 40 years.
- Published
- 2017
- Full Text
- View/download PDF
4. Data-driven Approach to Parameterize SCAN+U for an Accurate Description of 3d Transition Metal Oxide Thermochemistry
- Author
-
Artrith, Nongnuch, Torres, José Antonio Garrido, Urban, Alexander, and Hybertsen, Mark S.
- Subjects
Condensed Matter - Materials Science - Abstract
Semi-local DFT methods exhibit significant errors for the phase diagrams of transition-metal oxides that are caused by an incorrect description of molecular oxygen and the large self-interaction error in materials with strongly localized electronic orbitals. Empirical and semiempirical corrections based on the DFT+U method can reduce these errors, but the parameterization and validation of the correction terms remains an on-going challenge. We develop a systematic methodology to determine the parameters and to statistically assess the results by considering thermochemical data across a set of transition metal compounds. We consider three interconnected levels of correction terms: (1) a constant oxygen binding correction, (2) Hubbard-U correction, and (3) DFT/DFT+U compatibility correction. The parameterization is expressed as a unified optimization problem. We demonstrate this approach for 3d transition metal oxides, considering a target set of binary and ternary oxides. With a total of 37 measured formation enthalpies taken from the literature, the dataset is augmented by the reaction energies of 1,710 unique reactions that were derived from the formation energies by systematic enumeration. To ensure a balanced dataset across the available data, the reactions were grouped by their similarity using clustering and suitably weighted. The parameterization is validated using leave-one-out cross-validation (CV), a standard technique for the validation of statistical models. We apply the methodology to the SCAN density functional. Based on the CV score, the error of binary (ternary) oxide formation energies is reduced by 40% (75%) to 0.10 (0.03) eV/atom. The method and tools demonstrated here can be applied to other classes of materials or to parameterize the corrections to optimize DFT+U performance for other target physical properties., Comment: 49 pages, 8 figures, 1 table, 6 SI figure, 5 SI tables
- Published
- 2021
- Full Text
- View/download PDF
5. Active Learning Accelerated Discovery of Stable Iridium Oxide Polymorphs for the Oxygen Evolution Reaction
- Author
-
Flores, Raul A, Paolucci, Christopher, Winther, Kirsten T, Jain, Ankit, Torres, Jose Antonio Garrido, Aykol, Muratahan, Montoya, Joseph, Nørskov, Jens K, Bajdich, Michal, and Bligaard, Thomas
- Subjects
Affordable and Clean Energy ,Chemical Sciences ,Engineering ,Materials - Abstract
The discovery of high-performing and stable materials for sustainable energy applications is a pressing goal in catalysis and materials science. Understanding the relationship between a material's structure and functionality is an important step in the process, such that viable polymorphs for a given chemical composition need to be identified. Machine-learning-based surrogate models have the potential to accelerate the search for polymorphs that target specific applications. Herein, we report a readily generalizable active-learning (AL) accelerated algorithm for identification of electrochemically stable iridium oxide polymorphs of IrO2 and IrO3. The search is coupled to a subsequent analysis of the electrochemical stability of the discovered structures for the acidic oxygen evolution reaction (OER). Structural candidates are generated by identifying all 956 structurally unique AB2 and AB3 prototypes in existing materials databases (more than 38000). Next, using an active learning approach, we find 196 IrO2 polymorphs within the thermodynamic amorphous synthesizability limit and reaffirm the global stability of the rutile structure. We find 75 synthesizable IrO3 polymorphs and report a previously unknown FeF3-type structure as the most stable, termed α-IrO3. To test the algorithms performance, we compare to a random search of the candidate space and report at least a 2-fold increase in the rate of discovery. Additionally, the AL approach can acquire the most stable polymorphs of IrO2 and IrO3 with fewer than 30 density functional theory optimizations. Analysis of the structural properties of the discovered polymorphs reveals that octahedral local coordination environments are preferred for nearly all low-energy structures. Subsequent Pourbaix Ir-H2O analysis shows that α-IrO3 is the globally stable solid phase under acidic OER conditions and supersedes the stability of rutile IrO2. Calculation of theoretical OER surface activities reveal ideal weaker binding of the OER intermediates on α-IrO3 than on any other considered iridium oxide. We emphasize that the proposed AL algorithm can be easily generalized to search for any binary metal oxide structure with a defined stoichiometry.
- Published
- 2020
6. Hybrid Flexible NFC Sensor on Paper
- Author
-
Silvia Conti, Francesco Nepa, Stefano Di Pascoli, Irene Brunetti, Lorenzo Pimpolari, Xiuju Song, Khaled Parvez, Hamed Javanbakht Lomeri, Francesca De Rossi, Giulia Lucarelli, Giuseppina Polino, Thomas Brown, Laura Ferrer Pascual, María del Pilar Bernícola, Elena del Corro, Enrique Gonzalez Marin, Sandy Sanchez, Anders Hagfeldt, Christian Callegari, Francesco Pieri, Massimo Macucci, Michele Massaro, Giuseppe Iannaccone, Jose Antonio Garrido, Francesca Brunetti, Cinzia Casiraghi, and Gianluca Fiori
- Subjects
Settore ING-IND/33 - Sistemi Elettrici per L'Energia - Published
- 2023
- Full Text
- View/download PDF
7. Physics-based bias-dependent compact modeling of 1/f noise in single- to few-layer 2D-FETs
- Author
-
Nikolaos Mavredakis, Anibal Pacheco-Sanchez, Md Hasibul Alam, Anton Guimerà-Brunet, Javier Martinez, Jose Antonio Garrido, Deji Akinwande, and David Jiménez
- Subjects
Condensed Matter - Mesoscale and Nanoscale Physics ,Mesoscale and Nanoscale Physics (cond-mat.mes-hall) ,FOS: Physical sciences ,General Materials Science - Abstract
1/f noise is a critical figure of merit for the performance of transistors and circuits. For two-dimensional devices (2D-FETs), and especially for applications in the GHz range where short-channel FETs are required, velocity saturation (VS) effect can result in the reduction of 1/f noise at high longitudinal electric fields. A new physics-based compact model is for the first time introduced for single- to few- layer 2D-FETs in this study, precisely validating 1/f noise experiments for various types of devices. The proposed model mainly accounts for the measured 1/f noise bias dependence as the latter is defined by different physical mechanisms. Thus, analytical expressions are derived, valid in all regions of operation in contrast to conventional approaches available in literature so far, accounting for carrier number fluctuation (DN), mobility fluctuation (Dmu}) and contact resistance (DR) effects based on the underlying physics that rules these devices. DN mechanism due to trapping/detrapping together with an intense Coulomb scattering effect, dominates 1/f noise from medium to strong accumulation region while Dmu, is also demonstrated to modestly contribute in subthreshold region. DR can also be significant in very high carrier density. The VS induced reduction of 1/f noise measurements at high electric fields, is also remarkably captured by the model. The physical validity of the model can also assist in extracting credible conclusions when conducting comparisons between experimental data from devices with different materials or dielectrics., Nanoscale, 2023, Advance Article
- Published
- 2023
- Full Text
- View/download PDF
8. Highly Active Bifunctional Oxygen Electrocatalytic Sites Realized in Ceria–Functionalized Graphene
- Author
-
Simranjit Grewal, Angela Macedo Andrade, Ziqi Liu, Jose Antonio Garrido Torres, Art J. Nelson, Ambarish Kulkarni, Michal Bajdich, and Min Hwan Lee
- Published
- 2020
- Full Text
- View/download PDF
9. Concrete technology. Chapter 2: Concrete Materials
- Author
-
Sleyther Arturo De La Cruz Vega, Cristian Milton Mendoza Flores, Pablo Adrian Pezo Morales, Jose Antonio Garrido Oyola, Kevin Arturo Ascoy Flores, and Robert Edinson Suclupe Sandoval
- Abstract
The following book chapter presents the essential components of concrete, being a material that can acquire any shape in the liquid state and is very resistant in the hardened state as well as being aesthetic to be used in a diversity of applications. References [1]A. Garófalo, “Evaluación físico-química de los cementos a partir de la correlación de sus propiedades asociadas con la producción de hormigón”, escuela superior politécnica del Litoral, Ecuador, 2015. [2]AFCP, “La industria del cemento y la sostenibilidad”, Argentina, 2014. [3]ASTM, “Especificación normalizada para cemento Portland C 150-07”, Estados unidos, 2007. [4]E. Riva, “Materiales para el concreto”, Ed. ICG, 3era edición, Lima, 2000. [5]Indecopi, “Norma Técnica Peruana NTP 334.001”, Lima, Perú ,2001. [6]P. Aching and W. Del Castillo, “Influencia del plastificante reductor de agua sika-cem en el concreto cemento arena-Iquitos, 2018”, tesis, Universidad científica del Perú, Loreto, Peru, 2018. [7]P. Valera, “Influencia de las propiedades físico –químicas del agua del río Shilcayo en la resistencia del concreto f´c= 210 kg/cm2, Tarapoto-2018”, tesis, Universidad Cesar Vallejo, Tarapoto, Perú. [8]R. Salamanca, “Aplicación del cemento portland y los cementos adicionados”, ciencia e ingeniería Neogranadina, no. 10, pp. 33-38, 2001. [9]S. Laura, “Diseño de mezclas de concreto”, Universidad Nacional del Altiplano, Puno, Perú, 2006.
- Published
- 2022
- Full Text
- View/download PDF
10. A One Health approach revealed the long-term role of Mycobacterium caprae as the hidden cause of human tuberculosis in a region of Spain, 2003 to 2022
- Author
-
Miguel Martínez-Lirola, Marta Herranz, Sergio Buenestado Serrano, Cristina Rodríguez-Grande, Eva Dominguez Inarra, Jose Antonio Garrido-Cárdenas, Ana María Correa Ruiz, María Pilar Bermúdez, Manuel Causse del Río, Verónica González Galán, Julia Liró Armenteros, Jose María Viudez Martínez, Silvia Vallejo-Godoy, Ana Belén Esteban García, María Teresa Cabezas Fernández, Patricia Muñoz, Laura Pérez Lago, and Darío García de Viedma
- Subjects
Epidemiology ,Virology ,Public Health, Environmental and Occupational Health - Abstract
Introduction Mycobacterium caprae is a member of the Mycobacterium tuberculosis complex (MTBC) not routinely identified to species level. It lacks specific clinical features of presentation and may therefore not be identified as the causative agent of tuberculosis. Use of whole genome sequencing (WGS) in the investigation of a family microepidemic of tuberculosis in Almería, Spain, unexpectedly identified the involvement of M. caprae. Aim We aimed to evaluate the presence of additional unidentified M. caprae cases and to determine the magnitude of this occurrence. Methods First-line characterisation of the MTBC isolates was done by MIRU-VNTR, followed by WGS. Human and animal M. caprae isolates were integrated in the analysis. Results A comprehensive One Health strategy allowed us to (i) detect other 11 M. caprae infections in humans in a period of 18 years, (ii) systematically analyse M. caprae infections on an epidemiologically related goat farm and (iii) geographically expand the study by including 16 M. caprae isolates from other provinces. Integrative genomic analysis of 41 human and animal M. caprae isolates showed a high diversity of strains. The animal isolates’ diversity was compatible with long-term infection, and close genomic relationships existed between isolates from goats on the farm and recent cases of M. caprae infection in humans. Discussion Zoonotic circulation of M. caprae strains had gone unnoticed for 18 years. Systematic characterisation of MTBC at species level and/or extended investigation of the possible sources of exposure in all tuberculosis cases would minimise the risk of overlooking similar zoonotic events.
- Published
- 2023
- Full Text
- View/download PDF
11. A Multi-Objective Active Learning Platform and Web App for Reaction Optimization
- Author
-
Jose Antonio Garrido Torres, Sii Hong Lau, Pranay Anchuri, Jason M. Stevens, Jose E. Tabora, Jun Li, Alina Borovika, Ryan P. Adams, and Abigail G. Doyle
- Subjects
Colloid and Surface Chemistry ,Humans ,Bayes Theorem ,General Chemistry ,Biochemistry ,Mobile Applications ,Catalysis ,Software - Abstract
We report the development of an open-source experimental design via Bayesian optimization platform for multi-objective reaction optimization. Using high-throughput experimentation (HTE) and virtual screening data sets containing high-dimensional continuous and discrete variables, we optimized the performance of the platform by fine-tuning the algorithm components such as reaction encodings, surrogate model parameters, and initialization techniques. Having established the framework, we applied the optimizer to real-world test scenarios for the simultaneous optimization of the reaction yield and enantioselectivity in a Ni/photoredox-catalyzed enantioselective cross-electrophile coupling of styrene oxide with two different aryl iodide substrates. Starting with no previous experimental data, the Bayesian optimizer identified reaction conditions that surpassed the previously human-driven optimization campaigns within 15 and 24 experiments, for each substrate, among 1728 possible configurations available in each optimization. To make the platform more accessible to nonexperts, we developed a graphical user interface (GUI) that can be accessed online through a web-based application and incorporated features such as condition modification on the fly and data visualization. This web application does not require software installation, removing any programming barrier to use the platform, which enables chemists to integrate Bayesian optimization routines into their everyday laboratory practices.
- Published
- 2022
12. A Multi-Objective Active Learning Platform and Web App for Reaction Optimization
- Author
-
Torres, Jose Antonio Garrido, primary, Lau, Sii Hong, additional, Anchuri, Pranay, additional, Stevens, Jason M., additional, Tabora, Jose E., additional, Li, Jun, additional, Borovika, Alina, additional, Adams, Ryan P., additional, and Doyle, Abigail G., additional
- Published
- 2022
- Full Text
- View/download PDF
13. Critical Analysis of Tools for Measuring Recovery-Oriented Practice in Mental Health Facilities: A Scoping Review
- Author
-
Josè Antonio Garrido-Cervera, María Isabel Ruiz-Granados, Antonio Ignacio Cuesta-Vargas, and Antonio José Sánchez-Guarnido
- Subjects
patient-reported experience measures (PREMs) ,mental health ,recovery-oriented services ,psychometric properties ,Medicine (General) ,R5-920 - Abstract
Background: To implement recovery-oriented practice, it is important to have instruments capable of evaluating such practice. A number of different questionnaires have been developed in recent years which measure recovery orientation in mental health services. Objective: To identify and analyze patient-reported experience measures (PREMs) reported in the literature that are related to recovery-oriented practice in mental health services. Methodology: This study followed the Joanna Briggs Institute methodology for scoping reviews. Searches were carried out in the Web of Science, CINAHL, Medline (via Pubmed), and SCOPUS databases and in grey literature repositories (Google Scholar, Opengrey, Dart-Europe, Teseo). Papers on recovery services for adults suffering from mental disorders (MDs) were included. Those focusing on addiction and intellectual disability care services were excluded. Results: Sixteen papers met the inclusion criteria. The selected PREMs mainly identified recovery-oriented systems, treatment, community integration and support as the dimensions addressed most frequently in questionnaires. The average number of items included in the questionnaires was found to be 54. With regard to psychometric properties, 62% of the papers evaluated reliability (internal consistency) and 56% provided some kind of evidence of validity. Conclusions: This review aims to give an overview of the existing instruments in the literature and to highlight the characteristics of each one of them. Several different PREMs exist which evaluate recovery-oriented practice. No instrument currently exists which could be described as a benchmark tool, but there are quite a few with good psychometric properties capable of producing data that are useful when evaluating clinical services.
- Published
- 2024
- Full Text
- View/download PDF
14. Plasmodium vivax Cysteine-Rich Protective Antigen Polymorphism at Exon-1 Shows Recombination and Signatures of Balancing Selection
- Author
-
Jose Antonio Garrido-Cardenas, José Cebrián-Carmona, Lilia González-Cerón, Concepción Mesa-Valle, Frida Santillán-Valenzuela, and Federico García-Maroto
- Subjects
0301 basic medicine ,Nonsynonymous substitution ,Linkage disequilibrium ,lcsh:QH426-470 ,balancing selection ,030231 tropical medicine ,Plasmodium vivax ,Balancing selection ,Article ,Nucleotide diversity ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,Southern Mexico ,Tajima’s D ,phylogenetic tree ,Genetics (clinical) ,Genetic diversity ,biology ,Haplotype ,genetic diversity ,biology.organism_classification ,Tajima's D ,pvcyrpa ,MK test ,lcsh:Genetics ,030104 developmental biology ,Cysteine-Rich Protective Antigen (CyRPA) ,merozoite protein - Abstract
Plasmodium vivax Cysteine-Rich Protective Antigen (CyRPA) is a merozoite protein participating in the parasite invasion of human reticulocytes. During natural P. vivax infection, antibody responses against PvCyRPA have been detected. In children, low anti-CyRPA antibody titers correlated with clinical protection, which suggests this protein as a potential vaccine candidate. This work analyzed the genetic and amino acid diversity of pvcyrpa in Mexican and global parasites. Consensus coding sequences of pvcyrpa were obtained from seven isolates. Other sequences were extracted from a repository. Maximum likelihood phylogenetic trees, genetic diversity parameters, linkage disequilibrium (LD), and neutrality tests were analyzed, and the potential amino acid polymorphism participation in B-cell epitopes was investigated. In 22 sequences from Southern Mexico, two synonymous and 21 nonsynonymous mutations defined nine private haplotypes. These parasites had the highest LD-R2 index and the lowest nucleotide diversity compared to isolates from South America or Asia. The nucleotide diversity and Tajima&rsquo, s D values varied across the coding gene. The exon-1 sequence had greater diversity and Rm values than those of exon-2. Exon-1 had significant positive values for Tajima&rsquo, s D, &beta, &alpha, values, and for the Z (HA: dN >, dS) and MK tests. These patterns were similar for parasites of different origin. The polymorphic amino acid residues at PvCyRPA resembled the conformational B-cell peptides reported in PfCyRPA. Diversity at pvcyrpa exon-1 is caused by mutation and recombination. This seems to be maintained by balancing selection, likely due to selective immune pressure, all of which merit further study.
- Published
- 2021
15. Analysis of World Research on Grafting in Horticultural Plants
- Author
-
Francisco Camacho-Ferre, Luis J. Belmonte-Ureña, and Jose Antonio Garrido-Cardenas
- Subjects
Horticulture ,bibliometric analysis ,horticulture ,plants ,scientific research ,vegetable grafting ,lcsh:SB1-1110 ,Business ,lcsh:Plant culture ,Grafting - Abstract
The research on grafting in horticultural plants has increased in recent years due to the benefits of grafting on disease control, productivity, and fruit quality. This study analyzes the scientific production on grafting in horticultural plants, using bibliometric techniques with the objective of obtaining a vision of the characteristics of the work carried out in the world on this subject. The worldwide evolution of research in this field was analyzed from 1979 to 2018 using a bibliometric analysis of 1376 articles. The analysis provided evidence of scientific production of authors, institutions, and countries. The results showed a growing interest on grafting in horticultural plants, mainly in the past decade when 73% of the total analyzed articles were published. The most productive subject area was Agricultural and Biological. The most productive journal was Scientia Horticulturae, and the one that obtained highest number of citations was Plant Physiology. The most cited authors per article were Colla, Roupahel, and Cardarelli. The most prolific institution was Agricultural Research Organization of Israel. China, United States, and Spain were the countries that published the most articles. The countries with the highest percentage of international collaboration were Germany and United Kingdom.
- Published
- 2019
16. A whole-food approach to the in vitro assessment of the antitumor activity of gazpacho
- Author
-
María José González-Fernández, Maria Jesus Aznar-Garcia, Rebeca P. Ramos-Bueno, Jose Antonio Garrido-Cardenas, Huda Khaldi, and Pablo Campra
- Subjects
Programmed cell death ,Cell Survival ,030309 nutrition & dietetics ,Phytochemicals ,Apoptosis ,03 medical and health sciences ,0404 agricultural biotechnology ,Cyclin D1 ,Solanum lycopersicum ,Vegetables ,Anticarcinogenic Agents ,Humans ,Cytotoxicity ,Caspase ,Cell Proliferation ,bcl-2-Associated X Protein ,Caspase 7 ,chemistry.chemical_classification ,0303 health sciences ,biology ,Caspase 3 ,04 agricultural and veterinary sciences ,040401 food science ,In vitro ,Enzyme ,Gene Expression Regulation ,Proto-Oncogene Proteins c-bcl-2 ,chemistry ,Biochemistry ,biology.protein ,Whole food ,Tumor Suppressor Protein p53 ,HT29 Cells ,Food Science - Abstract
Gazpacho is a traditional cold soup of the Mediterranean diet consisting of a main base of fresh pureed tomato and other vegetables. Tomato and tomato products have demonstrated chemopreventive activity against several types of cancer through in vitro studies, and in animal and clinical research. Here we have applied a whole-food approach for the preclinical assessment of the antitumor potential of gazpacho. Colon cancer cells (HT-29) were exposed to growing concentrations of gazpacho previously digested in vitro to simulate the delivery of bioactive molecules to colon cells after food consumption. The cytotoxicity of gazpacho ingredients was also tested in independent experiments. Programmed cell death by apoptosis was detected by using a multiparametric analysis that combines image-based bright-field and fluorescence cytometry, intracellular ATP level determination and enzymatic activity of caspase-3/7. Modulation of gene expression of key regulatory genes (p53, Bcl-2, BAX, and cyclin D1) was also investigated. Our cytotoxicity data showed that in vitro digestion of samples allowed the delivery of bioactive levels of antitumor phytochemicals to cultured cells. Controlled experiments showed significant repetitive dose and time-response cytotoxicity of gazpacho. Gazpacho digestates caused net cell death of cultures suggesting synergic activity among phytochemicals from its vegetable ingredients. Multiparametric and genetic analyses showed that gazpacho digestates can trigger colon cancer cells death by apoptosis through the activation of caspase cascade. Our results show that coupled in vitro methodology employed can be applied to investigate the antitumor potential of complex food matrixes or combinations of foods in the diet.
- Published
- 2019
- Full Text
- View/download PDF
17. Symmetry-resolved CO desorption and oxidation dynamics on O/Ru(0001) probed at the C K-edge by ultrafast x-ray spectroscopy
- Author
-
Jerry LaRue, Boyang Liu, Gabriel L. S. Rodrigues, Chang Liu, Jose Antonio Garrido Torres, Simon Schreck, Elias Diesen, Matthew Weston, Hirohito Ogasawara, Fivos Perakis, Martina Dell’Angela, Flavio Capotondi, Devon Ball, Conner Carnahan, Gary Zeri, Luca Giannessi, Emanuele Pedersoli, Denys Naumenko, Peter Amann, Ivaylo Nikolov, Lorenzo Raimondi, Carlo Spezzani, Martin Beye, Johannes Voss, Hsin-Yi Wang, Filippo Cavalca, Jörgen Gladh, Sergey Koroidov, Frank Abild-Pedersen, Manuel Kolb, Piter S. Miedema, Roberto Costantini, Tony F. Heinz, Alan C. Luntz, Lars G. M. Pettersson, and Anders Nilsson
- Subjects
General Physics and Astronomy ,ddc:530 ,Physical and Theoretical Chemistry - Abstract
The journal of chemical physics 157(16), 164705 (2022). doi:10.1063/5.0114399, We report on carbon monoxide desorption and oxidation induced by 400 nm femtosecond laser excitation on the O/Ru(0001) surface probed by time-resolved x-ray absorption spectroscopy (TR-XAS) at the carbon K-edge. The experiments were performed under constant background pressures of CO (6 × 10$^{−8}$ Torr) and O$_2$ (3 × 10$^{−8}$ Torr). Under these conditions, we detect two transient CO species with narrow 2$π^*$ peaks, suggesting little 2π* interaction with the surface. Based on polarization measurements, we find that these two species have opposing orientations: (1) CO favoring a more perpendicular orientation and (2) CO favoring a more parallel orientation with respect to the surface. We also directly detect gas-phase CO2 using a mass spectrometer and observe weak signatures of bent adsorbed CO2 at slightly higher x-ray energies than the 2$π^*$ region. These results are compared to previously reported TR-XAS results at the O K-edge, where the CO background pressure was three times lower (2 × 10$^{−8}$ Torr) while maintaining the same O$_2$ pressure. At the lower CO pressure, in the CO 2$π^*$ region, we observed adsorbed CO and a distribution of OC–O bond lengths close to the CO oxidation transition state, with little indication of gas-like CO. The shift toward “gas-like” CO species may be explained by the higher CO exposure, which blocks O adsorption, decreasing O coverage and increasing CO coverage. These effects decrease the CO desorption barrier through dipole–dipole interaction while simultaneously increasing the CO oxidation barrier., Published by American Institute of Physics, Melville, NY
- Published
- 2022
- Full Text
- View/download PDF
18. Integrative transnational analysis to dissect tuberculosis transmission events along the migratory route from Africa to Europe
- Author
-
Darío García de Viedma, Begoña López, Estefanía Abascal, Pedro J Sola-Campoy, Andrea M. Cabibbe, Magdalena del Carmen Bonillo, Ana Valera, Anandi Martin, Sandra Rodríguez-Maus, Jose Antonio Garrido-Cardenas, Laura Pérez-Lago, Miguel Martínez-Lirola, Patricia Muñoz, Álvaro Chiner-Oms, Dick van Soolingen, Daniela Maria Cirillo, Iñaki Comas, Silvia Vallejo-Godoy, Vanessa Mathys, Rana Jajou, Instituto de Salud Carlos III, European Commission, Junta de Andalucía, Comas, Iñaki, Chiner-Oms, Álvaro, and UCL - SSS/IREC/CTMA - Centre de technologies moléculaires appliquées (plate-forme technologique)
- Subjects
medicine.medical_specialty ,Tuberculosis ,Genotype ,Disease cluster ,law.invention ,Mycobacterium tuberculosis ,03 medical and health sciences ,0302 clinical medicine ,law ,Epidemiology ,Trans-national ,Medicine ,Cluster Analysis ,Humans ,Transmission ,030212 general & internal medicine ,0303 health sciences ,biology ,030306 microbiology ,business.industry ,Strain (biology) ,transmission ,General Medicine ,biology.organism_classification ,medicine.disease ,trans-national ,Europe ,Transmission (mechanics) ,Horn of Africa ,Africa ,business ,Demography - Abstract
páginas, 4 figuras, 3 tablas, Background: Growing international migration has increased the complexity of tuberculosis transmission patterns. Italy's decision to close its borders in 2018 made of Spain the new European porte entrée for migration from the Horn of Africa (HA). In one of the first rescues of migrants from this region at the end of 2018, tuberculosis was diagnosed in eight subjects, mainly unaccompanied minors. Methods: Mycobacterium tuberculosis isolates from these recently arrived migrants were analysed by Mycobacterial Interspersed Repetitive-Unit/Variable-Number of Tandem Repeat (MIRU-VNTR) and subsequent whole genome sequencing (WGS) analysis. Data were compared with those from collections from other European countries receiving migrants from the HA and a strain-specific PCR was applied for a fast searching of common strains. Infections in a cellular model were performed to assess strain virulence. Results: MIRU-VNTR analysis allowed identifying an epidemiological cluster involving three of the eight cases from Somalia (0 single-nucleotide polymorphisms between isolates, HA cluster). Following detailed interviews revealed that two of these cases had shared the same migratory route in most of the trip and had spent a long time at a detention camp in Libya. To confirm potential en route transmission for the three cases, we searched the same strain in collections from other European countries receiving migrants from the HA. MIRU-VNTR, WGS and a strain-specific PCR for the HA strain were applied. The same strain was identified in 12 cases from Eritrea diagnosed soon after their arrival in 2018 to the Netherlands, Belgium and Italy. Intracellular replication rate of the strain did not reveal abnormal virulence. Conclusions: Our study suggests a potential en route transmission of a pan-susceptible strain, which caused at least 15 tuberculosis cases in Somalian and Eritrean migrants diagnosed in four different European countries., This work was supported by ERANet-LAC [ELAC2015/T08-0664] and Instituto de Salud Carlos III [AC16/00057, FIS15/01554, FIS13/01207, CP15/00075, PI19/00331] and cofounded by the European Regional Development Funds from the European Commission: ‘A way of making Europe’ and by Junta de Andalucia PI0488-2017.
- Published
- 2021
19. Origin of Enhanced Water Oxidation Activity in an Iridium Single Atom Catalyst
- Author
-
Yi Cui, Michal Bajdich, John Vinson, Jeffrey A. Reimer, Ryan C. Davis, Chengyu Song, Sirine C. Fakra, Haiyan Mao, Peter Ercius, Emily May Been, Constantine J Athanitis, Xiaoyun Yu, Jose Antonio Garrido Torres, Alessandro Gallo, Jing Tang, and Xueli Zheng
- Abstract
The efficiency of the synthesis of renewable fuels and feedstocks from electrical sources is limited at present by the sluggish water oxidation reaction. Single atom catalysts (SACs) with a controllable coordination environment and exceptional atom utilization efficiency open new paradigms towards designing high performance water oxidation catalysts. Here, using operando X-ray absorption spectroscopy measurements with calculations of spectra and electrochemical activity, we demonstrate that the origin of water oxidation activity of IrNiFe SACs is the presence of highly oxidized Ir single atom (Ir5.3+) in the NiFe oxyhydroxide under operating conditions. We show that the optimal water oxidation catalyst could be achieved by systematically increasing the oxidation state and modulating the coordination environments of the Ir active sites anchored atop the NiFe oxyhydroxide layers. Based on the proposed mechanism, we have successfully anchored Ir single-atom sites on NiFe oxyhydroxides (Ir0.1/Ni9Fe SAC) via a unique in situ cryogenic photochemical reduction (in situ Cryo-PCR) method which delivers an overpotential of 183 millivolts at 10 milliamperes per square centimeter and retains its performance following 20 hours of operation in 1 M KOH electrolyte, outperforming the reported catalysts and the commercial IrO2 catalysts. These findings open the avenue towards atomic-level understanding of oxygen evolution of catalytic centers under in operando condition.
- Published
- 2021
- Full Text
- View/download PDF
20. Active Learning Accelerated Discovery of Stable Iridium-oxide Polymorphs for the Oxygen Evolution Reaction
- Author
-
Thomas Bligaard, Michal Bajdich, Jens Kehlet Nørskov, Joseph H. Montoya, Muratahan Aykol, Jose Antonio Garrido Torres, Ankit Jain, Kirsten Winther, Christopher Paolucci, and Raul Flores
- Abstract
The discovery of high-performing and stable materials for sustainable energy applications is a pressing goal in catalysis and materials science. Understanding the relationship between a material's structure and functionality is an important step in the process, such that viable polymorphs for a given chemical composition need to be identified. Machine-learning based surrogate models have the potential to accelerate the search for polymorphs that target specific applications. Herein, we report a readily generalizable active-learning (AL) accelerated algorithm for identification of electrochemically stable iridium-oxide polymorphs of IrO2 and IrO3. The search is coupled to a subsequent analysis of the electrochemical stability of the discovered structures for the acidic oxygen evolution reaction (OER). Structural candidates are generated by identifying all 956 structurally unique AB2 and AB3 prototypes in existing materials databases (more than 38000). Next, using an active learning approach we are able to find 196 IrO2 polymorphs within the thermodynamic amorphous synthesizability limit and reaffirm the global stability of the rutile structure. We find 75 synthesizable IrO3 polymorphs and report a previously unknown FeF3-type structure as the most stable, termed α-IrO3. To test the algorithms performance, we compare to a random search of the candidate space and report at least a twofold increase in the rate of discovery. Additionally, the AL approach can acquire the most stable polymorphs of IrO2 and IrO3 with less than 30 density functional theory optimizations. Analysis of the structural properties of the discovered polymorphs reveals that octahedral local coordination environments are preferred for nearly all low energy structures. Subsequent Pourbaix Ir-H2O analysis shows that α-IrO3 is the globally stable solid phase under acidic OER conditions and supersedes the stability of rutile IrO2. Calculation of theoretical OER surface activities reveal ideal weaker binding of the OER intermediates on α-IrO3 than on any other considered iridium-oxide. We emphasize that the proposed AL algorithm can be easily generalized to search for any binary metal-oxide structure with a defined stoichiometry.
- Published
- 2020
- Full Text
- View/download PDF
21. Worldwide Research Trends on Medicinal Plants
- Author
-
Jose Antonio Garrido-Cardenas, Esther Salmerón-Manzano, and Francisco Manzano-Agugliaro
- Subjects
Modern medicine ,Health, Toxicology and Mutagenesis ,Scopus ,MEDLINE ,lcsh:Medicine ,Bibliometrics ,Iran ,traditional medicine ,Article ,drugs ,03 medical and health sciences ,0302 clinical medicine ,Neoplasms ,Animals ,Humans ,Social science ,Domestication ,Medicinal plants ,030304 developmental biology ,0303 health sciences ,Plants, Medicinal ,lcsh:R ,Public Health, Environmental and Occupational Health ,worldwide research ,Geography ,030220 oncology & carcinogenesis ,Plant species ,Medicine, Traditional ,bibliometrics ,medicinal plants - Abstract
The use of medicinal plants has been done since ancient times and may even be considered the origin of modern medicine. Compounds of plant origin have been and still are an important source of compounds for drugs. In this study a bibliometric study of all the works indexed in the Scopus database until 2019 has been carried out, analyzing more than 100,000 publications. On the one hand, the main countries, institutions and authors researching this topic have been identified, as well as their evolution over time. On the other hand, the links between the authors, the countries and the topics under research have been analyzed through the detection of communities. The last two periods, from 2009 to 2014 and from 2015 to 2019, have been examined in terms of research topics. It has been observed that the areas of study or clusters have been reduced, those of the last period being those engaged in unclassified drug, traditional medicine, cancer, in vivo study&mdash, antidiabetic activity, and animals&mdash, anti-inflammatory activity. In summary, it has been observed that the trend in global research is focused more on the search for new medicines or active compounds rather than on the cultivation or domestication of plant species with this demonstrated potential.
- Published
- 2020
22. The Contribution of Spanish Science to Patents: Medicine as Case of Study
- Author
-
Alfredo Alcayde, Francisco Manzano-Agugliaro, Mila Cascajares, and Jose Antonio Garrido-Cardenas
- Subjects
Index (economics) ,Health, Toxicology and Mutagenesis ,patents ,lcsh:Medicine ,Research and Development (R& ,Bibliometrics ,050905 science studies ,Citation impact ,social returns ,Article ,Scival ,Patents as Topic ,Research and Development ,bibliometrics ,Spain ,Political science ,Global health ,Relevance (law) ,Humans ,Research and Development (R&D) ,business.industry ,Prestige ,Research ,05 social sciences ,lcsh:R ,Public Health, Environmental and Occupational Health ,Subject (documents) ,Public relations ,D) ,Position (finance) ,Medicine ,0509 other social sciences ,050904 information & library sciences ,business - Abstract
Investments in research and development (R&, D) and innovation are expensive, and one wishes to be assured that there is positive feedback and to receive guidance on how to direct investments in the future. The social or economic benefits of investments in R&, D are of particular interest to policymakers. In this regard, public expense in research, especially through universities, is sometimes being questioned. This paper establishes a measure of how research in Spain, and specifically in its universities, is involved. In this study, we have analyzed all the literature cited in the period 1998&ndash, 2018 produced by Spanish institutions and which has been cited in at least one international patent, obtaining more than 40,000 publications from more than 160,000 different authors. The data have been surprisingly positive, showing that practically all public universities contribute to this subject and that there is a great deal of international collaboration, both in terms of the number of countries with which they collaborate and the prestige of the institutions involved. Regarding the specific scientific fields in which this collaboration is most relevant, biochemistry, genetics and molecular biology, and medicine together account for almost 40% of the total works. The topics most used by these publications were those of diseases or medical problems such as: Neoplams, Carcinoma, Alzheimer Disease, or human immunodeficiency virus (HIV-1). Oncology was according to the All Science Journal Classification (ASJC) the leading and central issue. Therefore, although the result of basic research is difficult to quantify, when it is observed that there is a return in fields such as medicine or global health, it can be said that it is well employed. In terms of journals from a purely bibliometric point of view, it has been observed that some journals do not have a great impact or relative position within their categories, but they do have a great relevance in this area of patent support. Therefore, it would be worthwhile to set up a rank for scientific journals based on the citations of patents, so the percentage of articles cited in patents with Field-Weighted Citation Impact (FWCI) >, 1, and as an indicator of scientific transfer from universities or research centres, the transference index in patents (TIP) is also proposed.
- Published
- 2020
23. Evaluation and optimization of a methodology for the long-term cryogenic storage of Tetradesmus obliquus at − 80 °C
- Author
-
Diego López Alonso, Xiaoyu Han, Jose Antonio Garrido-Cardenas, and Federico García-Maroto
- Subjects
Cryopreservation ,0303 health sciences ,Cryoprotectant ,Cell Survival ,030306 microbiology ,General Medicine ,Cell concentration ,Liquid nitrogen ,Tetradesmus obliquus ,Pulp and paper industry ,Applied Microbiology and Biotechnology ,Incubation period ,Cold Temperature ,03 medical and health sciences ,Cryoprotective Agents ,Chlorophyceae ,Reagent ,Microalgae ,Environmental science ,Statistical analysis ,030304 developmental biology ,Biotechnology - Abstract
Cryopreservation is a common methodology for long-term microalgae storage. Current cryopreservation methods are based on using diverse cryoprotectants and two-step cooling protocols, followed by sample storage at the temperature of liquid nitrogen (− 196 °C). However, the use of this methodology requires a continuous liquid N2 supply as well as facilities with dedicated equipment, which is not affordable for every laboratory. In our work, we report on the successful development of a simple and cost-effective method for the long-term cryogenic storage of Tetradesmus obliquus at temperatures (− 80 °C) used in commonly available deep freezers that are more readily accessible to laboratories. Two procedures were evaluated that were originally devised for other microalgae; this was followed by the optimization of critical parameters such as the sample’s microalgal concentration and the cryoprotectant reagent’s incubation time. Cell viability was monitored using the survival rates obtained by direct agar plating and the growth recovery times in liquid cultures. Viability-related variables were recorded following different storage times of up to 3 years. The main operational factors involved in the process (cell concentration, incubation time, and storage time) were statistically analyzed with regard to their influence on the survival rate. The statistical analysis showed interdependence (a two-factor interaction) between the cellular concentration and the cryoprotectant’s incubation time, on the one hand, and between the incubation time and the storage time on the other. Survival rates above 70% were obtained under optimized conditions after 3 months of storage, along with 20–35% viabilities after 3 years. These results open up the possibility of extending this method to other Scenedesmaceae, or even other microalgal species, and for its use in resource-limited laboratories.
- Published
- 2019
- Full Text
- View/download PDF
24. Microalgae research worldwide
- Author
-
Emilio Molina-Grima, Jose Antonio Garrido-Cardenas, Francisco Manzano-Agugliaro, and Francisco Gabriel Acién-Fernández
- Subjects
0106 biological sciences ,business.industry ,Industrial production ,Publications ,Biomass ,Distribution (economics) ,010501 environmental sciences ,Researchers ,Bibliometric ,01 natural sciences ,Agricultural economics ,Scientific productivity ,Geography ,Biofuel ,010608 biotechnology ,Journals ,business ,Agronomy and Crop Science ,Biotechnology ,0105 earth and related environmental sciences - Abstract
In this paper, worldwide research trends in the microalgae field are analyzed based on a bibliometric study. We have reviewed the number of publications and their distribution, as well as the most relevant journals and keywords, to determine the evolution and latest tendencies in this field. The results confirm that this is a fast-growing area in terms of the number of publications. The most relevant journals on this subject are Bioresource Technology and Algal Research. Although the majority of papers come out of the USA, the institutions with larger number of publications are actually located in China, France and Spain. The most frequently cited strains are Chlorella and Chlamydomonas. The main keywords that appear in over 1000 articles are generally related to microalgae cultivation applications such as ‘biomass, biofuel, and lipids’ while others are related to the methodology; for instance, ‘bioreactor’. Of all the keywords, ‘biomass’ stands out, as it appears in almost 20% of publications. Bibliographic analysis confirms that Microalgae Biotechnology is a very active field, where scientific productivity has exponentially increased over recent years in tandem with industrial production. Therefore, expectations are high in this field for the near future.
- Published
- 2018
- Full Text
- View/download PDF
25. A new approach for detection and quantification of microalgae in industrial-scale microalgal cultures
- Author
-
Claudia Sepulveda, Peter Beatrice-Lindner, Francisco Gabriel Acién-Fernández, and Jose Antonio Garrido-Cardenas
- Subjects
0106 biological sciences ,0301 basic medicine ,Identification ,Biomass ,01 natural sciences ,Applied Microbiology and Biotechnology ,DNA barcoding ,03 medical and health sciences ,Quantification ,Microalgae ,TaqMan ,DNA Barcoding, Taxonomic ,Industry ,Species identification ,Scenedesmus ,biology ,business.industry ,010604 marine biology & hydrobiology ,Industrial scale ,Taxonomic ,General Medicine ,Direct qPCR ,biology.organism_classification ,DNA extraction ,Scenedesmus almeriensis ,DNA Barcoding ,Biotechnology ,030104 developmental biology ,Genomic information ,business - Abstract
In industrial-scale microalgal cultures, non-target microalgae compete with the desired species for nutrients and CO2, thus reducing the growth rate of the target species and the quality of the produced biomass. Microalgae identification is generally considered a complicated issue; although, in the last few years, new molecular methods have helped to rectify this problem. Among the different techniques available, DNA barcoding has proven very useful in providing rapid, accurate, and automatable species identification; in this work, it is used to assess the genomic identity of the microalga species Scenedesmus sp. ‘almeriensis’, a common strain in industrial-scale cultures. Barcode markers rbcL and ITS1-5.8S-ITS2 were sequenced and the obtained genomic information was used to design a quantitative PCR assay to precisely quantify the S. almeriensis concentration in microalgal cultures of industrial interest. TaqMan chemistry was used to quantify down to 1 μg/L dry weight of S. almeriensis cells, including in the presence of concentrated mixed cultures of other microalgae. A simple direct qPCR approach was also investigated to avoid classic DNA extraction and to reduce total assay time to approximately 2 h. The objective was to design strain-specific tools able to confirm and quantify the presence of different strains in whatever microalgae culture so as to achieve maximal productivity and quality of the produced biomass.
- Published
- 2018
- Full Text
- View/download PDF
26. Genetic approach towards a vaccine against malaria
- Author
-
Jose Antonio Garrido-Cardenas, Francisco Manzano-Agugliaro, and Concepción Mesa-Valle
- Subjects
0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,Economic growth ,Biomedical Research ,Plasmodium falciparum ,Drug resistance ,Disease ,Biology ,03 medical and health sciences ,Medical microbiology ,Malaria Vaccines ,medicine ,Humans ,%22">Plasmodium ,Transmission (medicine) ,business.industry ,International health ,General Medicine ,medicine.disease ,Malaria ,030104 developmental biology ,Infectious Diseases ,Serial Publications ,business - Abstract
Malaria is a major concern for international health authorities. Millions of people contract it every year in the world due to a parasite of the Plasmodium genus. Due to the complexity of the parasite biology and genetics, there is currently no vaccine against the disease. However, due to the great resistance both to the medicines and to the insecticides used to combat the disease, it has become essential to obtain a vaccine as the necessary tool to prevent transmission and eliminate the disease. The bibliometric data indicate that interest in vaccines has been growing steadily since the 1980s. But nowadays, a powerful tool is used: the Plasmodium genome. This allows us to improve the fight against the disease. Knowing the sequences of the genes that favor the appearance of drug resistance, or those that encode for proteins with greater antigenic response, is a tool that can become fundamental. This article reviews the state of the art on vaccines and genetics, in the fight against malaria, and analyzes the fixed photo that the worldwide research on the disease poses.
- Published
- 2018
- Full Text
- View/download PDF
27. Origin of Enhanced Water Oxidation Activity in an Iridium Single Atom Catalyst
- Author
-
Zheng, Xueli, primary, Tang, Jing, primary, Gallo, Alessandro, primary, Torres, Jose Antonio Garrido, primary, Yu, Xiaoyun, primary, Athanitis, Constantine J, primary, Been, Emily May, primary, Ercius, Peter, primary, Mao, Haiyan, primary, Fakra, Sirine C., primary, Song, Chengyu, primary, Davis, Ryan C., primary, Reimer, Jeffrey A., primary, Vinson, John, primary, Bajdich, Michal, primary, and Cui, Yi, primary
- Published
- 2021
- Full Text
- View/download PDF
28. A Polyphasic Characterisation of Tetradesmus almeriensis sp. nov. (Chlorophyta: Scenedesmaceae)
- Author
-
Francisco Gabriel Acién, Lorenzo Carretero-Paulet, Cintia Gómez-Serrano, Saúl Blanco, Jose Antonio Garrido-Cardenas, and Sara Turiel
- Subjects
Acutodesmus ,Tetradesmus ,Chlorophyceae ,Bioengineering ,TP1-1185 ,Chlorophyta ,Biology ,Scenedesmus ,Genus ,Botany ,Chemical Engineering (miscellaneous) ,Scenedesmaceae ,QD1-999 ,new species ,Strain (chemistry) ,Phylogenetic tree ,Chemical technology ,Process Chemistry and Technology ,bioreactors ,biology.organism_classification ,Chemistry - Abstract
The microalga Tetradesmus almeriensis, previously known as Scenedesmus almeriensis, has been isolated and cultivated as a highly productive, fast-growing strain known as a natural source of different products of commercial interest, including bioactive compounds such as lutein. This strain produces up to 40 g·m−2·day−1 of lutein under optimal conditions and is highly recommendable for outdoor production in temperate and warm climates, showing maximal performance at temperatures up to 35 °C with no photo-inhibition taking place with irradiances greater than 1000 μE·m−2·s−1. Morphological and molecular data allow its assignment to the Chlorophycean genus Tetradesmus. The new species can be distinguished from similar Tetradesmus taxa due to its unique combination of features that are seen under light microscopy. We present herein a robust and comprehensive phylogenetic analysis of T. almeriensis, together with several additional Scenedesmaceae species, using a combination of maximum likelihood and Bayesian approaches. Our results confirm T. almeriensis as a distinct species consistently clustering with other Scenedesmaceae.
- Published
- 2021
- Full Text
- View/download PDF
29. Active Learning Accelerated Discovery of Stable Iridium-oxide Polymorphs for the Oxygen Evolution Reaction
- Author
-
Flores, Raul, primary, Paolucci, Christopher, primary, Winther, Kirsten, primary, Jain, Ankit, primary, Torres, Jose Antonio Garrido, primary, Aykol, Muratahan, primary, Montoya, Joseph H., primary, Nørskov, Jens Kehlet, primary, Bajdich, Michal, primary, and Bligaard, Thomas, primary
- Published
- 2020
- Full Text
- View/download PDF
30. Human parasitology worldwide research
- Author
-
Jose Antonio Garrido-Cardenas, Concepción Mesa-Valle, and Francisco Manzano-Agugliaro
- Subjects
0301 basic medicine ,Biomedical Research ,Medical entomology ,030231 tropical medicine ,Helminthiasis ,Biology ,03 medical and health sciences ,0302 clinical medicine ,Tropical Medicine ,medicine ,Animals ,Humans ,Social science ,Leishmaniasis ,Publications ,Scientific production ,Amebiasis ,Scientometrics ,medicine.disease ,Malaria ,030104 developmental biology ,Infectious Diseases ,Parasitology ,Animal Science and Zoology ,Toxoplasmosis - Abstract
In this article, the trends in human parasitology have been studied through the analysis of the number of publications in this area. The parameters studied were: number of articles, language, countries and institutions with the highest number of publications, and keywords with greater presence in the articles of human parasitology. The results of the analysis confirm the growing interest in this area, observing an exponential growth in the number of publications in the last decades. We also verified that the main country in terms of scientific production is the USA, although among the most important institutions, we find non-US centres such as the Oswaldo Cruz Foundation and the London School of Hygiene and Tropical Medicine. For observing the relative importance of the journals that publish articles in this specific topic, an index has been created based on theh-index of the journal with publications related to human parasitology and divided by every 100 items. This rank is led fist by ‘Journal of Medical Entomology’ closely followed by ‘Parasitology’. The analysis of the keywords allows to draw conclusions about the great importance of malaria in the current world research. A change in analytical methodology is also observed, and molecular techniques are now being imposed. These techniques, in the near future, have to influence in an improvement in the treatments and prevention of the diseases caused by parasites. Finally, it can be seen that diseases traditionally studied as helminthiasis and amebiasis are currently as well studied as others such as toxoplasmosis or leishmaniasis.
- Published
- 2017
- Full Text
- View/download PDF
31. Global Research on Plant Nematodes
- Author
-
Francisco Manzano-Agugliaro, Miguel Talavera, José Cebrián-Carmona, Jose Antonio Garrido-Cardenas, and Concepción Mesa-Valle
- Subjects
0106 biological sciences ,0303 health sciences ,bibliometric ,Meloidogyne ,business.industry ,Agroforestry ,lcsh:S ,Biological pest control ,phytoparasite ,Biology ,tomato ,01 natural sciences ,lcsh:Agriculture ,03 medical and health sciences ,Agriculture ,nematodes ,Scopus ,business ,Agronomy and Crop Science ,030304 developmental biology ,010606 plant biology & botany - Abstract
Background: The more than 4100 species of phytoparasitic nematodes are responsible for an estimated economic loss in the agricultural sector of nearly $125 billion annually. Knowing the main lines of research and concerns about nematodes that affect plants is fundamental. Methods: For this reason, an analysis using bibliometric data has been carried out, with the aim of tracing the state of world research in this field, as well as knowing the main lines of work, their priorities, and their evolution. Results: This will allow us to establish strategic lines for the future development of this research. Conclusions: The analysis has allowed us to detect that the interest in nematodes affecting plants has not stopped growing in the last decades, and that tomato, soybean, and potato crops are the ones that generate the most interest, as well as nematodes of the genus Meloidogyne and Globodera. Likewise, we have detected that the main lines of research in this field are focused on biological control and host&ndash, parasite interaction.
- Published
- 2020
32. Wastewater Treatment by Advanced Oxidation Process and Their Worldwide Research Trends
- Author
-
Francisco Manzano-Agugliaro, Jose Antonio Garrido-Cardenas, Belén Esteban-García, J.A. Sánchez-Pérez, and Ana Agüera
- Subjects
advanced oxidation process ,Resource (biology) ,Health, Toxicology and Mutagenesis ,Industrial Waste ,lcsh:Medicine ,02 engineering and technology ,Wastewater ,010501 environmental sciences ,concern emergent contaminant ,worldwide ,01 natural sciences ,Article ,Water Purification ,China ,microorganisms ,Environmental planning ,0105 earth and related environmental sciences ,reclaimed water ,Sustainable development ,Pollutant ,Bacteria ,Drinking Water ,Advanced oxidation process ,lcsh:R ,Public Health, Environmental and Occupational Health ,021001 nanoscience & nanotechnology ,Reclaimed water ,Environmental science ,Environmental Pollutants ,Sewage treatment ,Water Microbiology ,0210 nano-technology ,Oxidation-Reduction ,Water Pollutants, Chemical - Abstract
Background: Water is a scarce resource and is considered a fundamental pillar of sustainable development. The modern development of society requires more and more drinking water. For this cleaner wastewater, treatments are key factors. Among those that exist, advanced oxidation processes are being researched as one of the sustainable solutions. The main objective of this manuscript is to show the scientific advances in this field. Methods: In this paper, a systematic analysis of all the existing scientific works was carried out to verify the evolution of this line of research. Results: It was observed that the three main countries researching this field are China, Spain, and the USA. Regarding the scientific collaboration between countries, three clusters were detected&mdash, one of Spain, one of China and the USA, and one of Italy and France. The publications are grouped around three types of water: industrial, urban, and drinking. Regarding the research, 15 clusters identified from the keywords analyzed the advanced oxidation process (alone or combined with biological oxidation) with the type of wastewater and the target pollutant, removal of which is intended. Finally, the most important scientific communities or clusters detected in terms of the number of published articles were those related to the elimination of pollutants of biological origin, such as bacteria, and of industrial nature, such as pesticides or pharmaceutical products.
- Published
- 2019
33. MEASURING THE LEVEL OF IN-CLASS ATTENTION WITH A TELEGRAM-BASED TOOL: ZQUIZUALBOT
- Author
-
Esther Salmerón-Manzano, Alfredo Alcayde-García, Jose Antonio Garrido-Cardenas, Francisco G. Montoya, and Francisco Manzano-Agugliaro
- Subjects
Class (computer programming) ,Theoretical computer science ,Computer science - Published
- 2019
- Full Text
- View/download PDF
34. EVALUATION OF THE GENERIC SKILLS OF THE DEGREE IN MECHANICAL ENGINEERING AT THE UNIVERSITY OF ALMERIA
- Author
-
Esther Salmerón-Manzano, Alfredo Alcayde-García, Jose Antonio Garrido-Cardenas, Francisco Manzano-Agugliaro, and Javier López Martínez
- Subjects
Engineering ,biology ,business.industry ,biology.organism_classification ,business ,Civil engineering ,Almeria ,Degree (temperature) - Published
- 2019
- Full Text
- View/download PDF
35. Medium and long-term effects of low doses of Chlorpyrifos during the postnatal, preweaning developmental stage on sociability, dominance, gut microbiota and plasma metabolites
- Author
-
Miguel Morales-Navas, Ana Cristina Abreu, Maria Teresa Colomina, Laia Guardia-Escote, Fernando Sánchez-Santed, Ignacio Fernández, Luis Manuel Aguilera-Sáez, Jose Antonio Garrido-Cardenas, Estela Giménez, and Cristian Pérez-Fernández
- Subjects
Adult ,Insecticides ,Autism Spectrum Disorder ,Physiology ,010501 environmental sciences ,Gut flora ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,medicine ,Animals ,Humans ,030212 general & internal medicine ,Social Behavior ,0105 earth and related environmental sciences ,General Environmental Science ,Dominance (genetics) ,biology ,Organophosphate ,Novelty ,medicine.disease ,biology.organism_classification ,Social relation ,Gastrointestinal Microbiome ,Rats ,chemistry ,Autism spectrum disorder ,Chlorpyrifos ,Female ,Dysbiosis - Abstract
Autism spectrum disorder (ASD) is a complex neurodevelopmental pathology characterized by altered verbalizations, reduced social interaction behavior, and stereotypies. Environmental factors have been associated with its development. Some researchers have focused on pesticide exposure. Chlorpyrifos (CPF) is the most used Organophosphate. Previous developmental studies with CPF showed decreased, enhanced or no effect on social outcomes eminently in mice. The study of CPF exposure during preweaning stages on social behavior is sparse in mice and non-existent in rats. d stressors could be at the basis of ASD development, and around postnatal day 10 in the rat is equivalent to the human birthday in neurodevelopmental terms. We explored the effects of exposure to low doses (1mg/kg/mL/day) of CPF during this stage regarding: sociability, dominance gut microbiome and plasma metabolomic profile, since alterations in these systems have also been linked to ASD. There was a modest influence of CPF on social behavior in adulthood, with null effects during adolescence. Dominance and hierarchical status were not affected by exposure. Dominance status explained the significant reduction in reaction to social novelty observed on the sociability test. CPF induced a significant gut microbiome dysbiosis and triggered a hyperlipidemic, hypoglycemic/hypogluconeogenesis and a general altered cell energy production in females. These behavioral results in rats extend and complement previous studies with mice and show novel influences on gut metagenomics and plasma lipid profile and metabolomics, but do not stablish a relation between the exposure to CPF and the ASD phenotype. The effects of dominance status on reaction to social novelty have an important methodological meaning for future research on sociability.
- Published
- 2019
36. Global tuberculosis research and its future prospects
- Author
-
Miguel Martínez-Lirola, Jose Antonio Garrido-Cardenas, M.T. Cabezas-Fernández, Francisco Manzano-Agugliaro, and C. de Lamo-Sevilla
- Subjects
0301 basic medicine ,Microbiology (medical) ,Economic growth ,Tuberculosis ,Bibliometric analysis ,Biomedical Research ,Time Factors ,030106 microbiology ,Immunology ,Population ,Human immunodeficiency virus (HIV) ,Antitubercular Agents ,HIV Infections ,Disease ,medicine.disease_cause ,Global Health ,Microbiology ,Mycobacterium tuberculosis ,03 medical and health sciences ,Drug Resistance, Bacterial ,medicine ,Humans ,education ,education.field_of_study ,Infectious Disease Medicine ,biology ,Coinfection ,Bacteriology ,biology.organism_classification ,medicine.disease ,030104 developmental biology ,Infectious Diseases ,Geography ,Infectious disease (medical specialty) ,Bibliometrics ,Research Design ,Science policy ,Diffusion of Innovation ,Forecasting - Abstract
Tuberculosis is the infectious disease that causes the most deaths each year in the world. Around 25% of the population is estimated to be infected with, Mycobacterium tuberculosis, the bacteria that gives rise to the disease, and more than one and a half million people die each year from this cause. A rigorous bibliometric analysis has been developed around tuberculosis disease, and the most remarkable results are presented in this paper. It is observed that interest in tuberculosis is growing, and the control of its spread has become one of the main health priorities in the world, with the United States, the United Kingdom, and India, leading the research in this area. On the other hand, it has been observed that there are two main health concerns around the tuberculosis: drug-resistant tuberculosis and co-infection with HIV. Finally, conclusions are offered, playing a frontline role in science policy decisions and research performance evaluations.
- Published
- 2019
37. The state of global research on social work and disability
- Author
-
Francisco Manzano-Agugliaro, Jose Antonio Garrido-Cardenas, and Jesús Muyor-Rodríguez
- Subjects
Community and Home Care ,Social Work ,030505 public health ,Biomedical Research ,Social work ,media_common.quotation_subject ,Scientific production ,Subject (philosophy) ,Global Health ,03 medical and health sciences ,Psychiatry and Mental health ,0302 clinical medicine ,Work (electrical) ,State (polity) ,Bibliometrics ,Humans ,Engineering ethics ,Disabled Persons ,030212 general & internal medicine ,Sociology ,0305 other medical science ,Disability Studies ,media_common - Abstract
Two paradigms are used to define disability. On the one hand, the biological paradigm, which attends to a person's deficiencies and difficulties. And, on the other hand, the social, which does not treat disability as a pathology, but rather places the focus of interest on the deficient tools that society has to consider the capabilities of everyone. This article analyzes the scientific production on disability and social work, using bibliometric techniques and algorithms for the detection of communities, taking into account the current state of research worldwide. This analysis offers a holistic view of the characteristics of the work carried out in the world on this subject.
- Published
- 2019
38. GENERIC SKILLS ASSESSMENT OF THE BIOTECHNOLOGY DEGREE AT UNIVERSITY OF ALMERIA
- Author
-
Jose Antonio Garrido-Cardenas, Esther Salmerón-Manzano, Antonio Zapata-Sierra, and Francisco Manzano-Agugliaro
- Subjects
Agricultural science ,Geography ,biology ,biology.organism_classification ,Almeria ,Degree (temperature) - Published
- 2019
- Full Text
- View/download PDF
39. MASTER'S DEGREE IN AGRONOMIC ENGINEERING: GENERIC SKILLS ASSESSMENT AT UNIVERSITY OF ALMERIA
- Author
-
Antonio Zapata-Sierra, Francisco Manzano-Agugliaro, Jose Antonio Garrido-Cardenas, and Esther Salmerón-Manzano
- Subjects
Engineering ,Engineering management ,biology ,business.industry ,business ,biology.organism_classification ,Master s degree ,Almeria - Published
- 2019
- Full Text
- View/download PDF
40. First Report of Fusarium equiseti Causing Damping-Off Disease on Aleppo Pine in Algeria
- Author
-
F. Lazreg, Lakhdar Belabid, Eduardo Gallego, A. Elhaitoum, J. Sanchez, and Jose Antonio Garrido-Cardenas
- Subjects
Fusarium ,Damping off ,Plant Science ,Biology ,biology.organism_classification ,Conidium ,Horticulture ,Aleppo Pine ,Seedling ,Collar rot ,Botany ,Potato dextrose agar ,Agronomy and Crop Science ,Mycelium - Abstract
The Aleppo pine (Pinus halepensis Mill.) is a conifer native to the Mediterranean region. In 2008 and 2009, a survey of Aleppo pine seedling diseases was performed in three forest nurseries from Relizane, Sidi Bel Abbes, and Tlemcen provinces in northwestern Algeria. Aleppo pine seedlings showed symptoms of pre- and post-emergence damping-off disease, with an incidence of 64 to 77%. Four composite samples were taken from each location. Disinfested root and root collar segments, approximately 5 mm in length, were cultured on potato dextrose agar (PDA) and incubated at 25°C, and hyphal tips were transferred to PDA. Fusarium equiseti (Corda) Sacc. (teleomorph: Gibberella intricans Wollenw.) was identified from roots of two seedlings from the Sidi Bel Abbes nursery. Morphological identification was done according to Fusarium keys (2). PDA colonies with abundant, loosely floccose, whitish aerial mycelium and beige pigmentation were observed. Macroconidia with usually 5 to 6 septa, 31 to 45 μm long. A pronounced dorsiventral curvature, tapered and elongated apical cell, and prominent foot shape were observed. Microconidia were absent. Chlamydospores were produced in hyphae, most often intercalary, solitary, in pairs, frequently forming chains or clusters, globose (7 to 13 μm). To confirm the identity of this fungus, the internal transcribed spacer of F3RS1 and F19RS1 isolates of F. equiseti were amplified and sequenced using ITS1 and ITS4 primers (4), GenBank accession nos. JX114784 and JX114791, respectively. Those sequences bore 100% (HQ671182) similarity with sequences of F. equiseti in GenBank. Pathogenicity tests were performed to fulfill Koch's postulates. Inoculum was produced by adding a 5-mm-diameter plug from a 7-day-old CMA petri dish culture to a previously sterilized 500 ml flask (237.5 g sand, 12.5 g cornmeal, 80 ml sterile distilled water), shaken over 9 days at 25°C, and mixed with sterile sandy clay soil at 1:3 (v:v). Infested soil was then transferred to 500 ml pots, and 10 Aleppo pine seeds were planted per pot. A completely randomized design was used with three replicates per isolate and three control pots with a similar non-infested soil. After 1 month at 25°C the two tested isolates caused typical damping-off symptoms (collar rot) on seedlings and were re-isolated from recently infected tissues. The percentages of the inoculated plants that became infected were 59 to 65% among isolates (0% in control pots). To our knowledge, infection by F. equiseti is a first report on Aleppo pine in northwestern Algeria, Northern Africa, and globally, and on conifers in the Mediterranean region (1,3). In Algeria, F. equiseti is associated with black pepper (Piper nigrum L.) (3). These findings highlight the moderate impact of F. equiseti on the production of Aleppo seedling stock for reforestation activities in northwestern Algeria. References: (1) D. F. Farr and A. Y. Rossman. Fungal Databases, Systematic Mycology and Microbiology Laboratory. ARS, USDA, Beltsville, MD. Retrieved from http://nt.ars-grin.gov/fungaldatabases/ , February 20, 2013. (2) J. F. Leslie and B. A. Summerell. The Fusarium Laboratory Manual. Blackwell Publishing, Ames, IA, 2006. (3) D. W. Minter. Cybertruffle's Robigalia, Observations of Fungi and their Associated Organisms. Retrieved from http://www.cybertruffle.org.uk/robigalia/eng/ , February 20, 2013. (4) T. J. White et al. Page 315 in: PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, 1990.
- Published
- 2019
41. Active Learning Accelerated Discovery of Stable Iridium Oxide Polymorphs for the Oxygen Evolution Reaction
- Author
-
Flores, Raul A., Paolucci, Christopher, Winther, Kirsten T., Jain, Ankit, Torres, Jose Antonio Garrido, Aykol, Muratahan, Montoya, Joseph, Norskov, Jens K., Bajdich, Michal, Bligaard, Thomas, Flores, Raul A., Paolucci, Christopher, Winther, Kirsten T., Jain, Ankit, Torres, Jose Antonio Garrido, Aykol, Muratahan, Montoya, Joseph, Norskov, Jens K., Bajdich, Michal, and Bligaard, Thomas
- Abstract
The discovery of high-performing and stable materials for sustainable energy applications is a pressing goal in catalysis and materials science. Understanding the relationship between a material's structure and functionality is an important step in the process, such that viable polymorphs for a given chemical composition need to be identified. Machine-learning-based surrogate models have the potential to accelerate the search for polymorphs that target specific applications. Herein, we report a readily generalizable active-learning (AL) accelerated algorithm for identification of electrochemically stable iridium oxide polymorphs of IrO2 and IrO3. The search is coupled to a subsequent analysis of the electrochemical stability of the discovered structures for the acidic oxygen evolution reaction (OER). Structural candidates are generated by identifying all 956 structurally unique AB(2) and AB(3) prototypes in existing materials databases (more than 38000). Next, using an active learning approach, we find 196 IrO2 polymorphs within the thermodynamic amorphous synthesizability limit and reaffirm the global stability of the rutile structure. We find 75 synthesizable IrO3 polymorphs and report a previously unknown FeF3-type structure as the most stable, termed alpha-IrO3. To test the algorithms performance, we compare to a random search of the candidate space and report at least a 2-fold increase in the rate of discovery. Additionally, the AL approach can acquire the most stable polymorphs of IrO2 and IrO3 with fewer than 30 density functional theory optimizations. Analysis of the structural properties of the discovered polymorphs reveals that octahedral local coordination environments are preferred for nearly all low-energy structures. Subsequent Pourbaix Ir-H2O analysis shows that alpha-IrO3 is the globally stable solid phase under acidic OER conditions and supersedes the stability of rutile IrO2. Calculation of theoretical OER surface activities reveal ideal weaker
- Published
- 2020
42. Characterization of Fusarium oxysporum isolates from tomato plants in Algeria
- Author
-
Eduardo Gallego, Mebrouk Kihal, Abdesselem Si Mohammed, Jos e Sanchez, Nisserine Hamini Kadar, Jamal Eddine Henni, and Jose Antonio Garrido-Cardenas
- Subjects
0106 biological sciences ,0301 basic medicine ,Fusarium ,Fusarium redolens ,food and beverages ,Wilting ,Plant Science ,Fungus ,Biology ,biology.organism_classification ,01 natural sciences ,Microbiology ,Fusarium wilt ,03 medical and health sciences ,Horticulture ,030104 developmental biology ,Infectious Diseases ,Fusarium oxysporum ,Root rot ,Fusarium solani ,010606 plant biology & botany - Abstract
Fusarium oxysporum is an ubiquitous soil-borne fungus, having a high genetic and ecological diversity with the potential to cause diseases of many crop species of economic interest. Indeed, some strains of F. oxysporum known as pathogens generate common diseases such as wilting, root and crown rot on host plants. Two formae speciales are confined to the tomato: F. oxysporum f.sp. lycopersici (FOL) causing Fusarium wilt, while F. oxysporum f.sp. radicis-lycopersici (FORL) causes Fusarium crown and root rot. The study include 27 strains isolated from the stems, crown and roots of infected tomato plants; to confirm the identity of the fungus, the isolates were identified using analysis based on morphological criteria and sequencing of the translation elongation factor 1-alpha (TEF) gene using ef1 and ef2 primers. Twenty three strains belonged to F. oxysporum, three strains to Fusarium solani, and one strain to Fusarium redolens. Tomato seedlings were tested to confirm the pathogenicity of the isolates tested. Pathogenicity test confirmed that twenty two F. oxysporum isolates were pathogenic on tomato and produced crown and root rot typical of F. oxysporum f.sp. radicis-lycopersici forma specialis, while one strain initially identified as F. oxysporum did not induce disease symptoms and is considered as non-pathogenic. Additionally, no symptoms of Fusarium wilt were observed at all; therefore no strains can be affiliated to F. oxysporum f.sp. lycopersici forma specialis. Key words: Fusarium oxysporum, tomato, molecular identification, pathogenicity.
- Published
- 2016
- Full Text
- View/download PDF
43. Effect of solar photo-Fenton process in raceway pond reactors at neutral pH on antibiotic resistance determinants in secondary treated urban wastewater
- Author
-
José Antonio Sánchez Pérez, Jose Antonio Garrido-Cardenas, Antonino Fiorentino, Ana Agüera, Katarzyna Kowalska, Luigi Rizzo, and Belen Esteban
- Subjects
DNA, Bacterial ,Environmental Engineering ,Cefotaxime ,medicine.drug_class ,Health, Toxicology and Mutagenesis ,Iron ,Antibiotics ,0211 other engineering and technologies ,02 engineering and technology ,010501 environmental sciences ,Wastewater ,medicine.disease_cause ,Raceway pond reactor ,01 natural sciences ,Waste Disposal, Fluid ,Antibiotic resistance ,Antibiotic resistance genes ,medicine ,Solar Energy ,Environmental Chemistry ,Food science ,Waste Management and Disposal ,Escherichia coli ,0105 earth and related environmental sciences ,Raceway pond ,Detection limit ,021110 strategic, defence & security studies ,Chemistry ,Urban wastewater ,Drug Resistance, Microbial ,Hydrogen Peroxide ,Hydrogen-Ion Concentration ,Solar photo-Fenton ,Pollution ,Bacterial Load ,Antibiotic resistant bacteria ,Genes, Bacterial ,Sunlight ,Sewage treatment ,Water Microbiology ,medicine.drug - Abstract
Solar photo-Fenton process in raceway pond reactors was investigated at neutral pH as a sustainable tertiary treatment of real urban wastewater. In particular, the effect on antibiotic resistance determinants was evaluated. An effective inactivation of different wild bacterial populations was achieved considering total and cefotaxime resistant bacteria. The detection limit (1 CFU mL−1) was achieved in the range 80–100 min (5.4–6.7 kJ L−1 of cumulative solar energy required) for Total Coliforms (TC) (40–60 min for resistant TC, 4.3–5.2 kJ L−1), 60–80 min (4.5–5.4 kJ L−1) for Escherichia coli (E. coli) (40 min for resistant E. coli, 4.1–4.7 kJ L−1) and 40–60 min (3.9–4.5 kJ L−1) for Enterococcus sp. (Entero) (30–40 min for resistant Entero, 3.2–3.8 kJ L−1) with 20 mg L−1 Fe2+ and 50 mg L−1 H2O2. Under these mild oxidation conditions, 7 out of the 10 detected antibiotics were effectively removed (60–100%). As the removal of antibiotic resistance genes (ARGs) is of concern, no conclusive results were obtained, as sulfonamide resistance gene was reduced to some extent (relative abundance
- Published
- 2019
44. The Identification of Scientific Communities and Their Approach to Worldwide Malaria Research
- Author
-
Alfredo Alcayde-García, Jose Antonio Garrido-Cardenas, Nuria Novas, Francisco Gil-Montoya, Lilia González-Cerón, Concepción Mesa-Valle, and Francisco Manzano-Agugliaro
- Subjects
Knowledge management ,Biomedical Research ,Computer science ,Health, Toxicology and Mutagenesis ,International Cooperation ,030231 tropical medicine ,Control (management) ,Scopus ,malaria ,lcsh:Medicine ,Article ,03 medical and health sciences ,Antimalarials ,0302 clinical medicine ,medicine ,Humans ,030212 general & internal medicine ,Disease Eradication ,drug resistance ,business.industry ,lcsh:R ,Public Health, Environmental and Occupational Health ,medicine.disease ,scientific community ,Identification (information) ,Work (electrical) ,Publishing ,Communicable Disease Control ,Public Health ,business ,Working group ,vector ,Strengths and weaknesses ,Malaria - Abstract
It is essential to establish a pattern to detect the strengths and weaknesses of working groups publishing on malaria, to promote coordination to facilitate the eradication of the disease. Given the complexity of the scientific network of groups and institutions studying malaria, it is necessary to use a mathematical algorithm that allows us to know the real structure of research on the disease in the world. In this work, articles with the word &ldquo, malaria&rdquo, in the title or author keywords gathered from Elsevier Scopus database were analyzed. By means of specific software, graphs were created. The analysis of the data allowed established different scientific communities, among which two were very diverse: one formed by those groups concerned about the vector transmission and control, and another one focused on the drug resistance of the parasite. Basic, applied, and operational research to eradicate malaria is an ambitious goal of the international institutions and the scientific community. The combination of effort and the establishment of a worldwide-scientific network that allows an effective interconnection (exchange) of knowledge, infrastructure technology, collaborators, financial resources, and datasets will contribute more effectively to end the disease.
- Published
- 2018
45. SMARTPHONE AS AN INTERACTIVE LEARNING TOOL: ASSESSMENT OF THE USE IN UNIVERSITY TEACHING
- Author
-
Alfredo Alcayde García, M. Soler Ortiz, Nuria Novas Castellano, Francisco G. Montoya, Rosa María García Salvador, Manuel Fernández Ros, Juan Antonio Martínez Lao, Jose Antonio Garrido-Cardenas, J.A. Gázquez Parra, Antonio Jesús Zapata Sierra, Francisco Rogelio Manzano Agugliaro, and Esther Salmerón Manzano
- Subjects
Multimedia ,Computer science ,University teaching ,computer.software_genre ,computer ,Interactive Learning - Published
- 2018
- Full Text
- View/download PDF
46. MASTER'S DEGREE IN INDUSTRIAL ENGINEERING: GENERIC SKILLS ASSESSMENT AT CEIA3 UNIVERSITIES
- Author
-
J.A. Gázquez Parra, Rosa María García Salvador, Manuel Fernández Ros, Jose Antonio Garrido-Cardenas, M. Soler Ortiz, Nuria Novas Castellano, Alfredo Alcayde García, Francisco Rogelio Manzano Agugliaro, Esther Salmerón Manzano, and Antonio Jesús Zapata Sierra
- Subjects
Engineering ,Engineering management ,business.industry ,business ,Master s degree - Published
- 2018
- Full Text
- View/download PDF
47. GENERIC SKILLS ASSESSMENT IN THE INDUSTRIAL ELECTRONIC ENGINEERING DEGREE AT UNIVERSITY OF ALMERIA
- Author
-
M. Soler Ortiz, Alfredo Alcayde García, Jose Antonio Garrido-Cardenas, Nuria Novas Castellano, Esther Salmerón Manzano, Manuel Fernández Ros, J.A. Gázquez Parra, Antonio Jesús Zapata Sierra, Francisco Rogelio Manzano Agugliaro, and Rosa María García Salvador
- Subjects
Engineering ,biology ,business.industry ,business ,biology.organism_classification ,Almeria ,Manufacturing engineering ,Degree (temperature) - Published
- 2018
- Full Text
- View/download PDF
48. CREATION OF INTERACTIVE TEACHING MATERIALS FOR THE SUBJECTS OF INDUSTRIAL ENGINEERING
- Author
-
Nuria Novas Castellano, Manuel Fernández Ros, Esther Salmerón Manzano, Jose Antonio Garrido-Cardenas, J.A. Gázquez Parra, Rosa María García Salvador, M. Soler Ortiz, and Francisco Rogelio Manzano Agugliaro
- Subjects
Engineering ,business.industry ,business ,Manufacturing engineering - Published
- 2018
- Full Text
- View/download PDF
49. Trends in plant research using molecular markers
- Author
-
Jose Antonio Garrido-Cardenas, Francisco Manzano-Agugliaro, and Concepción Mesa-Valle
- Subjects
0106 biological sciences ,0301 basic medicine ,Genetic Markers ,Ecology (disciplines) ,Context (language use) ,Plant Science ,Biology ,Quantitative trait locus ,01 natural sciences ,DNA sequencing ,03 medical and health sciences ,Genetics ,Oligonucleotide Array Sequence Analysis ,Research ,Botany ,food and beverages ,High-Throughput Nucleotide Sequencing ,Plants ,RAPD ,030104 developmental biology ,Evolutionary biology ,Bibliometrics ,Microsatellite ,Amplified fragment length polymorphism ,Restriction fragment length polymorphism ,Biomarkers ,010606 plant biology & botany - Abstract
A deep bibliometric analysis has been carried out, obtaining valuable parameters that facilitate the understanding around the research in plant using molecular markers. The evolution of the improvement in the field of agronomy is fundamental for its adaptation to the new exigencies that the current world context raises. In addition, within these improvements, this article focuses on those related to the biotechnology sector. More specifically, the use of DNA markers that allow the researcher to know the set of genes associated with a particular quantitative trait or QTL. The use of molecular markers is widely extended, including: restriction fragment length polymorphism, random-amplified polymorphic DNA, amplified fragment length polymorphism, microsatellites, and single-nucleotide polymorphisms. In addition to classical methodology, new approaches based on the next generation sequencing are proving to be fundamental. In this article, a historical review of the molecular markers traditionally used in plants, since its birth and how the new molecular tools facilitate the work of plant breeders is carried out. The evolution of the most studied cultures from the point of view of molecular markers is also reviewed and other parameters whose prior knowledge can facilitate the approach of researchers to this field of research are analyzed. The bibliometric analysis of molecular markers in plants shows that top five countries in this research are: US, China, India, France, and Germany, and from 2013, this research is led by China. On the other hand, the basic research using Arabidopsis is deeper in France and Germany, while other countries focused its efforts in their main crops as the US for wheat or maize, while China and India for wheat and rice.
- Published
- 2017
50. GENERIC SKILLS ASSESSMENT IN THE LABOR RELATIONS AND HUMAN RESOURCES DEGREE AT UNIVERSITY OF ALMERIA
- Author
-
Esther Salmerón-Manzano, Francisco Manzano-Agugliaro, and Jose Antonio Garrido-Cardenas
- Subjects
Labor relations ,Labour economics ,biology ,business.industry ,Economics ,biology.organism_classification ,Human resources ,business ,Almeria ,Degree (temperature) - Published
- 2017
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.