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12. Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus.

Author

Miyauchi, Shingo, Hage, Hayat, Drula, Elodie, Lesage-Meessen, Laurence, Berrin, Jean-Guy, Navarro, David, Favel, Anne, Chaduli, Delphine, Grisel, Sacha, Haon, Mireille, Piumi, François, Levasseur, Anthony, Lomascolo, Anne, Ahrendt, Steven, Barry, Kerrie, LaButti, Kurt, Chevret, Didier, Daum, Chris, Mariette, Jérôme, Klopp, Christophe, Cullen, Daniel, de Vries, Ronald, Gathman, Allen, Hainaut, Matthieu, Henrissat, Bernard, Hildén, Kristiina, Kües, Ursula, Lilly, Walt, Mäkelä, Miia, Martinez, Angel, Morel-Rouhier, Mélanie, Morin, Emmanuelle, Pangilinan, Jasmyn, Ram, Arthur, Wösten, Han, Ruiz-Dueñas, Francisco, Record, Eric, Rosso, Marie-Noëlle, Grigoriev, Igor, Lipzen, Anna, and Riley, Robert

Subjects
CAZyme, Class II Peroxidase, lignocellulose, lytic polysaccharide monooxygenase, wood decay, Carbohydrate Dehydrogenases, Cellulose, Fungal Proteins, Genome, Fungal, Lignin, Phylogeny, Pycnoporus, Wood
Abstract

White-rot (WR) fungi are pivotal decomposers of dead organic matter in forest ecosystems and typically use a large array of hydrolytic and oxidative enzymes to deconstruct lignocellulose. However, the extent of lignin and cellulose degradation may vary between species and wood type. Here, we combined comparative genomics, transcriptomics and secretome proteomics to identify conserved enzymatic signatures at the onset of wood-decaying activity within the Basidiomycota genus Pycnoporus. We observed a strong conservation in the genome structures and the repertoires of protein-coding genes across the four Pycnoporus species described to date, despite the species having distinct geographic distributions. We further analysed the early response of P. cinnabarinus, P. coccineus and P. sanguineus to diverse (ligno)-cellulosic substrates. We identified a conserved set of enzymes mobilized by the three species for breaking down cellulose, hemicellulose and pectin. The co-occurrence in the exo-proteomes of H2O2-producing enzymes with H2O2-consuming enzymes was a common feature of the three species, although each enzymatic partner displayed independent transcriptional regulation. Finally, cellobiose dehydrogenase-coding genes were systematically co-regulated with at least one AA9 lytic polysaccharide monooxygenase gene, indicative of enzymatic synergy in vivo. This study highlights a conserved core white-rot fungal enzymatic mechanism behind the wood-decaying process.

Published
2020

13. Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

Author

Krizsán, Krisztina, Almási, Éva, Merényi, Zsolt, Sahu, Neha, Virágh, Máté, Kószó, Tamás, Mondo, Stephen, Kiss, Brigitta, Bálint, Balázs, Kües, Ursula, Barry, Kerrie, Cseklye, Judit, Hegedüs, Botond, Henrissat, Bernard, Johnson, Jenifer, Lipzen, Anna, Ohm, Robin A, Nagy, István, Pangilinan, Jasmyn, Yan, Juying, Xiong, Yi, Grigoriev, Igor V, Hibbett, David S, and Nagy, László G

Subjects
Biological Sciences, Genetics, Underpinning research, 1.1 Normal biological development and functioning, Generic health relevance, Agaricales, Databases, Nucleic Acid, Fruiting Bodies, Fungal, Fungal Proteins, Gene Expression Regulation, Fungal, Genes, Fungal, Transcriptome, complex multicellularity, evolution, fungi, comparative genomics, fruiting body development
Abstract

The evolution of complex multicellularity has been one of the major transitions in the history of life. In contrast to simple multicellular aggregates of cells, it has evolved only in a handful of lineages, including animals, embryophytes, red and brown algae, and fungi. Despite being a key step toward the evolution of complex organisms, the evolutionary origins and the genetic underpinnings of complex multicellularity are incompletely known. The development of fungal fruiting bodies from a hyphal thallus represents a transition from simple to complex multicellularity that is inducible under laboratory conditions. We constructed a reference atlas of mushroom formation based on developmental transcriptome data of six species and comparisons of >200 whole genomes, to elucidate the core genetic program of complex multicellularity and fruiting body development in mushroom-forming fungi (Agaricomycetes). Nearly 300 conserved gene families and >70 functional groups contained developmentally regulated genes from five to six species, covering functions related to fungal cell wall remodeling, targeted protein degradation, signal transduction, adhesion, and small secreted proteins (including effector-like orphan genes). Several of these families, including F-box proteins, expansin-like proteins, protein kinases, and transcription factors, showed expansions in Agaricomycetes, many of which convergently expanded in multicellular plants and/or animals too, reflecting convergent solutions to genetic hurdles imposed by complex multicellularity among independently evolved lineages. This study provides an entry point to studying mushroom development and complex multicellularity in one of the largest clades of complex eukaryotic organisms.

Published
2019

15. Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

Author

Hori, Chiaki, Ishida, Takuya, Igarashi, Kiyohiko, Samejima, Masahiro, Suzuki, Hitoshi, Master, Emma, Ferreira, Patricia, Ruiz-Dueñas, Francisco J., Held, Benjamin, Canessa, Paulo, Larrondo, Luis F., Schmoll, Monika, Druzhinina, Irina S., Kubicek, Christian P., Gaskell, Jill A., Kersten, Phil, St. John, Franz, Glasner, Jeremy, Sabat, Grzegorz, Splinter BonDurant, Sandra, Syed, Khajamohiddin, Yadav, Jagjit, Mgbeahuruike, Anthony C., Kovalchuk, Andriy, Asiegbu, Fred O., Lackner, Gerald, Hoffmeister, Dirk, Rencoret, Jorge, Gutiérrez, Ana, Sun, Hui, Lindquist, Erika, Barry, Kerrie, Riley, Robert, Grigoriev, Igor V., Henrissat, Bernard, Kües, Ursula, Berka, Randy M., Martínez, Angel T., Covert, Sarah F., Blanchette, Robert A., and Cullen, Daniel

Published
2014

20. The plant cell wall decomposing machinery underlies the functional diversity of forest fungi

Author

Eastwood, Daniel C., Floudas, Dimitrios, Binder, Manfred, Majcherczyk, Andrzej, Schneider, Patrick, Aerts, Andrea, Asiegbu, Fred O., Baker, Scott E., Barry, Kerrie, Bendiksby, Mika, Blumentritt, Melanie, Coutinho, Pedro M., Cullen, Dan, Vries, Ronald P. de, Gathman, Allen, Goodell, Barry, Henrissat, Bernard, Ihrmark, Katarina, Kauserud, Hävard, Kohler, Annegret, LaButti, Kurt, Lapidus, Alla, Lavin, José L., Lee, Yong-Hwan, Lindquist, Erika, Lilly, Walt, Lucas, Susan, Morin, Emmanuelle, Murat, Claude, Oguiza, José A., Park, Jongsun, Pisabarro, Antonio G., Riley, Robert, Rosling, Anna, Salamov, Asaf, Schmidt, Olaf, Schmutz, Jeremy, Skrede, Inger, Stenlid, Jan, Wiebenga, Ad, Xie, Xinfeng, Kües, Ursula, Hibbett, David S., Hoffmeister, Dirk, Högberg, Nils, Martin, Francis, Grigoriev, Igor V., and Watkinson, Sarah C.

Subjects
brown rot decay, saprotrophy, hemicellulose, dry rot fungus, s.lacrymans, Transcriptome, lignin
Abstract

Brown rot decay removes cellulose and hemicellulose from wood?residual lignin contributing up to 30percent of forest soil carbon?and is derived from an ancestral white rot saprotrophy in which both lignin and cellulose are decomposed. Comparative and functional genomics of the ?dry rot? fungus Serpula lacrymans, derived from forest ancestors, demonstrated that the evolution of both ectomycorrhizal biotrophy and brown rot saprotrophy were accompanied by reductions and losses in specific protein families, suggesting adaptation to an intercellular interaction with plant tissue. Transcriptome and proteome analysis also identified differences in wood decomposition in S. lacrymans relative to the brown rot Postia placenta. Furthermore, fungal nutritional mode diversification suggests that the boreal forest biome originated via genetic coevolution of above- and below-ground biota

Published
2011

31. Running Title: Cross-species multi-omics and conserved gene regulations

Author

Miyauchi, Shingo, Hage, Hayat, Drula, Elodie, Lesage-Meessen, Laurence, Berrin, Jean-Guy, Navarro, David, Favel, Anne, Chaduli, Delphine, Grisel, Sacha, Haon, Mireille, Piumi, François, Levasseur, Anthony, Lomascolo, Anne, Ahrendt, Steven, Barry, Kerrie, LaButti, Kurt M, Chevret, Didier, Daum, Chris, Mariette, Jérôme, Klopp, Christophe, Cullen, Daniel, de Vries, Ronald P, Gathman, Allen C, Hainaut, Matthieu, Henrissat, Bernard, Hildén, Kristiina S, Kües, Ursula, Lilly, Walt, Lipzen, Anna, Mäkelä, Miia R, Martinez, Angel T, Morel-Rouhier, Mélanie, Morin, Emmanuelle, Pangilinan, Jasmyn, Ram, Arthur F J, Wösten, Han A B, Ruiz-Dueñas, Francisco J, Riley, Robert, Record, Eric, Grigoriev, Igor V, Rosso, Marie-Noëlle, Molecular Microbiology, Sub Molecular Plant Physiology, Sub Molecular Microbiology, Molecular Plant Physiology, Department of Microbiology, Department of Food and Nutrition, Fungal Genetics and Biotechnology, Helsinki Institute of Sustainability Science (HELSUS), Westerdijk Fungal Biodiversity Institute - Fungal Physiology, Westerdijk Fungal Biodiversity Institute, Biodiversité et Biotechnologie Fongiques (BBF), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Interactions Arbres-Microorganismes (IAM), Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Imagine - Institut des maladies génétiques (IHU) (Imagine - U1163), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), Microbes évolution phylogénie et infections (MEPHI), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Institut Hospitalier Universitaire Méditerranée Infection (IHU Marseille), U.S. Department of Energy [Washington] (DOE), MICrobiologie de l'ALImentation au Service de la Santé (MICALIS), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRAE), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), USDA Forest Service Rocky Mountain Forest and Range Experiment Station, United States Department of Agriculture (USDA), Westerdijk Fungal Biodiversity Institute [Utrecht] (WI), Royal Netherlands Academy of Arts and Sciences (KNAW), Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Missouri Southern State University (MSSU), Architecture et fonction des macromolécules biologiques (AFMB), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Department of Molecular Cell Biology [Göttingen], Max Planck Institute for Biophysical Chemistry (MPI-BPC), Max-Planck-Gesellschaft-Max-Planck-Gesellschaft, Department of Energy / Joint Genome Institute (DOE), Los Alamos National Laboratory (LANL), Centro de Investigaciones Biológicas (CSIC), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), DOE Joint Genome Institute [Walnut Creek], Department of Molecular Microbiology and Biotechnology, Tel Aviv University (TAU), Utrecht University [Utrecht], Department of Plant Pathology & Microbiology [Riverside], University of California [Riverside] (UC Riverside), University of California (UC)-University of California (UC), Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231Ministerio de Ciencias, Innovación y Universidades de España (BIO2017-86559-R), ANR-14-CE06-0020,FUNTUNE,Cocktails enzymatiques inspirés de modèles fongiques pour la déconstruction contrôlée de la biomasse végétale(2014), Molecular Microbiology, Sub Molecular Plant Physiology, Sub Molecular Microbiology, Molecular Plant Physiology, Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Paris (UP), Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT INRA), Westerdijk Fungal Biodiversity Insitute [Utrecht] (WI), University of Helsinki, Tel Aviv University [Tel Aviv], University of California [Riverside] (UCR), University of California-University of California, COMBE, Isabelle, Appel à projets générique - Cocktails enzymatiques inspirés de modèles fongiques pour la déconstruction contrôlée de la biomasse végétale - - FUNTUNE2014 - ANR-14-CE06-0020 - Appel à projets générique - VALID, Agence Nationale de la Recherche (France), Department of Energy (US), Ministerio de Ciencia, Innovación y Universidades (España), Miyauchi, Shingo [0000-0002-0620-5547], Hage, Hayat [0000-0003-4118-1816], Drula, Elodie [0000-0002-9168-5214], Lesage-Meessen, Laurence [0000-0003-2275-2978], Berrin, Jean-Guy [0000-0001-7570-3745], Navarro, David [0000-0002-3266-8270], Favel, Anne [0000-0003-2255-3637], Haon, Mireille [0000-0002-5669-5177], Levasseur, Anthony [0000-0003-2989-7539], Lomascolo, Anne [0000-0003-3829-8503], Ahrendt, Steven [0000-0002-3029-2126], LaButti, Kurt M. [0000-0002-5838-1972], Chevret, Didier [0000-0001-9531-7657], Daum, Chris [0000-0003-3895-5892], Klopp, Christophe [0000-0001-7126-5477], Vries, Ronald P. de [0000-0002-4363-1123], Hainaut, Matthieu [0000-0002-7567-657X], Henrissat, Bernard [0000-0002-3434-8588], Hildén, Kristiina S. [0000-0002-0126-8186], Kües, Ursula [0000-0001-9180-4079], Lipzen, Anna [0000-0003-2293-9329], Mäkelä, Miia [0000-0003-0771-2329], Martínez, Ángel T. [0000-0002-1584-2863], Morel-Rouhier, Mélanie [0000-0001-5149-0474], Morin, Emmanuelle [0000-0002-7268-972X], Ram, Arthur [0000-0002-2487-8016], Wösten, Han [0000-0002-0399-3648], Ruiz-Dueñas, F. J. [0000-0002-9837-5665], Record, Éric [0000-0002-7545-9997], Grigoriev, Igor V. [0000-0002-3136-8903], Rosso, Marie-Noëlle [0000-0001-8317-7220], Miyauchi, Shingo, Hage, Hayat, Drula, Elodie, Lesage-Meessen, Laurence, Berrin, Jean-Guy, Navarro, David, Favel, Anne, Haon, Mireille, Levasseur, Anthony, Lomascolo, Anne, Ahrendt, Steven, LaButti, Kurt M., Chevret, Didier, Daum, Chris, Klopp, Christophe, Vries, Ronald P. de, Hainaut, Matthieu, Henrissat, Bernard, Hildén, Kristiina S., Kües, Ursula, Lipzen, Anna, Mäkelä, Miia, Martínez, Ángel T., Morel-Rouhier, Mélanie, Morin, Emmanuelle, Ram, Arthur, Wösten, Han, Ruiz-Dueñas, F. J., Record, Éric, Grigoriev, Igor V., and Rosso, Marie-Noëlle

Subjects
AcademicSubjects/SCI01140, SELECTION, Cellobiose, Lignin, ANNOTATION, chemistry.chemical_compound, lignocellulose, [SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases, Phylogeny, [SDV.MP.VIR] Life Sciences [q-bio]/Microbiology and Parasitology/Virology, [SDV.MHEP.ME] Life Sciences [q-bio]/Human health and pathology/Emerging diseases, 11832 Microbiology and virology, 0303 health sciences, [SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases, Genome, Full Paper, Basidiomycota, General Medicine, PHANEROCHAETE-CHRYSOSPORIUM, Wood, Pycnoporus, [SDV.MHEP.CSC] Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system, GENOME, Fungal, Biochemistry, CAZyme, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, [SDV.MHEP.MI] Life Sciences [q-bio]/Human health and pathology/Infectious diseases, lytic polysaccharide monooxygenase, Genome, Fungal, ENZYMES, CAZymes, [SDV.MP.PAR] Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology, Biotechnology, DATABASE, 1.1 Normal biological development and functioning, Plant Biology & Botany, AcademicSubjects/MED00774, Biology, CLASSIFICATION, Fungal Proteins, CERIPORIOPSIS-SUBVERMISPORA, 03 medical and health sciences, [SDV.MHEP.CSC]Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system, Underpinning research, Oxidative enzyme, Genetics, [SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology, Cellulose, Molecular Biology, Gene, 030304 developmental biology, Lytic Polysaccharide Monooxygenase (LPMO), Comparative genomics, Lytic Polysaccharide Monooxygenase, 030306 microbiology, 15. Life on land, DEGRADATION, biology.organism_classification, [SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology, chemistry, Class II Peroxidase, wood decay, Carbohydrate Dehydrogenases, SECRETOME, [SDV.MP.BAC] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
Abstract

14 p.-8 fig.-1 tab., White-rot (WR) fungi are pivotal decomposers of dead organic matter in forest ecosystems and typically use a large array of hydrolytic and oxidative enzymes to deconstruct lignocellulose. However, the extent of lignin and cellulose degradation may vary between species and wood type. Here we combined comparative genomics,transcriptomics and secretome proteomics to identify conserved enzymatic signatures at the onset of wood decaying activity within the Basidiomycota genus Pycnoporus. We observed strong conservation in the genome structures and the repertoires of protein coding genes across the four Pycnoporus species described to date,despite the species having distinct geographic distributions. We further analyzed the early response of P. cinnabarinus, P. coccineus and P. sanguineus to diverse (ligno)-cellulosic substrates. We identified a conserved set of enzymes mobilized by the three species for breaking down cellulose, hemicellulose and pectin.The co-occurrence in the exo-proteomes of H2O2 producing enzymes with H2O2 consuming enzymes was a common feature of the three species, although each enzymatic partner displayed independent transcriptional regulation. Finally, cellobiose dehydrogenase-coding genes were systematically co-regulated with at least one AA9 LPMO gene, indicative of enzymatic synergy in vivo. This study highlights a conserved core white-rot fungal enzymatic mechanism behind the wood decaying process., This work was supported by The French National Agency for Research (ANR-14-CE06-0020). The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The work by CSIC was supported by the Ministerio de Ciencias, Innovación y Universidades de España (BIO2017-86559-R).

Published
2020

32. Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

Author

Morin, Emmanuelle, Kohler, Annegret, Baker, Adam R., Foulongne-Oriol, Marie, Lombard, Vincent, Nagy, Laszlo G., Ohm, Robin A., Patyshakuliyeva, Aleksandrina, Brun, Annick, Aerts, Andrea L., Bailey, Andrew M., Billette, Christophe, Coutinho, Pedro M., Deakin, Greg, Doddapaneni, Harshavardhan, Floudas, Dimitrios, Grimwood, Jane, Hildén, Kristiina, Kües, Ursula, LaButti, Kurt M., Lapidus, Alla, Lindquist, Erika A., Lucas, Susan M., Murat, Claude, Riley, Robert W., Salamov, Asaf A., Schmutz, Jeremy, Subramanian, Venkataramanan, Wösten, Han A. B., Xu, Jianping, Eastwood, Daniel C., Foster, Gary D., Sonnenberg, Anton S. M., Cullen, Dan, de Vries, Ronald P., Lundell, Taina, Hibbett, David S., Henrissat, Bernard, Burton, Kerry S., Kerrigan, Richard W., Challen, Michael P., Grigoriev, Igor V., and Martin, Francis

Published
2012

34. The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Author

Flundas, Dimitrios, Binder, Manfred, Riley, Robert, Barry, Kerrie, Blanchette, Robert A., Henrissat, Bernard, Martínez, Angel T., Otillar, Robert, Spatafora, Joseph W., Yadav, Jagjit S., Aerts, Andrea, Benoit, Isabelle, Boyd, Alex, Carlson, Alexis, Copeland, Alex, Coutinho, Pedro M., de Vries, Ronald P., Ferreira, Patricia, Findley, Keisha, Foster, Brian, Gaskell, Jill, Glotzer, Dylan, Górecki, Paweł, Heitman, Joseph, Hesse, Cedar, Hori, Chiaki, Igarashi, Kiyohiko, Jurgens, Joel A., Kallen, Nathan, Kersten, Phil, Kohler, Annegret, Kües, Ursula, Kumar, T. K. Arun, Kuo, Alan, LaButti, Kurt, Larrondo, Luis F., Lindquist, Erika, Ling, Albee, Lombard, Vincent, Lucas, Susan, Lundell, Taina, Martin, Rachael, McLaughlin, David J., Morgenstern, Ingo, Morin, Emanuelle, Murat, Claude, Nagy, Laszlo G., Nolan, Matt, Ohm, Robin A., Patyshakuliyeva, Aleksandrina, Rokas, Antonis, Ruiz-Dueñas, Francisco J., Sabat, Grzegorz, Salamov, Asaf, Samejima, Masahiro, Schmutz, Jeremy, Slot, Jason C., St. John, Franz, Stenlid, Jan, Sun, Hui, Sun, Sheng, Syed, Khajamohiddin, Tsang, Adrian, Wiebenga, Ad, Young, Darcy, Pisabarro, Antonio, Eastwood, Daniel C., Martin, Francis, Cullen, Dan, Grigoriev, Igor V., and Hibbett, David S.

Published
2012
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35. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

Author

Fernandez-Fueyo, Elena, Ruiz-Dueñas, Francisco J., Ferreira, Patricia, Floudas, Dimitrios, Hibbett, David S., Canessa, Paulo, Larrondo, Luis F., James, Tim Y., Seelenfreund, Daniela, Lobos, Sergio, Polanco, Rubén, Tello, Mario, Honda, Yoichi, Watanabe, Takahito, Watanabe, Takashi, San, Ryu Jae, Kubicek, Christian P., Schmoll, Monika, Gaskell, Jill, Hammel, Kenneth E., St. John, Franz J., Wymelenberg, Amber Vanden, Sabat, Grzegorz, BonDurant, Sandra Splinter, Syed, Khajamohiddin, Yadav, Jagjit S., Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Lavín, José L., Oguiza, José A., Perez, Gumer, Pisabarro, Antonio G., Ramirez, Lucia, Santoyo, Francisco, Master, Emma, Coutinho, Pedro M., Henrissat, Bernard, Lombard, Vincent, Magnuson, Jon Karl, Kües, Ursula, Hori, Chiaki, Igarashi, Kiyohiko, Samejima, Masahiro, Held, Benjamin W., Barry, Kerrie W., LaButti, Kurt M., Lapidus, Alla, Lindquist, Erika A., Lucas, Susan M., Riley, Robert, Salamov, Asaf A., Hoffmeister, Dirk, Schwenk, Daniel, Hadar, Yitzhak, Yarden, Oded, de Vries, Ronald P., Wiebenga, Ad, Stenlid, Jan, Eastwood, Daniel, Grigoriev, Igor V., Berka, Randy M., Blanchette, Robert A., Kersten, Phil, Martinez, Angel T., Vicuna, Rafael, and Cullen, Dan

Published
2012

38. Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Author

Duplessis, Sébastien, Cuomo, Christina A., Lin, Yao-Cheng, Aerts, Andrea, Tisserant, Emilie, Veneault-Fourrey, Claire, Joly, David L., Hacquard, Stéphane, Amselem, Joëlle, Cantarel, Brandi L., Chiu, Readman, Coutinho, Pedro M., Feau, Nicolas, Field, Matthew, Frey, Pascal, Gelhaye, Eric, Goldberg, Jonathan, Grabherr, Manfred G., Kodira, Chinnappa D., Kohler, Annegret, Kües, Ursula, Lindquist, Erika A., Lucas, Susan M., Mago, Rohit, Mauceli, Evan, Morin, Emmanuelle, Murat, Claude, Pangilinan, Jasmyn L., Park, Robert, Pearson, Matthew, Quesneville, Hadi, Rouhier, Nicolas, Sakthikumar, Sharadha, Salamov, Asaf A., Schmutz, Jeremy, Selles, Benjamin, Shapiro, Harris, Tanguay, Philippe, Tuskan, Gerald A., Henrissat, Bernard, Van de Peer, Yves, Rouzé, Pierre, Ellis, Jeffrey G., Dodds, Peter N., Schein, Jacqueline E., Zhong, Shaobin, Hamelin, Richard C., Grigoriev, Igor V., Szabo, Les J., and Martin, Francis

Published
2011

39. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

Author

Stajich, Jason E., Wilke, Sarah K., Ahrén, Dag, Au, Chun Hang, Birren, Bruce W., Borodovsky, Mark, Burns, Claire, Canbäck, Björn, Casselton, Lorna A., Cheng, C.K., Deng, Jixin, Dietrich, Fred S., Fargo, David C., Farman, Mark L., Gathman, Allen C., Goldberg, Jonathan, Guigó, Roderic, Hoegger, Patrick J., Hooker, James B., Huggins, Ashleigh, James, Timothy Y., Kamada, Takashi, Kilaru, Sreedhar, Kodira, Chinnapa, Kües, Ursula, Kupfer, Doris, Kwan, H.S., Lomsadze, Alexandre, Li, Weixi, Lilly, Walt W., Ma, Li-Jun, Mackey, Aaron J., Manning, Gerard, Martin, Francis, Muraguchi, Hajime, Natvig, Donald O., Palmerini, Heather, Ramesh, Marilee A., Rehmeyer, Cathy J., Roe, Bruce A., Shenoy, Narmada, Stanke, Mario, Ter-Hovhannisyan, Vardges, Tunlid, Anders, Velagapudi, Rajesh, Vision, Todd J., Zeng, Qiandong, Zolan, Miriam E., Pukkila, Patricia J., and Bennett, Joan Wennstrom

Published
2010

41. Genome, Transcriptome, and Secretome Analysis of Wood Decay Fungus Postia placenta Supports Unique Mechanisms of Lignocellulose Conversion

Author

Martinez, Diego, Challacombe, Jean, Morgenstern, Ingo, Hibbett, David, Schmoll, Monika, Kubicek, Christian P., Ferreira, Patricia, Ruiz-Duenas, Francisco J., Martinez, Angel T., Kersten, Phil, Hammel, Kenneth E., Vanden Wymelenberg, Amber, Gaskell, Jill, Lindquist, Erika, Sabat, Grzegorz, BonDurant, Sandra Splinter, Larrondo, Luis F., Canessa, Paulo, Vicuna, Rafael, Yadav, Jagjit, Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Pisabarro, Antonio G., Lavin, José L., Oguiza, José A., Master, Emma, Henrissat, Bernard, Coutinho, Pedro M., Harris, Paul, Magnuson, Jon Karl, Baker, Scott E., Bruno, Kenneth, Kenealy, William, Hoegger, Patrik J., Kües, Ursula, Ramaiya, Preethi, Lucas, Susan, Salamov, Asaf, Shapiro, Harris, Tu, Hank, Chee, Christine L., Misra, Monica, Xie, Gary, Teter, Sarah, Yaver, Debbie, James, Tim, Mokrejs, Martin, Pospisek, Martin, Grigoriev, Igor V., Brettin, Thomas, Rokhsar, Dan, Berka, Randy, Cullen, Dan, and Dixon, Richard A.

Published
2009
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