176 results on '"Juan Pablo Pardo"'
Search Results
2. Nitrogen limitation-induced adaptive response and lipogenesis in the Antarctic yeast Rhodotorula mucilaginosa M94C9
- Author
-
Miguel Rosas-Paz, Alberto Zamora-Bello, Nayeli Torres-Ramírez, Diana Villarreal-Huerta, Lucero Romero-Aguilar, Juan Pablo Pardo, Mohammed El Hafidi, Georgina Sandoval, Claudia Segal-Kischinevzky, and James González
- Subjects
Rhodotorula mucilaginosa ,lipogenesis ,nitrogen starvation ,oleaginous yeast ,neutral lipid production ,adaptive stress response ,Microbiology ,QR1-502 - Abstract
The extremotolerant red yeast Rhodotorula mucilaginosa displays resilience to diverse environmental stressors, including cold, osmolarity, salinity, and oligotrophic conditions. Particularly, this yeast exhibits a remarkable ability to accumulate lipids and carotenoids in response to stress conditions. However, research into lipid biosynthesis has been hampered by limited genetic tools and a scarcity of studies on adaptive responses to nutrient stressors stimulating lipogenesis. This study investigated the impact of nitrogen stress on the adaptive response in Antarctic yeast R. mucilaginosa M94C9. Varied nitrogen availability reveals a nitrogen-dependent modulation of biomass and lipid droplet production, accompanied by significant ultrastructural changes to withstand nitrogen starvation. In silico analysis identifies open reading frames of genes encoding key lipogenesis enzymes, including acetyl-CoA carboxylase (Acc1), fatty acid synthases 1 and 2 (Fas1/Fas2), and acyl-CoA diacylglycerol O-acyltransferase 1 (Dga1). Further investigation into the expression profiles of RmACC1, RmFAS1, RmFAS2, and RmDGA1 genes under nitrogen stress revealed that the prolonged up-regulation of the RmDGA1 gene is a molecular indicator of lipogenesis. Subsequent fatty acid profiling unveiled an accumulation of oleic and palmitic acids under nitrogen limitation during the stationary phase. This investigation enhances our understanding of nitrogen stress adaptation and lipid biosynthesis, offering valuable insights into R. mucilaginosa M94C9 for potential industrial applications in the future.
- Published
- 2024
- Full Text
- View/download PDF
3. A Response to Critics
- Author
-
Juan Pablo Pardo-Guerra
- Subjects
knowledge ,neoliberalism ,universities ,research evaluations ,organizations ,Social Sciences ,Sociology (General) ,HM401-1281 - Abstract
In this short response to the comments by Étienne Ollion and Andrea Saltelli on The Quantified Scholar (CUP, 2022), the author Juan Pablo Pardo-Guerra explores some of the methodological and ethical dimensions of the valuation of research in the present.
- Published
- 2024
- Full Text
- View/download PDF
4. Analysis of the Respiratory Activity in the Antarctic Yeast Rhodotorula mucilaginosa M94C9 Reveals the Presence of Respiratory Supercomplexes and Alternative Elements
- Author
-
Daniel Reyes-Rosario, Juan Pablo Pardo, Guadalupe Guerra-Sánchez, Héctor Vázquez-Meza, Georgina López-Hernández, Genaro Matus-Ortega, James González, Marcelo Baeza, and Lucero Romero-Aguilar
- Subjects
extremotolerant ,NADPH dehydrogenase ,OxPhos ,mitochondrial respiratory chain ,Biology (General) ,QH301-705.5 - Abstract
The respiratory activities of mitochondrial complexes I, II, and IV were analyzed in permeabilized Rhodotorula mucilaginosa cells and isolated mitochondria, and the kinetic parameters K0.5 and Vmax were obtained. No difference in substrate affinities were found between mitochondria and permeabilized cells. The activities of the components of the mitochondrial respiratory chain of the Antarctic yeast R. mucilaginosa M94C9 were identified by in-gel activity and SDS-PAGE. The mitochondria exhibited activity for the classical components of the electron transport chain (Complexes I, II, III, and IV), and supercomplexes were formed by a combination of the respiratory complexes I, III, and IV. Unfortunately, the activities of the monomeric and dimeric forms of the F1F0-ATP synthase were not revealed by the in-gel assay, but the two forms of the ATP synthase were visualized in the SDS-PAGE. Furthermore, two alternative pathways for the oxidation of cytosolic NADH were identified: the alternative NADH dehydrogenase and the glycerol-3-phosphate dehydrogenase. In addition, an NADPH dehydrogenase and a lactate cytochrome b2 dehydrogenase were found. The residual respiratory activity following cyanide addition suggests the presence of an alternative oxidase in cells.
- Published
- 2024
- Full Text
- View/download PDF
5. Ustilago maydis Yeast Mutant Produces Cytosolic Melanin by Tyrosine-Tyrosinase Activity with Stain Biosorption Capability
- Author
-
Cinthya Martínez-López, Melissa Vázquez-Carrada, Oscar Flores-Herrera, Juan Pablo Pardo, Dario Rafael Olicón-Hernández, and Guadalupe Guerra-Sánchez
- Subjects
melanin ,Ustilago maydis ,melanin accumulation ,tyrosinase ,L-DOPA pathway ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Ustilago maydis is a biotrophic basidiomycete fungus that infects corn plants and works as an excellent phytopathogen model, facilitating numerous genetic transformations for studying the mechanisms of plant infection. A random mutation event in the mutant strains designed to investigate the physiological significance of two plasma membrane proton-ATPases in this model resulted in a pigmented phenotype strain. For this study, the FB2 strain and the ΔPMA1 mutant were chosen to assess the pigment, which was confirmed as melanin through thin-layer chromatography, UV, and IR spectrophotometry. The melanin was observed to accumulate in the cytosol, as evident from scanning and transmission electron microscopy, and did not interfere with normal cell growth in yeast extract peptone dextrose media or minimal media. Notably, the mutant exhibited a 25% higher melanin yield compared to wild-type cells. To analyze the melanin synthesis, the tyrosinase activity was measured in a phosphate buffer at pH 6.5. The enzyme demonstrated greater activity with tyrosine as a substrate than with L-3,4 dihydroxyphenylalanine, maintaining the same trend in ion preference. Both FB2 and ΔPMA1 mutant cells were subjected to biosorption experiments, revealing that the mutants with an excess of cytosolic melanin were capable of removing at least 50 ppm of methylene blue. In conclusion, U. maydis can accumulate melanin in the cytosol without adverse physiological effects and this presents biotechnological potential for dye removal.
- Published
- 2023
- Full Text
- View/download PDF
6. Metabolic Changes and Antioxidant Response in Ustilago maydis Grown in Acetate
- Author
-
Lucero Romero-Aguilar, Katia Daniela Hernández-Morfín, Guadalupe Guerra-Sánchez, and Juan Pablo Pardo
- Subjects
acetate ,oxidative stress ,gluconeogenesis ,glycolysis ,lipid droplets ,Ustilago maydis ,Biology (General) ,QH301-705.5 - Abstract
Ustilago maydis is an important model to study intermediary and mitochondrial metabolism, among other processes. U. maydis can grow, at very different rates, on glucose, lactate, glycerol, and ethanol as carbon sources. Under nitrogen starvation and glucose as the only carbon source, this fungus synthesizes and accumulates neutral lipids in the form of lipid droplets (LD). In this work, we studied the accumulation of triacylglycerols in cells cultured in a medium containing acetate, a direct precursor of the acetyl-CoA required for the synthesis of fatty acids. The metabolic adaptation of cells to acetate was studied by measuring the activities of key enzymes involved in glycolysis, gluconeogenesis, and the pentose phosphate pathways. Since growth on acetate induces oxidative stress, the activities of some antioxidant enzymes were also assayed. The results show that cells grown in acetate plus nitrate did not increase the amount of LD, but increased the activities of glutathione reductase, glutathione peroxidase, catalase, and superoxide dismutase, suggesting a higher production of reactive oxygen species in cells growing in acetate. The phosphofructokinase-1 (PFK1) was the enzyme with the lowest specific activity in the glycolytic pathway, suggesting that PFK1 controls the flux of glycolysis. As expected, the activity of the phosphoenolpyruvate carboxykinase, a gluconeogenic enzyme, was present only in the acetate condition. In summary, in the presence of acetate as the only carbon source, U. maydis synthesized fatty acids, which were directed into the production of phospholipids and neutral lipids for biomass generation, but without any excessive accumulation of LD.
- Published
- 2023
- Full Text
- View/download PDF
7. Isolation of Mitochondria from Ustilago maydis Protoplasts
- Author
-
Juan Pablo Pardo, Guadalupe Guerra-Sánchez, Oscar Flores-Herrera, and Lucero Romero-Aguilar
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Ustilago maydis, a basidiomycete that infects Zea mays, is one of the top ten fungal models for studying DNA repair, signal transduction pathways, and dimorphic transitions, among other processes. From a metabolic point of view, U. maydis lacks fermentative capacity, pointing to mitochondria as a key player in central metabolism. Oxidative phosphorylation, synthesis of heme groups, Krebs cycle, β-oxidation of fatty acids, and synthesis of amino acids are some of the processes that take place in mitochondria. Given the importance of this organelle in eukaryotic cells in general, and in fungal cells in particular, we present a protocol for the isolation of U. maydis mitochondria based on the enzymatic disruption of U. maydis cell wall and differential centrifugation. The method can easily be extrapolated to other fungal species, by using appropriate lytic enzymes.
- Published
- 2022
- Full Text
- View/download PDF
8. The Mitochondrial Alternative Oxidase in Ustilago maydis Is Not Involved in Response to Oxidative Stress Induced by Paraquat
- Author
-
Lucero Romero-Aguilar, Héctor Vázquez-Meza, Guadalupe Guerra-Sánchez, Oscar Ivan Luqueño-Bocardo, and Juan Pablo Pardo
- Subjects
alternative oxidase ,glutathione ,oxidative stress ,paraquat ,Ustilago maydis ,Biology (General) ,QH301-705.5 - Abstract
It has been shown that the alternative oxidase in mitochondria of fungi and plants has important functions in the response against stress conditions, although their role in some organisms is still unknown. This is the case of Ustilago maydis. There is no evidence of the participation of the U. maydis Aox1 in stressful conditions such as desiccation, high or low temperature, and low pH, among others. Therefore, in this work, we studied the role of the U. maydis Aox1 in cells exposed to oxidative stress induced by methyl viologen (paraquat). To gain insights into the role of this enzyme, we took advantage of four strains: the FB2 wild-type, a strain without the alternative oxidase (FB2aox1Δ), other with the Aox1 fused to the Gfp under the control of the original promoter (FB2aox1-Gfp), and one expressing constitutively de Aox1-Gfp (FB2Potef:aox1-Gfp). Cells were incubated for various times in the presence of 1 mM paraquat and growth, replicative capacities, mitochondrial respiratory activity, Aox1 capacity, and the activities of several antioxidant enzymes (catalase, glutathione peroxidase, glutathione reductase, and superoxide dismutase) were assayed. The results show that (1) the response of U. maydis against oxidative stress was the same in the presence or absence of the Aox1; (2) the activities of the antioxidant enzymes remained constant despite the oxidative stress; and (3) there was a decrease in the GSH/GSSG ratio in U. maydis cells incubated with paraquat.
- Published
- 2022
- Full Text
- View/download PDF
9. Functional Analysis of the Plasma Membrane H+-ATPases of Ustilago maydis
- Author
-
Melissa Vázquez-Carrada, Michael Feldbrügge, Dario Rafael Olicón-Hernández, Guadalupe Guerra-Sánchez, and Juan Pablo Pardo
- Subjects
H+-ATPases ,P-type ATPases ,plasma membrane ,proton pump ATPase ,Ustilago maydis ,Biology (General) ,QH301-705.5 - Abstract
Plasma membrane H+-ATPases of fungi, yeasts, and plants act as proton pumps to generate an electrochemical gradient, which is essential for secondary transport and intracellular pH maintenance. Saccharomyces cerevisiae has two genes (PMA1 and PMA2) encoding H+-ATPases. In contrast, plants have a larger number of genes for H+-ATPases. In Ustilago maydis, a biotrophic basidiomycete that infects corn and teosinte, the presence of two H+-ATPase-encoding genes has been described, one with high identity to the fungal enzymes (pma1, UMAG_02851), and the other similar to the plant H+-ATPases (pma2, UMAG_01205). Unlike S. cerevisiae, these two genes are expressed jointly in U. maydis sporidia. In the present work, mutants lacking one of these genes (Δpma1 and Δpma2) were used to characterize the role of each one of these enzymes in U. maydis physiology and to obtain some of their kinetic parameters. To approach this goal, classical biochemical assays were performed. The absence of any of these H+-ATPases did not affect the growth or fungal basal metabolism. Membrane potential tests showed that the activity of a single H+-ATPase was enough to maintain the proton-motive force. Our results indicated that in U. maydis, both H+-ATPases work jointly in the generation of the electrochemical proton gradient, which is important for secondary transport of metabolites and regulation of intracellular pH.
- Published
- 2022
- Full Text
- View/download PDF
10. DnmA and FisA Mediate Mitochondria and Peroxisome Fission, and Regulate Mitochondrial Function, ROS Production and Development in Aspergillus nidulans
- Author
-
Verónica Garrido-Bazán, Juan Pablo Pardo, and Jesús Aguirre
- Subjects
mitochondrial dynamics ,mitochondrial inheritance ,mitoflash ,cell differentiation ,mitochondrial fission ,Microbiology ,QR1-502 - Abstract
The dynamin-like protein Drp1 and its receptor Fis-1 are required for mitochondria and peroxisome fission in animal and yeast cells. Here, we show that in the fungus Aspergillus nidulans the lack of Drp1 and Fis-1 homologs DnmA and FisA has strong developmental defects, leading to a notable decrease in hyphal growth and asexual and sexual sporulation, with some of these defects being aggravated or partially remediated by different carbon sources. Although both DnmA and FisA, are essential for mitochondrial fission, participate in peroxisomal division and are fully required for H2O2-induced mitochondrial division, they also appear to play differential functions. Despite their lack of mitochondrial division, ΔdnmA and ΔfisA mutants segregate mitochondria to conidiogenic cells and produce viable conidia that inherit a single mitochondrion. During sexual differentiation, ΔdnmA and ΔfisA mutants develop fruiting bodies (cleistothecia) that differentiate excessive ascogenous tissue and a reduced number of viable ascospores. ΔdnmA and ΔfisA mutants show decreased respiration and notably high levels of mitochondrial reactive oxygen species (ROS), which likely correspond to superoxide. Regardless of this, ΔdnmA mutants can respond to an external H2O2 challenge by re-localizing the MAP kinase-activated protein kinase (MAPKAP) SrkA from the cytoplasm to the nuclei. Our results show that ROS levels regulate mitochondrial dynamics while a lack of mitochondrial fission results in lower respiration, increased mitochondrial ROS and developmental defects, indicating that ROS, mitochondrial division and development are critically interrelated processes.
- Published
- 2020
- Full Text
- View/download PDF
11. Expression of alternative NADH dehydrogenases (NDH‐2) in the phytopathogenic fungus Ustilago maydis
- Author
-
Deyamira Matuz‐Mares, Genaro Matus‐Ortega, Christian Cárdenas‐Monroy, Lucero Romero‐Aguilar, Juan Carlos Villalobos‐Rocha, Héctor Vázquez‐Meza, Guadalupe Guerra‐Sánchez, Antonio Peña‐Díaz, and Juan Pablo Pardo
- Subjects
alternative NAD(P)H dehydrogenases ,corn smut fungi ,electron transport chain ,gene expression ,NADH/NADPH quinone oxidoreductase ,Ustilago maydis ,Biology (General) ,QH301-705.5 - Abstract
Type 2 alternative NADH dehydrogenases (NDH‐2) participate indirectly in the generation of the electrochemical proton gradient by transferring electrons from NADH and NADPH into the ubiquinone pool. Due to their structural simplicity, alternative NADH dehydrogenases have been proposed as useful tools for gene therapy of cells with defects in the respiratory complex I. In this work, we report the presence of three open reading frames, which correspond to NDH‐2 genes in the genome of Ustilago maydis. These three genes were constitutively transcribed in cells cultured in YPD and minimal medium with glucose, ethanol, or lactate as carbon sources. Proteomic analysis showed that only two of the three NDH‐2 were associated with isolated mitochondria in all culture media. Oxygen consumption by permeabilized cells using NADH or NADPH was different for each condition, opening the possibility of posttranslational regulation. We confirmed the presence of both external and internal NADH dehydrogenases, as well as an external NADPH dehydrogenase insensitive to calcium. Higher oxygen consumption rates were observed during the exponential growth phase, suggesting that the activity of NADH and NADPH dehydrogenases is coupled to the dynamics of cell growth.
- Published
- 2018
- Full Text
- View/download PDF
12. Model of Disc Degeneration in Rat Tail Induced Through a Vascular Isolation of Vertebral Endplates
- Author
-
Héctor Fernández-Susavila, Juan Pablo Pardo-Seco, Ramón Iglesias-Rey, Tomás Sobrino, Francisco Campos, and Máximo Alberto Díez-Ulloa
- Subjects
spine ,intervertebral disc ,degeneration ,mri ,model ,vascular isolation ,translational ,Surgery ,RD1-811 - Abstract
Back pain is a major health problem. The degenerative cascade of the spine begins in the intervertebral disc, due to an impairment in the blood supply through the vertebral endplates. Our objective was to develop a novel disc degeneration model based on these premises, akin to the process in humans, in contrast to other proposed models (puncture, enzyme injection, aberrant loads,…) Material and methods: 37 Sprague-Dawley rats, 2 arms: (a) histological (n = 17, one died), en- bloc sections, Van Gieson staining, (Nisimura-Mochida criteria) and also collagen VI staining (tissue oxidative stress), four animals were euthanized every 2 weeks (2-8); and (b) imaging (n = 20, six wound sloughs), MRI 9.4 Tesla protocol, sequential disc volumetric analysis (24 h-8 weeks) in all animals. Disc degeneration was induced by means of vascular isolation of tail discs endplates either from one side or both. Results: Isolation from both sides caused a progressive degeneration of the disc (p < 0.001 vs. controls), bigger than isolation from one side (p < 0.01 vs. both sides and p < 0.05 vs. controls), as rated by volumetric reduction; furthermore, tissue structural changes (Nisimura-Mochida) and collagen VI deposition confirmed these results. Conclusion: the model here described represents a novel and translational tool that reproduces the intervertebral disc degeneration in a similar way to that taking place in human beings.
- Published
- 2018
- Full Text
- View/download PDF
13. Physiological changes of growth hormone during lactation in pup rats artificially reared.
- Author
-
Cesar G Toriz, Angel I Melo, Carmen Solano-Agama, Edgar Giovanhi Gómez-Domínguez, Ma de Los Angeles Martínez-Muñoz, Jorge Castañeda-Obeso, Eunice Vera-Aguilar, Elsa Liliana Aguirre-Benítez, Lucero Romero-Aguilar, Margarita González-Del Pliego, Ismael Jiménez-Estrada, Maricela Luna, Juan Pablo Pardo, Javier Camacho, and Maria Eugenia Mendoza-Garrido
- Subjects
Medicine ,Science - Abstract
During the lactation period, rat pups are fed by the dam, and the patterns of mother-pup interaction change during this period. Additionally, there are changes in feeding; first, mother´s milk is the only food needed for sustenance, and later, it is combined with solid food and water. GH serum concentrations depend on both maternal-pup interaction and energy metabolism. In the artificial rearing (AR) procedure, pups are deprived of mother-pup interaction, and the feeding pattern is controlled. This rearing paradigm has been used in rats to analyze the effects of maternal deprivation on social behavior. In the present study, we analyzed the variation in GH, acylated ghrelin and IGF-1 serum concentrations throughout the lactation period in AR pups. At pnd7, the maternal rearing (MR) pups responded to a 4 h fast with a drop in GH serum concentration, which is a well-known response to maternal deprivation. GH serum levels in the AR pups did not change, suggesting an adaptation phenomenon. A dopamine inhibitory effect of GH secretion was observed in pnd7 cultured somatotropes, suggesting dopamine regulation of GH secretion at this age. Acylated ghrelin serum levels in the AR pups showed an inverted pattern compared to that in the MR pups, which was related to the artificial feeding pattern. IGF-1 serum levels were lower in the AR pups than in MR pups, which was associated with hepatic GH resistance and with low Igf1 mRNA expression at pnd7. Interestingly, at pnd14, both pup groups showed high hepatic Igf1 mRNA expression but low IGF-1 serum levels, and this was inverted at pnd21. However, serum glucose levels were lower in the AR pups at pnd14 but reached the same levels as the MR pups at pnd21. Moreover, hepatomegaly and higher hepatic GH-receptor levels were observed in the AR pups at pnd21, which was in agreement with an absence of a solid food meal. During AR, the pups lost the maternal interaction-stimulated GH secretion, which correlated with lower IGF-1 serum levels during the first week of postnatal development. Later, the AR pups exhibited hepatic responses, in order to satisfy the metabolic demand for the normal weaning, with low carbohydrates levels in their meal.
- Published
- 2019
- Full Text
- View/download PDF
14. Carbon and Nitrogen Sources Have No Impact on the Organization and Composition of Ustilago maydis Respiratory Supercomplexes
- Author
-
Deyamira Matuz-Mares, Oscar Flores-Herrera, Guadalupe Guerra-Sánchez, Lucero Romero-Aguilar, Héctor Vázquez-Meza, Genaro Matus-Ortega, Federico Martínez, and Juan Pablo Pardo
- Subjects
respiratory complexes ,mitochondrial supercomplexes ,Ustilago maydis mitochondria ,Biology (General) ,QH301-705.5 - Abstract
Respiratory supercomplexes are found in mitochondria of eukaryotic cells and some bacteria. A hypothetical role of these supercomplexes is electron channeling, which in principle should increase the respiratory chain efficiency and ATP synthesis. In addition to the four classic respiratory complexes and the ATP synthase, U. maydis mitochondria contain three type II NADH dehydrogenases (NADH for reduced nicotinamide adenine dinucleotide) and the alternative oxidase. Changes in the composition of the respiratory supercomplexes due to energy requirements have been reported in certain organisms. In this study, we addressed the organization of the mitochondrial respiratory complexes in U. maydis under diverse energy conditions. Supercomplexes were obtained by solubilization of U. maydis mitochondria with digitonin and separated by blue native polyacrylamide gel electrophoresis (BN-PAGE). The molecular mass of supercomplexes and their probable stoichiometries were 1200 kDa (I1:IV1), 1400 kDa (I1:III2), 1600 kDa (I1:III2:IV1), and 1800 kDa (I1:III2:IV2). Concerning the ATP synthase, approximately half of the protein is present as a dimer and half as a monomer. The distribution of respiratory supercomplexes was the same in all growth conditions. We did not find evidence for the association of complex II and the alternative NADH dehydrogenases with other respiratory complexes.
- Published
- 2021
- Full Text
- View/download PDF
15. Biological Control of Thielaviopsis paradoxa and Colletotrichum gloeosporioides by the Extracellular Enzymes of Wickerhamomyces anomalus
- Author
-
Luis Fernando Zepeda-Giraud, Dario Rafael Olicón-Hernández, Juan Pablo Pardo, Minerva Georgina Araiza Villanueva, and Guadalupe Guerra-Sánchez
- Subjects
glucanase ,Wickerhamomyces anomalus ,biocontrol ,Thielaviopsis paradoxa ,Colletotricum gloeoesporioides ,Agriculture (General) ,S1-972 - Abstract
An alternative to chemical fungicides in post-harvest diseases are the use of biocontrol agents and their extracellular products against phytopathogens. Two relevant agents in post-harvest infections are Thielaviopsis paradoxa and Colletotrichum gloeosporioides, causing large economic losses in cacao, pineapple, and avocado during storage. In this work, we evaluated the effect of Wickerhamomyces anomalus, an effective biocontrol agent, against these filamentous fungi, focusing on the production of extracellular enzymes and their effect on fungal growth and germination. Moreover, we evaluated the use of inactivated fungal biomass as an inducer in complete (Potato Dextrose Agar and Yeast Peptone Dextrose) and minimal culture media. The antagonistic effect of W anomalus on the growth of both phytopathogens was also studied. The extracellular enzymes in YPD cultures, using T. paradoxa inactivated biomass as the best inducer, were capable of inhibiting the germination of both phytopathogens. In minimal media, only the production of a 30 kDa glucanase with activity against laminarin was observed. The enzyme was effective against the spore germination of T. paradoxa. In post-harvest crop protection tests, growth inhibition of T. paradoxa was observed using the cell-free enzyme extract, which is a promising system to protect cocoa fruits from T. paradoxa during post-harvest.
- Published
- 2020
- Full Text
- View/download PDF
16. Del contractualismo igualitario al desarrollo humano diferencial: una perspectiva de justicia desde el enfoque de capacidades humanas en el proceso de retorno a la vida civil de desmovilizados en Colombia
- Author
-
Johan Andrés Nieto Bravo and Juan Pablo Pardo Rodríguez
- Subjects
alcohol ,adolescents ,consumption patterns ,family dynamics ,qualitative research ,History of scholarship and learning. The humanities ,AZ20-999 ,Social Sciences ,Social sciences (General) ,H1-99 - Abstract
Los procesos de retorno a la vida civil de desmovilizados en Colombia han sido fuertemente influidos por el contractualismo, como una doctrina basada en el principio de igualdad, que ha dado un piso filosófico de tipo trascendental a la creación de los Estados modernos y a las políticas de reintegración social. Sin embargo, dicha perspectiva teórica se ve rebatida por el creciente enfoque diferencial del desarrollo humano, que centra la mirada en las personas desmovilizadas y en la formación de sus capacidades, con el fin de movilizarlos hacia la legalidad, desde un ejercicio protagónico de su identidad ciudadana. De esta manera, las apuestas políticas actuales, a la luz de una nueva frontera de la justicia internacional, requieren hacer siempre nuevos procesos de acompañamiento de estos sujetos, con el fin de empoderarlos en la importante labor de la construcción social.
- Published
- 2018
- Full Text
- View/download PDF
17. The mitochondrial alternative oxidase Aox1 is needed to cope with respiratory stress but dispensable for pathogenic development in Ustilago maydis.
- Author
-
Christian A Cárdenas-Monroy, Thomas Pohlmann, Gabriela Piñón-Zárate, Genaro Matus-Ortega, Guadalupe Guerra, Michael Feldbrügge, and Juan Pablo Pardo
- Subjects
Medicine ,Science - Abstract
The mitochondrial alternative oxidase is an important enzyme that allows respiratory activity and the functioning of the Krebs cycle upon disturbance of the respiration chain. It works as a security valve in transferring excessive electrons to oxygen, thereby preventing potential damage by the generation of harmful radicals. A clear biological function, besides the stress response, has so far convincingly only been shown for plants that use the alternative oxidase to generate heat to distribute volatiles. In fungi it was described that the alternative oxidase is needed for pathogenicity. Here, we investigate expression and function of the alternative oxidase at different stages of the life cycle of the corn pathogen Ustilago maydis (Aox1). Interestingly, expression of Aox1 is specifically induced during the stationary phase suggesting a role at high cell density when nutrients become limiting. Studying deletion strains as well as overexpressing strains revealed that Aox1 is dispensable for normal growth, for cell morphology, for response to temperature stress as well as for filamentous growth and plant pathogenicity. However, during conditions eliciting respiratory stress yeast-like growth as well as hyphal growth is strongly affected. We conclude that Aox1 is dispensable for the normal biology of the fungus but specifically needed to cope with respiratory stress.
- Published
- 2017
- Full Text
- View/download PDF
18. Response of Ustilago maydis against the Stress Caused by Three Polycationic Chitin Derivatives
- Author
-
Dario Rafael Olicón-Hernández, Cristina Uribe-Alvarez, Salvador Uribe-Carvajal, Juan Pablo Pardo, and Guadalupe Guerra-Sánchez
- Subjects
chitosan ,oligochitosan ,glycol-chitosan ,Ustilago maydis ,stress response ,Organic chemistry ,QD241-441 - Abstract
Chitosan is a stressing molecule that affects the cells walls and plasma membrane of fungi. For chitosan derivatives, the action mode is not clear. In this work, we used the yeast Ustilago maydis to study the effects of these molecules on the plasma membrane, focusing on physiologic and stress responses to chitosan (CH), oligochitosan (OCH), and glycol-chitosan (GCH). Yeasts were cultured with each of these molecules at 1 mg·mL−1 in minimal medium. To compare plasma membrane damage, cells were cultivated in isosmolar medium. Membrane potential (Δψ) as well as oxidative stress were measured. Changes in the total plasma membrane phospholipid and protein profiles were analyzed using standard methods, and fluorescence-stained mitochondria were observed. High osmolarity did not protect against CH inhibition and neither affected membrane potential. The OCH did produce higher oxidative stress. The effects of these molecules were evidenced by modifications in the plasma membrane protein profile. Also, mitochondrial damage was evident for CH and OCH, while GCH resulted in thicker cells with fewer mitochondria and higher glycogen accumulation.
- Published
- 2017
- Full Text
- View/download PDF
19. Mitochondrial Thioredoxin-Glutathione Reductase from Larval Taenia crassiceps (Cysticerci)
- Author
-
Alberto Guevara-Flores, Irene P. del Arenal, Guillermo Mendoza-Hernández, Juan Pablo Pardo, Oscar Flores-Herrera, and Juan L. Rendón
- Subjects
Infectious and parasitic diseases ,RC109-216 - Abstract
Mitochondrial thioredoxin-glutathione reductase was purified from larval Taenia crassiceps (cysticerci). The preparation showed NADPH-dependent reductase activity with either thioredoxin or GSSG, and was able to perform thiol/disulfide exchange reactions. At 25∘C specific activities were 437 ± 27 mU mg-1 and 840 ± 49 mU mg-1 with thioredoxin and GSSG, respectively. Apparent Km values were 0.87 ± 0.04 μM, 41 ± 6 μM and 19 ± 10 μM for thioredoxin, GSSG and NADPH, respectively. Thioredoxin from eukaryotic sources was accepted as substrate. The enzyme reduced H2O2 in a NADPH-dependent manner, although with low catalytic efficiency. In the presence of thioredoxin, mitochondrial TGR showed a thioredoxin peroxidase-like activity. All disulfide reductase activities were inhibited by auranofin, suggesting mTGR is dependent on selenocysteine. The reductase activity with GSSG showed a higher dependence on temperature as compared with the DTNB reductase activity. The variation of the GSSG- and DTNB reductase activities on pH was dependent on the disulfide substrate. Like the cytosolic isoform, mTGR showed a hysteretic kinetic behavior at moderate or high GSSG concentrations, but it was less sensitive to calcium. The enzyme was able to protect glutamine synthetase from oxidative inactivation, suggesting that mTGR is competent to contend with oxidative stress.
- Published
- 2010
- Full Text
- View/download PDF
20. Mercados como espelho
- Author
-
Juan Pablo Pardo-Guerra
- Subjects
Mercados ,Parentesco ,Relações ,Finanças ,Infraestruturas ,Sociology (General) ,HM401-1281 - Abstract
Resumo Este artigo interroga a conceitualização convencional dos mercados como redes, instituições e realizações performativas ao apresentá-los como espelhos culturais que refletem as idiossincrasias e modos de organização social de seus ambientes. Estendendo a metáfora weberiana do mercado como comunidades e combinando-a com recentes teorias antropológicas do parentesco, o artigo propõe compreender processos de mercado como espaços de produção de relações sociais em vez de transações meramente impessoais. Utilizando discussões a respeito de compensação e trocas nos mercados financeiros contemporâneos como um exemplo, o artigo defende repensar o papel e a ontologia dos mercados na vida moderna.
- Full Text
- View/download PDF
21. At the Crossroads of Sociology and STS
- Author
-
Rubio, Fernando Domínguez, primary and Guerra, Juan Pablo Pardo, additional
- Published
- 2023
- Full Text
- View/download PDF
22. The Quantified Scholar
- Author
-
Juan Pablo Pardo-Guerra
- Published
- 2022
- Full Text
- View/download PDF
23. La oxidasa alterna, una metaloproteína conservada en hongos
- Author
-
Lucero Romero-Aguilar, Oscar Ivan Luqueño-Bocardo, Guadalupe Guerra-Sánchez, Genaro Matus-Ortega, and Juan Pablo Pardo
- Subjects
General Mathematics - Abstract
La oxidasa alterna (AOX) es una metaloproteína monotópica que se encuentra unida a la cara interna de la membrana interna mitocondrial. Esta enzima cataliza la transferencia de electrones del ubiquinol al oxígeno con formación de agua como uno de los productos. Cuando la vía citocrómica se inhibe por la presencia de cianuro u otros agentes xenobióticos, la AOX permite el flujo de electrones del NADH al oxígeno y, por tanto, la actividad catabólica y anabólica del ciclo de Krebs. La AOX se encuentra en plantas, hongos, algunos protistas y metazoarios primitivos y se le ha atribuido la capacidad de conferir osmoprotección y resistencia al estrés oxidativo en las células. En esta revisión, se analiza la estructura de la enzima, se aborda su participación en la respuesta ante el estrés osmótico y oxidativo en hongos, su influencia en la síntesis de ATP y la regulación de su expresión genética.
- Published
- 2022
- Full Text
- View/download PDF
24. Boundary-making in Conservation: The Configuration of Environmental Ontologies in the Andean Páramos
- Author
-
Rubio, Fernando Domínguez, Guerra, Juan Pablo Pardo, and Castillo Estupinan, Camilo
- Abstract
Unique high Andean ecosystems in South America as the “páramos” have been the object of conservation plans in the last decade. In Colombia, this spurred heated discussions when their conservation was promoted through the cartographic demarcation of their boundaries: what counts as “páramo” and what kind of activities should be allowed there have been highly contested topics. As part of a multisited ethnography that studies the case of páramos conservation with biologists, geographers, and campesinos in the Sumapaz region of Colombia, I argue that the analysis of boundaries is a crucial matter in the unfolding of conservation. By analyzing how boundaries are configured, coordinated, and contested in the conservation of páramos in Colombia, I advance an ontological approach to boundary-making as practices embedded in the concrete transformation of environmental worlds through the involvement of multiple agents such as humans, plants, and technologies.
- Published
- 2023
- Full Text
- View/download PDF
25. The Intersections between Sociology and STS: A Big Data Approach
- Author
-
Rubio, Fernando Domínguez, Guerra, Juan Pablo Pardo, Amuchastegui, Maria, Birch, Kean, and Kaltenbrunner, Wolfgang
- Abstract
This paper charts the changing intersections between sociology and science and technology studies (STS) using computational textual analysis. We characterize this “quali-quantitative” approach as a Big Data method, as this calls attention to the commixture of textual and numeric data that characterizes Big Data. The term Big Data, too, calls attention to the increasing privatization of both data and data analytics tools. The data mining was done using a commercial analytics tool, IBM SPSS Modeler, that to the best of our knowledge has not yet been used for STS or sociological research. The identification of intersections occurred as part of a larger project to analyze political-economic and epistemic changes within STS, focusing on academic publishing. These epistemic changes were identified qualitatively, through 76 interviews with STS scholars, and quantitatively, through a computational analysis of three decades of STS journals (1990–2019).
- Published
- 2023
- Full Text
- View/download PDF
26. Exploring the Making of the Economy in South Korea: A Venue for Sociology and Science and Technology Studies
- Author
-
Rubio, Fernando Domínguez, Guerra, Juan Pablo Pardo, and Lee, Kyunghwan
- Abstract
Development is a strategic research site to initiate productive conversation between sociology and Science and Technology Studies (STS), because, on one hand, development is a significant social change process, and simultaneously, on the other hand, it is a “contact zone” where diverse social practices from the West and the Global South meet and negotiate with one another. With the case study of the development in South Korea, this project will demonstrate how postcolonial studies of science and technology offer opportunities for innovations in development studies. The lens of STS contributes to elucidating how each development practice could be implemented and compete and negotiate in constituting “development assemblage” in South Korea.
- Published
- 2023
- Full Text
- View/download PDF
27. Climate Silence in Sociology? How Elite American Sociology, Environmental Sociology, and Science and Technology Studies Treat Climate Change
- Author
-
Rubio, Fernando Domínguez, Guerra, Juan Pablo Pardo, Scoville, Caleb, and McCumber, Andrew
- Abstract
Climate change is among the most pressing problems of our time, yet it remains a marginal topic in sociology. This study draws on citation network analysis, qualitative coding, and computational text analysis of articles published between 2015 and 2020 in select journals in U.S. elite sociology, environmental sociology, and science and technology studies (STS) to better understand differences and similarities in how these (sub)fields approach—or ignore—climate change. We map the structural relations of the research on climate change in these (sub)fields and analyze patterns in the substantive and theoretical engagement with the topic. Building on our analysis, we conclude by suggesting potential paths for stimulating further climate change research at the intersection of environmental sociology and STS and to propose tentative strategies for researchers to bring climate change into the sociological mainstream.
- Published
- 2023
- Full Text
- View/download PDF
28. Environing Innovation: Toward an Ecological Pragmatism of Scientific Practice
- Author
-
Rubio, Fernando Domínguez, Guerra, Juan Pablo Pardo, and Aviles, Natalie B.
- Abstract
Studies of scientific innovation that theorize the complex social and material influences on scientific inquiry and innovation can benefit from explicit theoretical attention to meso-level practices embedded in formal organizations. Combining insights separately developed by pragmatist perspectives in sociology and Science and Technology Studies (STS), I introduce an ecological pragmatist approach to scientific practice that helps account for the meso-level environments in which scientists innovate. To demonstrate the utility of this approach, I reanalyze classic works in sociology and STS on cancer research innovation to show how the distinct concerns for accountability in one formal organization—the U.S. National Cancer Institute—helped constitute the material and conceptual scaffolding that went on to shape individual innovations and macro-level institutional transformations. I conclude by suggesting ecological pragmatism offers a valuable perspective on recent efforts in sociology to conceptualize culture as cognition.
- Published
- 2023
- Full Text
- View/download PDF
29. Between Parasites and Angels: Sociology, Eurocentrism, and Michel Serres
- Author
-
Rubio, Fernando Domínguez, Guerra, Juan Pablo Pardo, and Gross, Benjamin
- Abstract
The relationship between science and technology studies (STS) and sociology has a long tradition of interconnection, yet one key influencer of STS, Michel Serres, has been underutilized. The interdisciplinarity of sociology makes it ideal for exploring Serres’ unique and elegant approach. This article will outline the blind spots in sociology caused by Eurocentric assumptions. Before examining the thinking of Michel Serres, he will be located in the broader STS and actor-network theory he influenced. Special attention will be given to Serres’ concepts of parasites and angels; key to his perspective on relations, communication, and their breakdown. This will then be used to trace relations and the objects constituted by those relations within several historical examples of Eurocentric parasitism. It will be contrasted with reflections on the author’s fieldwork and deployment of Serres’ ideas for a more connected, equitable, and communicative social science.
- Published
- 2023
- Full Text
- View/download PDF
30. Adaptation in the Presence of Exogeneous Information in an Artificial Financial Market.
- Author
-
José Luis Gordillo, Juan Pablo Pardo-Guerra, and Christopher R. Stephens
- Published
- 2004
- Full Text
- View/download PDF
31. Deletion of the ATP20 gene in Ustilago maydis produces an unstable dimer of F1FO-ATP synthase associated with a decrease in mitochondrial ATP synthesis and a high H2O2 production
- Author
-
Mercedes Esparza-Perusquía, Thorsten Langner, Giovanni García-Cruz, Michael Feldbrügge, Guadalupe Zavala, Juan Pablo Pardo, Federico Martínez, and Oscar Flores-Herrera
- Subjects
Biophysics ,Cell Biology ,Biochemistry - Published
- 2023
- Full Text
- View/download PDF
32. Deletion of the ATP20 gene in Ustilago maydis produces an unstable dimer of F
- Author
-
Mercedes, Esparza-Perusquía, Thorsten, Langner, Giovanni, García-Cruz, Michael, Feldbrügge, Guadalupe, Zavala, Juan Pablo, Pardo, Federico, Martínez, and Oscar, Flores-Herrera
- Abstract
The F
- Published
- 2022
33. Las funciones metabólicas, endocrinas y reguladoras de la expresión genética del lactato
- Author
-
Guadalupe Guerra-Sánchez, Juan Pablo Pardo-Vazquez, Lucero Romero-Aguilar, Federico Martínez-Montes, Maura Matus-Ortega, Genaro Matus-Ortega, Oscar Ivan Luqueno-Bocardo, and Katia Hernandez-Morfin
- Subjects
General Medicine - Abstract
Lactate is considered to be a waste metabolite produced during muscle fatigue. In contrast with this simplistic point of view, in this review we provide evidence of the multiple and complex functions of this metabolite. We show that: 1) lactate is the final product of the glycolysis regardless the oxygen concentration in the cell 2) lactate is part of two types of shuttle, one that functions in the intermembrane space of the mitochondrion, and another intercellular, which is responsible for feeding lactate to certain cell types, such as neurons or heart muscle, 3) in sperm,lactate is transported directly to the mitochondrial matrix and there it is oxidized to produce pyruvate and NADH, 4) in the liver, lactate participates in the oxidation of ethanol through the generation of hydrogen peroxide, 5) Depending on the cell line, lactate can function as anti-inflammatory agent (endocrine) and/or a regulator of gene expression. Keywords: Lactic fermentation; hypoxia; muscle fatigue; gene regulator
- Published
- 2020
- Full Text
- View/download PDF
34. Where are the market devices? Exploring the links among regulation, markets, and technology at the securities and exchange commission, 1935–2010
- Author
-
Juan Pablo Pardo-Guerra
- Subjects
History ,Market economy ,Scrutiny ,Sociology and Political Science ,Financial innovation ,Vetting ,Transparency (market) ,Corporate governance ,Financial market ,Financialization ,Commission ,Business - Abstract
This article examines regulation’s understanding of technology in American financial markets as means for rethinking the contours and institutional limits of governance in the age of financialization. The article identifies how the Securities and Exchange Commission perceived markets and their conceptual relation to technology throughout much of the long twentieth century by distilling the “ontologies” expressed by the agency’s leadership. Despite the fact that SEC’s commissioners recognized technologies as playing a central role in the market’s current and future operations, these were never effectively brought under regulatory scrutiny even when such action fell under the commission's jurisdictional remit. Rather than regulating technologies as constitutive of markets, the governance of the material devices of finance was discursively kept at arm's-length by presenting them as intractable objects that were external to financial innovation. Triangulating across several techniques of computational text analysis, this article shows how this interpretation of technology mirrored distinct shifts in how regulators understood markets, from being physical trading sites populated by agents that required vetting and certification to a distributed, multi-sited system surveilled through transparency and disclosure. Throughout these ontological transitions, technology’s inscrutability remained, limiting the capacity of the state and its regulatory agencies to shape the evolution of finance and its underlying infrastructures.
- Published
- 2020
- Full Text
- View/download PDF
35. Rapamycin induces morphological and physiological changes without increase in lipid content in Ustilago maydis
- Author
-
Oscar Flores-Herrera, Genaro Matus-Ortega, Lucero Romero-Aguilar, Guadalupe Guerra-Sánchez, James González, Eda Patricia Tenorio, Juan Pablo Pardo, and Miguel Tapia-Rodríguez
- Subjects
Antifungal Agents ,Ustilago ,Vacuole ,Mechanistic Target of Rapamycin Complex 1 ,Cell morphology ,Biochemistry ,Microbiology ,03 medical and health sciences ,Lipid droplet ,Organelle ,Genetics ,Molecular Biology ,Mitosis ,Triglycerides ,030304 developmental biology ,Sirolimus ,0303 health sciences ,biology ,030306 microbiology ,Cell growth ,Chemistry ,Lipid metabolism ,General Medicine ,Lipid Metabolism ,biology.organism_classification ,Lipids ,Cell biology ,Vacuoles ,lipids (amino acids, peptides, and proteins) - Abstract
The evolutionarily conserved serine/threonine kinase TOR recruits different subunits to assemble the Target of Rapamycin Complex 1 (TORC1), which is inhibited by rapamycin and regulates ribosome biogenesis, autophagy, and lipid metabolism by regulating the expression of lipogenic genes. In addition, TORC1 participates in the cell cycle, increasing the length of the G2 phase. In the present work, we investigated the effect of rapamycin on cell growth, cell morphology and neutral lipid metabolism in the phytopathogenic fungus Ustilago maydis. Inhibition of TORC1 by rapamycin induced the formation of septa that separate the nuclei that were formed after mitosis. Regarding neutral lipid metabolism, a higher accumulation of triacylglycerols was not detected, but the cells did contain large lipid bodies, which suggests that small lipid bodies became fused into big lipid droplets. Vacuoles showed a similar behavior as the lipid bodies, and double labeling with Blue-CMAC and BODIPY indicates that vacuoles and lipid bodies were independent organelles. The results suggest that TORC1 has a role in cell morphology, lipid metabolism, and vacuolar physiology in U. maydis.
- Published
- 2020
- Full Text
- View/download PDF
36. El aprendizaje basado en problemas como una estrategia didáctica para la educación médica
- Author
-
Kevin David Laguna Maldonado, Deyamira Matuz Mares, Teresa I. Fortoul van der Goes, and Juan Pablo Pardo Vázquez
- Subjects
03 medical and health sciences ,0302 clinical medicine ,020205 medical informatics ,0202 electrical engineering, electronic engineering, information engineering ,030212 general & internal medicine ,02 engineering and technology ,General Medicine ,Psychology - Abstract
Medical education faces new challenges in the development and acquisition of competencies in medical students, and although there are teaching strategies that can be helpful to reach this goal, PBL is one of the best strategies. In order to take advantage of PBL, it is important to understand the method and the various ways in which it has been implemented, as well as to identify the difficulties and disadvantages of PBL. The objective of this article is to review the PBL method, its advantages and disadvantages, and some frequent mistakes in its implementation, emphasizing the Mexican context. Key words: Medical education; PBL; didactic; competences
- Published
- 2020
- Full Text
- View/download PDF
37. The extended computational case method: a framework for research design
- Author
-
Juan Pablo Pardo Guerra
- Abstract
This paper considers the adoption of computational analysis within research designs modeled after the extended case method. Echoing calls to augment the power of contemporary researchers through the adoption of computational text analysis methods, we offer a framework for thinking about how such techniques can be integrated into quasi-ethnographic workflows to address structural sociological claims. We focus, in particular, on how this adoption of novel forms of evidence impacts corpus design and interpretation (which we tie to matters of casing), theoretical elaboration (which we associate to moving empirical claims across scales), and verification (which we see as a process of reflexive scaffolding of theoretical claims). We provide an example of the use of this framework through a study of the marketization of social scientific knowledge in the United Kingdom.
- Published
- 2022
- Full Text
- View/download PDF
38. Cultures of care? Animals and science in Britain
- Author
-
Juan Pablo Pardo-Guerra, Nathalie Nuyts, and Carrie Friese
- Subjects
Adult ,Animal Experimentation ,Male ,H Social Sciences (General) ,Sociology of scientific knowledge ,Sociology and Political Science ,media_common.quotation_subject ,Culture ,0507 social and economic geography ,Care ,Animal Welfare ,050905 science studies ,humanitarianism ,Laboratory ,Odds ,Sociology ,State (polity) ,Animals, Laboratory ,Surveys and Questionnaires ,national culture ,Animals ,Humans ,Production (economics) ,Quality (business) ,laboratory animals ,science ,media_common ,05 social sciences ,HM Sociology ,Environmental ethics ,Original Articles ,Organizational Culture ,Research Personnel ,United Kingdom ,Scholarship ,Science research ,Embodied cognition ,Other Papers ,Female ,Original Article ,0509 other social sciences ,civic epistemology ,050703 geography - Abstract
It is becoming increasingly common to hear life scientists say that high quality life science research relies upon high quality laboratory animal care. However, the idea that animal care is a crucial part of scientific knowledge production is at odds with previous social science and historical scholarship regarding laboratory animals. How are we to understand this discrepancy? To begin to address this question, this paper seeks to disentangle the values of scientists in identifying animal care as important to the production of high quality scientific research. To do this, we conducted a survey of scientists working in the United Kingdom who use animals in their research. The survey found that being British is associated with thinking that animal care is a crucial part of conducting high quality science. To understand this finding, we draw upon the concept of ‘civic epistemologies’ (Jasanoff 2005; Prainsack 2006) and argue that ‘animals’ and ‘care’ in Britain may converge in taken‐for‐granted assumptions about what constitutes good scientific knowledge. These ideas travel through things like state regulations or the editorial policies of science journals, but do not necessarily carry the embodied civic epistemology of ‘animals’ and ‘science’ from which such modes of regulating laboratory animal welfare comes.
- Published
- 2019
- Full Text
- View/download PDF
39. New Insights of Ustilago maydis as Yeast Model for Genetic and Biotechnological Research: A Review
- Author
-
Minerva Georgina Araiza-Villanueva, Dario Rafael Olicón-Hernández, Guadalupe Guerra-Sánchez, Elisabet Aranda, and Juan Pablo Pardo
- Subjects
Genetics, Microbial ,Corn smut ,0303 health sciences ,biology ,Yeast Model ,030306 microbiology ,Ustilago ,General Medicine ,Computational biology ,Fungus ,biology.organism_classification ,Models, Biological ,Zea mays ,Applied Microbiology and Biotechnology ,Microbiology ,Yeast ,Research model ,03 medical and health sciences ,Yeast form ,Metabolic Networks and Pathways ,Organism ,Biotechnology ,Plant Diseases ,030304 developmental biology - Abstract
The basidiomycete Ustilago maydis is a biotrophic organism responsible for corn smut disease. In recent years, it has become one of the most promising models for biochemical and biotechnological research due to advantages, such as rapid growth, and easy genetic manipulation. In some aspects, this yeast is more similar to complex eukaryotes, such as humans, compared to standard laboratory yeast models. U. maydis can be employed as a tool to explore physiological processes with more versatility than other fungi. Previously, U. maydis was only considered as a phytopathogenic fungus, but different studies have shown its potential as a research model. Therefore, numerous promising studies have focused on deepening our understanding of the natural interactions, enzyme production, and biotechnological capacity. In this review, we explore general characteristics of U. maydis, both as pathogenic and "innocuous" basidiomycete. Additionally, a comparison with other yeast models focusing on genetic, biochemical, and biotechnological research are analyzed, to emphasize the versatility, dynamism, and novelty that U. maydis has as a research model. In this review, we highlight the applications of the yeast form of the fungus; however, since the filamentous form is also of relevance, it is addressed in the present work, as well.
- Published
- 2019
- Full Text
- View/download PDF
40. A new measure of market inefficiency
- Author
-
José Luis Gordillo, Christopher R. Stephens, Juan Pablo Pardo-Guerra, Harald Benink, Tilburg Institute of Governance, Public Governance, and Research Group: Public Governance
- Subjects
efficient market hypothesis (EMH) ,Financial economics ,investor's behaviour ,excess trading returns ,Context (language use) ,Measure (mathematics) ,Efficient-market hypothesis ,Microeconomics ,Information asymmetry ,0502 economics and business ,Economics ,ddc:330 ,Capital asset pricing model ,Trading strategy ,investor’s behaviour ,050207 economics ,050208 finance ,05 social sciences ,Financial market ,behavioural finance ,Empirical measure ,HD61 ,Financial crisis ,Market data ,HG1-9999 ,Benchmark (computing) ,Portfolio ,Risk in industry. Risk management ,Volatility (finance) ,Inefficiency ,Finance - Abstract
An oft stated corrollary, sometimes taken as its definition, of the Efficient Markets Hypothesis is that in an efficient market it should not be possible to systematically make excess or abnormal returns. This begs the question of excess or abnormal relative to what? Traditional benchmarks either fail to distinguish between trading returns and market returns, or are dependent on an associated asset pricing model, thus leading to the joint-hypothesis problem. In this paper we discuss a purely empirical measure - Excess Trading Returns - derived from the difference in profits associated with an agent portfolio where one or more trades were executed relative to a Buy-and-Hold portfolio where they were not, the Buy-and-Hold benchmark being dynamic and/or unique to the agent. With this measure in hand we introduce the relative inefficiency associated with a pair of agents, agent groups or trading strategies and from this define an Inefficiency Matrix that can provide a complete empirical characterization of the inefficiencies inherent in an entire market.
- Published
- 2021
- Full Text
- View/download PDF
41. El ciclo de Randle, el precario vínculo entre azúcares y grasas
- Author
-
Guadalupe Guerra Sánchez, James González, Juan Pablo Pardo, Lucero Romero-Aguilar, Víctor Del Castillo-Falconi, Maura Matus-Ortega, and Genaro Matus-Ortega
- Abstract
La obesidad es un problema de salud global, asociada con enfermedades cardiovasculares. El análisis de la relación existente entre el elevado consumo de glucosa y la concomitante formación de depósitos de grasa, descrita por el ciclo de Randle, permitirá desarrollar una comprensión de los procesos metabólicos involucrados en el balance entre la formación y la degradación de los lípidos. Esta revisión tiene como objetivo, proporcionar una actualización del ciclo y de sus diferentes niveles de regulación, así como la participación de mTORC1 y la cinasa dependiente de AMP (AMPK) durante el estado postprandial y de ayuno.
- Published
- 2020
- Full Text
- View/download PDF
42. Levaduras adaptadas al frío: el tesoro biotecnológico de la Antártica
- Author
-
Juan Pablo Pardo, James González, Claudia Segal-Kischinevzky, Genaro Matus-Ortega, Lucero Romero-Aguilar, and Alejandro Flores-Alanis
- Subjects
0303 health sciences ,03 medical and health sciences ,030306 microbiology ,030304 developmental biology - Abstract
Las levaduras son organismos microscópicos que están distribuidos en toda la Tierra, de modo que algunas han adaptado su metabolismo para proliferar en ambientes extremos. Las levaduras que habitan en la Antártica son un grupo de microorganismos adaptados al frío que han sido poco estudiadas. En esta revisión se describen algunas de las adaptaciones metabólicas que les permiten habitar en ambientes extremos, por ejemplo, el de la Antártica. También se abordan las consideraciones relevantes para saber si una levadura es extremófila, así como los criterios utilizados para clasificar a las levaduras por crecimiento y temperatura. Además, se explica el papel de las vías de biosíntesis de carotenoides y lípidos que están involucradas en contrarrestar a las especies reactivas de oxígeno generadas por estrés oxidante en levaduras pigmentadas y oleaginosas del género Rhodotorula. La revisión también considera aspectos de investigación básica y la importancia de las levaduras oleaginosas de la Antártica para el desarrollo de algunas aplicaciones biotecnológicas.
- Published
- 2020
- Full Text
- View/download PDF
43. Amenazas y vulnerabilidades, que enfrentan los actores desmovilizados de las cárceles La Picota de Bogotá en su seguridad humana
- Author
-
Ayalá Eilat, Juan Pablo Pardo Rodríguez, Cristian René Cruz Galvis, and Henry Nicolás Gutiérrez Marulanda
- Abstract
El presente trabajo de investigacion, se ha pensado a partir de un grupo de actores desmovilizados del conflicto armado que se encuentran purgando sus penas en la Carcel la Picota de Bogota, con quienes se busca identificar las principales problematicas que van en contra de la Seguridad Humana. Para tal fin, se ha pensado el desarrollo de una investigacion cualitativa, de tipo etnografico y corte hermeneutico, en la cual se ha seleccionado como tecnica e instrumento de recoleccion de la informacion la entrevista semiestructurada y grupos focales; de igual manera, una vez recolectada la informacion, esta sera sistematizada y analizada a traves de la triangulacion de la informacion, para asi de esta manera, poder determinar, cuales son las principales problematicas sociales que afectan la Seguridad Humana, de los actores desmovilizados de grupos al margen de la ley, ubicados en la carcel La Picota de Bogota.
- Published
- 2020
- Full Text
- View/download PDF
44. The Randle cycle, the precarious link between sugars and fats
- Author
-
Genaro Matus-Ortega, Lucero Romero-Aguilar, James González, Guadalupe Guerra Sánchez, Maura Matus-Ortega, Víctor del Castillo-Falconi, and Juan Pablo Pardo
- Subjects
AMPK ,Biología ,dyslipidemia ,mTORC1 ,lipogenesis ,fructose - Abstract
"Obesity is a growing global health concern, closely related to cardiovascular diseases. Understanding the correlation between excessive sugar consumption and the formation of fat deposits, described in the Randle cycle, will allow us to have a better grasp on metabolic processes that disrupt the balance between fat formation and degradation processes. The goal of this review is to expand and update the information about the Randle cycle and describe their different levels of regulation. In addition, the participation of mTORC1 and the AMP dependent Kinase (AMPK) during the postprandial and fasting states is described."
- Published
- 2020
45. Expression of alternative<scp>NADH</scp>dehydrogenases (<scp>NDH</scp>‐2) in the phytopathogenic fungusUstilago maydis
- Author
-
Lucero Romero-Aguilar, Deyamira Matuz-Mares, Guadalupe Guerra-Sánchez, Héctor Vázquez-Meza, Christian A. Cárdenas-Monroy, Antonio Peña-Díaz, Juan Pablo Pardo, Juan Carlos Villalobos-Rocha, and Genaro Matus-Ortega
- Subjects
0301 basic medicine ,NADPH dehydrogenase ,biology ,Ustilago ,Chemistry ,Cell growth ,electron transport chain ,Ustilago maydis ,corn smut fungi ,biology.organism_classification ,Electron transport chain ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,030104 developmental biology ,Biochemistry ,Gene expression ,gene expression ,Post-translational regulation ,alternative NAD(P)H dehydrogenases ,Electrochemical gradient ,NADH/NADPH quinone oxidoreductase ,Gene ,Research Articles ,Research Article - Abstract
Type 2 alternative NADH dehydrogenases (NDH‐2) participate indirectly in the generation of the electrochemical proton gradient by transferring electrons from NADH and NADPH into the ubiquinone pool. Due to their structural simplicity, alternative NADH dehydrogenases have been proposed as useful tools for gene therapy of cells with defects in the respiratory complex I. In this work, we report the presence of three open reading frames, which correspond to NDH‐2 genes in the genome of Ustilago maydis. These three genes were constitutively transcribed in cells cultured in YPD and minimal medium with glucose, ethanol, or lactate as carbon sources. Proteomic analysis showed that only two of the three NDH‐2 were associated with isolated mitochondria in all culture media. Oxygen consumption by permeabilized cells using NADH or NADPH was different for each condition, opening the possibility of posttranslational regulation. We confirmed the presence of both external and internal NADH dehydrogenases, as well as an external NADPH dehydrogenase insensitive to calcium. Higher oxygen consumption rates were observed during the exponential growth phase, suggesting that the activity of NADH and NADPH dehydrogenases is coupled to the dynamics of cell growth.
- Published
- 2018
- Full Text
- View/download PDF
46. Desarme, desmovilización y reincorporación social en Colombia
- Author
-
Johan Andrés Nieto Bravo and Juan Pablo Pardo Rodríguez
- Subjects
General Medicine - Abstract
Las transformaciones epistemológicas desarrolladas sobre los procesos de desmovilización en Colombia retan a la escuela a abrir la discusión teórica sobre el actual tránsito de las lógicas de seguridad humana —ancladas en las tendencias jerarquizadas del bienestar y el asistencialismo— hacia nuevas alternativas de búsqueda en torno al desarrollo humano y el empoderamiento de los sujetos, desde la potencialización tanto de las necesidades fundamentales como de las capacidades humanas. Esto con el fin de gestar procesos de educación ciudadana en los que el desmovilizado adquiera un rol protagónico y activo. La presente investigación, desarrollada desde un enfoque cualitativo, problematiza desde la hermenéutica la discusión teórica a partir del análisis documental que reconstruye el devenir histórico de la desmovilización y la voz de aquellos que han acompañado estos procesos, lo cual resulta crucial en la construcción del nuevo país.
- Published
- 2018
- Full Text
- View/download PDF
47. The Quantified Scholar : How Research Evaluations Transformed the British Social Sciences
- Author
-
Juan Pablo Pardo-Guerra and Juan Pablo Pardo-Guerra
- Subjects
- Educational evaluation--Great Britain--Management, Social sciences--Study and teaching (Higher)--Research--Great Britain, Higher education and state--Great Britain
- Abstract
Since 1986, the British government, faced with dwindling budgets and growing calls for public accountability, has sought to assess the value of scholarly work in the nation's universities. Administrators have periodically evaluated the research of most full-time academics employed in British universities, seeking to distribute increasingly scarce funding to those who use it best. How do such attempts to quantify the worth of knowledge change the nature of scholarship?Juan Pablo Pardo-Guerra examines the effects of quantitative research evaluations on British social scientists, arguing that the mission to measure academic excellence resulted in less diversity and more disciplinary conformity. Combining interviews and original computational analyses, The Quantified Scholar provides a compelling account of how scores, metrics, and standardized research evaluations altered the incentives of scientists and administrators by rewarding forms of scholarship that were closer to established disciplinary canons. In doing so, research evaluations amplified publication hierarchies and long-standing forms of academic prestige to the detriment of diversity. Slowly but surely, they reshaped academic departments, the interests of scholars, the organization of disciplines, and the employment conditions of researchers.Critiquing the effects of quantification on the workplace, this book also presents alternatives to existing forms of evaluation, calling for new forms of vocational solidarity that can challenge entrenched inequality in academia.
- Published
- 2022
48. Structural and kinetics characterization of the F1F0-ATP synthase dimer. New repercussion of monomer-monomer contact
- Author
-
Juan Pablo Pardo, Mercedes Esparza-Perusquía, Guillermo Mendoza-Hernández, Sofia Olvera-Sanchez, Oscar Flores-Herrera, and Federico Martínez
- Subjects
0301 basic medicine ,Oligomycin ,030102 biochemistry & molecular biology ,ATP synthase ,biology ,Stereochemistry ,Chemistry ,Protein subunit ,Dimer ,Kinetics ,Biophysics ,Cell Biology ,Oxidative phosphorylation ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Monomer ,ATP hydrolysis ,biology.protein - Abstract
Ustilago maydis is an aerobic basidiomycete that fully depends on oxidative phosphorylation for its supply of ATP, pointing to mitochondria as a key player in the energy metabolism of this organism. Mitochondrial F1F0-ATP synthase occurs in supramolecular structures. In this work, we isolated the monomer (640kDa) and the dimer (1280kDa) and characterized their subunit composition and kinetics of ATP hydrolysis. Mass spectrometry revealed that dimerizing subunits e and g were present in the dimer but not in the monomer. Analysis of the ATPase activity showed that both oligomers had Michaelis-Menten kinetics, but the dimer was 7 times more active than the monomer, while affinities were similar. The dimer was more sensitive to oligomycin inhibition, with a Ki of 24nM, while the monomer had a Ki of 169nM. The results suggest that the interphase between the monomers in the dimer state affects the catalytic efficiency of the enzyme and its sensitivity to inhibitors.
- Published
- 2017
- Full Text
- View/download PDF
49. Lipid droplets accumulation and other biochemical changes induced in the fungal pathogen Ustilago maydis under nitrogen-starvation
- Author
-
Juan Pablo Pardo, Marco Antonio Juárez Oropeza, Lucero Romero Aguilar, Oscar Ivan Luqueño Bocardo, Mónica Montero Lomelí, and Guadalupe Guerra Sánchez
- Subjects
0301 basic medicine ,Nitrogen ,Ustilago ,Malic enzyme ,Context (language use) ,Glucosephosphate Dehydrogenase ,Biochemistry ,Microbiology ,03 medical and health sciences ,Malate Dehydrogenase ,Multienzyme Complexes ,Lipid droplet ,Genetics ,Lyase activity ,Molecular Biology ,Triglycerides ,chemistry.chemical_classification ,biology ,Phosphogluconate Dehydrogenase ,Fatty Acids ,Oxo-Acid-Lyases ,Lipid metabolism ,Lipid Droplets ,General Medicine ,Metabolism ,biology.organism_classification ,Carbon ,Isocitrate Dehydrogenase ,030104 developmental biology ,Enzyme ,chemistry ,Fatty Acid Synthases ,Oxidation-Reduction - Abstract
In many organisms, the growth under nitrogen-deprivation or a poor nitrogen source impacts on the carbon flow distribution and causes accumulation of neutral lipids, which are stored as lipid droplets (LDs). Efforts are in progress to find the mechanism of LDs synthesis and degradation, and new organisms capable of accumulating large amounts of lipids for biotechnological applications. In this context, when Ustilago maydis was cultured in the absence of a nitrogen source, there was a large accumulation of lipid bodies containing mainly triacylglycerols. The most abundant fatty acids in lipid bodies at the stationary phase were palmitic, linoleic, and oleic acids, and they were synthesized de novo by the fatty-acid synthase. In regard to the production of NADPH for the synthesis of fatty acids, the cytosolic NADP+-dependent isocitrate dehydrogenase and the glucose-6-phosphate and 6-phosphogluconate dehydrogenases couple showed the highest specific activities, with a lower activity of the malic enzyme. The ATP-citrate lyase activity was not detected in any of the culture conditions, which points to a different mechanism for the transfer of acetyl-CoA into the cytosol. Protein and RNA contents decreased when U. maydis was grown without a nitrogen source. Due to the significant accumulation of triacylglycerols and the particular composition of fatty acids, U. maydis can be considered an alternative model for biotechnological applications.
- Published
- 2017
- Full Text
- View/download PDF
50. The Power of Invisibility
- Author
-
Juan Pablo Pardo-Guerra
- Subjects
Power (social and political) ,Invisibility ,business.industry ,Electrical engineering ,Sociology ,business - Published
- 2019
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.