1. Identification of acquired copy number alterations and uniparental disomies in cytogenetically normal acute myeloid leukemia using high-resolution single-nucleotide polymorphism analysis
- Author
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Hartmut Döhner, C Senger, Ina Radtke, Ursula Botzenhardt, C Schön, Karlheinz Holzmann, Verena I. Gaidzik, Jan Krönke, Richard F. Schlenk, James R. Downing, Lars Bullinger, K Döhner, A Carió, and K Urlbauer
- Subjects
Adult ,Male ,congenital, hereditary, and neonatal diseases and abnormalities ,Cancer Research ,medicine.medical_specialty ,NPM1 ,Adolescent ,Gene Dosage ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,Young Adult ,Enhancer binding ,CEBPA ,medicine ,Humans ,In Situ Hybridization, Fluorescence ,Genetics ,Chromosomes, Human, Pair 12 ,Gene Expression Regulation, Leukemic ,Chromosomes, Human, Pair 11 ,Cytogenetics ,Myeloid leukemia ,Nuclear Proteins ,Hematology ,Middle Aged ,Uniparental Disomy ,medicine.disease ,Uniparental disomy ,Leukemia, Myeloid, Acute ,Oncology ,Karyotyping ,CCAAT-Enhancer-Binding Proteins ,Chromosomes, Human, Pair 6 ,Female ,Nucleophosmin ,SNP array - Abstract
Recent advances in genome-wide single-nucleotide polymorphism (SNP) analyses have revealed previously unrecognized microdeletions and uniparental disomy (UPD) in a broad spectrum of human cancers. As acute myeloid leukemia (AML) represents a genetically heterogeneous disease, this technology might prove helpful, especially for cytogenetically normal AML (CN-AML) cases. Thus, we performed high-resolution SNP analyses in 157 adult cases of CN-AML. Regions of acquired UPDs were identified in 12% of cases and in the most frequently affected chromosomes, 6p, 11p and 13q. Notably, acquired UPD was invariably associated with mutations in nucleophosmin 1 (NPM1) or CCAAT/enhancer binding protein-alpha (CEBPA) that impair hematopoietic differentiation (P=0.008), suggesting that UPDs may preferentially target genes that are essential for proliferation and survival of hematopoietic progenitors. Acquired copy number alterations (CNAs) were detected in 49% of cases with losses found in two or more cases affecting, for example, chromosome bands 3p13-p14.1 and 12p13. Furthermore, we identified two cases with a cryptic t(6;11) as well as several non-recurrent aberrations pointing to leukemia-relevant regions. With regard to clinical outcome, there seemed to be an association between UPD 11p and UPD 13q cases with overall survival. These data show the potential of high-resolution SNP analysis for identifying genomic regions of potential pathogenic and clinical relevance in AML.
- Published
- 2009