127 results on '"Kalams S"'
Search Results
2. Phase 2a safety and immunogenicity testing of DNA and recombinant modified vaccinia ankara virus vaccines expressing virus-like particles
- Author
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Goepfert P, Elizaga M, Montefiori D, Hural J, DeRosa S, Tomaras G, Seaton K, Sato A, Ouedraogo L, Donastorg Y, Cardinali M, Lama J, Baden L, Keefer M, McElrath J, Kalams S, and Robinson H
- Subjects
Immunologic diseases. Allergy ,RC581-607 - Published
- 2012
- Full Text
- View/download PDF
3. P04-15. Prevalence of broadly neutralizing antibody responses during acute/early HIV infection
- Author
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Altfeld M, Kalams S, Sather D, Mikell I, and Stamatatos L
- Subjects
Immunologic diseases. Allergy ,RC581-607 - Published
- 2009
- Full Text
- View/download PDF
4. Interleukin-17A is associated with flow-mediated dilation and interleukin-4 with carotid plaque in persons with HIV
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Wanjalla, C.N., Temu, T.M., Mashayekhi, M., Warren, C.M., Shepherd, B.E., Gangula, R., Fuseini, H., Bailin, S., Gabriel, C.L., Gangula, P., Madhur, M.S., Kalams, S., Mallal, S.A., Harrison, D.G., Beckman, J.A., Koethe, J.R., Wanjalla, C.N., Temu, T.M., Mashayekhi, M., Warren, C.M., Shepherd, B.E., Gangula, R., Fuseini, H., Bailin, S., Gabriel, C.L., Gangula, P., Madhur, M.S., Kalams, S., Mallal, S.A., Harrison, D.G., Beckman, J.A., and Koethe, J.R.
- Abstract
Objective: Chronic inflammation contributes to the high burden of cardiovascular disease (CVD) in persons with HIV (PWH). HIV has broad effects on innate and adaptive immune cells, including innate lymphoid cells (ILCs) and CD4+ T-helper cells. At present, the relationship between CVD and plasma cytokines reflecting ILC/T-helper responses in PWH is not well defined. We investigated relationships between plasma cytokines and subclinical atherosclerosis. Design: A cross-sectional study. Methods: We recruited 70 PWH on a single antiretroviral regimen (efavirenz, teno- fovir, and emtricitabine) with at least 12 months of suppressed viremia and 30 HIVnegative controls. We quantified plasma cytokines and chemokines, including inter- feron-g, interleukin (IL)-4, IL-13, and IL-17A, markers of macrophage activation, and markers of endothelial activation using multiplex assays and ELISA. Cytokines were grouped using Ward's hierarchical clustering. Brachial artery flow-mediated dilation (FMD) and carotid plaque burden were determined using ultrasound. Multivariable linear regression and negative binomial regression analyses were used to assess the relationships of plasma biomarkers and endpoints adjusted for CVD risk factors. Results: We identified three distinct clusters in PWH, one containing Th1/Th2/ILC1/ ILC2 type cytokines, one with Th17/ILC3/macrophage-related cytokines, and a less specific third cluster. Lower FMD was associated with higher plasma IL-17A and macrophage inflammatory protein-1 a. In contrast, IL-4, a Th2/ILC2 type cytokine, was associated with carotid plaque. When HIV-negative controls were added to the models clustering was more diffuse, and these associations were attenuated or absent. Conclusion: Th17/ILC3 and Th2/ILC2-mediated immune mechanisms may have distinct roles in endothelial dysfunction and atherosclerotic plaque formation, respectively, in PWH.
- Published
- 2022
5. Cytotoxic T Lymphocytes and HIV-1-Related Neurologic Disorders
- Author
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Kalams, S. A., Walker, B. D., Capron, A., editor, Compans, R. W., editor, Cooper, M., editor, Koprowski, H., editor, McConnell, I., editor, Melchers, F., editor, Oldstone, M., editor, Olsnes, S., editor, Potter, M., editor, Saedler, H., editor, Vogt, P. K., editor, Wagner, H., editor, Wilson, I., editor, Oldstone, Michael B. A., editor, and Vitković, Ljubiša, editor
- Published
- 1995
- Full Text
- View/download PDF
6. Deep sequence analysis of HIV adaptation following vertical transmission: Importance of human leucocyte antigen-driven selection on the evolution of HIV
- Author
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Gaudieri, S., Currenti, J., John, M., McKinnon, E., Leary, S., Chopra, A., Pilkington, M., Smith, R., Barnett, L., McDonnell, W., Lucas, M., Mallal, S., Conrad, J., Kalams, S., Gaudieri, S., Currenti, J., John, M., McKinnon, E., Leary, S., Chopra, A., Pilkington, M., Smith, R., Barnett, L., McDonnell, W., Lucas, M., Mallal, S., Conrad, J., and Kalams, S.
- Abstract
Background: HIV can adapt to an individual's T cell immune response via mutations that affect antigen recognition and disease outcome. These viral adaptations are specific to the host's human leucocyte antigen (HLA) alleles, as these molecules determine which peptides are presented to T cells. Transmitted viral adaptations can be maintained or undergo reversion in a new host dependent on the cost‐benefit balance. We used the unique features of vertical HIV transmissions, primarily a known source of transmitted virus and sharing of HLA alleles that restrict T cell epitope specificity, to predict the in vivo replicative capacity and immune escape benefit of specific HIV adaptations that could be used to inform vaccine design. Methods: A deep sequencing approach was utilised to determine the HIV clade B quasispecies in 26 confirmed mother‐to‐child transmission pairs where the potential for founder viruses to be pre‐adapted is high due to the pairs being haplo‐identical at HLA loci. This scenario allowed the assessment of the dynamics of known HIV adaptations following transmission in either a non‐selective environment (mediated by HLA mismatched to original selecting HLA), or selective immune environment (mediated by shared HLA alleles). Anti‐HIV‐specific IFN‐ϒ T cell responses were assessed using intracellular cytokine staining. Results: Overall, the transmitted virus was highly adapted to the child's anti‐HIV T cell immune potential. The pattern of reversion and fixation of HIV adaptations following transmission was strongly influenced by the HLA‐driven selective environment of the recipient and provided an insight into the replicative capacity cost associated with specific adaptations. Furthermore, there was evidence of de novo post‐transmission adaptation, representing new targets of the child's T cell responses. These de novo adaptations were more likely to occur at sites relevant to paternally inherited HLA alleles compared to sites relevant to the mother's HLA a
- Published
- 2019
7. Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome
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Lucas, M., Deshpande, P., James, I., Rauch, A., Pfafferott, K., Gaylard, E., Merani, S., Plauzolles, A., Lucas, A., McDonnell, W., Kalams, S., Pilkinton, M., Chastain, C., Barnett, L., Prosser, A., Mallal, S., Fitzmaurice, K., Drummer, H., Ansari, M.A., Pedergnana, V., Barnes, E., John, M., Kelleher, D., Klenerman, P., Gaudieri, S., Lucas, M., Deshpande, P., James, I., Rauch, A., Pfafferott, K., Gaylard, E., Merani, S., Plauzolles, A., Lucas, A., McDonnell, W., Kalams, S., Pilkinton, M., Chastain, C., Barnett, L., Prosser, A., Mallal, S., Fitzmaurice, K., Drummer, H., Ansari, M.A., Pedergnana, V., Barnes, E., John, M., Kelleher, D., Klenerman, P., and Gaudieri, S.
- Abstract
Hepatitis C virus (HCV)-specific T cell responses are critical for immune control of infection. Viral adaptation to these responses, via mutations within regions of the virus targeted by CD8+ T cells, is associated with viral persistence. However, identifying viral adaptation to HCV-specific CD4+ T cell responses has been difficult although key to understanding anti-HCV immunity. In this context, HCV sequence and host genotype from a single source HCV genotype 1B cohort (n = 63) were analyzed to identify viral changes associated with specific human leucocyte antigen (HLA) class II alleles, as these variable host molecules determine the set of viral peptides presented to CD4+ T cells. Eight sites across the HCV genome were associated with HLA class II alleles implicated in infection outcome in this cohort (p ≤ 0.01; Fisher’s exact test). We extended this analysis to chronic HCV infection (n = 351) for the common genotypes 1A and 3A. Variation at 38 sites across the HCV genome were associated with specific HLA class II alleles with no overlap between genotypes, suggestive of genotype-specific T cell targets, which has important implications for vaccine design. Here we show evidence of HCV adaptation to HLA class II-restricted CD4+ T cell pressure across the HCV genome in chronic HCV infection without a priori knowledge of CD4+ T cell epitopes.
- Published
- 2018
8. Evidence of CD4+ T cell-mediated immune pressure on the Hepatitis C virus genome
- Author
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Lucas, M, Deshpande, P, James, I, Rauch, A, Pfafferott, K, Gaylard, E, Merani, S, Plauzolles, A, Lucas, A, McDonnell, W, Kalams, S, Pilkinton, M, Chastain, C, Barnett, L, Prosser, A, Mallal, S, Fitzmaurice, K, Drummer, H, Ansari, MA, Pedergnana, V, Barnes, E, John, M, Kelleher, D, Klenerman, P, Gaudieri, S, Lucas, M, Deshpande, P, James, I, Rauch, A, Pfafferott, K, Gaylard, E, Merani, S, Plauzolles, A, Lucas, A, McDonnell, W, Kalams, S, Pilkinton, M, Chastain, C, Barnett, L, Prosser, A, Mallal, S, Fitzmaurice, K, Drummer, H, Ansari, MA, Pedergnana, V, Barnes, E, John, M, Kelleher, D, Klenerman, P, and Gaudieri, S
- Abstract
Hepatitis C virus (HCV)-specific T cell responses are critical for immune control of infection. Viral adaptation to these responses, via mutations within regions of the virus targeted by CD8+ T cells, is associated with viral persistence. However, identifying viral adaptation to HCV-specific CD4+ T cell responses has been difficult although key to understanding anti-HCV immunity. In this context, HCV sequence and host genotype from a single source HCV genotype 1B cohort (n = 63) were analyzed to identify viral changes associated with specific human leucocyte antigen (HLA) class II alleles, as these variable host molecules determine the set of viral peptides presented to CD4+ T cells. Eight sites across the HCV genome were associated with HLA class II alleles implicated in infection outcome in this cohort (p ≤ 0.01; Fisher's exact test). We extended this analysis to chronic HCV infection (n = 351) for the common genotypes 1A and 3A. Variation at 38 sites across the HCV genome were associated with specific HLA class II alleles with no overlap between genotypes, suggestive of genotype-specific T cell targets, which has important implications for vaccine design. Here we show evidence of HCV adaptation to HLA class II-restricted CD4+ T cell pressure across the HCV genome in chronic HCV infection without a priori knowledge of CD4+ T cell epitopes.
- Published
- 2018
9. Abacavir-Reactive memory T Cells are present in drug naïve individuals
- Author
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Shoukry, N.H., Lucas, A., Lucas, M., Strhyn, A., Keane, N.M., McKinnon, E., Pavlos, R., Moran, E.M., Meyer-Pannwitt, V., Gaudieri, S., D’Orsogna, L., Kalams, S., Ostrov, D.A., Buus, S., Peters, B., Mallal, S., Phillips, E., Shoukry, N.H., Lucas, A., Lucas, M., Strhyn, A., Keane, N.M., McKinnon, E., Pavlos, R., Moran, E.M., Meyer-Pannwitt, V., Gaudieri, S., D’Orsogna, L., Kalams, S., Ostrov, D.A., Buus, S., Peters, B., Mallal, S., and Phillips, E.
- Abstract
Background Fifty-five percent of individuals with HLA-B*57:01 exposed to the antiretroviral drug abacavir develop a hypersensitivity reaction (HSR) that has been attributed to naïve T-cell responses to neo-antigen generated by the drug. Immunologically confirmed abacavir HSR can manifest clinically in less than 48 hours following first exposure suggesting that, at least in some cases, abacavir HSR is due to re-stimulation of a pre-existing memory T-cell population rather than priming of a high frequency naïve T-cell population. Methods To determine whether a pre-existing abacavir reactive memory T-cell population contributes to early abacavir HSR symptoms, we studied the abacavir specific naïve or memory T-cell response using HLA-B*57:01 positive HSR patients or healthy controls using ELISpot assay, intra-cellular cytokine staining and tetramer labelling. Results Abacavir reactive CD8+ T-cell responses were detected in vitro in one hundred percent of abacavir unexposed HLA-B*57:01 positive healthy donors. Abacavir-specific CD8+ T cells from such donors can be expanded from sorted memory, and sorted naïve, CD8+ T cells without need for autologous CD4+ T cells. Conclusions We propose that these pre-existing abacavir-reactive memory CD8+ T-cell responses must have been primed by earlier exposure to another foreign antigen and that these T cells cross-react with an abacavir-HLA-B*57:01-endogenous peptide ligand complex, in keeping with the model of heterologous immunity proposed in transplant rejection.
- Published
- 2015
10. Native envelope-based immunogens derived from critical timepoints in the development of breadth elicit rapid neutralizing antibodies in rabbits
- Author
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Malherbe, DC, primary, Hessell, AJ, additional, Sather, ND, additional, Guo, B, additional, Pandey, S, additional, Pissani, F, additional, Robins, H, additional, Kalams, S, additional, Stamatatos, L, additional, and Haigwood, NL, additional
- Published
- 2012
- Full Text
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11. P04-15. Prevalence of broadly neutralizing antibody responses during acute/early HIV infection
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Mikell, I, primary, Sather, D, additional, Kalams, S, additional, Altfeld, M, additional, and Stamatatos, L, additional
- Published
- 2009
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12. Differential Narrow Focusing of Immunodominant Human Immunodeficiency Virus Gag-Specific Cytotoxic T-Lymphocyte Responses in Infected African and Caucasoid Adults and Children
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Goulder, Philip J. R., primary, Brander, C., additional, Annamalai, K., additional, Mngqundaniso, N., additional, Govender, U., additional, Tang, Y., additional, He, S., additional, Hartman, K. E., additional, O'Callaghan, C. A., additional, Ogg, G. S., additional, Altfeld, M. A., additional, Rosenberg, E. S., additional, Cao, H., additional, Kalams, S. A., additional, Hammond, M., additional, Bunce, M., additional, Pelton, S. I., additional, Burchett, S. A., additional, McIntosh, K., additional, Coovadia, H. M., additional, and Walker, B. D., additional
- Published
- 2000
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13. Lack of strong immune selection pressure by the immunodominant, HLA-A*0201-restricted cytotoxic T lymphocyte response in chronic human immunodeficiency virus-1 infection.
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Brander, C, primary, Hartman, K E, additional, Trocha, A K, additional, Jones, N G, additional, Johnson, R P, additional, Korber, B, additional, Wentworth, P, additional, Buchbinder, S P, additional, Wolinsky, S, additional, Walker, B D, additional, and Kalams, S A, additional
- Published
- 1998
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14. Immunological and Virological Analyses of Persons Infected by Human Immunodeficiency Virus Type 1 while Participating in Trials of Recombinant gp120 Subunit Vaccines
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Connor, R. I., primary, Korber, B. T. M., additional, Graham, B. S., additional, Hahn, B. H., additional, Ho, D. D., additional, Walker, B. D., additional, Neumann, A. U., additional, Vermund, S. H., additional, Mestecky, J., additional, Jackson, S., additional, Fenamore, E., additional, Cao, Y., additional, Gao, F., additional, Kalams, S., additional, Kunstman, K. J., additional, McDonald, D., additional, McWilliams, N., additional, Trkola, A., additional, Moore, J. P., additional, and Wolinsky, S. M., additional
- Published
- 1998
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15. Cytotoxic T-lymphocyte cross-reactivity among different human immunodeficiency virus type 1 clades: implications for vaccine development
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Cao, H, primary, Kanki, P, additional, Sankalé, J L, additional, Dieng-Sarr, A, additional, Mazzara, G P, additional, Kalams, S A, additional, Korber, B, additional, Mboup, S, additional, and Walker, B D, additional
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- 1997
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16. Degenerate and promiscuous recognition by CTL of peptides presented by the MHC class I A3-like superfamily: implications for vaccine development.
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Threlkeld, S C, primary, Wentworth, P A, additional, Kalams, S A, additional, Wilkes, B M, additional, Ruhl, D J, additional, Keogh, E, additional, Sidney, J, additional, Southwood, S, additional, Walker, B D, additional, and Sette, A, additional
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- 1997
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17. Suppression of human immunodeficiency virus type 1 replication by CD8+ cells: evidence for HLA class I-restricted triggering of cytolytic and noncytolytic mechanisms
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Yang, O O, primary, Kalams, S A, additional, Trocha, A, additional, Cao, H, additional, Luster, A, additional, Johnson, R P, additional, and Walker, B D, additional
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- 1997
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18. Identification of type-specific cytotoxic T lymphocyte responses to homologous viral proteins in laboratory workers accidentally infected with HIV-1.
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Sipsas, N V, primary, Kalams, S A, additional, Trocha, A, additional, He, S, additional, Blattner, W A, additional, Walker, B D, additional, and Johnson, R P, additional
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- 1997
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19. Overlapping epitopes in human immunodeficiency virus type 1 gp120 presented by HLA A, B, and C molecules: effects of viral variation on cytotoxic T-lymphocyte recognition
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Wilson, C C, primary, Kalams, S A, additional, Wilkes, B M, additional, Ruhl, D J, additional, Gao, F, additional, Hahn, B H, additional, Hanson, I C, additional, Luzuriaga, K, additional, Wolinsky, S, additional, Koup, R, additional, Buchbinder, S P, additional, Johnson, R P, additional, and Walker, B D, additional
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- 1997
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20. Efficient lysis of human immunodeficiency virus type 1-infected cells by cytotoxic T lymphocytes
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Yang, O O, primary, Kalams, S A, additional, Rosenzweig, M, additional, Trocha, A, additional, Jones, N, additional, Koziel, M, additional, Walker, B D, additional, and Johnson, R P, additional
- Published
- 1996
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21. In vitro T lymphopoiesis of human and rhesus CD34+ progenitor cells
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Rosenzweig, M, primary, Marks, DF, additional, Zhu, H, additional, Hempel, D, additional, Mansfield, KG, additional, Sehgal, PK, additional, Kalams, S, additional, Scadden, DT, additional, and Johnson, RP, additional
- Published
- 1996
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22. T cell receptor usage and fine specificity of human immunodeficiency virus 1-specific cytotoxic T lymphocyte clones: analysis of quasispecies recognition reveals a dominant response directed against a minor in vivo variant.
- Author
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Kalams, S A, primary, Johnson, R P, additional, Dynan, M J, additional, Hartman, K E, additional, Harrer, T, additional, Harrer, E, additional, Trocha, A K, additional, Blattner, W A, additional, Buchbinder, S P, additional, and Walker, B D, additional
- Published
- 1996
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23. Cytotoxic T lymphocytes in asymptomatic long-term nonprogressing HIV-1 infection. Breadth and specificity of the response and relation to in vivo viral quasispecies in a person with prolonged infection and low viral load.
- Author
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Harrer, T, primary, Harrer, E, additional, Kalams, S A, additional, Barbosa, P, additional, Trocha, A, additional, Johnson, R P, additional, Elbeik, T, additional, Feinberg, M B, additional, Buchbinder, S P, additional, and Walker, B D, additional
- Published
- 1996
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24. Ex Vivo Expansion of CD4 Lymphocytes from Human Immunodeficiency Virus Type 1-Infected Persons in the Presence of Combination Antiretroviral Agents
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Wilson, C. C., primary, Wong, J. T., additional, Girard, D. D., additional, Merrill, D. P., additional, Dynan, M., additional, An, D. D., additional, Kalams, S. A., additional, Johnson, R. P., additional, Hirsch, M. S., additional, D'Aquila, R. T., additional, and Walker, B. D., additional
- Published
- 1995
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25. An epitope-selective, transporter associated with antigen presentation (TAP)-1/2-independent pathway and a more general TAP-1/2-dependent antigen-processing pathway allow recognition of the HIV-1 envelope glycoprotein by CD8+ CTL.
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Hammond, S A, primary, Johnson, R P, additional, Kalams, S A, additional, Walker, B D, additional, Takiguchi, M, additional, Safrit, J T, additional, Koup, R A, additional, and Siliciano, R F, additional
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- 1995
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26. Longitudinal analysis of T cell receptor (TCR) gene usage by human immunodeficiency virus 1 envelope-specific cytotoxic T lymphocyte clones reveals a limited TCR repertoire.
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Kalams, S A, primary, Johnson, R P, additional, Trocha, A K, additional, Dynan, M J, additional, Ngo, H S, additional, D'Aquila, R T, additional, Kurnick, J T, additional, and Walker, B D, additional
- Published
- 1994
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27. Stimulation of human cytotoxic T cells with HIV-1-derived peptides presented by recombinant HLA-A2 peptide complexes.
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Walter, J B, Brander, C, Mammen, M, Garboczi, D N, Kalams, S A, Whitesides, G M, Walker, B D, and Eisen, H N
- Abstract
HLA-A2 heavy chain and beta 2-microglobulin were expressed in Escherichia coli, and refolded in the presence of peptides derived from HIV-1 RT and gag proteins. When recombinant HLA-A2 molecules were attached to cells lacking HLA-A2, the cells became susceptible to lysis by HLA-A2-restricted cytotoxic T lymphocyte (CTL) clones specific for peptides derived from RT and gag proteins. Limiting dilution analyses of peripheral blood mononuclear cells from HIV-1-infected individuals showed that the recombinant HLA-A2 peptide complexes covalently immobilized on microspheres stimulated the development of HLA-A2 peptide-specific CTL. Preformed HLA-peptide complexes may provide an alternative to immunization procedures that depend upon intracellular processing of antigen to elicit T cell responses. [ABSTRACT FROM AUTHOR]
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- 1997
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28. High-resolution analysis of T-cell receptor -chain repertoires using DNA heteroduplex tracking: generally stable, clonal CD8+ expansions in all healthy young adults
- Author
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Shen, D.-F., Doukhan, L., Kalams, S., and Delwart, E.
- Published
- 1998
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29. Immunological and virological analyses of persons infected by human immunodeficiency virus type 1 while participating in trials of recombinant gp120 subunit vaccines
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Connor, R. I., Bette Korber, Graham, B. S., Hahn, B. H., Ho, D. D., Walker, B. D., Neumann, A. U., Vermund, S. H., Mestecky, J., Jackson, S., Fenamore, E., Cao, Y., Gao, F., Kalams, S., Kunstman, K. J., Mcdonald, D., Mcwilliams, N., Trkola, A., Moore, J. P., and Wolinsky, S. M.
30. Lack of strong immune selection pressure by the immunodominant, HLA- A*0201-restricted cytotoxic T lymphocyte response in chronic human immunodeficiency virus-1 infection
- Author
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Brander, C., Hartman, K. E., Trocha, A. K., Jones, N. G., Johnson, R. P., Korber, B., Wentworth, P., Buchbinder, S. P., Steven Wolinsky, Walker, B. D., and Kalams, S. A.
31. Cytotoxic T lymphocytes in asymptomatic long-term nonprogressing HIV-1 infection: Breadth and specificity of the response and relation to in vivo viral quasispecies in a person with prolonged infection and low viral load
- Author
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Harrer, T., Harrer, E., Kalams, S. A., Barbosa, P., Trocha, A., Johnson, R. P., Tarek Elbeik, Feinberg, M. B., Buchbinder, S. P., and Walker, B. D.
- Subjects
Immunology ,Immunology and Allergy - Abstract
Although vigorous activated and memory CTL have been associated with HIV-1 infection, data are lacking regarding the breadth of epitopes recognized in a given individual and the relationship to the viral quasispecies present in vivo. In this study we performed a detailed analysis of the HIV-1-specific CTL response in a seropositive person with documented HIV-1 infection of 15 yr duration, stable CD4 counts above 500 cells/ml, and viral load persistently below 500 molecules of RNA/ml of plasma. Epitope mapping studies revealed the presence of HLA class I-restricted CTL responses to six different epitopes in p17, p24, RT, Env, and Nef, which conferred broadly cross-reactive recognition of reported HIV-1 variants. Sequence analysis of autologous viruses revealed the absence of immune escape variants within five of the six epitopes. Despite consistently low viral RNA levels in plasma and viral DNA levels in PBMC, in vivo-activated circulating CTL were detected against three of the epitopes. Five of the six epitopes, including the three dominant epitopes, have been detected in persons with progressive disease, suggesting that nonprogressors may not target unique epitopes. This study demonstrates that HIV-1-specific CTL can be highly activated and broadly directed in the setting of an extremely low viral load, and that neither high viral load nor antigenic diversity is required for the generation of a multispecific CTL response. Although the detection of strong CTL responses, low viral load, and lack of immune escape are consistent with the hypothesis that CTL may contribute to lack of disease progression in this individual, the contribution of these responses to maintenance of the asymptomatic state remains to be determined.
32. First-in-human phase I clinical trial of a recombinant vesicular stomatitis virus (rVSV)-based preventive HIV-1 vaccine
- Author
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Fuchs JD, Frank I, Kochar N, Elizaga M, Allen M, Carter D, Frahm N, Kalams SA, Mulligan M, Sheets R, Pensiero M, Clarke D, and Eldridge J
- Subjects
Immunologic diseases. Allergy ,RC581-607 - Published
- 2012
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- View/download PDF
33. In vitro T lymphopoiesis of human and rhesus CD34+ progenitor cells
- Author
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Rosenzweig, M., Marks, D.F., Zhu, H.H., Hempel, D., Mansfield, K.G., Sehgal, P.K., Kalams, S., Scadden, D.T., and Johnson, R.P.
- Subjects
T cells -- Differentiation ,Hematopoietic stem cells -- Physiological aspects - Abstract
According to the authors' abstract of an article published in Blood, "Differentiation of hematopoietic progenitor cells into T lymphocytes generally occurs in the unique environment of the thymus, a feature [...]
- Published
- 1996
34. Latent infection of cells in HIV disease: abstract and commentary.
- Author
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Kalams, S A
- Subjects
- *
ANTI-HIV agents , *HIV , *COMPARATIVE studies , *HIV infections , *IMMUNITY , *RESEARCH methodology , *MEDICAL cooperation , *RESEARCH , *T cells , *VIRAL physiology , *VIRAL load , *EVALUATION research , *PHYSIOLOGY - Published
- 1998
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35. Omicron COVID-19 immune correlates analysis of a third dose of mRNA-1273 in the COVE trial.
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Zhang B, Fong Y, Fintzi J, Chu E, Janes HE, Kenny A, Carone M, Benkeser D, van der Laan LWP, Deng W, Zhou H, Wang X, Lu Y, Yu C, Borate B, Chen H, Reeder I, Carpp LN, Houchens CR, Martins K, Jayashankar L, Huynh C, Fichtenbaum CJ, Kalams S, Gay CL, Andrasik MP, Kublin JG, Corey L, Neuzil KM, Priddy F, Das R, Girard B, El Sahly HM, Baden LR, Jones T, Donis RO, Koup RA, Gilbert PB, and Follmann D
- Subjects
- Humans, COVID-19 Vaccines immunology, COVID-19 Vaccines administration & dosage, Female, Male, Adult, Vaccine Efficacy, COVID-19 immunology, COVID-19 virology, COVID-19 prevention & control, SARS-CoV-2 immunology, Antibodies, Neutralizing immunology, Antibodies, Viral immunology, Antibodies, Viral blood, Spike Glycoprotein, Coronavirus immunology, Immunization, Secondary, 2019-nCoV Vaccine mRNA-1273 administration & dosage, 2019-nCoV Vaccine mRNA-1273 immunology
- Abstract
In the phase 3 Coronavirus Efficacy (COVE) trial (NCT04470427), post-dose two Ancestral Spike-specific binding (bAb) and neutralizing (nAb) antibodies were shown to be correlates of risk (CoR) and of protection against Ancestral-lineage COVID-19 in SARS-CoV-2 naive participants. In the SARS-CoV-2 Omicron era, Omicron subvariants with varying degrees of immune escape now dominate, seropositivity rates are high, and booster doses are administered, raising questions on whether and how these developments affect the bAb and nAb correlates. To address these questions, we assess post-boost BA.1 Spike-specific bAbs and nAbs as CoRs and as correlates of booster efficacy in COVE. For naive individuals, bAbs and nAbs inversely correlate with Omicron COVID-19: hazard ratios (HR) per 10-fold marker increase (95% confidence interval) are 0.16 (0.03, 0.79) and 0.31 (0.10, 0.96), respectively. In non-naive individuals the analogous results are similar: 0.15 (0.04, 0.63) and 0.28 (0.07, 1.08). For naive individuals, three vs two-dose booster efficacy correlates with predicted nAb titer at exposure, with estimates -8% (-126%, 48%), 50% (25%, 67%), and 74% (49%, 87%), at 56, 251, and 891 Arbitrary Units/ml. These results support the continued use of antibody as a surrogate endpoint., (© 2024. This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply.)
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- 2024
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36. Protein Dose-Sparing Effect of AS01B Adjuvant in a Randomized Preventive HIV Vaccine Trial of ALVAC-HIV (vCP2438) and Adjuvanted Bivalent Subtype C gp120.
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Chirenje ZM, Laher F, Dintwe O, Muyoyeta M, deCamp AC, He Z, Grunenberg N, Laher Omar F, Seaton KE, Polakowski L, Woodward Davis AS, Maganga L, Baden LR, Mayer K, Kalams S, Keefer M, Edupuganti S, Rodriguez B, Frank I, Scott H, Stranix-Chibanda L, Gurunathan S, Koutsoukos M, Van Der Meeren O, DiazGranados CA, Paez C, Andersen-Nissen E, Kublin J, Corey L, Ferrari G, Tomaras G, and McElrath MJ
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- Humans, Female, Adult, Male, Young Adult, Adolescent, Double-Blind Method, Squalene administration & dosage, Polysorbates administration & dosage, HIV-1 immunology, Viral Vaccines, Adjuvants, Immunologic administration & dosage, AIDS Vaccines immunology, AIDS Vaccines administration & dosage, AIDS Vaccines adverse effects, HIV Infections prevention & control, HIV Infections immunology, HIV Envelope Protein gp120 immunology, HIV Antibodies blood, HIV Antibodies immunology
- Abstract
Background: HVTN 120 is a phase 1/2a randomized double-blind placebo-controlled human immunodeficiency virus (HIV) vaccine trial that evaluated the safety and immunogenicity of ALVAC-HIV (vCP2438) and MF59- or AS01B-adjuvanted bivalent subtype C gp120 Env protein at 2 dose levels in healthy HIV-uninfected adults., Methods: Participants received ALVAC-HIV (vCP2438) alone or placebo at months 0 and 1. At months 3 and 6, participants received either placebo, ALVAC-HIV (vCP2438) with 200 μg of bivalent subtype C gp120 adjuvanted with MF59 or AS01B, or ALVAC-HIV (vCP2438) with 40 μg of bivalent subtype C gp120 adjuvanted with AS01B. Primary outcomes were safety and immune responses., Results: We enrolled 160 participants, 55% women, 18-40 years old (median age 24 years) of whom 150 received vaccine and 10 placebo. Vaccines were generally safe and well tolerated. At months 6.5 and 12, CD4+ T-cell response rates and magnitudes were higher in the AS01B-adjuvanted groups than in the MF59-adjuvanted group. At month 12, HIV-specific Env-gp120 binding antibody response magnitudes in the 40 μg gp120/AS01B group were higher than in either of the 200 μg gp120 groups., Conclusions: The 40 μg dose gp120/AS01B regimen elicited the highest CD4+ T-cell and binding antibody responses. Clinical Trials Registration . NCT03122223., Competing Interests: Potential conflicts of interest. S. G. is an employee of Sanofi Pasteur and C. A. D. G. was employed by Sanofi Pasteur at the time of the study. M. Ko. and O. V. D. M. are employees of GSK and hold shares in GSK. All other authors report no potential conflicts. Funding to pay the Open Access publication charges for this article was provided by the NIH. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed., (© The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America.)
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- 2024
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37. Epistatic interaction between ERAP2 and HLA modulates HIV-1 adaptation and disease outcome in an Australian population.
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Al-Kaabi M, Deshpande P, Firth M, Pavlos R, Chopra A, Basiri H, Currenti J, Alves E, Kalams S, Fellay J, Phillips E, Mallal S, John M, and Gaudieri S
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- Humans, Australia, Male, Female, HLA Antigens genetics, Viral Load, Adult, Middle Aged, Aminopeptidases genetics, HIV Infections immunology, HIV Infections genetics, HIV Infections virology, HIV-1 immunology, HIV-1 genetics, Epistasis, Genetic, Polymorphism, Single Nucleotide
- Abstract
A strong genetic predictor of outcome following untreated HIV-1 infection is the carriage of specific alleles of human leukocyte antigens (HLAs) that present viral epitopes to T cells. Residual variation in outcome measures may be attributed, in part, to viral adaptation to HLA-restricted T cell responses. Variants of the endoplasmic reticulum aminopeptidases (ERAPs) influence the repertoire of T cell epitopes presented by HLA alleles as they trim pathogen-derived peptide precursors to optimal lengths for antigen presentation, along with other functions unrelated to antigen presentation. We investigated whether ERAP variants influence HLA-associated HIV-1 adaptation with demonstrable effects on overall HIV-1 disease outcome. Utilizing host and viral data of 249 West Australian individuals with HIV-1 subtype B infection, we identified a novel association between two linked ERAP2 single nucleotide polymorphisms (SNPs; rs2248374 and rs2549782) with plasma HIV RNA concentration (viral load) (P adjusted = 0.0024 for both SNPs). Greater HLA-associated HIV-1 adaptation in the HIV-1 Gag gene correlated significantly with higher viral load, lower CD4+ T cell count and proportion; P = 0.0103, P = 0.0061, P = 0.0061, respectively). When considered together, there was a significant interaction between the two ERAP2 SNPs and HLA-associated HIV-1 adaptation on viral load (P = 0.0111). In a comprehensive multivariate model, addition of ERAP2 haplotypes and HLA associated adaptation as an interaction term to known HLA and CCR5 determinants and demographic factors, increased the explanatory variance of population viral load from 17.67% to 45.1% in this dataset. These effects were not replicated in publicly available datasets with comparably sized cohorts, suggesting that any true global epistasis may be dependent on specific HLA-ERAP allelic combinations. Our data raises the possibility that ERAP2 variants may shape peptide repertoires presented to HLA class I-restricted T cells to modulate the degree of viral adaptation within individuals, in turn contributing to disease variability at the population level. Analyses of other populations and experimental studies, ideally with locally derived ERAP genotyping and HLA-specific viral adaptations are needed to elucidate this further., Competing Interests: The authors have declared that no competing interests exist., (Copyright: © 2024 Al-kaabi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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- 2024
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38. Polytopic fractional delivery of an HIV vaccine alters cellular responses and results in increased epitope breadth in a phase 1 randomized trial.
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Miner MD, deCamp A, Grunenberg N, De Rosa SC, Fiore-Gartland A, Bar K, Spearman P, Allen M, Yu PC, Manso B, Frahm N, Kalams S, Baden L, Keefer MC, Scott HM, Novak R, Van Tieu H, Tomaras GD, Kublin JG, McElrath MJ, Corey L, and Frank I
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- Humans, Epitopes, CD4-Positive T-Lymphocytes, Vaccination, Immunoglobulin G, AIDS Vaccines, HIV Infections
- Abstract
Background: Elicitation of broad immune responses is understood to be required for an efficacious preventative HIV vaccine. This Phase 1 randomized controlled trial evaluated whether administration of vaccine antigens separated at multiple injection sites vs combined, fractional delivery at multiple sites affected T-cell breadth compared to standard, single site vaccination., Methods: We randomized 90 participants to receive recombinant adenovirus 5 (rAd5) vector with HIV inserts gag, pol and env via three different strategies. The Standard group received vaccine at a single anatomic site (n = 30) compared to two polytopic (multisite) vaccination groups: Separated (n = 30), where antigens were separately administered to four anatomical sites, and Fractioned (n = 30), where fractions of each vaccine component were combined and administered at four sites. All groups received the same total dose of vaccine., Findings: CD8 T-cell response rates and magnitudes were significantly higher in the Fractioned group than Standard for several antigen pools tested. CD4 T-cell response magnitudes to Pol were higher in the Separated than Standard group. T-cell epitope mapping demonstrated greatest breadth in the Fractioned group (median 8.0 vs 2.5 for Standard, Wilcoxon p = 0.03; not significant after multiplicity adjustment for co-primary endpoints). IgG binding antibody response rates to Env were higher in the Standard and Fractioned groups vs Separated group., Interpretation: This study shows that the number of anatomic sites for which a vaccine is delivered and distribution of its antigenic components influences immune responses in humans., Funding: National Institute of Allergy and Infectious Diseases, NIH., Competing Interests: Declaration of interests MAA is employed by NIAID, the funder of the study. HVT, KJB, SAK, AFG, LC, GDT, NF, NG, SCDR reports receiving institutional grants from the NIH. IF reports institutional grants and participation on Boards of Gilead and Viiv; LB reports institutional grants and participation on Boards of the FDA and NIAID; MJM reports institutional grants, participation on Boards of Ragon Institute, Keystone Symposia and NIH VRC, and a patent on HIV immunogens. The rest of the authors as well as HVTN 085 Study Team declare no conflicts of interest., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)
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- 2024
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39. Comparison of Two High-Dose Versus Two Standard-Dose Influenza Vaccines in Adult Allogeneic Hematopoietic Cell Transplant Recipients.
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Thomas LD, Batarseh E, Hamdan L, Haddadin Z, Dulek D, Kalams S, Stewart LS, Stahl AL, Rahman H, Amarin JZ, Hayek H, Ison M, Overton ET, Pergam SA, Spieker AJ, and Halasa NB
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- Humans, Male, Middle Aged, Female, Adult, Double-Blind Method, Young Adult, Aged, Transplant Recipients, Influenza A Virus, H3N2 Subtype immunology, Hemagglutination Inhibition Tests, Influenza A Virus, H1N1 Subtype immunology, Transplantation, Homologous, Vaccination methods, Influenza B virus immunology, Immunogenicity, Vaccine, Influenza Vaccines administration & dosage, Influenza Vaccines immunology, Hematopoietic Stem Cell Transplantation, Influenza, Human prevention & control, Influenza, Human immunology, Antibodies, Viral blood
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Background: Adult hematopoietic cell transplant (HCT) recipients are at high risk for influenza-related morbidity and mortality and have suboptimal influenza vaccine immune responses compared to healthy adults, particularly within 2 years of transplant., Methods: This phase II, double-blind, multicenter randomized controlled trial compared 2 doses of high-dose trivalent (HD-TIV) to 2 doses of standard-dose quadrivalent (SD-QIV) influenza vaccine administered 1 month apart in adults 3-23 months post-allogeneic HCT. Hemagglutinin antibody inhibition (HAI) titers were measured at baseline, 4 weeks following each vaccine dose, and approximately 7 months post-second vaccination. Injection-site and systemic reactions were assessed for 7 days post-vaccination. The primary immunogenicity comparison was geometric mean HAI titer (GMT) at visit 3 (4 weeks after the second dose); we used linear mixed models to estimate adjusted GMT ratios (aGMRs) comparing HD-TIV/SD-QIV for each antigen., Results: We randomized 124 adults; 64 received SD-QIV and 60 received HD-TIV. Following the second vaccination, HD-TIV was associated with higher GMTs compared to SD-QIV for A/H3N2 (aGMR = 2.09; 95% confidence interval [CI]: [1.19, 3.68]) and B/Victoria (aGMR = 1.61; 95% CI: [1.00, 2.58]). The increase was not statistically significant for A/H1N1 (aGMR = 1.16; 95% CI: [0.67, 2.02]). There was a trend to more injection-site reactions for HD-TIV after the second vaccination compared to SD-QIV (50% vs 33%; adjusted odds ratio [aOR] = 4.53; 95% CI: [0.71, 28.9]), whereas systemic reactions were similar between groups with both injections., Conclusions: Adult allogeneic HCT recipients who received 2 doses of HD-TIV produced higher HAI antibody responses for A/H3N2 and B/Victoria compared with 2 doses of SD-QIV, with comparable injection-site or systemic reactions., Competing Interests: Potential conflicts of interest. M. I. has received research support, paid to Northwestern University, from GlaxoSmithKline and reports grant number UL1TR001422, which supported the author and the research capacity used for this project; payment for consultation from Adagio, ADMA Biologics, Adamis, AlloVir, Atea, Cidara, Genetech, Invivyd, Inc, Roche, Janssen, Shionogi, Takeda, Telaris, and Viracor Eurofins; royalties from UpToDate, and is a paid member of an independent data monitoring committee for Adamis, AlloVir, Merck, Sequiris/CSL, Takeda and Talaris. He also reports a role as Chair of ISIRV AVG and as Editor-in-Chief of Transplant Infectious Disease. All conflicts were ended effective 4 December 2022 except for UpToDate. S. A. P. receives research support from Global Life Technologies, Inc, and he participates in clinical trials with F2G, Symbio, and Cidarra. He also reports that Sanofi Pasteur supplied vaccines and hemagglutination titers for this study. N. B. H. has formerly received grant funding from SANOFI and Quidel. She currently receives funding from Merck for an investigator-initiated grant. D. D. reports that Eurofins-Viracor provided assay performance for investigator-initiated research on cytomegalovirus (no payments made); consulting fees paid to author from Horizon Pharmaceuticals. S. K. reports that Sanofi Pasteur supplied vaccines and hemagglutination titers for this study. A. J. S reports participation on a Data Safety Monitoring Board or Advisory Board for Integrated Health Services to reduce opioid use while managing chronic pain and the effect and contribution of a perioperative ketamine infusion in an established enhanced recovery pathway. H. H. reports VIPER T32 grant. E. T. O. reports grants or contracts paid to institution from ViiV Healthcare, Gilead Sciences, and Janssen. L. D. T. reports Sanofi Pasteur supplied vaccines and hemagglutination titers for this study. All other authors report no potential conflicts. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed., (© The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America.)
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- 2023
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40. Safety, tolerability, pharmacokinetics, and immunological activity of dual-combinations and triple-combinations of anti-HIV monoclonal antibodies PGT121, PGDM1400, 10-1074, and VRC07-523LS administered intravenously to HIV-uninfected adults: a phase 1 randomised trial.
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Sobieszczyk ME, Mannheimer S, Paez CA, Yu C, Gamble T, Theodore DA, Chege W, Yacovone M, Hanscom B, Heptinstall J, Seaton KE, Zhang L, Miner MD, Eaton A, Weiner JA, Mayer K, Kalams S, Stephenson K, Julg B, Caskey M, Nussenzweig M, Gama L, Barouch DH, Ackerman ME, Tomaras GD, Huang Y, and Montefiori D
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- Adult, Female, Humans, Middle Aged, Young Adult, Antibodies, Monoclonal, Antibodies, Neutralizing, Broadly Neutralizing Antibodies therapeutic use, HIV Antibodies, Polysaccharides therapeutic use, Male, HIV Infections drug therapy, HIV Infections prevention & control, HIV-1
- Abstract
Background: Preclinical and clinical studies suggest that combinations of broadly neutralising antibodies (bnAbs) targeting different HIV envelope epitopes might be required for sufficient prevention of infection. We aimed to evaluate the dual and triple anti-HIV bnAb combinations of PGDM1400 (V2 Apex), PGT121 (V3 glycan), 10-1074 (V3 glycan), and VRC07-523LS (CD4 binding site)., Methods: In this phase 1 trial (HVTN 130/HPTN 089), adults without HIV were randomly assigned (1:1:1) to three dual-bnAb treatment groups simultaneously, or the triple-bnAb group, receiving 20 mg/kg of each antibody administered intravenously at four centres in the USA. Participants received a single dose of PGT121 + VRC07-523LS (treatment one; n=6), PGDM1400 + VRC07-523LS (treatment two; n=6), or 10-1074 + VRC07-523LS (treatment three; n=6), and two doses of PGDM1400 + PGT121 + VRC07-523LS (treatment four; n=9). Primary outcomes were safety, pharmacokinetics, and neutralising activity. Safety was determined by monitoring for 60 min after infusions and throughout the study by collecting laboratory assessments (ie, blood count, chemistry, urinalysis, and HIV), and solicited and unsolicited adverse events (via case report forms and participant diaries). Serum concentrations of each bnAb were measured by binding antibody assays on days 0, 3, 6, 14, 28, 56, 112, 168, 224, 280, and 336, and by serum neutralisation titres against Env-pseudotyped viruses on days 0, 3, 28, 56, and 112. Pharmacokinetic parameters were estimated by use of two-compartment population pharmacokinetic models; combination bnAb neutralisation titres were directly measured and assessed with different interaction models. This trial is registered with ClinicalTrials.gov, NCT03928821, and has been completed., Findings: 27 participants were enrolled from July 31, to Dec 20, 2019. The median age was 26 years (range 19-50), 16 (58%) of 27 participants were assigned female sex at birth, and 24 (89%) participants were non-Hispanic White. Infusions were safe and well tolerated. There were no statistically significant differences in pharmacokinetic patterns between the dual and triple combinations of PGT121, PGDM1400, and VRC07-523LS. The median estimated elimination half-lives of PGT121, PGDM1400, 10-1074, and VRC07-523LS were 32·2, 25·4, 27·5, and 52·9 days, respectively. Neutralisation coverage against a panel of 12 viruses was greater in the triple-bnAb versus dual-bnAb groups: area under the magnitude-breadth curve at day 28 was 3·1, 2·9, 3·0, and 3·4 for treatments one to four, respectively. The Bliss-Hill multiplicative interaction model, which assumes complementary neutralisation with no antagonism or synergism among the bnAbs, best described combination bnAb titres in the dual-bnAb and triple-bnAb groups., Interpretation: No pharmacokinetic interactions among the bnAbs and no loss of complementary neutralisation were observed in the dual and triple combinations. This study lays the foundation for designing future combination bnAb HIV prevention efficacy trials., Funding: US National Institute of Allergy and Infectious Diseases, US National Institute on Drug Abuse, US National Institute of Mental Health, and the Eunice Kennedy Shriver National Institute of Child Health and Human Development., Competing Interests: Declaration of interests MES received funding from the US National Institutes of Health paid to the institution for bnAb prevention studies. BJ is a part-time employee and equity holder of Leyden Laboratories, a company developing pandemic prevention therapeutics. All other authors declare no competing interests., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
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- 2023
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41. Cellular and humoral responses to an HIV DNA prime by electroporation boosted with recombinant vesicular stomatitis virus expressing HIV subtype C Env in a randomized controlled clinical trial.
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Wilson GJ, Rodriguez B, Li SS, Allen M, Frank I, Rudnicki E, Trahey M, Kalams S, Hannaman D, Clarke DK, Xu R, Egan M, Eldridge J, Pensiero M, Latham T, Ferrari G, Montefiori DC, Tomaras GD, De Rosa SC, Jacobson JM, Miner MD, and Elizaga M
- Subjects
- Adult, Animals, Humans, Immunization, Secondary, Electroporation, Antibodies, Neutralizing, DNA, HIV Antibodies, HIV Infections prevention & control, Vesicular Stomatitis, AIDS Vaccines, Vaccines, DNA
- Abstract
Background: HIV subtypes B and C together account for around 60% of HIV-1 cases worldwide. We evaluated the safety and immunogenicity of a subtype B DNA vaccine prime followed by a subtype C viral vector boost., Methods: Fourteen healthy adults received DNA plasmid encoding HIV-1 subtype B nef/tat/vif and env (n = 11) or placebo (n = 3) intramuscularly (IM) via electroporation (EP) at 0, 1, and 3 months, followed by IM injection of recombinant vesicular stomatitis virus encoding subtype C Env or placebo at 6 and 9 months. Participants were assessed for safety, tolerability of EP, and Env-specific T-cell and antibody responses., Results: EP was generally well tolerated, although some device-related adverse events did occur, and vaccine reactogenicity was mild to moderate. The vaccine stimulated Env-specific CD4 + T-cell responses in greater than 80% of recipients, and CD8 + T-cell responses in 30%. Subtype C Env-specific IgG binding antibodies (bAb) were elicited in all vaccine recipients, and antibody-dependent cell-mediated cytotoxicity (ADCC) responses to vaccine-matched subtype C targets in 80%. Negligible V1/V2 and neutralizing antibody (nAb) responses were detected., Conclusions: This prime/boost regimen was safe and tolerable, with some device-related events, and immunogenic. Although immunogenicity missed targets for an HIV vaccine, the DNA/rVSV platform may be useful for other applications., Clinicaltrials: gov: NCT02654080., Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: The following authors declare no conflicts of interest: MT, MDM, JE, DCM, JMJ, ME, DKC, GJW, GDT, GF, SK, ER, ME, TL, RX, SL. MA and MP are employed by NIAID but had no role in the funding decisions or grant oversight. DH is a full-time employee of Ichor Medical Systems, Inc. and receives a salary and equity for this work. SCDR reports funding from NIH, Bill & Melinda Gates Foundation for the work. IF gets research support from Moderna, Janssen, Pfizer and Sanofi, and is a consultant for Gilead, GlaxoSmithKline and Merck., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
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- 2023
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42. Functional HIV-1/HCV cross-reactive antibodies isolated from a chronically co-infected donor.
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Pilewski KA, Wall S, Richardson SI, Manamela NP, Clark K, Hermanus T, Binshtein E, Venkat R, Sautto GA, Kramer KJ, Shiakolas AR, Setliff I, Salas J, Mapengo RE, Suryadevara N, Brannon JR, Beebout CJ, Parks R, Raju N, Frumento N, Walker LM, Fechter EF, Qin JS, Murji AA, Janowska K, Thakur B, Lindenberger J, May AJ, Huang X, Sammour S, Acharya P, Carnahan RH, Ross TM, Haynes BF, Hadjifrangiskou M, Crowe JE Jr, Bailey JR, Kalams S, Morris L, and Georgiev IS
- Subjects
- Humans, Hepacivirus, Antibodies, Neutralizing, SARS-CoV-2, HIV Antibodies, HIV-1, Coinfection, HIV Infections, COVID-19, Hepatitis C
- Abstract
Despite prolific efforts to characterize the antibody response to human immunodeficiency virus type 1 (HIV-1) and hepatitis C virus (HCV) mono-infections, the response to chronic co-infection with these two ever-evolving viruses is poorly understood. Here, we investigate the antibody repertoire of a chronically HIV-1/HCV co-infected individual using linking B cell receptor to antigen specificity through sequencing (LIBRA-seq). We identify five HIV-1/HCV cross-reactive antibodies demonstrating binding and functional cross-reactivity between HIV-1 and HCV envelope glycoproteins. All five antibodies show exceptional HCV neutralization breadth and effector functions against both HIV-1 and HCV. One antibody, mAb688, also cross-reacts with influenza and coronaviruses, including severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). We examine the development of these antibodies using next-generation sequencing analysis and lineage tracing and find that somatic hypermutation established and enhanced this reactivity. These antibodies provide a potential future direction for therapeutic and vaccine development against current and emerging infectious diseases. More broadly, chronic co-infection represents a complex immunological challenge that can provide insights into the fundamental rules that underly antibody-antigen specificity., Competing Interests: Declaration of interests K.A.P. and I.S.G. are listed as inventors on patents filed describing the antibodies discovered here. A.R.S. and I.S.G. are co-founders of AbSeek Bio. J.E.C. has served as a consultant for Luna Biologics, is a member of the Scientific Advisory Board of Meissa Vaccines, and is founder of IDBiologics. The Crowe laboratory at Vanderbilt University Medical Center has received sponsored research agreements from Takeda Vaccines, IDBiologics, and AstraZeneca. The Georgiev laboratory at Vanderbilt University Medical Center has received unrelated funding from Takeda Pharmaceuticals., (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
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- 2023
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43. HLA-II-Associated HIV-1 Adaptation Decreases CD4 + T-Cell Responses in HIV-1 Vaccine Recipients.
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Files JK, Sterrett S, Henostroza S, Fucile C, Maroney K, Fram T, Mallal S, Kalams S, Carlson J, Rosenberg A, Erdmann N, Bansal A, and Goepfert PA
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- Broadly Neutralizing Antibodies immunology, Clinical Trials as Topic, HIV Antibodies biosynthesis, HIV Antibodies immunology, Humans, AIDS Vaccines immunology, Antibody Formation, CD4-Positive T-Lymphocytes immunology, Epitopes, T-Lymphocyte immunology, HIV Infections immunology, HIV Infections prevention & control, HIV Infections virology, HIV-1 immunology, HLA-D Antigens immunology, Immune Evasion
- Abstract
Epitopes with evidence of HLA-II-associated adaptation induce poorly immunogenic CD4
+ T-cell responses in HIV-positive (HIV+ ) individuals. Many such escaped CD4+ T-cell epitopes are encoded by HIV-1 vaccines being evaluated in clinical trials. Here, we assessed whether this viral adaptation adversely impacts CD4+ T-cell responses following HIV-1 vaccination, thereby representing escaped epitopes. When evaluated in separate peptide pools, vaccine-encoded adapted epitopes (AE) induced CD4+ T-cell responses less frequently than nonadapted epitopes (NAE). We also demonstrated that in a polyvalent vaccine, where both forms of the same epitope were encoded, AE were less immunogenic. NAE-specific CD4+ T cells had increased, albeit low, levels of interferon gamma (IFN-γ) cytokine production. Single-cell transcriptomic analyses showed that NAE-specific CD4+ T cells expressed interferon-related genes, while AE-specific CD4+ T cells resembled a Th2 phenotype. Importantly, the magnitude of NAE-specific CD4+ T-cell responses, but not that of AE-specific responses, was found to positively correlate with Env-specific antibodies in a vaccine efficacy trial. Together, these findings show that HLA-II-associated viral adaptation reduces CD4+ T-cell responses in HIV-1 vaccine recipients and suggest that vaccines encoding a significant number of AE may not provide optimal B-cell help for HIV-specific antibody production. IMPORTANCE Despite decades of research, an effective HIV-1 vaccine remains elusive. Vaccine strategies leading to the generation of broadly neutralizing antibodies are likely needed to provide the best opportunity of generating a protective immune response against HIV-1. Numerous studies have demonstrated that T-cell help is necessary for effective antibody generation. However, immunogen sequences from recent HIV-1 vaccine efficacy trials include CD4+ T-cell epitopes that have evidence of immune escape. Our study shows that these epitopes, termed adapted epitopes, elicit lower frequencies of CD4+ T-cell responses in recipients from multiple HIV-1 vaccine trials. Additionally, the counterparts to these epitopes, termed nonadapted epitopes, elicited CD4+ T-cell responses that correlated with Env-specific antibodies in one efficacy trial. These results suggest that vaccine-encoded adapted epitopes dampen CD4+ T-cell responses, potentially impacting both HIV-specific antibody production and efficacious vaccine efforts.- Published
- 2022
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44. Antibody dependent cell cytotoxicity is maintained by the unmutated common ancestor of 6F5, a Gp41 conformational epitope targeting antibody that utilizes heavy chain VH1-2.
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Wrotniak BH, Garrett M, Baron S, Sojar H, Shon A, Asiago-Reddy E, Yager J, Kalams S, Croix M, and Hicar MD
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- Antibodies, Monoclonal, Antibodies, Neutralizing, Antibody-Dependent Cell Cytotoxicity, Epitopes, HIV Antibodies, HIV Envelope Protein gp41 genetics, Humans, HIV Infections, HIV-1 genetics
- Abstract
In studies on monoclonal IgG antibodies (mAbs) from long-term non-progressors (LTNPs), our laboratory has previously described highly mutated Abs against a complex conformational epitope with contributions from both gp41 the N terminal and C terminal heptad repeat helices. Despite using the VH1-2 gene segment, known to contribute to some of the broadest neutralizing Abs against HIV, members of these Abs, termed group 76C Abs, did not exhibit broad neutralization. Because of the high number of mutations and use of VH1-2, our goal was to characterize the non-neutralizing functions of Abs of group 76C, to assess if targeting of the epitope correlates with LTNP, and to assess the maturation of these Abs by comparison to their predicted common ancestor. Serum competition assays showed group 76C Abs were enriched in LTNPs, in comparison to VRC-01. Specific group 76C clones 6F5 and 6F11, expressed as recombinant Abs, both have robust ADCC activity, despite their sequence disparity. Sequence analysis predicted the common ancestor of this clonal group would utilize the germline non-mutated variable gene. We produced a recombinant ancestor Ab (76Canc) with a heavy chain utilizing the germline variable gene sequence paired to the 6F5 light chain. Competition with group 76C recombinant Ab 6F5 confirms 76Canc binds HIV envelope constructs near the original group C epitope. 76Canc demonstrates comparable ADCC to 6F5 and 6F11 when using gp41 constructs of both clade B and clade C. The functional capability of Abs utilizing germline VH1-2 has implications for disease control and vaccine development., Competing Interests: Declaration of Competing Interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Mark Daniel Hicar reports financial support was provided by National Institutes of Health., (Copyright © 2022. Published by Elsevier Ltd.)
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- 2022
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45. Interleukin-17A is associated with flow-mediated dilation and interleukin-4 with carotid plaque in persons with HIV.
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Wanjalla CN, Temu TM, Mashayekhi M, Warren CM, Shepherd BE, Gangula R, Fuseini H, Bailin S, Gabriel CL, Gangula P, Madhur MS, Kalams S, Mallal SA, Harrison DG, Beckman JA, and Koethe JR
- Subjects
- Biomarkers, Cross-Sectional Studies, Cytokines, Dilatation, Humans, Immunity, Innate, Interleukin-17, Interleukin-4, Th17 Cells, Atherosclerosis complications, HIV Infections complications, Plaque, Atherosclerotic
- Abstract
Objective: Chronic inflammation contributes to the high burden of cardiovascular disease (CVD) in persons with HIV (PWH). HIV has broad effects on innate and adaptive immune cells, including innate lymphoid cells (ILCs) and CD4+ T-helper cells. At present, the relationship between CVD and plasma cytokines reflecting ILC/T-helper responses in PWH is not well defined. We investigated relationships between plasma cytokines and subclinical atherosclerosis., Design: A cross-sectional study., Methods: We recruited 70 PWH on a single antiretroviral regimen (efavirenz, teno- fovir, and emtricitabine) with at least 12 months of suppressed viremia and 30 HIVnegative controls. We quantified plasma cytokines and chemokines, including inter- feron-g, interleukin (IL)-4, IL-13, and IL-17A, markers of macrophage activation, and markers of endothelial activation using multiplex assays and ELISA. Cytokines were grouped using Ward's hierarchical clustering. Brachial artery flow-mediated dilation (FMD) and carotid plaque burden were determined using ultrasound. Multivariable linear regression and negative binomial regression analyses were used to assess the relationships of plasma biomarkers and endpoints adjusted for CVD risk factors., Results: We identified three distinct clusters in PWH, one containing Th1/Th2/ILC1/ ILC2 type cytokines, one with Th17/ILC3/macrophage-related cytokines, and a less specific third cluster. Lower FMD was associated with higher plasma IL-17A and macrophage inflammatory protein-1 a. In contrast, IL-4, a Th2/ILC2 type cytokine, was associated with carotid plaque. When HIV-negative controls were added to the models clustering was more diffuse, and these associations were attenuated or absent., Conclusion: Th17/ILC3 and Th2/ILC2-mediated immune mechanisms may have distinct roles in endothelial dysfunction and atherosclerotic plaque formation, respectively, in PWH., (Copyright © 2022 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2022
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46. Immune correlates analysis of the mRNA-1273 COVID-19 vaccine efficacy clinical trial.
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Gilbert PB, Montefiori DC, McDermott AB, Fong Y, Benkeser D, Deng W, Zhou H, Houchens CR, Martins K, Jayashankar L, Castellino F, Flach B, Lin BC, O'Connell S, McDanal C, Eaton A, Sarzotti-Kelsoe M, Lu Y, Yu C, Borate B, van der Laan LWP, Hejazi NS, Huynh C, Miller J, El Sahly HM, Baden LR, Baron M, De La Cruz L, Gay C, Kalams S, Kelley CF, Andrasik MP, Kublin JG, Corey L, Neuzil KM, Carpp LN, Pajon R, Follmann D, Donis RO, and Koup RA
- Subjects
- Adolescent, Adult, Aged, Antibodies, Neutralizing immunology, Antibodies, Viral immunology, Clinical Trials, Phase III as Topic, Female, Humans, Immunogenicity, Vaccine, Male, Middle Aged, Randomized Controlled Trials as Topic, Sensitivity and Specificity, Spike Glycoprotein, Coronavirus immunology, Young Adult, 2019-nCoV Vaccine mRNA-1273 immunology, Antibodies, Neutralizing blood, Antibodies, Viral blood, COVID-19 prevention & control, SARS-CoV-2 immunology, Vaccine Efficacy
- Abstract
In the coronavirus efficacy (COVE) phase 3 clinical trial, vaccine recipients were assessed for neutralizing and binding antibodies as correlates of risk for COVID-19 disease and as correlates of protection. These immune markers were measured at the time of second vaccination and 4 weeks later, with values reported in standardized World Health Organization international units. All markers were inversely associated with COVID-19 risk and directly associated with vaccine efficacy. Vaccine recipients with postvaccination 50% neutralization titers 10, 100, and 1000 had estimated vaccine efficacies of 78% (95% confidence interval, 54 to 89%), 91% (87 to 94%), and 96% (94 to 98%), respectively. These results help define immune marker correlates of protection and may guide approval decisions for messenger RNA (mRNA) COVID-19 vaccines and other COVID-19 vaccines.
- Published
- 2022
- Full Text
- View/download PDF
47. Immune Correlates Analysis of the mRNA-1273 COVID-19 Vaccine Efficacy Trial.
- Author
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Gilbert PB, Montefiori DC, McDermott A, Fong Y, Benkeser D, Deng W, Zhou H, Houchens CR, Martins K, Jayashankar L, Castellino F, Flach B, Lin BC, O'Connell S, McDanal C, Eaton A, Sarzotti-Kelsoe M, Lu Y, Yu C, Borate B, van der Laan LWP, Hejazi N, Huynh C, Miller J, El Sahly HM, Baden LR, Baron M, De La Cruz L, Gay C, Kalams S, Kelley CF, Kutner M, Andrasik MP, Kublin JG, Corey L, Neuzil KM, Carpp LN, Pajon R, Follmann D, Donis RO, and Koup RA
- Abstract
Background: In the Coronavirus Efficacy (COVE) trial, estimated mRNA-1273 vaccine efficacy against coronavirus disease-19 (COVID-19) was 94%. SARS-CoV-2 antibody measurements were assessed as correlates of COVID-19 risk and as correlates of protection., Methods: Through case-cohort sampling, participants were selected for measurement of four serum antibody markers at Day 1 (first dose), Day 29 (second dose), and Day 57: IgG binding antibodies (bAbs) to Spike, bAbs to Spike receptor-binding domain (RBD), and 50% and 80% inhibitory dilution pseudovirus neutralizing antibody titers calibrated to the WHO International Standard (cID50 and cID80). Participants with no evidence of previous SARS-CoV-2 infection were included. Cox regression assessed in vaccine recipients the association of each Day 29 or 57 serologic marker with COVID-19 through 126 or 100 days of follow-up, respectively, adjusting for risk factors., Results: Day 57 Spike IgG, RBD IgG, cID50, and cID80 neutralization levels were each inversely correlated with risk of COVID-19: hazard ratios 0.66 (95% CI 0.50, 0.88; p=0.005); 0.57 (0.40, 0.82; p=0.002); 0.42 (0.27, 0.65; p<0.001); 0.35 (0.20, 0.61; p<0.001) per 10-fold increase in marker level, respectively, multiplicity adjusted P-values 0.003-0.010. Results were similar for Day 29 markers (multiplicity adjusted P-values <0.001-0.003). For vaccine recipients with Day 57 reciprocal cID50 neutralization titers that were undetectable (<2.42), 100, or 1000, respectively, cumulative incidence of COVID-19 through 100 days post Day 57 was 0.030 (0.010, 0.093), 0.0056 (0.0039, 0.0080), and 0.0023 (0.0013, 0.0036). For vaccine recipients at these titer levels, respectively, vaccine efficacy was 50.8% (-51.2, 83.0%), 90.7% (86.7, 93.6%), and 96.1% (94.0, 97.8%). Causal mediation analysis estimated that the proportion of vaccine efficacy mediated through Day 29 cID50 titer was 68.5% (58.5, 78.4%)., Conclusions: Binding and neutralizing antibodies correlated with COVID-19 risk and vaccine efficacy and likely have utility in predicting mRNA-1273 vaccine efficacy against COVID-19., Trial Registration Number: COVE ClinicalTrials.gov number, NCT04470427.
- Published
- 2021
- Full Text
- View/download PDF
48. Intramuscular and Intradermal Electroporation of HIV-1 PENNVAX-GP ® DNA Vaccine and IL-12 Is Safe, Tolerable, Acceptable in Healthy Adults.
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Edupuganti S, C De Rosa S, Elizaga M, Lu Y, Han X, Huang Y, Swann E, Polakowski L, A Kalams S, Keefer M, Maenza J, C Wise M, Yan J, Morrow MP, Khan AS, Boyer JD, Humeau L, White S, Sardesai NY, Bagarazzi ML, Gilbert PB, Kublin JG, Corey L, Weiner DB, On Behalf Of The Hvtn Study Team, and The Niaid-Funded Hiv Vaccine Trials Network
- Abstract
Background: Several techniques are under investigation to improve the immunogenicity of HIV-1 DNA vaccine candidates. DNA vaccines are advantageous due to their ease of design, expression of multiple antigens, and safety., Methods: The HVTN 098 trial assessed the PENNVAX
® -GP DNA vaccine (encoding HIV env , gag , pol ) administered with or without plasmid IL-12 at 0-, 1-, 3-, and 6-month timepoints via intradermal (ID) or intramuscular (IM) electroporation (EP) in healthy, adult participants. We report on safety, tolerability, and acceptability., Results: HVTN 098 enrolled 94 participants: 85 received PENNVAX® -GP and nine received placebo. Visual analog scale (VAS) pain scores immediately after each vaccination were lower in the ID/EP than in the IM/EP group (medians 4.1-4.6 vs. 6-6.5, p < 0.01). IM/EP participants reported greater pain and/or tenderness at the injection site. Most ID/EP participants had skin lesions such as scabs/eschars, scars, and pigmentation changes, which resolved within 6 months in 51% of participants (24/55). Eighty-two percent of IM/EP and 92% of ID/EP participant survey responses showed acceptable levels of discomfort., Conclusions: ID/EP and IM/EP are distinct experiences; however, HIV-1 DNA vaccination by either route was safe, tolerable and acceptable by most study participants.- Published
- 2020
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49. Evidence of CD4 + T cell-mediated immune pressure on the Hepatitis C virus genome.
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Lucas M, Deshpande P, James I, Rauch A, Pfafferott K, Gaylard E, Merani S, Plauzolles A, Lucas A, McDonnell W, Kalams S, Pilkinton M, Chastain C, Barnett L, Prosser A, Mallal S, Fitzmaurice K, Drummer H, Ansari MA, Pedergnana V, Barnes E, John M, Kelleher D, Klenerman P, and Gaudieri S
- Subjects
- Alleles, CD4-Positive T-Lymphocytes virology, CD8-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes virology, Cohort Studies, Epitopes, T-Lymphocyte genetics, Epitopes, T-Lymphocyte immunology, Gene Expression Regulation, Genotype, HLA-DQ beta-Chains genetics, HLA-DQ beta-Chains immunology, HLA-DRB1 Chains genetics, HLA-DRB1 Chains immunology, Hepacivirus immunology, Hepatitis C, Chronic immunology, Hepatitis C, Chronic virology, Host-Pathogen Interactions immunology, Humans, Mutation, Viral Nonstructural Proteins immunology, CD4-Positive T-Lymphocytes immunology, Genome, Viral, Hepacivirus genetics, Hepatitis C, Chronic genetics, Host-Pathogen Interactions genetics, Viral Nonstructural Proteins genetics
- Abstract
Hepatitis C virus (HCV)-specific T cell responses are critical for immune control of infection. Viral adaptation to these responses, via mutations within regions of the virus targeted by CD8
+ T cells, is associated with viral persistence. However, identifying viral adaptation to HCV-specific CD4+ T cell responses has been difficult although key to understanding anti-HCV immunity. In this context, HCV sequence and host genotype from a single source HCV genotype 1B cohort (n = 63) were analyzed to identify viral changes associated with specific human leucocyte antigen (HLA) class II alleles, as these variable host molecules determine the set of viral peptides presented to CD4+ T cells. Eight sites across the HCV genome were associated with HLA class II alleles implicated in infection outcome in this cohort (p ≤ 0.01; Fisher's exact test). We extended this analysis to chronic HCV infection (n = 351) for the common genotypes 1A and 3A. Variation at 38 sites across the HCV genome were associated with specific HLA class II alleles with no overlap between genotypes, suggestive of genotype-specific T cell targets, which has important implications for vaccine design. Here we show evidence of HCV adaptation to HLA class II-restricted CD4+ T cell pressure across the HCV genome in chronic HCV infection without a priori knowledge of CD4+ T cell epitopes.- Published
- 2018
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50. Modification of the Association Between T-Cell Immune Responses and Human Immunodeficiency Virus Type 1 Infection Risk by Vaccine-Induced Antibody Responses in the HVTN 505 Trial.
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Fong Y, Shen X, Ashley VC, Deal A, Seaton KE, Yu C, Grant SP, Ferrari G, deCamp AC, Bailer RT, Koup RA, Montefiori D, Haynes BF, Sarzotti-Kelsoe M, Graham BS, Carpp LN, Hammer SM, Sobieszczyk M, Karuna S, Swann E, DeJesus E, Mulligan M, Frank I, Buchbinder S, Novak RM, McElrath MJ, Kalams S, Keefer M, Frahm NA, Janes HE, Gilbert PB, and Tomaras GD
- Subjects
- Antibody Formation immunology, HIV Antibodies blood, HIV-1 immunology, Humans, Immunoglobulin G blood, Immunoglobulin G classification, Male, AIDS Vaccines immunology, CD8-Positive T-Lymphocytes physiology, HIV Infections prevention & control
- Abstract
Background: HVTN 505 was a human immunodeficiency virus type 1 (HIV-1) preventive vaccine efficacy trial of a DNA/recombinant adenovirus serotype 5 (rAd5) vaccine regimen. We assessed antibody responses measured 1 month after final vaccination (month 7) as correlates of HIV-1 acquisition risk., Methods: Binding antibody responses were quantified in serum samples from 25 primary endpoint vaccine cases (diagnosed with HIV-1 infection between month 7 and month 24) and 125 randomly sampled frequency-matched vaccine controls (HIV-1 negative at month 24). We prespecified for a primary analysis tier 6 antibody response biomarkers that measure immunoglobulin G (IgG) and immunoglobulin A (IgA) binding to Env proteins and 2 previously assessed T-cell response biomarkers., Results: Envelope-specific IgG responses were significantly correlated with decreased HIV-1 risk. Moreover, the interaction of IgG responses and Env-specific CD8+ T-cell polyfunctionality score had a highly significant association with HIV-1 risk after adjustment for multiple comparisons., Conclusions: Vaccinees with higher levels of Env IgG have significantly decreased HIV-1 risk when CD8+ T-cell responses are low. Moreover, vaccinees with high CD8+ T-cell responses generally have low risk, and those with low CD8+ T-cell and low Env antibody responses have high risk. These findings suggest the critical importance of inducing a robust IgG Env response when the CD8+ T-cell response is low.
- Published
- 2018
- Full Text
- View/download PDF
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