184 results on '"Joseph West"'
Search Results
2. Classifying Reasonability in Retellings of Personal Events Shared on Social Media: A Preliminary Case Study with /r/AmITheAsshole.
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Ethan Haworth, Ted Grover, Justin Langston, Ankush Patel, Joseph West, and Alex C. Williams
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- 2021
3. A Futile Battle? Protein Quality Control and the Stress of Aging
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Higuchi-Sanabria, Ryo, Frankino, Phillip Andrew, Paul, Joseph West, Tronnes, Sarah Uhlein, and Dillin, Andrew
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Biochemistry and Cell Biology ,Biological Sciences ,Aging ,Generic health relevance ,Animals ,Autophagy ,Cytoplasm ,Endoplasmic Reticulum ,Endoplasmic Reticulum-Associated Degradation ,Homeostasis ,Mitochondria ,Stress ,Physiological ,Unfolded Protein Response ,ER UPR ,aging ,heat-shock response ,mitochondrial UPR ,stress response ,Medical and Health Sciences ,Developmental Biology ,Biochemistry and cell biology - Abstract
There exists a phenomenon in aging research whereby early life stress can have positive impacts on longevity. The mechanisms underlying these observations suggest a robust, long-lasting induction of cellular defense mechanisms. These include the various unfolded protein responses of the endoplasmic reticulum (ER), cytosol, and mitochondria. Indeed, ectopic induction of these pathways, in the absence of stress, is sufficient to increase lifespan in organisms as diverse as yeast, worms, and flies. Here, we provide an overview of the protein quality control mechanisms that operate in the cytosol, mitochondria, and ER and discuss how they affect cellular health and viability during stress and aging.
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- 2018
4. (Ph3P)3CuCF3: Preparation and Application of an Air-Stable Trifluoromethylating Agent
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Joseph West and Der Vang
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General Chemistry ,Education - Published
- 2022
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5. Spt4 selectively regulates the expression of C9orf72 sense and antisense mutant transcripts
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Kramer, Nicholas J., Carlomagno, Yari, Zhang, Yong-Jie, Almeida, Sandra, Cook, Casey N., Gendron, Tania F., Prudencio, Mercedes, Van Blitterswijk, Marka, Belzil, Veronique, Couthouis, Julien, Paul, Joseph West, Goodman, Lindsey D., Daughrity, Lillian, Chew, Jeannie, Garrett, Aliesha, Pregent, Luc, Jansen-West, Karen, Tabassian, Lilia J., Rademakers, Rosa, Boylan, Kevin, Graff-Radford, Neill R., Josephs, Keith A., Parisi, Joseph E., Knopman, David S., Petersen, Ronald C., Boeve, Bradley F., Deng, Ning, Feng, Yanan, Cheng, Tzu-Hao, Dickson, Dennis W., Cohen, Stanley N., Bonini, Nancy M., Link, Christopher D., Gao, Fen-Biao, Petrucelli, Leonard, and Gitler, Aaron D.
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- 2016
6. Improved Reinforcement Learning with Curriculum.
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Joseph West, Frédéric Maire, Cameron Browne, and Simon Denman
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- 2019
7. Machine learning seizure prediction: One problematic but accepted practice
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Joseph West, Zahra Dasht Bozorgi, Jeffrey Herron, Howard J Chizeck, Jordan D Chambers, and Lyra Li
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Cellular and Molecular Neuroscience ,Biomedical Engineering - Abstract
Objective. Epilepsy is one of the most common neurological disorders and can have a devastating effect on a person’s quality of life. As such, the search for markers which indicate an upcoming seizure is a critically important area of research which would allow either on-demand treatment or early warning for people suffering with these disorders. There is a growing body of work which uses machine learning methods to detect pre-seizure biomarkers from electroencephalography (EEG), however the high prediction rates published do not translate into the clinical setting. Our objective is to investigate a potential reason for this. Approach. We conduct an empirical study of a commonly used data labelling method for EEG seizure prediction which relies on labelling small windows of EEG data in temporal groups then selecting randomly from those windows to validate results. We investigate a confound for this approach for seizure prediction and demonstrate the ease at which it can be inadvertently learned by a machine learning system. Main results. We find that non-seizure signals can create decision surfaces for machine learning approaches which can result in false high prediction accuracy on validation datasets. We prove this by training an artificial neural network to learn fake seizures (fully decoupled from biology) in real EEG. Significance. The significance of our findings is that many existing works may be reporting results based on this confound and that future work should adhere to stricter requirements in mitigating this confound. The problematic, but commonly accepted approach in the literature for seizure prediction labelling is potentially preventing real advances in developing solutions for these sufferers. By adhering to the guidelines in this paper future work in machine learning seizure prediction is more likely to be clinically relevant.
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- 2022
8. Improved reinforcement learning with curriculum.
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Joseph West, Frédéric Maire, Cameron Browne, and Simon Denman
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- 2020
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9. Validation of S. Pombe Sequence Assembly by Microarray Hybridization.
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Joseph West, John Healy, Michael Wigler, William Casey, and Bud Mishra
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- 2006
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10. Preparation of titanocene dichloride and its application as an undergraduate inorganic laboratory experiment
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Joseph West, Taylor Bell, and Sara E Johnson
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- 2021
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11. 3. Why Congregations Mobilize for Progressive Causes
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A. Joseph West and Kraig Beyerlein
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- 2020
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12. Self-play deep learning for games: Maximising experiences
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Joseph West
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- 2020
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13. Evaluation of electrical properties of ex vivo human hepatic tissue with metastatic colorectal cancer
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Travis H. Jones, Shaurya Prakash, Mohamed H. Abdel-Rahman, Vish V. Subramaniam, Varun Lochab, Emily Alkandry, and Joseph West
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Pathology ,medicine.medical_specialty ,Physiology ,Colorectal cancer ,0206 medical engineering ,Biomedical Engineering ,Biophysics ,H&E stain ,Normal tissue ,02 engineering and technology ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Physiology (medical) ,medicine ,Electric Impedance ,Humans ,Chemistry ,Extramural ,Liver Neoplasms ,Hepatic tissue ,medicine.disease ,020601 biomedical engineering ,Tumor tissue ,Liver ,Dielectric Spectroscopy ,Colorectal Neoplasms ,030217 neurology & neurosurgery ,Ex vivo - Abstract
To probe the distribution of electrical properties in tumor-bearing human hepatic tissues with metastatic colorectal cancer.Electrochemical impedance spectroscopy (EIS) and a non-contact electromagnetic probe were used for distinguishing spatial heterogeneities in fresh, unfixed human hepatic tissues ex vivo from patients with metastatic colorectal cancer (CRC).Point-wise EIS measurements reported over a frequency range of 100 Hz-1 MHz showed that the interface tissue between visible tumor and normal tissue exhibits an electrically different domain (p0.05) from both normal tissue (over 100 Hz-100 kHz) and tumor tissue (over 100 Hz-1 MHz). Observations of the microstructure on tumor-bearing hepatic tissue from hematoxylin and eosin stained images and the equivalent circuit modelling were used to validate the impedance measurements and characterize previously unidentified interfacial domain between normal and tumor tissue. Lastly, in a proof of concept study, a new in-house designed non-contact electromagnetic probe, as opposed to the invasive EIS measurements, was demonstrated for distinguishing tumor tissue from the normal tissue in a hepatic tissue specimen from a patient with metastatic CRC.EIS measurements, correlated with histological observations, show potential for mapping electrical properties in tumor-bearing human hepatic tissue.
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- 2020
14. Printed electroceutical dressings for the inhibition of biofilms and treatment of chronic wounds
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Rachel Heald, Vish V. Subramaniam, Molly Marie Bennett, Sarah A. Salyer, Devendra H. Dusane, Shaurya Prakash, Varun Lochab, Prashanth Mohana Sundaram, Joseph West, and Paul Stoodley
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0301 basic medicine ,Polymicrobial infection ,integumentary system ,business.industry ,Mechanical Engineering ,030106 microbiology ,Biofilm ,Article ,Microbiology ,03 medical and health sciences ,030104 developmental biology ,In vivo ,Wound dressing ,Initial treatment ,Medicine ,Clinical case ,Electrical and Electronic Engineering ,Bacterial inhibition ,business ,Intervention treatment - Abstract
We report on an innovative, fabric-based conformable, and easily fabricated electroceutical wound dressing that inhibits bacterial biofilm infections and shows significant promise for healing chronic wounds. Cyclic voltammetry demonstrates the ability of the electroceutical to produce reactive oxygen species, primarily HOCl that is responsible for bacterial inhibition. In vitro investigation with the lawn biofilm grown on a soft tissue mimic assay shows the efficacy of the dressing against both Gram-positive and Gram-negative bacteria in the biofilm form. In vivo, the printed electroceutical dressing was utilized as an intervention treatment for a canine subject with a non-healing wound due to a year-long persistent polymicrobial infection. The clinical case study with the canine subject exhibited the applicability in a clinical setting with the results showing infection inhibition within 11 days of initial treatment. This printed electroceutical dressing was integrated with a Bluetooth® enabled circuit allowing remote monitoring of the current flow within the wound bed. The potential to monitor wounds remotely in real-time with a Bluetooth® enabled circuit proposes a new physical biomarker for management of infected, chronic wounds. [2020-0129]
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- 2020
15. Making up for Missing Pieces: SEM-EDS Gunshot Residue Analysis of Human Cranial Bone
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Natalie R. Langley, Stan C. Kunigelis, James Joseph West, and Cassie Boggs
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Elemental composition ,Chemistry ,Gunshot residue ,010401 analytical chemistry ,Sem analysis ,Forensic anthropology ,Anatomy ,01 natural sciences ,Experimental research ,0104 chemical sciences ,Head trauma ,Manner of death ,03 medical and health sciences ,0302 clinical medicine ,Cranial bone ,030216 legal & forensic medicine - Abstract
This report outlines a case in which cranial gunshot trauma was suspected, but a large portion of the cranium was not recovered from the scene, so the precise nature and etiology of the fractures could not be determined with certainty. Scanning electron microscopy (SEM) coupled with energy dispersive x-ray spectroscopy (SEM-EDS) is widely accepted as a reliable method for detecting gunshot residue (GSR) on the hands of shooters and on fleshed remains, and experimental research has shown that the technique is applicable to skeletal remains. Therefore, SEM-EDS was utilized to analyze several cranial fragments and a control fragment from a thoracic vertebra for gunshot residue. The technique enables the examination of particle morphology and elemental composition of the inorganic compound. Barium, antimony, and lead were detected on four of the five cranial fragments, confirming the presence of gunshot residue. The fifth fragment had barium and lead, but no antimony. No trace elements were detected on the control fragment from the thoracic vertebra. SEM analysis of the bone surface revealed the presence of characteristic GSR spherical deposits on three of the fragments. The combined presence of signature trace elements and spherical surface deposits on the cranial fragments are consistent with the presence of gunshot residue. The cause of death was certified as disruptive head trauma, and given the circumstances of the case the manner of death was certified as homicide. The SEM-EDS analysis confirmed and supported the pathologist’s and anthropologist’s assessment of the circumstances surrounding the death. KEYWORDS: forensic anthropology, forensic science, gunshot wounds, skeletal trauma, gunshot residue, scanning electron microscopy, energy-dispersive x-ray spectroscopy
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- 2018
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16. From Prophecy to Practice: Mutual Selection Cycles in the Routinization of Charismatic Authority
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Eric W. Schoon and A. Joseph West
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Charismatic authority ,050402 sociology ,0504 sociology ,0502 economics and business ,05 social sciences ,Religious studies ,Charisma ,Environmental ethics ,Sociology ,050203 business & management ,Selection (genetic algorithm) - Published
- 2017
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17. Improved Reinforcement Learning with Curriculum
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Simon Denman, Cameron Browne, Frederic Maire, Joseph West, Dept. of Advanced Computing Sciences, RS: FSE DACS, and RS: FSE DACS Mathematics Centre Maastricht
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FOS: Computer and information sciences ,Computer Science - Machine Learning ,0209 industrial biotechnology ,Computer science ,Monte Carlo tree search ,GAME ,Machine Learning (stat.ML) ,02 engineering and technology ,computer.software_genre ,General game playing ,Machine Learning (cs.LG) ,020901 industrial engineering & automation ,Resource (project management) ,Statistics - Machine Learning ,Artificial Intelligence ,Human–computer interaction ,Reinforcement learning ,0202 electrical engineering, electronic engineering, information engineering ,Curriculum learning ,Curriculum ,Artificial neural network ,General Engineering ,ComputingMilieux_PERSONALCOMPUTING ,Computer Science Applications ,Terminal (electronics) ,GO ,020201 artificial intelligence & image processing ,NEURAL-NETWORKS ,computer - Abstract
Humans tend to learn complex abstract concepts faster if examples are presented in a structured manner. For instance, when learning how to play a board game, usually one of the first concepts learned is how the game ends, i.e. the actions that lead to a terminal state (win, lose or draw). The advantage of learning end-games first is that once the actions which lead to a terminal state are understood, it becomes possible to incrementally learn the consequences of actions that are further away from a terminal state - we call this an end-game-first curriculum. Currently the state-of-the-art machine learning player for general board games, AlphaZero by Google DeepMind, does not employ a structured training curriculum; instead learning from the entire game at all times. By employing an end-game-first training curriculum to train an AlphaZero inspired player, we empirically show that the rate of learning of an artificial player can be improved during the early stages of training when compared to a player not using a training curriculum., Comment: Draft prior to submission to IEEE Trans on Games. Changed paper slightly
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- 2019
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18. Design and characterization of an electromagnetic probe for distinguishing morphological differences in soft tissues
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Vish V. Subramaniam, Travis H. Jones, Josh Javor, Emily K. Sequin, Shaurya Prakash, and Joseph West
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Capacitive coupling ,Materials science ,business.industry ,Capacitive sensing ,0206 medical engineering ,Detector ,Cytological Techniques ,02 engineering and technology ,Equipment Design ,020601 biomedical engineering ,Capacitance ,Inductive coupling ,030218 nuclear medicine & medical imaging ,Coupling (electronics) ,03 medical and health sciences ,0302 clinical medicine ,Electromagnetic Fields ,Electromagnetic coil ,Optoelectronics ,Animals ,Humans ,Cattle ,business ,Instrumentation ,Electrical conductor - Abstract
We present a method for designing and optimizing an in-house designed electromagnetic probe for distinguishing morphological differences in biological tissues. The probe comprises concentric multi-wound coils, the inner being the primary coil and the outer being the detector coil. A time-varying voltage is imposed on the primary coil, resulting in an induced current in the detector coil. For highly conductive samples, eddy currents are induced in the sample and inductively couple with the electromagnetic probe. However, in weakly conducting samples, the primary coupling mechanism is found to be capacitive though there can be a non-negligible inductive component. Both the mutual inductive coupling and the capacitive coupling between the sample and the probe are detected as a change in the induced voltage of the detector coil using lock-in detection. The induced voltage in the detector coil is influenced more by the morphological structure of the specimen rather than by changes in electrical conductivity within different regions of the sample. The instrument response of the lock-in amplifier is also examined with simulated input voltage signals to relate its output to specific changes in inductive and capacitive coupling, in order to relate sample characteristics to a single voltage output. A circuit element model is used to interpret the experimental measurements. It is found that the sensitivity of the measurement for a given set of probe characteristics (resistances, inductances, and capacitances) can be optimized by adding a small amount of capacitance in the external circuit in parallel with the detector coil. Illustrative measurements are presented on animal (porcine and bovine) tissue and on human liver tissue containing a metastatic tumor to demonstrate the capabilities of the probe and measurement method in distinguishing different tissue types despite having similar electrical conductivities. Since biological tissues are multi-scale, heterogeneous materials comprising regions of differing conductivity, permittivity, and morphological structure, the electromagnetic method presented here has the potential to examine structural variations in tissue undergoing physical changes due to healing or disease.
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- 2018
19. Abraham’s Faith: Both the Aesthetic and the Ethical in Fear and Trembling
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Joseph Westfall
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aesthetic ,ethical ,faith ,Hannay ,Alastair ,immediacy ,Logic ,BC1-199 ,Philosophy (General) ,B1-5802 - Abstract
In this paper, I examine Johannes de Silentio’s presentation of the faith of Abraham, deriving therefrom a new way of conceiving his notion of faith as a paradoxical co-inhabiting of both the aesthetic and the ethical stages, rather than as a rejection, synthesis, or overcoming of them. Relying largely upon Silentio’s account of Abraham’s faith as anxious but not doubting, I argue that the interpretations of Fear and Trembling by Alastair Hannay and Mark C. Taylor fail to account for some essential aspects of Silentio’s depiction. I conclude that faith, as it is described in Fear and Trembling, cannot be philosophically understood as it is not an object for thought but an existential perspective one lives.
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- 2024
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20. Ex vivoelectrical impedance measurements on excised hepatic tissue from human patients with metastatic colorectal cancer
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Carl Schmidt, Stephen Povoski, Charles L. Hitchcock, M P Karnes, Shaurya Prakash, Edward W. Martin, Emily K. Sequin, Vish V. Subramaniam, Sherif Abdel-Misih, Joseph West, Mark Bloomston, and S.D. Nichols
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Physiology ,Colorectal cancer ,Biomedical Engineering ,Biophysics ,Normal tissue ,In Vitro Techniques ,Physiology (medical) ,Liver tissue ,Electric Impedance ,Photography ,medicine ,Humans ,Electrical impedance spectroscopy ,Electrical impedance ,Aged ,Chemistry ,Reproducibility of Results ,Hepatic tissue ,Middle Aged ,medicine.disease ,Tumor tissue ,Liver ,Female ,Colorectal Neoplasms ,Ex vivo - Abstract
Point-wise ex vivo electrical impedance spectroscopy measurements were conducted on excised hepatic tissue from human patients with metastatic colorectal cancer using a linear four-electrode impedance probe. This study of 132 measurements from 10 colorectal cancer patients, the largest to date, reports that the equivalent electrical conductivity for tumor tissue is significantly higher than normal tissue (p < 0.01), ranging from 2–5 times greater over the measured frequency range of 100 Hz–1 MHz. Difference in tissue electrical permittivity is also found to be statistically significant across most frequencies. Furthermore, the complex impedance is also reported for both normal and tumor tissue. Consistent with trends for tissue electrical conductivity, normal tissue has a significantly higher impedance than tumor tissue (p
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- 2015
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21. Congregational Political Activity and Same-Sex Marriage: Social Movement Theory and Evidence for Contextual Influence
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Gary J. Adler, Catherine Hoegeman, and A. Joseph West
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Structure (mathematical logic) ,Resource mobilization ,050402 sociology ,Sociology and Political Science ,Presidential election ,05 social sciences ,Social movement theory ,0506 political science ,Politics ,0504 sociology ,050602 political science & public administration ,Religious organization ,Sociology ,Set (psychology) ,Social psychology ,Social movement - Abstract
We interpret three strands of social movement theory (social threat, opportunity structure, and resource mobilization) to understand religious congregations' political activity related to same-sex marriage. Using a unique, national data set from the 2008 presidential election, we show the importance of the anti-same-sex marriage discursive opportunity structure (DOS) for facilitating, and occasionally constraining, congregational political activity. Other theoretical factors influence congregations under limited, although important, conditions. Our research develops a nuanced understanding of congregations' roles in social movements that prioritize institutionalized political activity and expands DOS theory in relation to local religious organizations.
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- 2014
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22. An mTORC1‐Dependent Mouse Model for Cardiac Sarcoidosis
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Carlos Bueno‐Beti, Clarice X. Lim, Alexandros Protonotarios, Petra Lujza Szabo, Joseph Westaby, Mario Mazic, Mary N. Sheppard, Elijah Behr, Ouafa Hamza, Attila Kiss, Bruno K. Podesser, Markus Hengstschläger, Thomas Weichhart, and Angeliki Asimaki
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cardiac sarcoidosis ,fibrosis ,heart ,mouse model ,mTORC1 ,sarcoidosis ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Sarcoidosis is an inflammatory, granulomatous disease of unknown cause affecting multiple organs, including the heart. Untreated, unresolved granulomatous inflammation can lead to cardiac fibrosis, arrhythmias, and eventually heart failure. Here we characterize the cardiac phenotype of mice with chronic activation of mammalian target of rapamycin (mTOR) complex 1 signaling in myeloid cells known to cause spontaneous pulmonary sarcoid‐like granulomas. Methods and Results The cardiac phenotype of mice with conditional deletion of the tuberous sclerosis 2 (TSC2) gene in CD11c+ cells (TSC2fl/flCD11c‐Cre; termed TSC2KO) and controls (TSC2fl/fl) was determined by histological and immunological stains. Transthoracic echocardiography and invasive hemodynamic measurements were performed to assess myocardial function. TSC2KO animals were treated with either everolimus, an mTOR inhibitor, or Bay11‐7082, a nuclear factor‐kB inhibitor. Activation of mTOR signaling was evaluated on myocardial samples from sudden cardiac death victims with a postmortem diagnosis of cardiac sarcoidosis. Chronic activation of mTORC1 signaling in CD11c+ cells was sufficient to initiate progressive accumulation of granulomatous infiltrates in the heart, which was associated with increased fibrosis, impaired cardiac function, decreased plakoglobin expression, and abnormal connexin 43 distribution, a substrate for life‐threatening arrhythmias. Mice treated with the mTOR inhibitor everolimus resolved granulomatous infiltrates, prevented fibrosis, and improved cardiac dysfunction. In line, activation of mTOR signaling in CD68+ macrophages was detected in the hearts of sudden cardiac death victims who suffered from cardiac sarcoidosis. Conclusions To our best knowledge this is the first animal model of cardiac sarcoidosis that recapitulates major pathological hallmarks of human disease. mTOR inhibition may be a therapeutic option for patients with cardiac sarcoidosis.
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- 2023
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23. Non-contact method for directing electrotaxis
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Aniruddha M. Kaushik, Joshua Javor, Travis H. Jones, Timothy L. Henthorne, Mohd W. Nasser, Ramesh K. Ganju, Vish V. Subramaniam, Emily K. Sequin, Dinesh K. Ahirwar, and Joseph West
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Culture plates ,medicine.medical_treatment ,Motility ,Biology ,Article ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Electricity ,Cell Movement ,Electric field ,medicine ,Humans ,Contact method ,Mammary Glands, Human ,Electrodes ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Growth factor ,Cell Polarity ,Epithelial Cells ,Cell biology ,Cell Migration Assay ,Cell culture ,030220 oncology & carcinogenesis ,Intercellular Signaling Peptides and Proteins ,Female ,Breast cancer cells ,Chemokines - Abstract
We present a method to induce electric fields and drive electrotaxis (galvanotaxis) without the need for electrodes to be in contact with the media containing the cell cultures. We report experimental results using a modification of the transmembrane assay, demonstrating the hindrance of migration of breast cancer cells (SCP2) when an induced a.c. electric field is present in the appropriate direction (i.e. in the direction of migration). Of significance is that migration of these cells is hindered at electric field strengths many orders of magnitude (5 to 6) below those previously reported for d.c. electrotaxis and even in the presence of a chemokine (SDF-1α) or a growth factor (EGF). Induced a.c. electric fields applied in the direction of migration are also shown to hinder motility of non-transformed human mammary epithelial cells (MCF10A) in the presence of the growth factor EGF. In addition, we also show how our method can be applied to other cell migration assays (scratch assay) and by changing the coil design and holder, that it is also compatible with commercially available multi-well culture plates.
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- 2015
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24. Evidence of a Thick Heliopause Boundary Layer Resulting from Active Magnetic Reconnection with the Interstellar Medium
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Drew L. Turner, Adam Michael, Elena Provornikova, Marc Kornbleuth, Merav Opher, Stefan Eriksson, Benoit Lavraud, Parisa Mostafavi, Matthew E. Hill, Pontus Brandt, Ian J. Cohen, Joseph Westlake, John D. Richardson, Nathan A. Schwadron, and David J. McComas
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Heliopause ,Stellar-interstellar interactions ,Heliosheath ,Heliosphere ,Astrospheres ,Interstellar medium ,Astrophysics ,QB460-466 - Abstract
Voyager 1 and 2 data from the vicinity of the heliopause and very local interstellar medium are reexamined to better understand the confounding lack of rotation in the magnetic field ( B -field) across the heliopause observed by both Voyagers, despite their very large spatial separations (>100 au). Using three estimates for the orientation of the B -field in the pristine interstellar medium and four models of the heliosphere, we calculate draped interstellar B -field orientations along the model heliopauses and compare those estimates to the Voyager observations. At both Voyagers, expected draped B -fields are inconsistent with the observed B -field orientations after the boundary crossings. Furthermore, we show how the longer-term trends of the observed B -fields at both Voyagers after the crossings actually rotated away from both the expected draped B -field and the pristine interstellar B -field directions. We develop evidence, including an illustrative and analogous set of observations from Magnetospheric Multiscale spacecraft along Earth’s magnetopause, in support of a hypothesis that both Voyagers transited a thick boundary layer of reconnected magnetic flux along the heliopause surface. We estimate that Voyager 1 has not yet fully transited this boundary layer, the radial thickness of which at the Voyager 1 crossing location may be >18 au and likely much thicker. Meanwhile, at Voyager 2's crossing location, the boundary layer is likely much thinner, and for Voyager 2, we present evidence that Voyager 2 might already have transited the boundary layer and entered a region of fields and plasma that were never connected to the Sun—the very local interstellar medium.
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- 2024
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25. The Rockets for Extended-source X-ray Spectroscopy Instrument Design
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Drew M. Miles, Randall L. McEntaffer, James H. Tutt, Logan Baker, Ross McCurdy, Bailey Myers, Bridget O’Meara, and Joseph Weston
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Supernova remnants ,Diffuse x-ray background ,X-ray telescopes ,Spectrometers ,Rockets ,Spectroscopy ,Astrophysics ,QB460-466 - Abstract
The Rockets for Extended-source X-ray Spectroscopy (tREXS) are a series of suborbital rocket payloads designed to collect spectral emission from extended astronomical sources of soft X-rays. The tREXS spectrograph uses mechanical beam-shaping modules and reflection gratings to passively focus and then disperse incident X-rays to an array of Teledyne/e2v CIS 113 CMOS X-ray sensors. Designed to achieve a moderate spectral resolution, R ⪆ 50, from ≈15 to 40 Å over a large field of view (>10 deg ^2 ), the tREXS instrument is sensitive to line emission from key ion species over the soft-X-ray band. Here we present the complete end-to-end design of the tREXS spectrograph and discuss its significance and expected performance, using simulated observations of the Cygnus Loop supernova remnant and an enhanced region in the soft X-ray background.
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- 2024
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26. Representational Oligonucleotide Microarray Analysis: A High-Resolution Method to Detect Genome Copy Number Variation
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Michael Wigler, Ennapadam Venkatraman, Andrew Reiner, Jennifer Troge, Scott Powers, Kenneth Q. Ye, Diane Esposito, Larry Norton, John Healy, Robert Lucito, Amy Brady, Joseph West, Linda Rodgers, Seth Rostan, Ken C. Q. Nguyen, Jonathan Sebat, Adam B. Olshen, Joan Alexander, and Maoyen Chi
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Male ,Gene Dosage ,Representation oligonucleotide microarray analysis ,Breast Neoplasms ,Biology ,Gene dosage ,Genome ,Nucleic acid thermodynamics ,Cell Line, Tumor ,Genetics ,Humans ,Letters ,Copy-number variation ,Gene ,Genetics (clinical) ,Oligonucleotide Array Sequence Analysis ,Base Composition ,Models, Genetic ,Genome, Human ,Oligonucleotide ,Genetic Variation ,Nucleic Acid Hybridization ,Aneuploidy ,Diploidy ,Research Design ,Female ,Human genome ,Oligonucleotide Probes ,Genes, Neoplasm - Abstract
We have developed a methodology we call ROMA (representational oligonucleotide microarray analysis), for the detection of the genomic aberrations in cancer and normal humans. By arraying oligonucleotide probes designed from the human genome sequence, and hybridizing with “representations” from cancer and normal cells, we detect regions of the genome with altered “copy number.” We achieve an average resolution of 30 kb throughout the genome, and resolutions as high as a probe every 15 kb are practical. We illustrate the characteristics of probes on the array and accuracy of measurements obtained using ROMA. Using this methodology, we identify variation between cancer and normal genomes, as well as between normal human genomes. In cancer genomes, we readily detect amplifications and large and small homozygous and hemizygous deletions. Between normal human genomes, we frequently detect large (100 kb to 1 Mb) deletions or duplications. Many of these changes encompass known genes. ROMA will assist in the discovery of genes and markers important in cancer, and the discovery of loci that may be important in inherited predispositions to disease.
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- 2003
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27. Post Synthesis Treatment of Tunnel Manganese Oxide Nanowires for Improved Electrocatalytic Activity in Oxygen Evolution Reactions (OER)
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Patrick Joseph West, Bryan Byles, and Ekaterina Pomerantseva
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The oxygen evolution reaction (OER), the first step of the two-step electrolysis process used to split water into hydrogen and oxygen, is plagued by poor kinetics and requires catalysts to limit energy loss and improve efficiency. Precious metals and their alloys (Au, Pt, Ir) exhibit excellent catalytic behavior, but high material costs and concerns about the environmental impact caused by their production have led to intense investigation of period four transition metal oxides (manganese, iron, cobalt, and nickel oxides) as catalyst for OER.[1] In addition to their natural abundance and high electrochemical activity, manganese oxides represent a wide library of chemical compositions and morphologies that are stable in aqueous solutions allowing them to be utilized as OER catalysis. Tunnel manganese oxides are a family of manganese oxides composed of MnO6 octahedra that form tunnels around stabilizing ions and water molecules. α-MnO2 nanowires with square structural tunnels formed by two MnO6 octahedra on each side and potassium ions inside the tunnels were shown to have superior performance among various structurally diverse manganese oxide. [2]Additionally, high aspect ratio nanowire morphologies with diameters less than 100 nm and lengths on the order of microns, exhibiting high surface area, are attractive for catalytic applications. In this work, we investigated post synthesis treatment approaches for improving catalytic activity of α-MnO2 nanowires in OER. More specifically, acid leaching and cobalt doping were applied to modify α-MnO2 nanowires synthesized by hydrothermally treating a KMnO4 and NH3Cl solution at 150oC for 50 hours. During the acid leaching process, samples were dispersed in concentrated nitric acid for 72 hours under vigorous mixing. Such treatment is believed to produce vacancies in potassium, manganese, and oxygen crystallographic sites (Figure 1.a).[3,4] Cobalt ions were introduced into the crystal structure via hydrothermal treatment of 20 mg of α-MnO2 nanowires in 5 ml of Co(NO3)2 melt at elevated temperatures (T= 80-100oC, Figure 1.a). Electrochemical activity of Co-doped α-MnO2 nanowires (α-CoxMnO2 x=0.02;0.03;0.05), was evaluated in comparison with the electrochemical activity of pristine material (Figure 1.b). In addition, the effect of acid leaching and cobalt doping in conjunction was examined for α-MnO2 nanowires containing 0.02 mol % of cobalt (α-Co0.02MnO2, AL-α-Co0.02MnO2) and compared to that of α-MnO2 and AL-α-MnO2 nanowires (Figure 1.c). Synthesized materials were tested as OER catalysts using a Pine Research Instrumentation modulated speed rotator (MSP). Tests were performed at 1600 RPM in 0.1 M KOH electrolyte over a voltage window of 1 to 1.9 V vs RHE. Active electrodes were fabricated via ink casting of a 1:1 active material: carbon black ink prepared in ethanol with a Nafion® binding agent and mass loaded to have 0.05 mg of active material. Acid leaching for 72 hours resulted in the increase of electrocatalytic activity up to 26.6 mA/cm2 compared to that of pristine α-MnO2 nanowires (21.6 mA/cm2, Figure 1.c). For Co-doped samples, catalytic performance improved linearly with the increase of the cobalt content. The highest OER performance of 48.7 mA/cm2 was exhibited by α-Co0.05MnO2, which is a 125% increase as compared to the activity of pristine α-MnO2 (Figure 1.b). The defect rich sample (AL-α-Co0.02MnO2) that underwent both post synthesis treatments showed an increased activity when compared to materials individually modified by acid leaching or Co-doping (Figure 1.c). For example, cobalt doped 72-hour acid leached samples exhibited current densities of 35.0 mA/cm2, 20% higher than doped samples of the same chemical composition (29.4 mA/cm2). The increased catalytic activity of the acid-leached α-MnO2 was attributed to newly formed oxygen vacancies and a change in oxidation state of manganese. In manganese oxides, an average manganese oxidation state of +3.5 has been shown to result in the highest catalytic activity [5]. Acid leaching is believed to reduce the average oxidation state of manganese in α-MnO2. Co-doping potentially could further favorably affect the oxidation state of manganese while simultaneously creating additional active site for the oxygen evolution reaction leading to more efficient electrochemical water splitting. Acid leaching and cobalt doping both separately and in tandem were observed to have positive impacts on the OER catalytic activity of environmentally friendly and cost-efficient α-MnO2 catalysts while also suggesting that they could be applied to other catalytically active tunnel manganese oxides. Yi Cheng et al. Progress in Natural Science: Materials International. 25, 6. 2015 545-553. Frey, Carolin E et al. Chemistry – A European Journal21 (42) 2015 14958-68. Yuan, YF, et al. NATURE COMMUNICATIONS, vol. 7, 2016, 13374 Lee, Jin-Hyon, et al. Energy & Environmental Science, 5, 11, 2012, 9558-9565 S.Y. Lee MS thesis. University of Freiburg, 2015. Figure 1
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- 2017
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28. HEMODYNAMIC ASSESSMENT OF LOW FLOW, LOW GRADIENT SEVERE AORTIC STENOSIS WITH PRESERVED EF USING A PRESSURE WIRE
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Prasad Gunasekaran, Peter Tadros, Kamleish Persad, Arslan Shaukat, Buddhadeb Dawn, Mark Wiley, Joseph West, William Weintraub, Andrew J. Doorey, Jhapat Thapa, Zaher Fanari, and Sumaya Hammami
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medicine.medical_specialty ,Stenosis ,business.industry ,Internal medicine ,Cardiology ,Medicine ,Hemodynamics ,Low gradient ,Cardiology and Cardiovascular Medicine ,business ,medicine.disease ,Pressure wire - Published
- 2017
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29. THE IMPACT OF TRANSAORTIC GRADIENT AND TRANSAORTIC FLOW ON THE DISCREPANCY BETWEEN ECHOCARDIOGRAPHIC AND CARDIAC CATHETERIZATION EVALUATION OF SEVERE AORTIC STENOSIS WITH PRESERVED EJECTION FRACTION
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Jhapat Thapa, Sumaya Hammami, Buddhadeb Dawn, Andrew J. Doorey, William Weintraub, Joseph West, Prasad Gunasekaran, Arslan Shaukat, Zaher Fanari, Peter Tadros, Mark Wiley, and Kamleish Persad
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medicine.medical_specialty ,Stenosis ,Ejection fraction ,business.industry ,Internal medicine ,medicine.medical_treatment ,Echo (computing) ,medicine ,Cardiology ,Cardiology and Cardiovascular Medicine ,medicine.disease ,business ,Cardiac catheterization - Abstract
Background: Current guidelines discourage aortic stenosis (AS) evaluation by direct pressure measurement if echocardiography (echo) is adequate. However several studies show sizable discrepancies between echo and catheterization (cath) lab measurements. We wanted to investigate the impact of both
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- 2017
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30. Cell Biology. Clogging information flow in ALS
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Joseph West, Paul, Joseph Paul, West, and Aaron D, Gitler
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DNA Repeat Expansion ,Drosophila melanogaster ,C9orf72 Protein ,Astrocytes ,Frontotemporal Dementia ,Amyotrophic Lateral Sclerosis ,Heterogeneous-Nuclear Ribonucleoprotein Group A-B ,Animals ,Humans ,Proteins ,Dipeptides ,Cell Nucleolus ,Article - Abstract
An expanded GGGGCC repeat in C9orf72 is the most common genetic cause of frontotemporal dementia and amyotrophic lateral sclerosis. A fundamental question is whether toxicity is driven by the repeat RNA itself and/or by dipeptide repeat proteins generated by repeat-associated, non-ATG translation. To address this question we developed in vitro and in vivo models to dissect repeat RNA and dipeptide repeat protein toxicity. Expression of pure repeats in Drosophila caused adult-onset neurodegeneration attributable to poly-(glycine-arginine) proteins. Thus expanded repeats promoted neurodegeneration through neurotoxic proteins. Expression of individual dipeptide repeat proteins with a non-GGGGCC RNA sequence showed both poly-(glycine-arginine) and poly-(proline-arginine) proteins caused neurodegeneration. These findings are consistent with a dual toxicity mechanism, whereby both arginine-rich proteins and repeat RNA contribute to C9orf72-mediated neurodegeneration.
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- 2014
31. Genetic analysis using genomic representations
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Michael Wigler, Koei Chin, Mariko Nakimura, Ying Han, Joe W. Gray, Robert Lucito, Kendall Jensen, Joseph West, and Richard W. McCombie
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Placenta ,Restriction Mapping ,Biology ,Polymerase Chain Reaction ,Genome ,law.invention ,Loss of heterozygosity ,Restriction map ,Pregnancy ,law ,Neoplasms ,Humans ,Genes, Tumor Suppressor ,Copy-number variation ,Polymerase chain reaction ,Genetics ,Multidisciplinary ,Genome, Human ,Genetic Carrier Screening ,Chromosome Mapping ,DNA ,DNA, Neoplasm ,Biological Sciences ,Genes, erbB-2 ,Blotting, Southern ,Restriction enzyme ,Female ,Human genome ,Chromosome Deletion ,Comparative genomic hybridization - Abstract
Analysis of the genetic changes in human tumors is often problematical because of the presence of normal stroma and the limited availability of pure tumor DNA. However, large amounts of highly reproducible “representations” of tumor and normal genomes can be made by PCR from nanogram amounts of restriction endonuclease cleaved DNA that has been ligated to oligonucleotide adaptors. We show here that representations are useful for many types of genetic analyses, including measuring relative gene copy number, loss of heterozygosity, and comparative genomic hybridization. Representations may be prepared even from sorted nuclei from fixed and archived tumor biopsies.
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- 1998
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32. Measurement of Electrical Impedance and Eddy Currents in Tissue Phantoms
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Shaurya Prakash, Scott Koch, Karen Bellman, Joseph West, Vish V. Subramaniam, and Emily K. Sequin
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Surgical resection ,medicine.diagnostic_test ,business.industry ,Soft tissue ,Palpation ,law.invention ,Imaging modalities ,law ,Current practice ,Margin (machine learning) ,Eddy current ,Medicine ,business ,Electrical impedance ,Biomedical engineering - Abstract
Measurement of the electromagnetic (EM) properties of tissue such as electrical conductivity, permittivity, and eddy current characteristics can be used in clinical medicine for characterizing and distinguishing soft tissue morphology. Such measurements can yield complementary information to what can be obtained using analysis with an optical microscope. An example is the assessment of margins during the surgical resection of occult tumors. In current practice, the surgeon relies on pre-operative imaging modalities, sight and palpation to locate and attempt to fully resect the tumor(s). Frozen section pathological assessment offers the only other resource available to the surgeon for margin analysis, but it is incomplete because only a small fraction of the resected tissue is examined and it is often not feasible to wait for the results of the frozen section analysis before completing the surgery. This paper describes a characterization and imaging method based on variations in electromagnetic tissue properties to assess the surgical margins of resected tissues. This is noteworthy because accurate margin assessment has been shown to significantly improve long term patient outcomes[1].Copyright © 2013 by ASME
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- 2013
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33. POTENTIAL BENEFIT OF USING PRESSURE WIRE IN HEMODYNAMIC ASSESSMENT OF PARADOXICAL LOW FLOW, LOW GRADIENT SEVERE AORTIC STENOSIS WITH PRESERVED EJECTION FRACTION
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Joseph West, Michael Kostal, Erik Marshall, Andrew J. Doorey, Kamleish Persad, William Weintraub, Jhapat Thapa, Zaher Fanari, and Sumaya Hammami
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medicine.medical_specialty ,Ejection fraction ,business.industry ,Hemodynamics ,Stroke volume ,medicine.disease ,Pressure wire ,law.invention ,Stroke risk ,Stenosis ,Pressure measurement ,law ,Internal medicine ,Anesthesia ,Cardiology ,medicine ,Low gradient ,Cardiology and Cardiovascular Medicine ,business - Abstract
Current guidelines discourage aortic stenosis (AS) evaluation by direct pressure measurement if echocardiography is adequate due to potential stroke risk reported in old studies. Patients with both low gradient (Gradient < 40 mm HG) and/or flow (Stroke Volume Index SVI < 35) with normal ejection
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- 2016
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34. Eddy Current Measurement for Characterizing Soft Tissues
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Emily K. Sequin, Joseph West, and Vish V. Subramaniam
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Materials science ,Nuclear magnetic resonance ,law ,Electromagnetic coil ,Detector ,Phase (waves) ,Eddy current ,Current (fluid) ,Low frequency ,Signal ,law.invention ,Biomedical engineering ,Voltage - Abstract
Real-time and non-invasive imaging of tissues and detection of diseases on millimeter to centimeter scales can be useful in some clinical applications such as determination of margins during cancer surgery and image-guided pathology. In this paper, we describe an eddy current measurement method for characterizing soft tissues. The device consists of a pair of concentrically wound coils, a primary coil excited by a low frequency ( Experimental measurements on porcine muscle tissue examine the effects of varying tissue macrostructure and conductivity on the eddy current detector. Three sets of experiments are presented. First, muscle samples cut into different sized grids simulating the restriction of eddy current domains show that morphological structure has a strong influence on the detector signal. Second, eddy current measurements made on porcine muscle samples at varying degrees of dehydration show that as conductivity decreases, eddy current signals also decrease. Finally, measurements on porcine muscle samples soaked overnight in deionized water complement the dehydration experiments and confirm detector voltage and phase changes decrease with decreasing conductivity.
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- 2012
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35. Eddy Current Detection of Cancer in Surgically Excised Tissue
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Jennifer McFerran-Brock, Emily K. Sequin, Vish V. Subramaniam, and Joseph West
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Fluorodeoxyglucose ,medicine.medical_specialty ,Chemotherapy ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Cancer ,medicine.disease ,Radiation therapy ,Clinical Practice ,Positron emission tomography ,Biopsy ,medicine ,Radiology ,Tomography ,business ,medicine.drug - Abstract
In current clinical practice, a patient usually undergoes a diagnostic computer tomography (CT) scan for evaluation of specific presenting symptoms. The presence of cancer is then confirmed by a diagnostic biopsy or at surgical exploration by histopathologic analysis. Suspicious finding on the diagnostic CT scan may be followed by an 18F FDG (Fluorodeoxyglucose radiolabeled with 18F) positron emission tomography (PET) scan. In a majority of cases, these pre-operative CT and PET scans are used to identify the approximate location of the tumor(s) before surgical intervention. Surgery remains the most effective means of treating solid malignancies despite advances in chemotherapy and radiation therapy [1].Copyright © 2011 by ASME
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- 2011
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36. The Clarendon Edition of the Works of John Locke: The Correspondence of John Locke: In Eight Volumes, Vol. 1: Introduction; Letters Nos. 1–461
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Samuel Pepys, John Aubrey, John Locke, Sir Anthony Ashley Cooper, first ea Shaftesbury, Robert Boyle, Dr. Thomas Coxe, Denis Granville [Grenville], dean o Durham, Sir John Micklethwaite [Micklethwait], Sir Charles Scarburgh, Dr. Edmund Dickinson, Dr. Thomas Sydenham, Sir John Banks, baronet, William Courten [Charleton], Samuel Thomas, John Fell, bishop of Oxford, James Tyrrell, Sir Paul Neile, Sir Charles Berkeley, nd Earl of Berkeley, Dr. Edward Bernard, Elinor Parry [Hawkshaw], Ellice Price, Sir Philip Harcourt, Thomas Westrowe, Andrew Percivall, Anne Evelegh, Charles Perrott, Charles Powell, Abbé de Briolay de Beaupreau, Dr Ayliffe Ivye, Dr Claude Brouchier, Dr. David Thomas, Dr Edmund O'Meara [Meara], Dr. Henry Woodward, Dr. John Dolben, Dr. John Mapletoft, E. Bedel [Bedles], Frances Manners, countess of Rutland, Francis Atkins, Franciscus Raulin, S. J., Gabriel Towerson, George Berkeley, ninth Baron Berkel Berkeley, George Percivall, George Walls, George Williamson, Henry Barnard, Henry Flower, Henry Townshend, Isaac Rush, Isaiah [Esay] Ward, Dr. J. Schard [Scardius, Scardysse], Jacques Hochreutiner [Horutener], Jacques Schlappritzi [Selapris], James Allestry, Col. James Heane, Johannes Gerrart [Gerart, Gerrard], John Cockshutt, John Cooke, John Dod, John Hoskins, John Maggs, John Parry, John Richards, John Strachey, Joseph West, Lady Anne Alford, Lady Ann Howe [Manners], Lady Dorothy Ashley Cooper, countes Shaftesbury, Margaret Beavis [Bevis, Blomer], M.-L. Brunyer, Mrs. A. Beavis, Anna [Anne] Grigg, Elizabeth Jepp [Buckland], Nicolas Thoynard [Toinard], Peter Locke, Richard Lilburne, Richard Williamson, Robert Crosse, Robert Hammond, Robert Huntington, Robert Mandey, Robert Pickering, Sir Samuel Eyre, Samuel Tilly, Sir Peter Colleton, second baronet, Thomas Blomer, Thomas Grenfeild, Thomas Harborne, Thomas Herbert, eighth earl of Pemb Montgomery, Sir Thomas Stringer, Thomas Symes, Thomas Tufton, sixth earl of Thanet, William Carr, William Fanshawe, Sir William Godolphin, William Allestree, William Coker, William Glanville, William Owen, William Uvedale, Lady Margaret Ashley Cooper [Spence Shaftesbury, Nathaniel Hodges, and John Locke, Sr.
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Philosophy ,Classics ,Law and economics - Published
- 2010
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37. 318 JOSEPH WEST to LOCKE, 4 September 1676 (272)
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Joseph West and E. S. de Beer
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History ,Political economy ,Economic history - Published
- 2010
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38. 272 JOSEPH WEST to LOCKE, 28 June 1673 (318)
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E. S. de Beer and Joseph West
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Geography ,Anthropology ,Cartography - Published
- 2010
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39. Once-weekly oral alendronate 70 mg in patients with glucocorticoid-induced bone loss: a 12-month randomized, placebo-controlled clinical trial
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Stanley Cohen, Thomas J. Schnitzer, Kenneth G. Saag, Anthony Sebba, Joseph West, Maria Greenwald, N. Verbruggen, Hilde Giezek, and S. Aubrey Stoch
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Adult ,Male ,medicine.medical_specialty ,Bone density ,Immunology ,Osteoporosis ,Urology ,Administration, Oral ,Lumbar vertebrae ,Placebo ,law.invention ,Placebos ,Rheumatology ,Randomized controlled trial ,law ,Bone Density ,Rheumatic Diseases ,medicine ,Immunology and Allergy ,Humans ,Vitamin D ,Glucocorticoids ,Aged ,Lumbar Vertebrae ,Trochanter ,Alendronate ,Bone Density Conservation Agents ,business.industry ,Alendronic acid ,Middle Aged ,medicine.disease ,Surgery ,Osteopenia ,medicine.anatomical_structure ,Calcium ,Drug Therapy, Combination ,Female ,Hip Joint ,business ,Biomarkers ,medicine.drug - Abstract
Objective.Glucocorticoid-induced osteoporosis is the most common iatrogenic form of osteoporosis. We evaluated the efficacy and safety of once-weekly bisphosphonate therapy for prevention and treatment of bone loss in patients on glucocorticoid therapy.Methods.We conducted a 12-month, multicenter, randomized, double-blind, placebo-controlled trial with 114 and 59 patients in the treatment and placebo arms, respectively. Participants were stratified according to the duration of prior oral glucocorticoid therapy at randomization. Participants received alendronate 70 mg once weekly (ALN OW) or placebo; all received supplemental daily calcium (1000 mg) and 400 IU vitamin D. Clinical evaluations were performed at baseline, 3, 6, 9, and 12 months.Results.At 12 months, there was a significant mean percentage increase from baseline in the ALN OW group for lumbar spine (2.45%), trochanter (1.27%), total hip (0.75%), and total body (1.70%) bone mineral density (BMD). Comparing ALN OW versus placebo at 12 months, a significant treatment difference for the mean percentage change from baseline was observed for lumbar spine (treatment difference of 2.92%; p ≤ 0.001), trochanter (treatment difference 1.66%; p = 0.007), and total hip (treatment difference 1.19; p = 0.008) BMD. Biochemical markers of bone remodeling also showed significant mean percentage decreases from baseline.Conclusion.Over 12 months ALN OW significantly increased lumbar spine, trochanter, total hip, and total body BMD compared with baseline among patients taking glucocorticoid therapy. A significant treatment difference versus placebo was observed at 12 months for the mean percentage change from baseline for lumbar spine, trochanter, and total hip.
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- 2009
40. Safety and tolerability of ertapenem versus ceftriaxone in a double-blind study performed in children with complicated urinary tract infection, community-acquired pneumonia or skin and soft-tissue infection
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Adriano, Arguedas, Jaime, Cespedes, Francesc Aseni, Botet, Jeffrey, Blumer, Ram, Yogev, Richard, Gesser, Jean, Wang, Joseph, West, Theresa, Snyder, Wendy, Wimmer, and Stefan, Zielen
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Microbiology (medical) ,Ertapenem ,Male ,medicine.medical_specialty ,Carbapenem ,Adolescent ,Molecular Sequence Data ,beta-Lactams ,chemistry.chemical_compound ,Pharmacotherapy ,Community-acquired pneumonia ,Double-Blind Method ,Internal medicine ,polycyclic compounds ,medicine ,Pneumonia, Bacterial ,Humans ,Pharmacology (medical) ,Adverse effect ,Child ,business.industry ,Soft Tissue Infections ,Ceftriaxone ,Infant ,General Medicine ,Skin Diseases, Bacterial ,medicine.disease ,Surgery ,Anti-Bacterial Agents ,body regions ,Community-Acquired Infections ,Pneumonia ,Infectious Diseases ,Tolerability ,chemistry ,Child, Preschool ,Urinary Tract Infections ,Female ,business ,medicine.drug - Abstract
The carbapenem antibiotic ertapenem has been shown to be safe, well tolerated and effective in treating adults with complicated urinary tract infection, skin and soft-tissue infection and community-acquired pneumonia. In this study, we evaluated ertapenem for treating these infections in children in a randomised, double-blind, active-controlled clinical trial. The primary outcome was the incidence of clinical and laboratory drug-related serious adverse events (AEs). Children were randomised in a 3:1 ratio (ertapenem:ceftriaxone) stratified by index infection and age to receive ertapenem or ceftriaxone; 303 children received ertapenem and 100 children received ceftriaxone. The median duration of parenteral therapy was 4 days for both treatments. The most commonly reported drug-related clinical AEs during parenteral therapy were diarrhoea (5.9% ertapenem, 10% ceftriaxone), infusion site erythema (3% ertapenem, 2% ceftriaxone) and infusion site pain (5% ertapenem, 1% ceftriaxone). One child in each group reported a serious drug-related clinical AE. No serious drug-related laboratory AEs were reported. In children aged 3 months to 17 years, ertapenem was well tolerated and had a comparable safety profile to that of ceftriaxone.
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- 2008
41. Alendronate/vitamin D3 70 mg/2800 IU with and without additional 2800 IU vitamin D3 for osteoporosis: results from the 24-week extension of a 15-week randomized, controlled trial
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Amy Lamotta, Helmut W. Minne, John I. Reed, Neil Binkley, Östen Ljunggren, Michael F. Holick, Johann D. Ringe, Joseph West, Arthur C. Santora, and Minzhi Liu
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Vitamin ,Male ,medicine.medical_specialty ,Histology ,Randomization ,Bone density ,Physiology ,Endocrinology, Diabetes and Metabolism ,Osteoporosis ,Hypercalciuria ,Gastroenterology ,chemistry.chemical_compound ,Double-Blind Method ,Bone Density ,Internal medicine ,medicine ,Vitamin D and neurology ,Humans ,Aged ,Cholecalciferol ,Alendronate ,Bone Density Conservation Agents ,business.industry ,Alendronic acid ,medicine.disease ,Postmenopause ,Endocrinology ,chemistry ,Tolerability ,Drug Therapy, Combination ,Female ,business ,medicine.drug - Abstract
Although vitamin D supplementation is a fundamental part of osteoporosis treatment, many patients do not regularly take adequate amounts. A once-weekly (OW) alendronate (ALN) preparation that includes 2800 IU of vitamin D3 in a single combination tablet (ALN+D2800) is available for treating patients and ensuring intake of vitamin D that is consistent with existing guidelines. This randomized, double-blind study extension was conducted to evaluate the safety and tolerability of ALN+D2800 and ALN+D2800 plus an additional 2800 IU vitamin D3 single tablet supplement (ALN+D5600) administered for 24 weeks in men and postmenopausal women with osteoporosis previously treated OW for 15 weeks with either ALN or ALN+D2800. The primary endpoint was the proportion of participants who developed hypercalciuria (defined as a 24-hour urine calcium >300 mg in women or >350 mg in men and an increase of >25% versus randomization baseline) at week 39. The key secondary endpoint was the proportion of participants with vitamin D insufficiency (serum 25(OH)D
- Published
- 2007
42. Validation of S. pombe sequence assembly by microarray hybridization
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Michael Wigler, William Casey, Bud Mishra, John Healy, and Joseph West
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Chromosomes, Artificial, Bacterial ,Population ,Sequence assembly ,Computational biology ,Biology ,Physical Maps ,Genome ,Sequence annotation ,Schizosaccharomyces ,Genetics ,education ,Molecular Biology ,Oligonucleotide Array Sequence Analysis ,education.field_of_study ,Comparative Genomic Hybridization ,Models, Genetic ,Genome sequence assembly ,Small number ,Sequence Analysis, DNA ,Physical Chromosome Mapping ,Computational Mathematics ,Computational Theory and Mathematics ,Modeling and Simulation ,Microarray hybridization ,Algorithms - Abstract
We describe a method to make physical maps of genomes using correlative hybridization patterns of probes to random pools of BACs. We derive thereby an estimated distance between probes, and then use this estimated distance to order probes. To test the method, we used BAC libraries from Schizzosaccharomyces pombe. We compared our data to the known sequence assembly, in order to assess accuracy. We demonstrate a small number of significant discrepancies between our method and the map derived by sequence assembly. Some of these discrepancies may arise because genome order within a population is not stable; imposing a linear order on a population may not be biologically meaningful.
- Published
- 2006
43. Clogging information flow in ALS
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Paul, Joseph West, primary and Gitler, Aaron D., additional
- Published
- 2014
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44. Detecting Gene Copy Number Fluctuations in Tumor Cells by Microarray Analysis of Genomic Representations
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Bhubaneswar Mishra, Andrew Reiner, Larry Norton, Michael Wigler, Scott Powers, Joseph West, Robert Lucito, Diane Esposito, and Joan Alexander
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Genetics ,Letter ,Polymorphism, Genetic ,Models, Genetic ,Microarray analysis techniques ,Gene Expression Profiling ,Copy number analysis ,Gene Dosage ,Nucleic Acid Hybridization ,Reproducibility of Results ,Breast Neoplasms ,Biology ,Gene dosage ,Gene expression profiling ,Nucleic acid thermodynamics ,genomic DNA ,ComputingMethodologies_PATTERNRECOGNITION ,Tumor Cells, Cultured ,Humans ,Copy-number variation ,DNA microarray ,DNA Probes ,Genetics (clinical) ,Oligonucleotide Array Sequence Analysis - Abstract
In this work, we explore the use of representations in conjunction with DNA microarray technology to measure gene copy number changes in cancer. We demonstrate that arrays of DNA probes derived from low-complexity representations can be used to detect amplifications, deletions, and polymorphic differences when hybridized to representations of genomic DNA. The method is both reproducible and verifiable, and is applicable even to microscopic amounts of primary tumors. We also present a mathematical model for array performance that is useful for designing and understanding DNA microarray hybridization protocols. The future applications and challenges of this approach are discussed.
- Published
- 2000
45. Behavioural plasticity and the transition to order in jackdaw flocks
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Hangjian Ling, Guillam E. Mclvor, Joseph Westley, Kasper van der Vaart, Richard T. Vaughan, Alex Thornton, and Nicholas T. Ouellette
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Science - Abstract
Modelling collective behaviour in different circumstances remains a challenge because of uncertainty related to interaction rule changes. Here, the authors report plasticity in local interaction rules in flocks of wild jackdaws with implications for both natural and artificial collective systems.
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- 2019
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46. Electrophoretic drawing of continuous fibers of single-walled carbon nanotubes
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Anthony F. Luscher, Joseph West, Vish V. Subramaniam, and R. Annamalai
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Materials science ,Sonication ,General Physics and Astronomy ,chemistry.chemical_element ,Nanotechnology ,Carbon nanotube ,Tungsten ,law.invention ,Electrophoresis ,chemistry ,law ,Electrode ,Fiber ,Current (fluid) ,Composite material ,DC bias - Abstract
Control over the current during electrophoretic drawing of continuous fibers of single-walled carbon nanotubes (SWCNTs) is shown to be critical in producing long fibers with specific diameters. In the process, as-produced SWCNTs are first dispersed in N,N-dimethylformamide (DMF) by sonication. A tungsten probe tip is then immersed in the SWCNT∕DMF solution, and a dc bias is applied between the tip and another electrode at the bottom of the beaker containing the solution. After a dark cloud several millimeters in diameter develops around the tip, the electrode is withdrawn to form continuous macroscopic fibers of SWCNTs. The resulting fiber length and diameter are found to be principally determined by the magnitude of the current. Under constant voltage conditions where the current is allowed to vary, the fibers are short (several millimeters long) and their diameters vary drastically along their lengths. Of significance is the fact that when the current is maintained at constant values, fibers several cen...
- Published
- 2005
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47. Detection of gene copy number fluctuations with microarrays using genomic representations
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Seth Rostan, Joan Alexander, Joseph West, Robert Lucito, and Michael Wigler
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Genetics ,Copy number analysis ,Copy-number variation ,DNA microarray ,Biology - Published
- 2001
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48. Tkwant: a software package for time-dependent quantum transport
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Thomas Kloss, Joseph Weston, Benoit Gaury, Benoit Rossignol, Christoph Groth, and Xavier Waintal
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quantum nanoelectronics ,non-equilibrium ,real-time dynamics ,tight binding ,numerical simulation ,Science ,Physics ,QC1-999 - Abstract
T kwant is a Python package for the simulation of quantum nanoelectronics devices to which external time-dependent perturbations are applied. T kwant is an extension of the kwant package ( https://kwant-project.org/ ) and can handle the same types of systems: discrete tight-binding-like models that consist of an arbitrary central region connected to semi-infinite electrodes. The problem is genuinely many-body even in the absence of interactions and is treated within the non-equilibrium Keldysh formalism. Examples of Tkwant applications include the propagation of plasmons generated by voltage pulses, propagation of excitations in the quantum Hall regime, spectroscopy of Majorana fermions in semiconducting nanowires, current-induced skyrmion motion in spintronic devices, multiple Andreev reflection, Floquet topological insulators, thermoelectric effects, and more. The code has been designed to be easy to use and modular. T kwant is free software distributed under a BSD license and can be found at https://tkwant.kwant-project.org/ .
- Published
- 2021
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49. High-performance liquid chromatographic separation of hepatitis B immunoglobulin and aggregates
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Patricia Holt Sackett and Joseph West
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Polymers ,Immunoglobulins ,medicine.disease_cause ,Immunoglobulin E ,Biochemistry ,High-performance liquid chromatography ,Virus ,Analytical Chemistry ,medicine ,Humans ,Hepatitis B Antibodies ,Chromatography, High Pressure Liquid ,Hepatitis B virus ,Chromatography ,biology ,Chemistry ,Organic Chemistry ,Infant, Newborn ,General Medicine ,Hepatitis B immunoglobulin ,biology.organism_classification ,Chromatographic separation ,Hepadnaviridae ,biology.protein ,Antibody ,Ultracentrifugation - Published
- 1986
50. Mandibular fractures from civilian gunshot wounds: a study of 20 cases
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Phadung Chadaratana, Mark May, Joseph West, and Amnuay Cutchavaree
- Subjects
Adult ,Male ,medicine.medical_specialty ,Adolescent ,medicine.medical_treatment ,Poison control ,Penicillins ,Tracheotomy ,Tongue ,Mandibular Fractures ,Injury prevention ,medicine ,Tetanus Toxoid ,Humans ,Reduction (orthopedic surgery) ,Aged ,business.industry ,Osteomyelitis ,Mandible ,Airway obstruction ,Middle Aged ,medicine.disease ,Surgery ,Erythromycin ,Radiography ,medicine.anatomical_structure ,Otorhinolaryngology ,Female ,Wounds, Gunshot ,business - Abstract
Management of penetrating wounds of the mandible caused by civilian firearms differs from military injuries primarily because of the difference in missile velocity. Most reports are based upon war-time experience. Since civilian gunshot wounds of the mandible have been recorded in isolated case reports, a review of our experience managing 20 patients is reported. All fractures were initially managed by closed reduction reserving open reduction for those cases that failed to respond to closed reduction. Eighteen had displaced fractures and two were undisplaced. Only two patients required open reduction, both had the displaced type. Airway obstruction occurred in six out of 20 and were associated with injuries to the floor of the mouth or tongue. Five of these patients received tracheotomy while one, in whom a tracheostomy was not performed, died. Only one patient developed infection. Osteomyelitis in this case responded to antibiotics.
- Published
- 1973
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