21 results on '"KAŞİFOĞLU, NİLGÜN"'
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2. Anti-Sitoplazmik ve Anti-Mitotik Otoantikorlar; Bu Antikorların Hastalıklarla İlişkisi Var Mı?
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KAŞİFOĞLU, Nilgün, YAŞAR BİLGE, Nazife Şule, and KAŞİFOĞLU, Timuçin
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Health Care Sciences and Services ,Anti-nuclear antibody ,anti-cytoplasmic pattern ,anti-mitotic pattern ,autoantibody ,indirect immunofluorescence assay ,Sağlık Bilimleri ve Hizmetleri ,Anti-nükleer antikor ,anti-sitoplazmik patern ,anti-mitotik patern ,otoantikor ,indirekt immünfloresan test - Abstract
Examination of antinuclear antibody (ANA) is used in diagnosis of systemic autoimmune diseases, and the indirect immunofluorescence (IIF) assay using HEp-2 cells is the gold standard method. HEp-2 allows the detection of multiple target antigen-directed autoantibodies. The guide “The International Consensus on ANA Patterns (ICAP)”, characterizes the patterns into three groups: nuclear, cytoplasmic, and mitotic. The majority of these are associated with autoimmune diseases, but some are rarely seen in autoimmune diseases or may be associated with conditions other than autoimmune disease. There is no consensus on how to report cytoplasmic and mitotic patterns-negative or positive. We aimed to examine the characteristics of patients that had cytoplasmic or mitotic staining in ANA evaluation by IIF. In our Medical Microbiology Laboratory, 18985 ANA tests of 16940 patients were studied between 01.01.2015-31.12.2019. Cytoplasmic or mitotic pattern was detected in 393 (2.07%) tests belonging to 385 patients. Cytoplasmic patterns suggestive of anti-mitochondrial antibody (AMA), anti-smooth muscle antibody (ASMA), anti-Jo-1 and anti-ribosomal P-protein were not included. The most common patterns were anti-midbody, anti-spindle fibers, and anti-vimentin patterns. There were 66 rheumatology patients that were negative for ANA but had cytoplasmic or mitotic staining. There was no statistically significant difference between the diagnosis and patterns of these patients. We suggest that the ANA should be reported as “negative” in case of cytoplasmic or mitotic pattern unless the term anti-cell antibody is used. It should be noted in the description part of the report in order to distinguish significant cytoplasmic patterns and give an idea for some specific conditions., Sistemik otoimmün hastalıkların tanısında antinükleer antikor (ANA) incelemesi yapılır ve HEp-2 hücrelerini kullanan indirekt immünfloresan (IIF) test altın standart yöntemdir. HEp-2, çok sayıda hedef antijene yönelmiş otoantikorların saptanmasına imkân verir. “Antinükleer Antikor (ANA) Paterninde Uluslararası Uzlaşı” rehberi, paternleri üç gruba ayırır: nükleer, sitoplazmik ve mitotik. Bunların çoğu otoimmün hastalıklarla ilişkilidir, ancak bazıları otoimmün hastalıklarda nadiren görülür veya otoimmün hastalık dışındaki durumlarla ilişkili olabilir. Sitoplazmik ve mitotik paternlerin nasıl raporlanacağı konusunda- negatif veya pozitif- bir fikir birliği yoktur. IIF ile ANA değerlendirmesinde sitoplazmik veya mitotik boyanma olan hastaların özelliklerini incelemeyi amaçladık. Tıbbi Mikrobiyoloji Laboratuvarımızda 01.01.2015-31.12.2019 tarihleri arasında 16940 hastaya ait 18985 ANA testi çalışılmıştır. 385 hastaya ait 393 (%2.07) testte sitoplazmik veya mitotik patern tespit edildi. Anti-mitokondriyal antikor (AMA), anti-düz kas antikoru (ASMA), anti-Jo-1 ve anti-ribozomal P-proteini düşündüren sitoplazmik paternler çalışmaya dahil edilmedi. En sık görülen paternler anti-midbody (hücreler arası köprü), anti-spindle fibers (iğsi iplikçikler) ve anti-vimentin paternleriydi. Altmış altı romatoloji hastasında ANA negatifti ancak sitoplazmik veya mitotik boyanma saptandı. Bu hastaların tanı ve paternleri arasında istatistiksel olarak anlamlı bir fark bulunamadı. Anti-hücre antikoru terimi kullanılmadıkça, sitoplazmik veya mitotik patern olması durumunda ANA'nın “negatif” olarak rapor edilmesini öneriyoruz. Bu boyanma, önemli sitoplazmik paternleri ayırt etmek ve bazı spesifik durumlar hakkında fikir vermek için raporun açıklama kısmında belirtilmelidir
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- 2022
3. KRON KIRIĞI VAKASI VE KOMPLİKASYONLARI
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ÖZDEMİR, Canan, primary, KOŞAR, Yasin, additional, DEMİRKOL, Dilara, additional, KAŞİFOĞLU, Nilgün, additional, and ÇALIŞKAN, Seçil, additional
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- 2020
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4. Sistemik skleroz hastalarında genişletilmiş otoantikor profili ve klinik özelliklerle ilişkisi: Dört yıllık takip verileri.
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Karadağ, Duygu Temiz, Komaç, Andaç, Erez, Yeşim, Birlik, Ahmet Merih, Sarı, Alper, Farisoğulları, Bayram, Akdoğan, Ali, Kimyon, Gezmiş, Koç, Emrah, Arslan, Didem, Karataş, Ahmet, Koca, Süleyman Serdar, Kaşifoğlu, Nilgün, Yazıcı, Ayten, Hayran, Mutlu, and Çefle, Ayşe
- Abstract
Amaç: Sistemik sklerozda (SSk) oto-antikorlar hastalığın tanısında, alt tiplerinin ve prognozun belirlenmesinde ve organ tutulumlarının öngörülmesinde kullanılmaktadır. SSk hastalarında hastalığa spesifik oto-antikorlar (anti-sentromer antikor, anti-Scl-70 antikor ve anti-RNA polimeraz II antikor) yanında spesifik olmayan oto-antikorlar da saptanmaktadır. Çalışmamızın, erken SSk hastalarında genişletilmiş bir profilde oto-antikorların sıklığını, erken dönem ve takipte gelişen organ tutulumları ile ilişkisini araştırmaktır. Yöntem: Çalışmaya ACR/EULAR 2013 sınıflama kriterlerini karşılayan ve hastalık süresi <3 yıl olan erken SSk hastaları alındı. Hastaların ANA ölçümleri HEp-20-10/primat karaciğer mozaiği indirekt immünofloresan (IIF) ve geniş panel oto-antikor ölçümü için SSc (Nucleoli) Profile EuroLine (Euroimmun, Lübeck, Almanya) kitleri kullanıldı. Bulgular: Yüz hastadan 93'ü IIF ile ANA için pozitifti. Anti-Scl70 ab en sık saptanan (%41) oto-antikor olurken, bunu %27 ile anti-sentromer ab (ACA) ve %15 sıklıkla RNAPIII izledi. Otuz iki hastada çoklu otoantikor pozitifliği ve 53 hastada tek pozitiflik (26'sı anti-Scl70, 16'sı ACA, 6'sı anti-RNAPIII, 1 anti-Ku ab, 1 anti-PM/Scl100, 2 anti-PM/Scl75 ve 1 anti-Ro52) saptandı. SSk'ye özgü otoantikorlar arasında, anti-Scl70 ve anti-RNAPIII antikorları en yüksek birliktelik gösterdi ve 4 hastada pozitifti. SSk'ye özgü otoantikorlar için tek veya çoklu boyaması olan hastalar arasında majör organ tutulumları açısından fark yoktu (tümü için p>0,05). Hastaların 4 yıllık takibi sonucunda 80 hastanın verilerine ulaşıldı. Hastaların 3'ünün takipten çıktığı ve birinin öldüğü saptandı. Daha önce organ tutulumu saptanmayan hastaların takip sırasında 5'inde İAH, 1'inde PAH ve 3'ünde dijital ülserin yeni geliştiği bulundu. İAH gelişen yaygın deri tutulumlu hastalarda Scl-70 saptanırken, İAH gelişen sınırlı deri tutulumlu hastalarda CENPA/B, Ro52 ve anti-ku antikorlarının ikili pozitiflikleri saptandı. Sonuç: Çalışmamızın sonuçlarına göre SSk'da spesifik otoantikorlar nispeten sık olmasına rağmen, hastaların çoğunluğunda çoklu otoantikor pozitiflikleri görülmüştür. Çoklu oto-antikor pozitiflikleri SSk-spesifik oto-antikorların beklenen organ tutulumlarında farklılığa farklılığa yol açabilir. [ABSTRACT FROM AUTHOR]
- Published
- 2022
5. El yıkama alışkanlıklarının eldeki aerob mikroorganizma yükü ile ilişkisi.
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ÖZ, Yasemin, KAŞİFOĞLU, Nilgün, ÖZTÜRK, Tuğçe Nur, KARADENİZ, Betül, ÖZDEMİR, Ahmet İshak, PALAZOĞLU, Berk, KARAL, Fatma Betül, and SHERİFF, Mohammed V.
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HAND care & hygiene , *MEDICAL students , *HAND washing , *GRAM-negative bacteria , *MEDICAL personnel , *MOLDS (Fungi) - Abstract
Objective: Hand washing is not only the simplest universal method to prevent healthcare related infections, it is also very important for the protection and development of general public health. In this study, it was aimed to investigate the hand washing habits and load of microorganisms in the hands of healthcare professionals and non-healthcare participants, so to raise the awareness in terms of hand hygiene. Methods: The study group consisted of patients and their relatives over 18 years of age, medical staff and medical school students. A questionnaire consisting of 17 questions regarding their personal characteristics and hand washing habits were applied to all participants. Swab samples were taken by sterile swabs from 1 cm2 areas of four different regions of the hands that were predominantly used by the participants, and were inoculated on blood agar plates and evaluated after 48 hours of incubation. Results: A total of 194 participants were reached, including 77 patients and patient relatives, 85 medical staff and 32 medical school students. A hundred and thirty- five of the participants were women and 59 were men. Bacteria that are members of normal skin flora (coagulase negative staphylococci, viridans streptococci, coryneform bacteria, micrococci) were isolated from almost all samples and more than 100 CFU bacterial load was detected in 53 participants. In 59 (30.4%) participants, microorganisms not included in normal skin flora (Gram negative enteric bacteria, Bacillus spp., Pseudomonas spp., Enterococcus spp., Staphylococcus aureus, mold and yeast fungi) were isolated. The proportion of these was calculated as 23% in patient/patient relatives, 33% in medical staff and 41% in students (p> 0.05). Women had a significantly lower bacterial load than men, 40-49 age group had a significantly lower bacterial load than participants over 60, and intensive care unit staff had a significantly lower bacterial load than patient/patient relatives and medical staff other than intensive care unit. Some hand washing habits of the participants were evaluated by scoring; 2 points before eating, 1 after eating, 1 before restroom, 2 after restroom, 2 after money contact, 2 when entering home from outside. As the hand washing score increased, the bacterial load on the hands decreased, but it was not statistically significant. It was observed that factors such as smoking, long nails, liquid/solid soap, paper/fabric towel, having a pet did not affect the microorganism load on the hands. The presence of any wound/lesion, prolonged time after hand washing and use of moisturizer were found associated with increased load. Conclusion: Being aware of the importance of hand hygiene in the community and especially among healthcare professionals is extremely important for the correct application of hand washing practices. In this study, it was aimed to emphasize the importance of hand washing by demonstrating the microorganism load on hands with the hand washing habits in a group of hospital related participants. [ABSTRACT FROM AUTHOR]
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- 2021
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6. MEFV gen mutasyonunun 2. ya da 10. ekzonda olması ailevi Akdeniz ateşi hastalığının seyrinde etkili midir?
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ŞENEL, SONER, SARI, İSMAİL, KAŞİFOĞLU, NİLGÜN, KAŞİFOĞLU, TİMUÇİN, SAYARLIOĞLU, MEHMET, ERKEN, EREN, DİRESKENELİ, RAFİ HANER, KALYONCU, UMUT, AKSU, KENAN, AKAR, SERVET, ŞAHİN, FEZAN, GÖNÜLLÜ, EMEL, ERTEN, ŞÜKRAN, YILDIRIM ÇETİN, GÖZDE, BES, CEMAL, PEHLİVAN, YAVUZ, YAZISIZ, VELİ, YILMAZ, SEMA, tufan, müge aydın, bozkırlı, duygu ersözlü, YILMAZ, SEDAT, YILDIZ, FATİH, ÖNER, sibel yılmaz, KILIÇ, LEVENT, EMMUNGİL, HAKAN, SOLMAZ, DİLEK, and YAŞAR BİLGE, NAZİFE ŞULE
- Published
- 2017
7. Santral Sinir Sistemi Enfeksiyonlarında, Herpes Simplex Virüs Varlığının Beyin Omurilik Sıvısı Örneklerinde Real–Time PZR Yöntemiyle Araştırılması
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KAŞİFOĞLU, Nilgün, ASLAN, Müge, DURMAZ, Gül, and US, Tercan
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Beyin omurilik sıvısı,Herpes simpleks Virüs,Real time PZR,Santral Sinir Sistemi Enfeksiyonu ,Health Care Sciences and Services ,Sağlık Bilimleri ve Hizmetleri ,Cerebrospinal fluid,Herpes simplex virus,Real-time PZR - Abstract
Central nervous system (CNS) infectionsrequire a rapid diagnosis and treatment approach due to their potential ofrapid progression and the possibility of permanent neurological damage. Herpessimplex virus (HSV) is one of the most common causative agents of acutesporadic viral encephalitis. In diagnosis of CNS infections, the detection ofHSV DNA in cerebrospinal fluid by polymerase chain reaction (PCR) is the goldstandard method. In this study, HSV DNAreal-time PCR results of cerebrospinal fluid samples (CSF) sent to ourmicrobiology laboratory from patients with prediagnosis of viral CNS infectionbetween 2008-2015 were evaluated retrospectively. A total of 176 cerebrospinal fluid samplessent to Microbiology Laboratory of Eskisehir Osmangazi University MedicalFaculty between 2008-2015 were evaluated. After DNA isolation from thesesamples, HSV 1/2 DNA presence was evaluated with Real-time PCR technique byusing Artus HSV1/2 RG PCR (Qiagen, Germany) kits on Rotor-Gene system (CorbettResearch 6000, Australia). The analytical sensitivity of the kit for HSV-1 andHSV-2; 120 copies/ml and 160 copies/mL, respectively. Ninety three (52.8 %)patients were male and 83 (47.2 %) were female, ages ranging from 1 to 74(median age 36) years. HSV-1 DNA was detected by nucleic acid testing in 9 ofthe 176 patients (5.1%). Five of the 9 HSV-1 positive patients were females.Four of the positive patients were from Infection disease department, three ofthem from Neurology and two were from Anesthesia department. Even though CNSinfections are not rare, the incidence is not clearly established. The earlydiagnosis of HSV infections is extremely important in CNS infections due toHSV, as specific antiviral treatment dramatically reduces the mortality. Theetiology is unknown in many cases; the development of molecular techniques suchas real-time PCR has increased the detection rate of viral agents., Öz: Santral sinir sistemi(SSS) enfeksiyonları hızlı ilerleyen, ölüme veya kalıcı sekellere nedenolabilen hastalıklardandır. Bu nedenle hızlı tanı büyük önem taşımaktadır. Akutmenenjit ve ensefalit etyolojisinde ensık karşılaşılan etken virüslerdir. Bu etkenler arasında Herpes simpleks virüs(HSV) önemli bir yere sahiptir. MSS enfeksiyonu tanısında, HSV DNA’nın beyinomurilik sıvısı (BOS)’nda polimeraz zincir reaksiyonu (PZR) ile tespit edilmesialtın standart olarak kabul edilmektedir.Bu çalışmada 2008-2015 yıllarıarasında, MSS enfeksiyonu ön tanılı hastaların, ESOGÜ Tıp Fakültesi TıbbiMikrobiyoloji Anabilim Dalı Laboratuvarı’na gönderilen BOS örneklerinin Realtime PZR sonuçları retrospektif olarak değerlendirilmiştir. Bu BOS örneklerindeDNA izolasyonu yapıldıktan sonra Artus HSV1/2 RG PCR ( Qiagen, Almanya) kitlerikullanılarak Gerçek zamanlı polimerazzincir reaksiyonu ile Rotor Gene(Corbett Research 6000, Avustralya) cihazında HSV1/2 DNA varlığıaraştırılmıştır. Kullanılan kitin analitik duyarlılığı HSV-1 ve HSV-2 içinsırasıyla 120 ve 160 kopya/mL’dir. Toplam 176 BOS örneği değerlendirilmiş olup;bu örneklerin 93’ü (%52.8) erkek, 83’ü kadın (%47.2) hastalara aittir.Hastaların yaş aralığı 1-74 arasında değişmektedir. Gönderilen 176 BOSörneğinin 9’unda (%5.1) HSV-1 DNA pozitif saptanırken hiçbir BOS örneğindeHSV-2 DNA saptanmamıştır. HSV-1 DNA’sı pozitif saptanan hasta örneklerinden 4’üEnfeksiyon Hastalıkları, 3’ü Nöroloji, 2’si ise Anestezi ve Reanimasyonkliniklerinden gönderilmiştir. SSS enfeksiyonları nadir görülmekte ancakinsidansları tam olarak bilinmemektedir. HSV’ye bağlı SSS enfeksiyonlarında,etkili antiviral tedaviye başlama ve mortalitenin azaltılması açısından etkeneyönelik erken tanı çok önemlidir. Bu grup hastada gerçek zamanlı PZR gibimoleküler yöntemlerin uygulamaya girmesi, tedavinin belirlenmesi açısındanklinisyen hekimlere önemli oranda katkı sağlamaktadır.
- Published
- 2017
8. Koneman’xxs Color Atlas and Textbook of Diagnostic MicrobiologyKoneman Renkli Atlas ve Tanısal Mikrobiyoloji Kitabı Türkçe Baskısı
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AKÇALI, ALPER, ÇETİN BALIKÇI, MİNE, TELLİ, MURAT, BERKTAŞ, MUSTAFA, GÜNEY, MUSTAFA, ÜLGER, MAHMUT, ÇALGIN, MUSTAFA KEREM, CAN, KÜBRA, ERGÜNAY, KORAY, YALÇINKAYA, KEZBAN TÜLAY, GÖÇMEN, JULİDE SEDEF, AKYAR, IŞIN, MUMCUOĞLU, İPEK, SAĞLIK, İMRAN, TOSUN, İLKNUR, BASKIN, ABDURRAHMAN HÜSEYİN, GAZİ, HÖRÜ, ALIŞKAN, HİKMET EDA, HASÇELİK, AYŞE GÜLŞEN, TARHAN, GÜLNUR, ÖNGÜT, GÖZDE, ASLAN, GÖNÜL, ERKÖSE GENÇ, GONCA, KARAHAN, GİZEM, CÖMERT, FÜSUN, DOĞRUMAN AL, FUNDA, KOLAYLI, FETİYE, TUNÇKANAT, FATMA FERDA, YILDIZ ZEYREK, FADİLE, ÖZKAYA, ESRA, ÖZYURT, MUSTAFA, ASLAN, MÜGE, GÜRAN, MÜMTAZ, TORUN, MÜZEYYEN, NAGEHAN, PAKAŞTIÇALI, NEŞE, GÖL, KAKLIKKAYA, NEŞE, YURTTUTAN UYAR, NEVAL, ÖZEN, NEVGÜN SEPİN, ÇELİKBİLEK, NEVRESTE, GÜRLER, NEZAHAT, YILMAZ, NEZİHA, ÇÖPLÜ, NİLAY, KOÇOĞLU, MÜCAHİDE ESRA, RUH, EMRAH, UZUNOĞLU KARAGÖZ, EMEL, EVREN, EBRU, ŞATANA, DİLEK, ÖĞÜNÇ, MERAL DİLARA, KART, DİDEM, DÜNDAR, DEVRİM, KÜLAH, CANAN, ÖZER, BURÇİN, EKİNCİ, BORA, DOĞAN, BORA, ÖNGEN, BETİGÜL, SANCAK, BANU, KAŞKATEPE, BANU, FEYZİOĞLU, BAHADIR, KALKANCI, AYŞE, KARADENİZLİ, AYNUR, KARAKULLUKÇU, ASİYE, ERGİN, MUSTAFA ALPER, BAŞUSTAOĞLU, AHMET CELAL, IRMAK, BARAN, KALELİ, İLKNUR, KUTLU, HÜSEYİN HAYDAR, KAŞİFOĞLU, NİLGÜN, CEVAHİR, NURAL, KARACAN SEVER, NURDAN, ÜLGER, NURVER, KARATUNA, ONUR, BAYLAN, ORHAN, BEDİR, ORHAN, YILMAZ, ÖZLEM, ESER, ÖZGEN, YURDAKUL, PINAR, KEŞLİ, RECEP, TEZCAN ÜLGER, SEDA, KAYA, SELÇUK, AKÇALI, SİNEM, EFE, ŞİRİN, APAN, TEOMAN ZAFER, US, TERCAN, ASLAN, TURAN, ARSLAN, UĞUR, BAYRAKAL, VAHİDE, ALPAY, YEŞİM, BEŞLİ, YEŞİM, İLKTAÇ, MEHMET, YAKUPOĞULLARI, YUSUF, YALINAY, AYŞE MELTEM, GÜLTEKİN, MERAL, AYDIN, MERVE, AÇIKGÖZ, ZİYACİBALİ, MENGELOĞLU, FIRAT ZAFER, OTAĞ, ZEHRA FEZA, SÖNMEZ TAMER, ZEYNEP GÜLDEN, and SAYINER, AYÇA ARZU
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- 2017
9. Investigation of Human Papillomavirus Prevalence in Women in Eskişehir, Turkey by Pap Smear, Hybrid Capture 2 Test and Consensus Real-Time Polymerase Chain Reaction and Typing with Pyrosequencing Method
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ASLAN, Ferhat Gürkan, primary, US, Tercan, additional, KAŞİFOĞLU, Nilgün, additional, ÖZALP, Sabit Sinan, additional, AKGÜN, Yurdanur, additional, and ÖGE, Tufan, additional
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- 2016
- Full Text
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10. Parvovirus B19 Infections in Pregnant Women and Neonates: Review
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KAŞİFOĞLU, Nilgün, primary and US, Tercan, additional
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- 2016
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11. The role of methotrexate and low‐dose prednisolone on adiponectine levels and insulin resistance in patients with rheumatoid arthritis naïve to disease‐modifying antirheumatic drugs
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Yaşar Bilge, Nazife Şule, primary, Kaşifoğlu, Nilgün, additional, Kaşifoğlu, Timuçin, additional, Şahin, Fezan, additional, Gönüllü, Emel, additional, and Korkmaz, Cengiz, additional
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- 2015
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12. Real time reverse transkriptaz kantitatif PCR ile saptanan HCV-RNA ile anti-HCV sonuçlarının karşılaştırılması
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Kaşifoğlu, Nilgün and Mikrobiyoloji Anabilim Dalı
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Mikrobiyoloji ,Microbiology - Abstract
ÖZET Bu çalışmada, Real Time Reverse Transkriptaz kantitatif PCR ile saptanan HCV RNA ile anti-HCV sonuçları karşılaştırılmış; parametrelerin, hastalardaki ALT ve AST düzeyleriyle ilişkili olup olmadığı incelenmiştir. Çalışmada, Ocak 2002 ve Aralık 2004 tarihleri arasmda, Osmangazi Üniversitesi Tıp Fakültesi'nin farklı servislerinden 508 sayıdaki hastadan istenen 690 sayıdaki test değerlendirilmiştir. Hastaların eş zamanlı olarak bakılan anti-HCV, HCV RNA durumları ile AST ve ALT değerleri incelenmiştir. Çalışma grubumuzda anti-HCV pozitif örnek sayısı anti-HCV negatif örnek sayısından daha fazla bulunmuştur. Karaciğer enzim yüksekliği olan grup incelendiğinde her iki enzimin yüksek olduğu grup tek basma ALT veya AST yüksekliklerinden daha fazla bulunmuştur. HCV RNA pozitif olan örneklerden, tek basma ALT veya AST yüksekliği olanlar, ALT ve AST yüksekliği olanlar ve transaminaz düzeyleri normal olanlar arasında farklılık olmadığı saptanmıştır. Anti-HCV negatif olan örnekler içinde % 8.5 oranında HCV RNA pozitifliği saptanmıştır. Anti-HCV negatif viremik hastaların bulunabileceği; özellikle şüpheli ve serokonversiyon gelişmeyen olguların değerlendirilmesinde PCR' in önemli bir test olabileceği düşünülmüştür. 38 47
- Published
- 2005
13. Investigation of the Etiologic Role of Parvovirus B19 by Immunologic and Molecular Methods in Rheumatoid Arthritis and Systemic Lupus Erythematosus
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US, Tercan, primary, ÇETİN, Esin, additional, KAŞİFOĞLU, Nilgün, additional, KAŞİFOĞLU, Timuçin, additional, AKGÜN, Yurdanur, additional, and BAL, Cengiz, additional
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- 2013
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14. The role of methotrexate and low-dose prednisolone on adiponectine levels and insulin resistance in patients with rheumatoid arthritis naïve to disease-modifying antirheumatic drugs.
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Yaşar Bilge, Nazife Şule, Kaşifoğlu, Nilgün, Kaşifoğlu, Timuçin, Şahin, Fezan, Gönüllü, Emel, and Korkmaz, Cengiz
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INSULIN resistance , *RHEUMATOID arthritis , *ADIPONECTIN , *METHOTREXATE , *PREDNISOLONE - Abstract
Aim Insulin resistance ( IR) plays an important role in the development of cardiovascular events in rheumatoid arthritis ( RA) patients. Adiponectin influences insulin sensitivity but its impact on IR in RA patients remains unclear. The present study aims to investigate the role of methotrexate ( MTX) and low doses of prednisolone ( LDP) on IR and adiponectin levels in RA patients who are naïve to disease-modifying antirheumatic drugs ( DMARDs), as well as determining the relationship between disease activity, acute phase response, IR and adiponectin levels in patients with RA. Methods Sixty-five RA patients naïve to DMARDs and prednisolone were involved in this study. The medication for RA patients was standardized for MTX and prednisolone. Body mass index, acute phase response reactants, 28-joint-count disease activity score, fasting blood glucose, serum cholesterol levels, insulin levels and adiponectin levels were measured in all RA patients both at the baseline and 3 months after the onset of the study. Results Adiponectin levels in the third month of the therapy with MTX and LDP were significantly increased in patients with RA ( P = 0.03). Insulin resistance tended to decrease in the third month of the treatment, which achieved no statistical significance. Conclusion Increased levels of adiponectin due to MTX and LDP could be related to the decrease in homeostasis model assessment insulin resistance ( HOMA- IR) in RA patients. This, in turn, could prove advantageous for cardiovascular conditions in RA. [ABSTRACT FROM AUTHOR]
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- 2016
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15. Eskişehir'de Kadınlarda İnsan Papillomavirus Prevalansının, Pap Yayması, Hibrid Yakalama 2 Testi ve Konsensus Gerçek Zamanlı Polimeraz Zincir Reaksiyonu ile Araştırılması ve Pirodizileme Yöntemiyle Tiplendirilmesi
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ASLAN, Ferhat Gürkan, US, Tercan, KAŞİFOĞLU, Nilgün, ÖZALP, Sabit Sinan, AKGÜN, Yurdanur, and ÖGE, Tufan
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- 2016
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16. HPV DNA and Pap smear test results in cases with and without cervical pathology.
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Sinan Özalp, Sabit, Us, Tercan, Arslan, Emine, Öge, Tufan, and Kaşifoğlu, Nilgün
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ANALYSIS of variance ,BIOPSY ,CHI-squared test ,COLPOSCOPY ,STATISTICAL correlation ,DNA ,PAP test ,PAPILLOMAVIRUS diseases ,STATISTICS ,T-test (Statistics) ,U-statistics ,DATA analysis - Abstract
Copyright of Journal of the Turkish-German Gynecological Association is the property of Galenos Yayinevi Tic. LTD. STI and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2012
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17. Epstein-barr virus enfeksiyonları tanısında kullanılan yöntemlerin karşılaştırılması
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Öz, Semra, Kaşifoğlu, Nilgün, and Tıbbi Mikrobiyoloji Anabilim Dalı
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Enzyme-linked immunosorbent assay ,Mikrobiyoloji ,Fluorescent antibody technic ,Immunoblotting ,Epstein-barr virus infections ,Microbiology ,Polymerase chain reaction - Abstract
Öz, S. Epstein-Barr Virus Enfeksiyonları Tanısında Kullanılan Yöntemlerin Karşılaştırılması. Eskişehir Osmangazi Üniversitesi Tıp Fakültesi Tıbbi Mikrobiyoloji Anabilim Dalı, Tıpta Uzmanlık Tezi, Eskişehir, 2014. Epstein-Barr Virus (EBV), tüm dünyada ve ülkemizde erişkinlerin % 90'ını enfekte eden Herpesvirus ailesinin bir üyesidir. Primer EBV enfeksiyonu küçük yaşlarda genellikle belirtisiz geçirilir, yaĢ ilerledikçe belirtili seyretme olasılığı artar. Virus kişiden kişiye tükürük ve boğaz salgıları aracılığıyla çıkarılarak, yakın temas, kan ve kontamine eşyalarla bulaşır. Lenfadenopati, ateş, hepatosplenomegali ve farenjitin eşlik ettiği enfeksiyöz mononükleozisin etiyolojik ajanıdır. Nazofaringeal karsinom, Burkitt lenfoma ve immün yetmezliği olan hastalarda görülen lenfoproliferatif hastalıklarla da yakından ilgilidir. Bu çalışmada Eskişehir Osmangazi Üniversitesi Tıp Fakültesi Tıbbi Mikrobiyoloji Anabilim Dalı'na gönderilen EBV enfeksiyonu şüpheli hastaların serumlarında EBV enfeksiyonu tanısında İndirekt Floresan Yöntem (IFA), ELISA, Immunoblot ve Real-Time PCR yöntemleri çalışılmış ve performansları altın standart yöntem olan IFA ile karşılaştırılmıştır. ELISA ile IFA uyumu seronegatiflik için % 100, akut enfeksiyon için % 95.2, yakın zamanda geçirilmiş enfeksiyon için % 57.1, geçirilmiĢ enfeksiyon için % 95.7 ve maternal antikor varlığı için % 66.6 olarak bulunmuştur. Immunoblot ile IFA uyumu seronegatiflik için % 89.4, akut enfeksiyon için % 66.6, yakın zamanda geçirilmiş enfeksiyon için % 28.5, geçirilmiş enfeksiyon için % 95.1 ve maternal antikor varlığı için % 100 bulunmuştur. Immunoblot yönteminin antikorları saptamadaki duyarlılığı ELISA yöntemi ile anti-VCA IgM için aynı, diğer üç antikor için ise yüksek, özgüllüğü dört antikor için de ELISA yönteminden daha düĢük değerde saptanmıĢtır. Akut enfeksiyonda viremi varlığını saptamada Real-Time PCR yönteminin duyarlılığı % 57.1, özgüllüğü % 99.4 bulunmuştur. Sonuç olarak, hastaların demografik özellikleri ve laboratuvarın koşulları birlikte değerlendirilerek en doğru tanı yöntemine karar verilmelidir. Oz, S. Comparison of Diagnostic Methods used in Diagnosis of Epstein–Barr Virus Infections. Eskisehir Osmangazi University Medicine of Faculty, Department of Clinical Microbiology, Eskisehir, 2014. Epstein-Barr Virus (EBV), is a member of Herpesvirus family which infects 90 % of adults all over the world. Primary EBV infection is usually asymptomatic at early ages, and the rate of symptomatic infections increases with age. Virus is excreted through coughing and throat secretions. Blood and other contaminated items, and close contact with infected people are other sources of infection. EBV is an etiologic agent of infectious mononucleosis which is accompanied by lymphadenopathy, fever, hepatosplenomegaly and pharyngitis. It is related to nasopharyngeal carcinoma, Burkitt's lymphoma and lymphoproliferative disorders in patients with immune deficiency. In this study, serum samples from suspected patients of EBV infection were sent to Eskisehir Osmangazi University Medicine of Faculty, Department of Clinical Microbiology, and investigated by IFA, ELISA, Immnunoblot and Real-Time PCR, the performances of these tests were compared with gold standard IFA. The rates of harmony between ELISA and IFA were found as 100 % for seronegative, 95.2 % for acute infection, 57.1 % for recently past infection, 95.7 % for past infection and 66.6 % for presence of maternal antibodies. The rates of harmony between Immunoblot and IFA were found to be 89.4 % for seronegative, 66.6 % for acute infection, 28.5 % for recently past infection, 95.1 % for past infection and 100 % for maternal antibodies. The sensitivity of Immunoblot method for detection of anti-VCA IgM were identical with ELISA and higher for anti-VCA IgG, EBNA IgG, anti-EA antibodies, while the specificity of Immunoblot method for these antibodies were found to be lower. The sensitivity and specificity of Real-Time PCR for detection of viremia in acute infection were found as 57.1 % and 99.4 %, respectively. Evaluation of demographic characteristics of patients and laboratory conditions together are highly useful for the right choice of the diagnostic method. 93
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- 2014
18. HPV DNA and Pap smear test results in cases with and without cervical pathology.
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Ozalp SS, Us T, Arslan E, Oge T, and Kaşifoğlu N
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Objective: The aim of the study was to determine the HPV prevalance and its relation to Pap smear, colposcopy and colposcopy directed biopsy in our region of Eskisehir, Turkey., Material and Methods: A total of 615 women who applied to the outpatient clinic between December 2009 and December 2010 constituted our study population. All patients underwent pelvic examination and Pap smear sampling. Patients who had pathological cervical appearance or Pap smear results of ASCUS, AGUS, LSIL or HSIL were referred to colposcopy. Cervical samples for HPV DNA were taken from the patients before Pap smear sampling during the routine examination or before the colposcopic evaluation., Results: Twenty six of 615 patients (4%) were HPV positive. Of these 26 patients, 12 were positive for HPV type 16, 3 for type 18, 3 for type 51, 2 for type 6, 1 for type 52, 1 for type 33, 1 for type 16 and type 31, 1 for type 6 and 52, 1 for type 56 and 90, 1 for type 39 and 66. In 4 patients with cervical cancer, and in 3 of 4 CIN III cases both HPV DNA and Pap smear were positive. In the Pap smear examination of 615 patients, cytology revealed 35 ASCUS (5.6%) 4 AGUS (0.6%), 2 CIN I (0.3%) results who were negative for HPV DNA. These patients with abnormal cytology (n=41) underwent colposcopy directed biopsy, there were 3 CIN I and 1 CIN III and all the other cervical biopsy results of these patients were benign (inflammation, chronic cervicitis)., Conclusion: HPV positivity in our hospital setting is low which is compatible with other studies in Turkey. In positive HPV cases there is a good correlation between HPV type and positive cervical biopsy results.
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- 2012
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19. [Investigation of Epstein-Barr virus and herpes simplex virus markers by serological and molecular methods in patients with rheumatoid arthritis and systemic lupus erythematosus].
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Us T, Cetin E, Kaşifoğlu N, Kaşifoğlu T, and Akgün Y
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- Adult, Antibodies, Viral blood, Case-Control Studies, DNA, Viral blood, Enzyme-Linked Immunosorbent Assay, Herpesvirus 4, Human genetics, Herpesvirus 4, Human immunology, Humans, Immunoglobulin G blood, Immunoglobulin M blood, Real-Time Polymerase Chain Reaction, Simplexvirus genetics, Simplexvirus immunology, Arthritis, Rheumatoid virology, Epstein-Barr Virus Infections complications, Herpes Simplex complications, Herpesvirus 4, Human isolation & purification, Lupus Erythematosus, Systemic virology, Simplexvirus isolation & purification
- Abstract
Rheumatoid arthritis (RA) and systemic lupus erythematosus (SLE) which are autoimmune diseases usually questioned for their association with many infectious agents have etiopathogenesis related to genetic, immunologic, hormonal and even environmental factors. The most commonly attributed etiologic agents are herpes group viruses. The aim of this study was to investigate the role of Epstein-Barr virus (EBV) and herpes simplex (HSV) viruses in the etiology of RA and SLE. A total of 137 patients (87 RA and 50 SLE; mean age: 33 ± 12 years) who were admitted to Eskisehir Osmangazi University Medical Faculty Rheumatology Department between January 2007-January 2008 and diagnosed according to 1987 ACR (American College of Rheumatology) criteria have been included in the study, together with 50 healthy blood donors (mean age: 35 ± 14 years) as control group. Serum samples obtained from all of the cases were tested for EBV VCA-IgG, VCA-IgM, EA/D-IgG and EBNA-IgG (Trinity Biotech, USA); IgM and IgG antibodies against HSV-1 and HSV-2 by ELISA method (Dia-Pro Diagnostic, Italy), and the presence of viral nucleic acids in blood samples were investigated by real-time quantitative polymerase chain reaction (RTPCR; Qiagen, USA). EBV VCA-IgM was negative in all of the RA, SLE and control group patients. VCA-IgG positivity were 98% and 96%, and for EBNA-IgG 98.5% and 100%, in patient and control groups, respectively. There was no statistically significant difference between the groups regarding VCA-IgG and EBNA- IgG positivity (p> 0.05). On the other hand, EBV EA/D-IgG positivity rate found in the SLE group (34%) was significantly higher than RA (7%) and control (12%) groups (p< 0.001 and p< 0.05, respectively). There was no significant difference between RA and control groups in terms of EA/D-IgG positivity (p> 0.05). Regarding herpes simplex virus serology, HSV1-IgG seropositivity were 99% and 94% and HSV2-IgG positivity were 8% and 12% in the patient and control groups, respectively. There was no statistically significant difference between the groups according to the positivity rates of IgM and IgG specific for HSV-1 and HSV-2 (p> 0.05). All of the cases were found negative in terms of EBV, HSV-1 and HSV- 2 DNAs according to double-checked RT-PCR results. In conclusion, no significant difference was determined for EBV and HSV serologic markers in RA and SLE patients compared to the control group. However, significantly higher rate of EBV EA/D-IgG positivity in SLE patients might have indicated a possible association between SLE and EBV infection. Larger scale, prospective studies including examination of the synovial fluid/tissue samples are required to enlighten the association between SLE and EBV.
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- 2011
20. [Comparison of hepatitis C virus (HCV) RNA and anti-HCV results and evaluation of the relationship between transaminase levels].
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Kaşifoğlu N, Us T, and Akgün Y
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- Biomarkers blood, Hepacivirus genetics, Hepacivirus immunology, Hepatitis C enzymology, Humans, Liver enzymology, Retrospective Studies, Alanine Transaminase blood, Aspartate Aminotransferases blood, Hepacivirus isolation & purification, Hepatitis C diagnosis, Hepatitis C Antibodies blood, RNA, Viral blood
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In this retrospective study, the data of hepatitis C virus (HCV) markers (anti-HCV and HCV-RNA) obtained from the patients who were prediagnosed and/or diagnosed as HCV infection have been comparatively evaluated and the relationship between these markers and transaminase (ALT and AST) levels have been analysed. A total of 690 sera from patients who were followed-up between January 2002 to December 2004 in Eskisehir Osmangazi University Medical Faculty Hospital were included to the study. Anti-HCV (Axsym System HCV version 3.0, Abbott Laboratories, USA) and HCV-RNA (Real-time Taqman Technology, Roboscreen kit and ABI Prism 7700 Perkin Elmer) tests were studied simultaneously and the results were examined together with the levels of ALT and AST of patients. In our study group, 455 (65.9%) of 690 samples were found positive for anti-HCV, while 235 (34.1%) were negative. Of anti-HCV positive patients, 51.6% (235/455) yielded positive and 48.4% (220/455) yielded negative results for HCV-RNA. The rate of anti-HCV negative but HCV-RNA positive sera was detected as 8.5% (20/235). When liver enzyme levels were taken into consideration, of 690 sera 338 (49%) showed normal transaminase levels, while 352 (51%) had elevated ALT and/or AST levels (23 with increased AST, 57 with increased ALT, and 272 with increased ALT and AST). Of the patients who exhibited increased ALT+AST levels (n=272), 50% were found positive for both markers (anti-HCV and HCV-RNA), 17% were only positive for anti-HCV, 3.6% were only positive for HCV-RNA, and 29% were negative for both markers. As a result, since anti-HCV negativity may be detected in viremic patients, molecular methods should be applied especially for the diagnosis of suspected cases and cases without seroconversion.
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- 2007
21. [The relationship between airborne colonization and nosocomial infections in intensive care units].
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Dürmaz G, Kiremitçi A, Akgün Y, Oz Y, Kaşifoğlu N, Aybey A, and Kiraz N
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- Acinetobacter baumannii isolation & purification, Adolescent, Adult, Aged, Bacteremia epidemiology, Conjunctiva microbiology, Cross Infection epidemiology, Female, Humans, Intensive Care Units, Male, Methicillin Resistance, Middle Aged, Nasal Cavity microbiology, Operating Rooms, Pharynx microbiology, Risk Factors, Skin microbiology, Staphylococcus aureus drug effects, Staphylococcus aureus isolation & purification, Surgical Wound Infection epidemiology, Turkey epidemiology, Air Microbiology, Bacteremia microbiology, Cross Infection microbiology, Surgical Wound Infection microbiology
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The relationship between the airborne contaminants obtained from operating theatres and intensive care units and the colonizing and infecting microorganisms isolated from patients were investigated. Air samples were obtained with the biocollector air IDEAL (BioMerieux, France). During the study period (19 weeks), a total of 77 air samples and 870 clinical specimens (swabs from throat, nose, conjunctiva and skin) from 174 patients were collected weekly. Microorganisms were identified by using Vitek system (BioMerieux, France) and conventional methods. According to the criteria of Federal Standard 209E (FD 209E) on cleanrooms, the conventionally ventilated operating- and general surgery rooms, and the anesthesia intensive care unit have been ranked as less than class 3.5 and 3, respectively. The frequency of nosocomial infection related to air-colonization was higher in patients of anestesia intensive care unit (16.4%), than in those of general surgery intensive care unit (4.9%). In general surgery rooms and anesthesia intensive care unit, the most frequent air-colonization related nosocomial infections were surgical wound infections and bacteremia, respectively. The most frequently isolated microorganisms were methicillin resistant Staphylococcus aureus (MRSA) and Acinetobacter baumannii. It can be concluded that, total number of airborne viable particles in the critical areas such as operating theatres and intensive care units, seems to be a significant risk factor for the development of nosocomial infections in immunocompromised patients.
- Published
- 2005
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