105 results on '"Kanber B"'
Search Results
2. Acute corticospinal tract diffusion tensor imaging predicts 6-month functional outcome after intracerebral haemorrhage
- Author
-
Schwarz, G., Kanber, B., Prados, F., Browning, S., Simister, R., Jäger, R., Ambler, G., Wheeler-Kingshott, C. A. M. Gandini, and Werring, David J.
- Published
- 2022
- Full Text
- View/download PDF
3. Microscopic fractional anisotropy outperforms multiple sclerosis lesion assessment and clinical outcome associations over standard fractional anisotropy tensor.
- Author
-
Vivó, F., Solana, E., Calvi, A., Lopez‐Soley, E., Reid, L. B., Pascual‐Diaz, S., Garrido, C., Planas‐Tardido, L., Cabrera‐Maqueda, J. M., Alba‐Arbalat, S., Sepulveda, M., Blanco, Y., Kanber, B., Prados, F., Saiz, A., Llufriu, S., and Martinez‐Heras, E.
- Subjects
DIFFUSION tensor imaging ,MULTIPLE sclerosis ,MAGNETIC resonance imaging ,DIFFUSION magnetic resonance imaging ,ANISOTROPY - Abstract
We aimed to compare the ability of diffusion tensor imaging and multi‐compartment spherical mean technique to detect focal tissue damage and in distinguishing between different connectivity patterns associated with varying clinical outcomes in multiple sclerosis (MS). Seventy‐six people diagnosed with MS were scanned using a SIEMENS Prisma Fit 3T magnetic resonance imaging (MRI), employing both conventional (T1w and fluid‐attenuated inversion recovery) and advanced diffusion MRI sequences from which fractional anisotropy (FA) and microscopic FA (μFA) maps were generated. Using automated fiber quantification (AFQ), we assessed diffusion profiles across multiple white matter (WM) pathways to measure the sensitivity of anisotropy diffusion metrics in detecting localized tissue damage. In parallel, we analyzed structural brain connectivity in a specific patient cohort to fully grasp its relationships with cognitive and physical clinical outcomes. This evaluation comprehensively considered different patient categories, including cognitively preserved (CP), mild cognitive deficits (MCD), and cognitively impaired (CI) for cognitive assessment, as well as groups distinguished by physical impact: those with mild disability (Expanded Disability Status Scale [EDSS] <=3) and those with moderate–severe disability (EDSS >3). In our initial objective, we employed Ridge regression to forecast the presence of focal MS lesions, comparing the performance of μFA and FA. μFA exhibited a stronger association with tissue damage and a higher predictive precision for focal MS lesions across the tracts, achieving an R‐squared value of.57, significantly outperforming the R‐squared value of.24 for FA (p‐value <.001). In structural connectivity, μFA exhibited more pronounced differences than FA in response to alteration in both cognitive and physical clinical scores in terms of effect size and number of connections. Regarding cognitive groups, FA differences between CP and MCD groups were limited to 0.5% of connections, mainly around the thalamus, while μFA revealed changes in 2.5% of connections. In the CP and CI group comparison, which have noticeable cognitive differences, the disparity was 5.6% for FA values and 32.5% for μFA. Similarly, μFA outperformed FA in detecting WM changes between the MCD and CI groups, with 5% versus 0.3% of connections, respectively. When analyzing structural connectivity between physical disability groups, μFA still demonstrated superior performance over FA, disclosing a 2.1% difference in connectivity between regions closely associated with physical disability in MS. In contrast, FA spotted a few regions, comprising only 0.6% of total connections. In summary, μFA emerged as a more effective tool than FA in predicting MS lesions and identifying structural changes across patients with different degrees of cognitive and global disability, offering deeper insights into the complexities of MS‐related impairments. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
4. Single-subject structural cortical networks in clinically isolated syndrome
- Author
-
Collorone S., Prados F., Hagens M. H. J., Tur C., Kanber B., Sudre C. H., Lukas C., Gasperini C., Oreja-Guevara C., Andelova M., Ciccarelli O., Wattjes M. P., Ourselin S., Altmann D. R., Tijms B. M., Barkhof F., Toosy A. T, Magnims SDtudy Group, Filippi M, Rocca MA, Neurology, Amsterdam Neuroscience - Neuroinfection & -inflammation, Radiology and nuclear medicine, Collorone, S., Prados, F., Hagens, M. H. J., Tur, C., Kanber, B., Sudre, C. H., Lukas, C., Gasperini, C., Oreja-Guevara, C., Andelova, M., Ciccarelli, O., Wattjes, M. P., Ourselin, S., Altmann, D. R., Tijms, B. M., Barkhof, F., Toosy A., T, Magnims SDtudy, Group, Filippi, M, and Rocca, Ma
- Subjects
graph theory ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Magnetic resonance imaging ,0302 clinical medicine ,Cognition ,Neural Pathways ,medicine ,Humans ,Prospective Studies ,structural cortical networks ,Clinically isolated syndrome ,medicine.diagnostic_test ,business.industry ,Multiple sclerosis ,Brain ,gray matter ,medicine.disease ,Magnetic Resonance Imaging ,multicenter study ,Neurology ,Multicenter study ,clinically isolated syndrome ,multiple sclerosi ,Neurology (clinical) ,business ,Neuroscience ,030217 neurology & neurosurgery ,Demyelinating Diseases - Abstract
Background: Structural cortical networks (SCNs) represent patterns of coordinated morphological modifications in cortical areas, and they present the advantage of being extracted from previously acquired clinical magnetic resonance imaging (MRI) scans. SCNs have shown pathophysiological changes in many brain disorders, including multiple sclerosis. Objective: To investigate alterations of SCNs at the individual level in patients with clinically isolated syndrome (CIS), thereby assessing their clinical relevance. Methods: We analyzed baseline data collected in a prospective multicenter (MAGNIMS) study. CIS patients ( n = 60) and healthy controls ( n = 38) underwent high-resolution 3T MRI. Measures of disability and cognitive processing were obtained for patients. Single-subject SCNs were extracted from brain 3D-T1 weighted sequences; global and local network parameters were computed. Results: Compared to healthy controls, CIS patients showed altered small-world topology, an efficient network organization combining dense local clustering with relatively few long-distance connections. These disruptions were worse for patients with higher lesion load and worse cognitive processing speed. Alterations of centrality measures and clustering of connections were observed in specific cortical areas in CIS patients when compared with healthy controls. Conclusion: Our study indicates that SCNs can be used to demonstrate clinically relevant alterations of connectivity in CIS.
- Published
- 2019
- Full Text
- View/download PDF
5. An opportunity for men with positive prostate mpMRI studies to safely avoid biopsy – Results from the INNOVATE Study
- Author
-
Singh, S., primary, Rogers, H., additional, Kanber, B., additional, Clemente, J., additional, Pye, H., additional, Grey, A., additional, Dineen, E., additional, Shaw, G., additional, Haider, A., additional, Freeman, A., additional, Atkinson, D., additional, Moore, C.M., additional, Whitaker, H.C., additional, Alexander, D.C., additional, Panagiotaki, E., additional, and Punwani, S., additional
- Published
- 2021
- Full Text
- View/download PDF
6. Colorectal hepatic metastases: quantitative measurements using single-shot echo-planar diffusion-weighted MR imaging
- Author
-
Koh, D. M., Scurr, E., Collins, D. J., Pirgon, A., Kanber, B., Karanjia, N., Brown, G., Leach, M. O., and Husband, J. E.
- Published
- 2006
- Full Text
- View/download PDF
7. Finite Element Analysis of Plate Bending Problems Using Transition Plate Elements
- Author
-
Kanber, B., primary and Bozkurt, O.Y., additional
- Published
- 2005
- Full Text
- View/download PDF
8. P0425 - An opportunity for men with positive prostate mpMRI studies to safely avoid biopsy – Results from the INNOVATE Study
- Author
-
Singh, S., Rogers, H., Kanber, B., Clemente, J., Pye, H., Grey, A., Dineen, E., Shaw, G., Haider, A., Freeman, A., Atkinson, D., Moore, C.M., Whitaker, H.C., Alexander, D.C., Panagiotaki, E., and Punwani, S.
- Published
- 2021
- Full Text
- View/download PDF
9. P1 NOVEL ULTRASOUND IMAGING TECHNIQUES HELP CHARACTERIZE AND IDENTIFY THE VULNERABLE PLAQUE
- Author
-
Al-mutairi, F, primary, Kanber, B, additional, Garrard, J, additional, Hartshorne, T C, additional, Robinson, T G, additional, Chung, E, additional, and Ramnarine, K V, additional
- Published
- 2018
- Full Text
- View/download PDF
10. Letter to the Editor: Shear Wave Elastography May Be Superior to Grayscale Median for the Identification of Carotid Plaque Vulnerability: A Comparison with Histology--Authors response
- Author
-
Kv, Ramnarine, James Garrard, Ummur P, Nduwayo S, Kanber B, Tc, Hartshorne, Kp, West, Moore D, and Tg, Robinson
- Subjects
Image Interpretation, Computer-Assisted ,Elasticity Imaging Techniques ,Humans ,Image Enhancement - Published
- 2016
11. On the Usage of Tetrahedral Background Cells in Nodal Integration of RPIM for 3D Elasto-Static Problems
- Author
-
Yavuz, M. M., primary and Kanber, B., additional
- Published
- 2015
- Full Text
- View/download PDF
12. Shear Wave Elastography May Be Superior to Greyscale Median for the Identification of Carotid Plaque Vulnerability: A Comparison with Histology
- Author
-
Garrard, J., additional, Ummur, P., additional, Nduwayo, S., additional, Kanber, B., additional, Hartshorne, T., additional, West, K., additional, Moore, D., additional, Robinson, T., additional, and Ramnarine, K., additional
- Published
- 2015
- Full Text
- View/download PDF
13. OBJECT-ORIENTED PROGRAMMING IN MESHFREE ANALYSIS OF ELASTOSTATIC PROBLEMS
- Author
-
Kanber, B., primary and Yavuz, M.M., additional
- Published
- 2015
- Full Text
- View/download PDF
14. Kamalı Bağlantıların Sonlu Eleman Yöntemiyle Analizi
- Author
-
Kanber, B. and Yavuz, M. M.
- Abstract
Konferans Bildirisi -- Teorik ve Uygulamalı Mekanik Türk Milli Komitesi, 2010, Conference Paper -- Theoretical and Applied Mechanical Turkish National Committee, 2010, Bu çalışmada, kamalı baglantıları sonlu elemanlar yöntemi kullanılarak gerilme analizleri yapılmıştır. Analizde, sonlu eleman çözümleri için ANSYS paket programı kullanılmıştır. Bu amaçla, ANSYS programmda mil, disk ve kama modelleri oluşturulmuş ve mil ile disk kama baglantısıyla birbirine baglanmıştır. Modollemede, mil üzerinde dört simetrik noktadan kuvvet çiftleri uygulanarak tork oluşturulmuş ve disk kenarlarmdan sabitlenmiştir. Kullanllan parça malzemeleri, lineer elastik izotropik oldugu kabul ve çelikten yapıldlül varsayılmıştır (E=200 Gpa, Uygulanan tork etkisinde, parçalar üzerinde, farkll yogunluklarda gerilme daglımları gözlemlenmiştir. Yapllan analizlerde, parçalar arası sürtünme katsayısının kama kenar profilinde gerilme dağılımı üzerine etkileri araştırılmıştır. Ayrıca kama kenar profilinin yine bu bölgedeki gerilme dağılımı üzerine etkileri arastırılmıştır. Yapılan tüm çözümlemeler, Fessler ve arkadaşlarının [4] yaptıkları fotoelastik deney sonuçlaryla kıyaslanmıştır., In this study, stress analysis of keyed connections is investigated by using finite element method. In the analysis, ANSYS package software is used for the finite element solutions. For this aim, shaft, hub and key are modelled in ANSYS software and hub and shaft are connected together with a key. In the finite element model, force couples are applied to obtain torque from four symmetric points on the shaft and the hub is fixed from circumferential sides. All part materials are accepted linear elastic isotropic and assumed they are made from steel (E=200 Gpa, Under the action of applied torque, different stress distributions are observed in the contact surfaces. In the analysis, the effect of friction coefficients between parts on the effect of stress distributions is investigated. The eftëct of key edge profile on the stress distributions on this area is also investigated. All obtained results are compared with Fessler and Appavoo [4] photoelatic experimental results.
- Published
- 2010
15. Çoklu Civatalıbağlantıların Kesme Ve Eğme Yükleri Altında İncelenmesi
- Author
-
Filiz, İ. H. and Kanber, B.
- Abstract
Konferans Bildirisi -- Teorik ve Uygulamalı Mekanik Türk Milli Komitesi, 2008, Conference Paper -- Theoretical and Applied Mechanical Turkish National Committee, 2008, Bu çalışmada, çoklu cıvatalı bağlantıların kesme ve eğme yükleri altındaki davranışları incelenmiştir. Bu amaçla, 6 cıvatalı simetrik bir bağlantı ele alınmış, kesme ve eğme yüklerine maruz bırakılmıştır. Bilinen denge denklemleri ve sonlu elemanlar metodu kullanılarak iki farklı çözüm yapılmıştır. Yapılan analitik çözümlerde cıvataların sıktığı elemanlar rijit varsayılmış ve cıvata deformasyonlarına etkisi sıfır kabul edilmiştir. Sonlu elemanlar çözümlerinde ise iki farklı çözüm yapılmıştır. Birincisinde analitik çözümlerde olduğu gibi cıvataların sıktığı tüm elemanlar rijit kabul edilmiş ve analitik çözümlerle uyumuna bakılmıştır. İkinci çözümde ise cıvatalar ve bağlanan elemanlar elastik kabul edilmiş ve önceki çözümlerle farkları araştırılmıştır. Böylece analitik çözümlerdeki rijit varsayımının sonuçlar üzerindeki etkisi gösterilmiştir. Sonlu elemanlar çözümlerinde ayrıca bağlantılardaki önyükleme etkisi araştırılmıştır., In this study, bolted joints are analysed under the action of shear and bending forces. For this aim, a symmetric bolted joint including six bolts is loaded by shear and bending forces. It is solved by using well-known equilibrium equations and finite element method. In the analytical solution, the members are assumed as rigid and their effects in bolt deformations are assumed to be zero. In the finite element solutions, two different solutions have been carried out. In the first one, the members are assumed rigid as in the analytical solution. The results are compared with the results obtained from analytical solution. In the second solution, connected members are considered as elastic. The results are again compared with previous results. The preload effect has also been investigated in the finite element solutions.
- Published
- 2008
16. A diagonal offset algorithm for the polynomial point interpolation method
- Author
-
Kanber, B., primary and Bozkurt, O. Y., additional
- Published
- 2007
- Full Text
- View/download PDF
17. A Novel Ultrasound-Based Carotid Plaque Risk Index Associated with the Presence of Cerebrovascular Symptoms.
- Author
-
Kanber, B., Hartshorne, T. C., Horsfield, M. A., Naylor, A. R., Robinson, T. G., and Ramnarine, K. V.
- Published
- 2015
- Full Text
- View/download PDF
18. ShearWave Elastography May Be Superior to Greyscale Median for the Identification of Carotid Plaque Vulnerability: A Comparison with Histology.
- Author
-
Garrard, J. W., Ummur, P., Nduwayo, S., Kanber, B., Hartshorne, T. C., West, K. P., Moore, D., Robinson, T. G., and Ramnarine, K. V.
- Published
- 2015
- Full Text
- View/download PDF
19. Assessing the performance of vessel wall tracking algorithms: the importance of the test phantom
- Author
-
Ramnarine, K V, primary, Kanber, B, additional, and Panerai, R B, additional
- Published
- 2004
- Full Text
- View/download PDF
20. A diagonal offset algorithm for the polynomial point interpolation method.
- Author
-
Kanber, B. and Bozkurt, O. Y.
- Subjects
- *
INTERPOLATION , *MATRICES (Mathematics) , *ALGORITHMS , *STRAINS & stresses (Mechanics) , *POLYNOMIALS , *APPROXIMATION theory - Abstract
A diagonal offset algorithm is presented to overcome the singular moment matrix problem in the polynomial point interpolation method. The value of terms in the diagonal line of moment matrix is changed with different offsets. The effects of the offsets on the Kronecker delta function and partition of unity properties are investigated and an optimum offset range is proposed. The algorithm is validated solving some patch tests and various elasticity problems in 2-D domain. Their results demonstrate that the proposed algorithm is very easy to implement and completely solves the singular moment matrix problem. The accuracy of the method with proposed algorithm is investigated for regular and irregular local domains. Copyright © 2007 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
21. Disrupted core-periphery organization of multimodal brain networks in multiple sclerosis
- Author
-
Pontillo, G., Prados, F., Wink, A. M., Kanber, B., Bisecco, A., Broeders, T. A. A., Brunetti, A., Cagol, A., Calabrese, M., Marco Castellaro, Cocozza, S., Cortese, R., Stefano, N., Douw, L., Enzinger, C., Filippi, M., Gallo, A., Gonzalez-Escamilla, G., Granziera, C., Groppa, S., Harbo, H. F., Hogestol, E. A., Llufriu, S., Lorenzini, L., Martinez-Heras, E., Messina, S., Moccia, M., Nygaard, G. O., Palace, J., Petracca, M., Pinter, D., Strijbis, E., Toosy, A., Valsasina, P., Vrenken, H., Ciccarelli, O., Cole, J. H., Schoonheim, M., and Barkhof, F.
22. Letter to the Editor: Shear Wave Elastography May Be Superior to Grayscale Median for the Identification of Carotid Plaque Vulnerability: A Comparison with Histology.
- Author
-
Ramnarine, K. V., Garrard, J. W., Ummur, P., Nduwayo, S., Kanber, B., Hartshorne, T. C., West, K. P., Moore, D., and Robinson, T. G.
- Published
- 2016
23. Patterns of inflammation, microstructural alterations, and sodium accumulation define multiple sclerosis subtypes after 15 years from onset
- Author
-
Antonio Ricciardi, Francesco Grussu, Baris Kanber, Ferran Prados, Marios C. Yiannakas, Bhavana S. Solanky, Frank Riemer, Xavier Golay, Wallace Brownlee, Olga Ciccarelli, Daniel C. Alexander, Claudia A. M. Gandini Wheeler-Kingshott, Institut Català de la Salut, [Ricciardi A, Yiannakas MC, Solanky BS] NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, United Kingdom. [Grussu F] NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, United Kingdom. Radiomics Group, Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain. [Kanber B] NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, United Kingdom. Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, United Kingdom. [Prados F] NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, London, United Kingdom. Centre for Medical Image Computing, Department of Medical Physics and Biomedical Engineering, University College London, London, United Kingdom. eHealth Center, Universitat Oberta de Catalunya, Barcelona, Spain, and Vall d'Hebron Barcelona Hospital Campus
- Subjects
Mathematical Concepts::Algorithms::Artificial Intelligence::Machine Learning [PHENOMENA AND PROCESSES] ,Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Tomography::Magnetic Resonance Imaging [ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT] ,Aprenentatge automàtic ,enfermedades del sistema nervioso::enfermedades autoinmunitarias del sistema nervioso::enfermedades autoinmunes desmielinizantes del SNC::esclerosis múltiple [ENFERMEDADES] ,Biomedical Engineering ,Neuroscience (miscellaneous) ,conceptos matemáticos::algoritmos::inteligencia artificial::aprendizaje automático [FENÓMENOS Y PROCESOS] ,Nervous System Diseases::Autoimmune Diseases of the Nervous System::Demyelinating Autoimmune Diseases, CNS::Multiple Sclerosis [DISEASES] ,diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::tomografía::imagen por resonancia magnética [TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS] ,Esclerosi múltiple - Imatgeria per ressonància magnètica ,Computer Science Applications - Abstract
MRI; Machine learning; Multiple sclerosis Ressonància magnètica; Aprenentatge automàtic; Esclerosi múltiple Resonancia magnética; Aprendizaje automático; Esclerosis múltiple Introduction: Conventional MRI is routinely used for the characterization of pathological changes in multiple sclerosis (MS), but due to its lack of specificity is unable to provide accurate prognoses, explain disease heterogeneity and reconcile the gap between observed clinical symptoms and radiological evidence. Quantitative MRI provides measures of physiological abnormalities, otherwise invisible to conventional MRI, that correlate with MS severity. Analyzing quantitative MRI measures through machine learning techniques has been shown to improve the understanding of the underlying disease by better delineating its alteration patterns. Methods: In this retrospective study, a cohort of healthy controls (HC) and MS patients with different subtypes, followed up 15 years from clinically isolated syndrome (CIS), was analyzed to produce a multi-modal set of quantitative MRI features encompassing relaxometry, microstructure, sodium ion concentration, and tissue volumetry. Random forest classifiers were used to train a model able to discriminate between HC, CIS, relapsing remitting (RR) and secondary progressive (SP) MS patients based on these features and, for each classification task, to identify the relative contribution of each MRI-derived tissue property to the classification task itself. Results and discussion: Average classification accuracy scores of 99 and 95% were obtained when discriminating HC and CIS vs. SP, respectively; 82 and 83% for HC and CIS vs. RR; 76% for RR vs. SP, and 79% for HC vs. CIS. Different patterns of alterations were observed for each classification task, offering key insights in the understanding of MS phenotypes pathophysiology: atrophy and relaxometry emerged particularly in the classification of HC and CIS vs. MS, relaxometry within lesions in RR vs. SP, sodium ion concentration in HC vs. CIS, and microstructural alterations were involved across all tasks. This project has received funding under the European Union's Horizon 2020 Research and Innovation Programme under grant agreement No. 634541. FG received the support of a fellowship from “la Caixa” Foundation (ID 100010434). The fellowship code is “LCF/BQ/PR22/11920010”. FG has also received support from the Beatriu de Pinós (2020 BP 00117) programme, funded by the Secretary of Universities and Research (Government of Catalonia). BK, FP, and OC are supported by the National Institute of Health Research Biomedical Research Centre at UCL and UCLH. EPSRC grants EP/M020533/1 and EP/J020990/01, MRC MR/T046422/1 and MR/T046473/1, Wellcome Trust award 221915/Z/20/Z, and the NIHR UCLH BRC support DCA's work in this area. CGWK also receives funding from Horizon 2020 [Research and Innovation Action Grants Human Brain Project 945539 (SGA3)], BRC (#BRC704/CAP/CGW), MRC (#MR/S026088/1), and Ataxia UK.
- Published
- 2023
24. Comparison of Neurite Orientation Dispersion and Density Imaging and Two-Compartment Spherical Mean Technique Parameter Maps in Multiple Sclerosis
- Author
-
Daniel Johnson, Antonio Ricciardi, Wallace Brownlee, Baris Kanber, Ferran Prados, Sara Collorone, Enrico Kaden, Ahmed Toosy, Daniel C. Alexander, Claudia A. M. Gandini Wheeler-Kingshott, Olga Ciccarelli, Francesco Grussu, Institut Català de la Salut, [Johnson D] Department of Neuroinflammation, Faculty of Brain Sciences, Queen Square Multiple Sclerosis (MS) Centre, University College London (UCL) Queen Square Institute of Neurology, University College London, London, United Kingdom. Addenbrooke's Hospital, Cambridge, United Kingdom. [Ricciardi A, Kanber B] Department of Neuroinflammation, Faculty of Brain Sciences, Queen Square Multiple Sclerosis (MS) Centre, University College London (UCL) Queen Square Institute of Neurology, University College London, London, United Kingdom. Department of Medical Physics and Biomedical Engineering, Centre for Medical Image Computing, University College London, London, United Kingdom. [Brownlee W, Collorone S] Department of Neuroinflammation, Faculty of Brain Sciences, Queen Square Multiple Sclerosis (MS) Centre, University College London (UCL) Queen Square Institute of Neurology, University College London, London, United Kingdom. [Prados F] Department of Neuroinflammation, Faculty of Brain Sciences, Queen Square Multiple Sclerosis (MS) Centre, University College London (UCL) Queen Square Institute of Neurology, University College London, London, United Kingdom. Department of Medical Physics and Biomedical Engineering, Centre for Medical Image Computing, University College London, London, United Kingdom. e-Health Centre, Universitat Oberta de Catalunya, Barcelona, Spain. [Grussu F] Department of Neuroinflammation, Faculty of Brain Sciences, Queen Square Multiple Sclerosis (MS) Centre, University College London (UCL) Queen Square Institute of Neurology, University College London, London, United Kingdom. Radiomics Group, Vall d'Hebron Institute of Oncology (VHIO), Barcelona, Spain, Vall d'Hebron Barcelona Hospital Campus, UCL - SSS/IREC/SLUC - Pôle St.-Luc, UCL - (SLuc) Service de chirurgie et transplantation abdominale, and UCL - (SLuc) Centre du cancer
- Subjects
Other subheadings::/methods [Other subheadings] ,microstructure ,multiple sclerosis ,030218 nuclear medicine & medical imaging ,Spherical mean ,Esclerosi múltiple - Imatgeria ,diffusion MRI ,White matter ,03 medical and health sciences ,0302 clinical medicine ,Nuclear magnetic resonance ,Otros calificadores::/métodos [Otros calificadores] ,Fractional anisotropy ,medicine ,Statistical dispersion ,RC346-429 ,10. No inequality ,Other subheadings::Other subheadings::/diagnostic imaging [Other subheadings] ,Original Research ,Mathematics ,Expanded Disability Status Scale ,spherical mean technique ,Orientation (computer vision) ,Multiple sclerosis ,Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Tomography::Magnetic Resonance Imaging::Diffusion Magnetic Resonance Imaging [ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT] ,Nervous System Diseases::Autoimmune Diseases of the Nervous System::Demyelinating Autoimmune Diseases, CNS::Multiple Sclerosis [DISEASES] ,Otros calificadores::Otros calificadores::/diagnóstico por imagen [Otros calificadores] ,MNI space ,medicine.disease ,3. Good health ,medicine.anatomical_structure ,Neurology ,enfermedades del sistema nervioso::enfermedades autoinmunitarias del sistema nervioso::enfermedades autoinmunes desmielinizantes del SNC::esclerosis múltiple [ENFERMEDADES] ,Imatgeria per ressonància magnètica ,diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::tomografía::imagen por resonancia magnética::imagen de resonancia magnética de difusión [TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS] ,Neurology. Diseases of the nervous system ,Neurology (clinical) ,neurite orientation dispersion and density imaging ,030217 neurology & neurosurgery ,Diffusion MRI - Abstract
Microestructura; Esclerosi múltiple; Tècnica de mitjana esfèrica Microestructura; Esclerosis múltiple; Técnica de la media esférica Microstructure; Multiple sclerosis; Spherical mean technique Background: Neurite orientation dispersion and density imaging (NODDI) and the spherical mean technique (SMT) are diffusion MRI methods providing metrics with sensitivity to similar characteristics of white matter microstructure. There has been limited comparison of changes in NODDI and SMT parameters due to multiple sclerosis (MS) pathology in clinical settings. Purpose: To compare group-wise differences between healthy controls and MS patients in NODDI and SMT metrics, investigating associations with disability and correlations with diffusion tensor imaging (DTI) metrics. Methods: Sixty three relapsing-remitting MS patients were compared to 28 healthy controls. NODDI and SMT metrics corresponding to intracellular volume fraction (vin), orientation dispersion (ODI and ODE), diffusivity (D) (SMT only) and isotropic volume fraction (viso) (NODDI only) were calculated from diffusion MRI data, alongside DTI metrics (fractional anisotropy, FA; axial/mean/radial diffusivity, AD/MD/RD). Correlations between all pairs of MRI metrics were calculated in normal-appearing white matter (NAWM). Associations with expanded disability status scale (EDSS), controlling for age and gender, were evaluated. Patient-control differences were assessed voxel-by-voxel in MNI space controlling for age and gender at the 5% significance level, correcting for multiple comparisons. Spatial overlap of areas showing significant differences were compared using Dice coefficients. Results: NODDI and SMT show significant associations with EDSS (standardised beta coefficient −0.34 in NAWM and −0.37 in lesions for NODDI vin; 0.38 and −0.31 for SMT ODE and vin in lesions; p < 0.05). Significant correlations in NAWM are observed between DTI and NODDI/SMT metrics. NODDI vin and SMT vin strongly correlated (r = 0.72, p < 0.05), likewise NODDI ODI and SMT ODE (r = −0.80, p < 0.05). All DTI, NODDI and SMT metrics detect widespread differences between patients and controls in NAWM (12.57% and 11.90% of MNI brain mask for SMT and NODDI vin, Dice overlap of 0.42). Data Conclusion: SMT and NODDI detect significant differences in white matter microstructure between MS patients and controls, concurring on the direction of these changes, providing consistent descriptors of tissue microstructure that correlate with disability and show alterations beyond focal damage. Our study suggests that NODDI and SMT may play a role in monitoring MS in clinical trials and practice. This study has received funding under the European Union's Horizon 2020 research and innovation programme under grant agreement No. 634541 (CDS-QuaMRI) and 666992. This study has also received support from the Engineering and Physical Sciences Research Council (EPSRC R006032/1, M020533/1, G007748, I027084, N018702), Spinal Research (UK), Wings for Life (Austria), Craig H. Neilsen Foundation (USA) for INSPIRED and UK Multiple Sclerosis Society (grants 892/08 and 77/2017). This study was supported by the National Institute for Health Research University College London Hospitals Biomedical Research Centre. FP was supported by a Guarantors of Brain post-doctoral non-clinical fellowship. AT was supported by an MRC grant (MR/S026088/1). EK was supported from the NIHR Great Ormond Street Hospital Biomedical Research Centre. FG was currently supported by the investigator-initiated PREdICT study at the Vall d'Hebron Institute of Oncology (Barcelona), funded by AstraZeneca and CRIS Cancer Foundation. AstraZeneca was not involved in the study design, collection, analysis, interpretation of data, the writing of this article or the decision to submit it for publication.
- Published
- 2021
- Full Text
- View/download PDF
25. Spatial patterns of brain lesions assessed through covariance estimations of lesional voxels in multiple Sclerosis: The SPACE-MS technique
- Author
-
Carmen Tur, Francesco Grussu, Ferran Prados, Olga Ciccarelli, Declan T. Chard, Floriana De Angelis, Thalis Charalambous, Arman Eshaghi, Alan J. Thompson, Alberto Calvi, Claudia A. M. Wheeler-Kingshott, Jeremy Chataway, Baris Kanber, Rosa Cortese, University College London, Vall d¿Hebron Institute of Research, Universitat Oberta de Catalunya, University of Pavia, Institut Català de la Salut, [Tur C] NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, UK. Centre d’Esclerosi Múltiple de Catalunya (CEMCAT), Barcelona, Spain. Vall d’Hebron Institut de Recerca (VHIR), Barcelona, Spain. [Grussu F, Eshaghi A] NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, UK. Radiomics Group, Vall d’Hebron Institute of Oncology (VHIO), Barcelona, Spain. [De Angelis F, Calvi A] NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, UK. [Prados F] NMR Research Unit, Queen Square MS Centre, Department of Neuroinflammation, UCL Queen Square Institute of Neurology, Faculty of Brain Sciences, University College London, UK. Centre for Medical Image Computing, Medical Physics and Biomedical Engineering Department, University College London, UK. e-Health Center, Universitat Oberta de Catalunya, Spain. [Kanber B] Centre for Medical Image Computing, Medical Physics and Biomedical Engineering Department, University College London, UK, and Vall d'Hebron Barcelona Hospital Campus
- Subjects
Cerebellum ,multiple sclerosis ,computer.software_genre ,caudalidad ,caudality ,Voxel ,Caudality ,magnetic resonance imaging ,Nervous System Diseases::Autoimmune Diseases of the Nervous System::Demyelinating Autoimmune Diseases, CNS::Multiple Sclerosis [DISEASES] ,Brain ,Regular Article ,Multiple Sclerosis, Chronic Progressive ,White Matter ,esclerosi múltiple ,imatge per resonancia magnètica ,medicine.anatomical_structure ,Neurology ,enfermedades del sistema nervioso::enfermedades autoinmunitarias del sistema nervioso::enfermedades autoinmunes desmielinizantes del SNC::esclerosis múltiple [ENFERMEDADES] ,Radiology ,Brainstem ,medicine.symptom ,Motor cortex ,esclerosis múltiple ,medicine.medical_specialty ,Lesion spatial distribution ,imagen por resonancia magnetica ,lesion spatial distribution ,Cognitive Neuroscience ,Computer applications to medicine. Medical informatics ,R858-859.7 ,anisotropy ,Multiple sclerosis ,Lesion ,White matter ,Magnetic resonance imaging ,Atrophy ,Diagnosis::Diagnostic Techniques and Procedures::Diagnostic Imaging::Tomography::Magnetic Resonance Imaging [ANALYTICAL, DIAGNOSTIC AND THERAPEUTIC TECHNIQUES, AND EQUIPMENT] ,SPACE-MS ,distribució espacial de la lesió ,medicine ,Humans ,diagnóstico::técnicas y procedimientos diagnósticos::diagnóstico por imagen::tomografía::imagen por resonancia magnética [TÉCNICAS Y EQUIPOS ANALÍTICOS, DIAGNÓSTICOS Y TERAPÉUTICOS] ,Radiology, Nuclear Medicine and imaging ,RC346-429 ,Esclerosi múltiple - Imatgeria per ressonància magnètica ,Other subheadings::Other subheadings::/diagnostic imaging [Other subheadings] ,ComputingMethodologies_COMPUTERGRAPHICS ,anisotropia ,business.industry ,distribución espacial de la lesión ,Anisotropy ,anisotropía ,Otros calificadores::Otros calificadores::/diagnóstico por imagen [Otros calificadores] ,esclerosis multiple ,medicine.disease ,caudalitat ,Neurology. Diseases of the nervous system ,Neurology (clinical) ,business ,computer - Abstract
Graphical abstract, Highlights • We present SPACE-MS, a tool to assess the spatial distribution of brain lesions. • SPACE-MS metrics mainly reflect caudality and spatial spreading of brain lesions. • More caudal and more widespread brain lesions correlate with worse disability. • SPACE-MS metrics can be automatically obtained using routine anatomical scans. • The usefulness of the SPACE-MS approach should be explored in other conditions., Predicting disability in progressive multiple sclerosis (MS) is extremely challenging. Although there is some evidence that the spatial distribution of white matter (WM) lesions may play a role in disability accumulation, the lack of well-established quantitative metrics that characterise these aspects of MS pathology makes it difficult to assess their relevance for clinical progression. This study introduces a novel approach, called SPACE-MS, to quantitatively characterise spatial distributional features of brain MS lesions, so that these can be assessed as predictors of disability accumulation. In SPACE-MS, the covariance matrix of the spatial positions of each patient’s lesional voxels is computed and its eigenvalues extracted. These are combined to derive rotationally-invariant metrics known to be common and robust descriptors of ellipsoid shape such as anisotropy, planarity and sphericity. Additionally, SPACE-MS metrics include a neuraxis caudality index, which we defined for the whole-brain lesion mask as well as for the most caudal brain lesion. These indicate how distant from the supplementary motor cortex (along the neuraxis) the whole-brain mask or the most caudal brain lesions are. We applied SPACE-MS to data from 515 patients involved in three studies: the MS-SMART (NCT01910259) and MS-STAT1 (NCT00647348) secondary progressive MS trials, and an observational study of primary and secondary progressive MS. Patients were assessed on motor and cognitive disability scales and underwent structural brain MRI (1.5/3.0 T), at baseline and after 2 years. The MRI protocol included 3DT1-weighted (1x1x1mm3) and 2DT2-weighted (1x1x3mm3) anatomical imaging. WM lesions were semiautomatically segmented on the T2-weighted scans, deriving whole-brain lesion masks. After co-registering the masks to the T1 images, SPACE-MS metrics were calculated and analysed through a series of multiple linear regression models, which were built to assess the ability of spatial distributional metrics to explain concurrent and future disability after adjusting for confounders. Patients whose WM lesions laid more caudally along the neuraxis or were more isotropically distributed in the brain (i.e. with whole-brain lesion masks displaying a high sphericity index) at baseline had greater motor and/or cognitive disability at baseline and over time, independently of brain lesion load and atrophy measures. In conclusion, here we introduced the SPACE-MS approach, which we showed is able to capture clinically relevant spatial distributional features of MS lesions independently of the sheer amount of lesions and brain tissue loss. Location of lesions in lower parts of the brain, where neurite density is particularly high, such as in the cerebellum and brainstem, and greater spatial spreading of lesions (i.e. more isotropic whole-brain lesion masks), possibly reflecting a higher number of WM tracts involved, are associated with clinical deterioration in progressive MS. The usefulness of the SPACE-MS approach, here demonstrated in MS, may be explored in other conditions also characterised by the presence of brain WM lesions.
- Published
- 2022
- Full Text
- View/download PDF
26. More Than the Sum of Its Parts: Disrupted Core Periphery of Multiplex Brain Networks in Multiple Sclerosis.
- Author
-
Pontillo G, Prados F, Wink AM, Kanber B, Bisecco A, Broeders TAA, Brunetti A, Cagol A, Calabrese M, Castellaro M, Cocozza S, Colato E, Collorone S, Cortese R, De Stefano N, Douw L, Enzinger C, Filippi M, Foster MA, Gallo A, Gonzalez-Escamilla G, Granziera C, Groppa S, Harbo HF, Høgestøl EA, Llufriu S, Lorenzini L, Martinez-Heras E, Messina S, Moccia M, Nygaard GO, Palace J, Petracca M, Pinter D, Rocca MA, Strijbis E, Toosy A, Valsasina P, Vrenken H, Ciccarelli O, Cole JH, Schoonheim MM, and Barkhof F
- Subjects
- Humans, Male, Female, Cross-Sectional Studies, Adult, Middle Aged, Retrospective Studies, Connectome, Nerve Net diagnostic imaging, Nerve Net physiopathology, Nerve Net pathology, Neural Pathways diagnostic imaging, Neural Pathways physiopathology, Cognitive Dysfunction diagnostic imaging, Cognitive Dysfunction physiopathology, Cognitive Dysfunction etiology, Multiple Sclerosis diagnostic imaging, Multiple Sclerosis physiopathology, Multiple Sclerosis pathology, Magnetic Resonance Imaging, Brain diagnostic imaging, Brain physiopathology, Brain pathology
- Abstract
Disruptions to brain networks, measured using structural (sMRI), diffusion (dMRI), or functional (fMRI) MRI, have been shown in people with multiple sclerosis (PwMS), highlighting the relevance of regions in the core of the connectome but yielding mixed results depending on the studied connectivity domain. Using a multilayer network approach, we integrated these three modalities to portray an enriched representation of the brain's core-periphery organization and explore its alterations in PwMS. In this retrospective cross-sectional study, we selected PwMS and healthy controls with complete multimodal brain MRI acquisitions from 13 European centers within the MAGNIMS network. Physical disability and cognition were assessed with the Expanded Disability Status Scale (EDSS) and the symbol digit modalities test (SDMT), respectively. SMRI, dMRI, and resting-state fMRI data were parcellated into 100 cortical and 14 subcortical regions to obtain networks of morphological covariance, structural connectivity, and functional connectivity. Connectivity matrices were merged in a multiplex, from which regional coreness-the probability of a node being part of the multiplex core-and coreness disruption index (κ)-the global weakening of the core-periphery structure-were computed. The associations of κ with disease status (PwMS vs. healthy controls), clinical phenotype, level of physical disability (EDSS ≥ 4 vs. EDSS < 4), and cognitive impairment (SDMT z-score < -1.5) were tested within a linear model framework. Using random forest permutation feature importance, we assessed the relative contribution of κ in the multiplex and single-layer domains, in addition to conventional MRI measures (brain and lesion volumes), in predicting disease status, physical disability, and cognitive impairment. We studied 1048 PwMS (695F, mean ± SD age: 43.3 ± 11.4 years) and 436 healthy controls (250F, mean ± SD age: 38.3 ± 11.8 years). PwMS showed significant disruption of the multiplex core-periphery organization (κ = -0.14, Hedges' g = 0.49, p < 0.001), correlating with clinical phenotype (F = 3.90, p = 0.009), EDSS (Hedges' g = 0.18, p = 0.01), and SDMT (Hedges' g = 0.30, p < 0.001). Multiplex κ was the only connectomic measure adding to conventional MRI in predicting disease status and cognitive impairment, while physical disability also depended on single-layer contributions. In conclusion, we show that multilayer networks represent a biologically and clinically meaningful framework to model multimodal MRI data, with disruption of the core-periphery structure emerging as a potential connectomic biomarker for disease severity and cognitive impairment in PwMS., (© 2024 The Author(s). Human Brain Mapping published by Wiley Periodicals LLC.)
- Published
- 2025
- Full Text
- View/download PDF
27. Evaluating multiple sclerosis severity loci 30 years after a clinically isolated syndrome.
- Author
-
Sahi N, Haider L, Chung K, Prados Carrasco F, Kanber B, Samson R, Thompson AJ, Trip SA, Brownlee W, Ciccarelli O, Barkhof F, Tur C, Houlden H, and Chard D
- Abstract
The first genome-wide significant multiple sclerosis severity locus, rs10191329, has been pathologically linked to cortical lesion load and brain atrophy. However, observational cohorts such as MSBase have not replicated associations with disability outcomes, instead finding other loci. We evaluated rs10191329 and MSBase loci in a unique cohort of 53 people followed for 30 years after a clinically isolated syndrome, with deep clinical phenotyping and MRI measures of inflammation and neurodegeneration. After 30 years, 26 had developed relapsing-remitting multiple sclerosis, 15 secondary progressive multiple sclerosis and 12 remained diagnosed with a clinically isolated syndrome. Genetic associations with disease severity (age-related multiple sclerosis severity score and Expanded Disability Status Scale), disease course and brain MRI features (white matter lesions, cortical lesions and grey matter fraction) were investigated using regression models and survival analyses. rs10191329 was not associated with multiple sclerosis severity, secondary progressive multiple sclerosis diagnosis or brain MRI features at 30 years. Similarly, MSBase loci were not associated with 30-year disease severity, although rs73091975 was significantly associated with lower 14-year age-related multiple sclerosis severity score in those developing multiple sclerosis. Given that effect sizes for both rs10191329 and rs73091975 were greatest between 14 and 20 years, these findings suggest genetic effects on multiple sclerosis severity may interact non-linearly with disease duration., Competing Interests: N.S. has been a clinical research fellow in a post supported by Merck (supervised by S.A.T. and D.C.) and subsequently by MRC (MR/W019906/1); he has received speaker honoraria from Merck. K.C. has received honoraria for participation and attendance of educational events from Novartis, Roche, Biogen and Merck; she has received honoraria for consultancy work from Novartis, Roche, Biogen, Merck and Viatris. F.P. received a Guarantors of Brain fellowship 2017–20. F.P. and B.K. are supported by the National Institute for Health Research (NIHR), Biomedical Research Centre initiative at University College London Hospitals (UCLH). A.J.T. reports personal fees paid to his institution from Eisai Ltd; is an editorial board member for The Lancet Neurology receiving a free subscription; is Editor-in-Chief for Multiple Sclerosis Journal receiving an honorarium from SAGE Publications; receives support for travel as member, from Clinical Trials Committee, from International Progressive MS Alliance and from the National MS Society (USA) as member, NMSS Research Programs Advisory Committee. S.A.T. has received honoraria from Roche, Merck, Novartis, Sanofi-Genzyme and Biogen in the last 3 years and co-supervises a clinical fellowship at the National Hospital for Neurology and Neurosurgery, London, UK, which is supported by Merck. W.B. has received speaker honoraria and/or acted as a consultant for Biogen, Janssen, Merck, Neuroxpharm, Novartis, Roche, Sandoz, Sanofi and Viatris. He is supported by the National Institute for Health Research (NIHR) University College London Hospitals (UCLH) Biomedical Research Centre. O.C. is a member of an independent DSMB for Novartis, gave a teaching talk on McDonald criteria in a Merck local symposium and contributed to an Advisory Board for Biogen; she is Deputy Editor of Neurology, for which she receives an honorarium. C.T. is currently being funded by a Junior Leader La Caixa Fellowship [The project that gave rise to these results received the support of a fellowship from ‘la Caixa’ Foundation (ID 100010434), fellowship code is LCF/BQ/PI20/117600080]. She has also received the 2021 Merck’s Award for the Investigation in Multiple Sclerosis (Spain) and a grant from Instituto de Salud Carlos III (ISCIII), Spain (grant ID: PI21/01860). In 2015, she received an ECTRIMS Post-doctoral Research Fellowship and has received funding from the UK Multiple Sclerosis Society (grant number 77). She has also received speaker honoraria from Roche and Novartis. She serves on the Editorial Board of Neurology and Multiple Sclerosis Journal. F.B. is supported by the UCLH Biomedical Research Centre. He is a steering committee or iDMC member for Biogen, Merck, Roche, EISAI and Prothena. He is a consultant for Roche, Biogen, Merck, IXICO, Jansen and Combinostics. He has research agreements with Merck, Biogen, GE Healthcare and Roche. He is co-founder and shareholder of Queen Square Analytics Ltd. D.C. is a consultant for Hoffmann-La Roche. In the last 3 years, he has been a consultant for Biogen; received research funding from Hoffmann-La Roche, the International Progressive Multiple Sclerosis Alliance, the Multiple Sclerosis Society and the National Institute for Health Research (NIHR) University College London Hospitals (UCLH) Biomedical Research Centre; and received speaker’s honorarium from Novartis. He co-supervises a clinical fellowship at the National Hospital for Neurology and Neurosurgery, London, UK, which is supported by Merck. The remaining authors have nothing to disclose., (© The Author(s) 2024. Published by Oxford University Press on behalf of the Guarantors of Brain.)
- Published
- 2024
- Full Text
- View/download PDF
28. Disentangling Neurodegeneration From Aging in Multiple Sclerosis Using Deep Learning: The Brain-Predicted Disease Duration Gap.
- Author
-
Pontillo G, Prados F, Colman J, Kanber B, Abdel-Mannan O, Al-Araji S, Bellenberg B, Bianchi A, Bisecco A, Brownlee WJ, Brunetti A, Cagol A, Calabrese M, Castellaro M, Christensen R, Cocozza S, Colato E, Collorone S, Cortese R, De Stefano N, Enzinger C, Filippi M, Foster MA, Gallo A, Gasperini C, Gonzalez-Escamilla G, Granziera C, Groppa S, Hacohen Y, Harbo HFF, He A, Hogestol EA, Kuhle J, Llufriu S, Lukas C, Martinez-Heras E, Messina S, Moccia M, Mohamud S, Nistri R, Nygaard GO, Palace J, Petracca M, Pinter D, Rocca MA, Rovira A, Ruggieri S, Sastre-Garriga J, Strijbis EM, Toosy AT, Uher T, Valsasina P, Vaneckova M, Vrenken H, Wingrove J, Yam C, Schoonheim MM, Ciccarelli O, Cole JH, and Barkhof F
- Subjects
- Humans, Female, Male, Adult, Middle Aged, Retrospective Studies, Cross-Sectional Studies, Longitudinal Studies, Neurodegenerative Diseases diagnostic imaging, Deep Learning, Multiple Sclerosis diagnostic imaging, Multiple Sclerosis pathology, Aging pathology, Aging physiology, Brain diagnostic imaging, Brain pathology, Magnetic Resonance Imaging
- Abstract
Background and Objectives: Disentangling brain aging from disease-related neurodegeneration in patients with multiple sclerosis (PwMS) is increasingly topical. The brain-age paradigm offers a window into this problem but may miss disease-specific effects. In this study, we investigated whether a disease-specific model might complement the brain-age gap (BAG) by capturing aspects unique to MS., Methods: In this retrospective study, we collected 3D T1-weighted brain MRI scans of PwMS to build (1) a cross-sectional multicentric cohort for age and disease duration (DD) modeling and (2) a longitudinal single-center cohort of patients with early MS as a clinical use case. We trained and evaluated a 3D DenseNet architecture to predict DD from minimally preprocessed images while age predictions were obtained with the DeepBrainNet model. The brain-predicted DD gap (the difference between predicted and actual duration) was proposed as a DD-adjusted global measure of MS-specific brain damage. Model predictions were scrutinized to assess the influence of lesions and brain volumes while the DD gap was biologically and clinically validated within a linear model framework assessing its relationship with BAG and physical disability measured with the Expanded Disability Status Scale (EDSS)., Results: We gathered MRI scans of 4,392 PwMS (69.7% female, age: 42.8 ± 10.6 years, DD: 11.4 ± 9.3 years) from 15 centers while the early MS cohort included 749 sessions from 252 patients (64.7% female, age: 34.5 ± 8.3 years, DD: 0.7 ± 1.2 years). Our model predicted DD better than chance (mean absolute error = 5.63 years, R
2 = 0.34) and was nearly orthogonal to the brain-age model (correlation between DD and BAGs: r = 0.06 [0.00-0.13], p = 0.07). Predictions were influenced by distributed variations in brain volume and, unlike brain-predicted age, were sensitive to MS lesions (difference between unfilled and filled scans: 0.55 years [0.51-0.59], p < 0.001). DD gap significantly explained EDSS changes ( B = 0.060 [0.038-0.082], p < 0.001), adding to BAG (Δ R2 = 0.012, p < 0.001). Longitudinally, increasing DD gap was associated with greater annualized EDSS change ( r = 0.50 [0.39-0.60], p < 0.001), with an incremental contribution in explaining disability worsening compared with changes in BAG alone (Δ R2 = 0.064, p < 0.001)., Discussion: The brain-predicted DD gap is sensitive to MS-related lesions and brain atrophy, adds to the brain-age paradigm in explaining physical disability both cross-sectionally and longitudinally, and may be used as an MS-specific biomarker of disease severity and progression.- Published
- 2024
- Full Text
- View/download PDF
29. Improving criteria for dissemination in space in multiple sclerosis by including additional regions.
- Author
-
Foster MA, Pontillo G, Davagnanam I, Collorone S, Prados F, Kanber B, Yiannakas MC, Ogunbowale L, Burke A, Gandini Wheeler-Kingshott CAM, Ciccarelli O, Brownlee W, Barkhof F, and Toosy AT
- Subjects
- Humans, Male, Female, Adult, Corpus Callosum diagnostic imaging, Corpus Callosum pathology, Spinal Cord diagnostic imaging, Spinal Cord pathology, Brain diagnostic imaging, Brain pathology, Temporal Lobe diagnostic imaging, Temporal Lobe pathology, Sensitivity and Specificity, Young Adult, Middle Aged, Multiple Sclerosis diagnostic imaging, Multiple Sclerosis diagnosis, Magnetic Resonance Imaging standards, Optic Nerve diagnostic imaging, Optic Nerve pathology
- Abstract
Objective: We investigated the effects of adding regions to current dissemination in space (DIS) criteria for multiple sclerosis (MS)., Methods: Participants underwent brain, optic nerve, and spinal cord MRI. Baseline DIS was assessed by 2017 McDonald criteria and versions including optic nerve, temporal lobe, or corpus callosum as a fifth region (requiring 2/5), a version with all regions (requiring 3/7) and optic nerve variations requiring 3/5 and 4/5 regions. Performance was evaluated against MS diagnosis (2017 McDonald criteria) during follow-up., Results: Eighty-four participants were recruited (53F, 32.8 ± 7.1 years). 2017 McDonald DIS criteria were 87% sensitive (95% CI: 76-94), 73% specific (50-89), and 83% accurate (74-91) in identifying MS. Modified criteria with optic nerve improved sensitivity to 98% (91-100), with specificity 33% (13-59) and accuracy 84% (74-91). Criteria including temporal lobe showed sensitivity 94% (84-98), specificity 50% (28-72), and accuracy 82% (72-90); criteria including corpus callosum showed sensitivity 90% (80-96), specificity 68% (45-86), and accuracy 85% (75-91). Criteria adding all three regions (3/7 required) had sensitivity 95% (87-99), specificity 55% (32-76), and accuracy 85% (75-91). When requiring 3/5 regions (optic nerve as the fifth), sensitivity was 82% (70-91), specificity 77% (55-92), and accuracy 81% (71-89); with 4/5 regions, sensitivity was 56% (43-69), specificity 95% (77-100), and accuracy 67% (56-77)., Interpretation: Optic nerve inclusion increased sensitivity while lowering specificity. Increasing required regions in optic nerve criteria increased specificity and decreased sensitivity. Results suggest considering the optic nerve for DIS. An option of 3/5 or 4/5 regions preserved specificity, and criteria adding all three regions had highest accuracy., (© 2024 The Author(s). Annals of Clinical and Translational Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association.)
- Published
- 2024
- Full Text
- View/download PDF
30. White Matter Magnetic Resonance Diffusion Measures in Multiple Sclerosis with Overactive Bladder.
- Author
-
Yang X, Liechti MD, Kanber B, Sudre CH, Castellazzi G, Zhang J, Yiannakas MC, Gonzales G, Prados F, Toosy AT, Gandini Wheeler-Kingshott CAM, and Panicker JN
- Abstract
Background: Lower urinary tract (LUT) symptoms are reported in more than 80% of patients with multiple sclerosis (MS), most commonly an overactive bladder (OAB). The relationship between brain white matter (WM) changes in MS and OAB symptoms is poorly understood., Objectives: We aim to evaluate (i) microstructural WM differences across MS patients (pwMS) with OAB symptoms, patients without LUT symptoms, and healthy subjects using diffusion tensor imaging (DTI), and (ii) associations between clinical OAB symptom scores and DTI indices., Methods: Twenty-nine female pwMS [mean age (SD) 43.3 years (9.4)], including seventeen with OAB [mean age (SD) 46.1 years (8.6)] and nine without LUT symptoms [mean age (SD) 37.5 years (8.9)], and fourteen healthy controls (HCs) [mean age (SD) 48.5 years (20)] were scanned in a 3T MRI with a DTI protocol. Additionally, clinical scans were performed for WM lesion segmentation. Group differences in fractional anisotropy (FA) were evaluated using tract-based spatial statistics. The Urinary Symptom Profile questionnaire assessed OAB severity., Results: A statistically significant reduction in FA ( p = 0.004) was identified in microstructural WM in pwMS, compared with HCs. An inverse correlation was found between FA in frontal and parietal WM lobes and OAB scores ( p = 0.021) in pwMS. Areas of lower FA, although this did not reach statistical significance, were found in both frontal lobes and the rest of the non-dominant hemisphere in pwMS with OAB compared with pwMS without LUT symptoms ( p = 0.072)., Conclusions: This study identified that lesions affecting different WM tracts in MS can result in OAB symptoms and demonstrated the role of the WM in the neural control of LUT functions. By using DTI, the association between OAB symptom severity and WM changes were identified, adding knowledge to the current LUT working model. As MS is predominantly a WM disease, these findings suggest that regional WM involvement, including of the anterior corona radiata, anterior thalamic radiation, superior longitudinal fasciculus, and superior frontal-occipital fasciculus and a non-dominant prevalence in WM, can result in OAB symptoms. OAB symptoms in MS correlate with anisotropy changes in different white matter tracts as demonstrated by DTI. Structural impairment in WM tracts plays an important role in LUT symptoms in MS.
- Published
- 2024
- Full Text
- View/download PDF
31. Finding the limits of deep learning clinical sensitivity with fractional anisotropy (FA) microstructure maps.
- Author
-
Gaviraghi M, Ricciardi A, Palesi F, Brownlee W, Vitali P, Prados F, Kanber B, and Gandini Wheeler-Kingshott CAM
- Abstract
Background: Quantitative maps obtained with diffusion weighted (DW) imaging, such as fractional anisotropy (FA) -calculated by fitting the diffusion tensor (DT) model to the data,-are very useful to study neurological diseases. To fit this map accurately, acquisition times of the order of several minutes are needed because many noncollinear DW volumes must be acquired to reduce directional biases. Deep learning (DL) can be used to reduce acquisition times by reducing the number of DW volumes. We already developed a DL network named "one-minute FA," which uses 10 DW volumes to obtain FA maps, maintaining the same characteristics and clinical sensitivity of the FA maps calculated with the standard method using more volumes. Recent publications have indicated that it is possible to train DL networks and obtain FA maps even with 4 DW input volumes, far less than the minimum number of directions for the mathematical estimation of the DT., Methods: Here we investigated the impact of reducing the number of DW input volumes to 4 or 7, and evaluated the performance and clinical sensitivity of the corresponding DL networks trained to calculate FA, while comparing results also with those using our one-minute FA. Each network training was performed on the human connectome project open-access dataset that has a high resolution and many DW volumes, used to fit a ground truth FA. To evaluate the generalizability of each network, they were tested on two external clinical datasets, not seen during training, and acquired on different scanners with different protocols, as previously done., Results: Using 4 or 7 DW volumes, it was possible to train DL networks to obtain FA maps with the same range of values as ground truth - map, only when using HCP test data; pathological sensitivity was lost when tested using the external clinical datasets: indeed in both cases, no consistent differences were found between patient groups. On the contrary, our "one-minute FA" did not suffer from the same problem., Conclusion: When developing DL networks for reduced acquisition times, the ability to generalize and to generate quantitative biomarkers that provide clinical sensitivity must be addressed., Competing Interests: CGW-K was a shareholder in Queen Square Analytics Ltd. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The authors declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2024 Gaviraghi, Ricciardi, Palesi, Brownlee, Vitali, Prados, Kanber and Gandini Wheeler-Kingshott.)
- Published
- 2024
- Full Text
- View/download PDF
32. Improving explanation of motor disability with diffusion-based graph metrics at onset of the first demyelinating event.
- Author
-
Foster MA, Prados F, Collorone S, Kanber B, Cawley N, Davagnanam I, Yiannakas MC, Ogunbowale L, Burke A, Barkhof F, Wheeler-Kingshott CAG, Ciccarelli O, Brownlee W, and Toosy AT
- Subjects
- Humans, Male, Female, Adult, Middle Aged, Diffusion Magnetic Resonance Imaging, Multiple Sclerosis diagnostic imaging, Multiple Sclerosis physiopathology, Disability Evaluation, Magnetic Resonance Imaging, Young Adult, Brain diagnostic imaging, Brain physiopathology, Brain pathology, Connectome, Demyelinating Diseases diagnostic imaging, Demyelinating Diseases physiopathology
- Abstract
Background: Conventional magnetic resonance imaging (MRI) does not account for all disability in multiple sclerosis., Objective: The objective was to assess the ability of graph metrics from diffusion-based structural connectomes to explain motor function beyond conventional MRI in early demyelinating clinically isolated syndrome (CIS)., Methods: A total of 73 people with CIS underwent conventional MRI, diffusion-weighted imaging and clinical assessment within 3 months from onset. A total of 28 healthy controls underwent MRI. Structural connectomes were produced. Differences between patients and controls were explored; clinical associations were assessed in patients. Linear regression models were compared to establish relevance of graph metrics over conventional MRI., Results: Local efficiency ( p = 0.045), clustering ( p = 0.034) and transitivity ( p = 0.036) were reduced in patients. Higher assortativity was associated with higher Expanded Disability Status Scale (EDSS) (β = 74.9, p = 0.026) scores. Faster timed 25-foot walk (T25FW) was associated with higher assortativity (β = 5.39, p = 0.026), local efficiency (β = 27.1, p = 0.041) and clustering (β = 36.1, p = 0.032) and lower small-worldness (β = -3.27, p = 0.015). Adding graph metrics to conventional MRI improved EDSS ( p = 0.045, Δ R
2 = 4) and T25FW ( p < 0.001, Δ R2 = 13.6) prediction., Conclusion: Graph metrics are relevant early in demyelination. They show differences between patients and controls and have relationships with clinical outcomes. Segregation (local efficiency, clustering, transitivity) was particularly relevant. Combining graph metrics with conventional MRI better explained disability., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship and/or publication of this article.- Published
- 2024
- Full Text
- View/download PDF
33. Quantitative MRI outcome measures in CMT1A using automated lower limb muscle segmentation.
- Author
-
O'Donnell LF, Pipis M, Thornton JS, Kanber B, Wastling S, McDowell A, Zafeiropoulos N, Laura M, Skorupinska M, Record CJ, Doherty CM, Herrmann DN, Zetterberg H, Heslegrave AJ, Laban R, Rossor AM, Morrow JM, and Reilly MM
- Subjects
- Humans, Male, Female, Adult, Middle Aged, Disease Progression, Neural Networks, Computer, Image Processing, Computer-Assisted, Young Adult, Charcot-Marie-Tooth Disease diagnostic imaging, Magnetic Resonance Imaging, Lower Extremity diagnostic imaging, Muscle, Skeletal diagnostic imaging
- Abstract
Background: Lower limb muscle magnetic resonance imaging (MRI) obtained fat fraction (FF) can detect disease progression in patients with Charcot-Marie-Tooth disease 1A (CMT1A). However, analysis is time-consuming and requires manual segmentation of lower limb muscles. We aimed to assess the responsiveness, efficiency and accuracy of acquiring FF MRI using an artificial intelligence-enabled automated segmentation technique., Methods: We recruited 20 CMT1A patients and 7 controls for assessment at baseline and 12 months. The three-point-Dixon fat water separation technique was used to determine thigh-level and calf-level muscle FF at a single slice using regions of interest defined using Musclesense, a trained artificial neural network for lower limb muscle image segmentation. A quality control (QC) check and correction of the automated segmentations was undertaken by a trained observer., Results: The QC check took on average 30 seconds per slice to complete. Using QC checked segmentations, the mean calf-level FF increased significantly in CMT1A patients from baseline over an average follow-up of 12.5 months (1.15%±1.77%, paired t-test p=0.016). Standardised response mean (SRM) in patients was 0.65. Without QC checks, the mean FF change between baseline and follow-up, at 1.15%±1.68% (paired t-test p=0.01), was almost identical to that seen in the corrected data, with a similar overall SRM at 0.69., Conclusions: Using automated image segmentation for the first time in a longitudinal study in CMT, we have demonstrated that calf FF has similar responsiveness to previously published data, is efficient with minimal time needed for QC checks and is accurate with minimal corrections needed., Competing Interests: Competing interests: HZ has served at scientific advisory boards and/or as a consultant for Abbvie, Acumen, Alector, Alzinova, ALZPath, Annexon, Apellis, Artery Therapeutics, AZTherapies, CogRx, Denali, Eisai, Nervgen, Novo Nordisk, Optoceutics, Passage Bio, Pinteon Therapeutics, Prothena, Red Abbey Labs, reMYND, Roche, Samumed, Siemens Healthineers, Triplet Therapeutics and Wave, has given lectures in symposia sponsored by Cellectricon, Fujirebio, Alzecure, Biogen and Roche, and is a cofounder of Brain Biomarker Solutions in Gothenburg AB (BBS), which is a part of the GU Ventures Incubator Program (outside submitted work)., (© Author(s) (or their employer(s)) 2024. No commercial re-use. See rights and permissions. Published by BMJ.)
- Published
- 2024
- Full Text
- View/download PDF
34. Optic chiasm involvement in multiple sclerosis, aquaporin-4 antibody-positive neuromyelitis optica spectrum disorder and myelin oligodendrocyte glycoprotein-associated disease.
- Author
-
Bianchi A, Cortese R, Prados F, Tur C, Kanber B, Yiannakas MC, Samson R, De Angelis F, Magnollay L, Jacob A, Brownlee W, Trip A, Nicholas R, Hacohen Y, Barkhof F, Ciccarelli O, and Toosy AT
- Subjects
- Adult, Female, Humans, Male, Middle Aged, Magnetic Resonance Imaging, Optic Neuritis immunology, Optic Neuritis diagnostic imaging, Optic Neuritis pathology, Young Adult, Aquaporin 4 immunology, Autoantibodies blood, Multiple Sclerosis, Relapsing-Remitting diagnostic imaging, Multiple Sclerosis, Relapsing-Remitting immunology, Multiple Sclerosis, Relapsing-Remitting pathology, Myelin-Oligodendrocyte Glycoprotein immunology, Neuromyelitis Optica immunology, Neuromyelitis Optica diagnostic imaging, Neuromyelitis Optica pathology, Optic Chiasm pathology, Optic Chiasm diagnostic imaging, Tomography, Optical Coherence
- Abstract
Background: Optic neuritis (ON) is a common feature of inflammatory demyelinating diseases (IDDs) such as multiple sclerosis (MS), aquaporin 4-antibody neuromyelitis optica spectrum disorder (AQP4 + NMOSD) and myelin oligodendrocyte glycoprotein antibody-associated disease (MOGAD). However, the involvement of the optic chiasm (OC) in IDD has not been fully investigated., Aims: To examine OC differences in non-acute IDD patients with (ON+) and without ON (ON-) using magnetisation transfer ratio (MTR), to compare differences between MS, AQP4 + NMOSD and MOGAD and understand their associations with other neuro-ophthalmological markers., Methods: Twenty-eight relapsing-remitting multiple sclerosis (RRMS), 24 AQP4 + NMOSD, 28 MOGAD patients and 32 healthy controls (HCs) underwent clinical evaluation, MRI and optical coherence tomography (OCT) scan. Multivariable linear regression models were applied., Results: ON + IDD patients showed lower OC MTR than HCs (28.87 ± 4.58 vs 31.65 ± 4.93; p = 0.004). When compared with HCs, lower OC MTR was found in ON + AQP4 + NMOSD (28.55 ± 4.18 vs 31.65 ± 4.93; p = 0.020) and MOGAD (28.73 ± 4.99 vs 31.65 ± 4.93; p = 0.007) and in ON- AQP4 + NMOSD (28.37 ± 7.27 vs 31.65 ± 4.93; p = 0.035). ON+ RRMS had lower MTR than ON- RRMS (28.87 ± 4.58 vs 30.99 ± 4.76; p = 0.038). Lower OC MTR was associated with higher number of ON (regression coefficient (RC) = -1.15, 95% confidence interval (CI) = -1.819 to -0.490, p = 0.001), worse visual acuity (RC = -0.026, 95% CI = -0.041 to -0.011, p = 0.001) and lower peripapillary retinal nerve fibre layer (pRNFL) thickness (RC = 1.129, 95% CI = 0.199 to 2.059, p = 0.018) when considering the whole IDD group., Conclusion: OC microstructural damage indicates prior ON in IDD and is linked to reduced vision and thinner pRNFL., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared the following potential conflicts of interest with respect to the research, authorship and/or publication of this article: AB has received a research grant from the Italian Society of Neurology; she has been awarded a MAGNIMS-ECTRIMS fellowship in 2023. RC received speaker honoraria/travel support from Roche, Merck Serono, UCB, Sanofi-Genzyme, Novartis, and Janssen, and received a research grant from the Italian Ministry of University and Research. FP received a Guarantors of Brain fellowship 2017-2020. CT is currently being funded by a Miguel Servet contract, awarded by the Instituto de Salud Carlos III (ISCIII), Ministerio de Ciencia e Innovación de España (CP23/00117). She has also received a 2020 Junior Leader La Caixa Fellowship (fellowship code: LCF/BQ/PI20/11760008), awarded by “la Caixa” Foundation (ID 100010434), a 2021 Merck’s Award for the Investigation in MS, awarded by Fundación Merck Salud (Spain), a 2021 Research Grant (PI21/01860) awarded by the ISCIII, Ministerio de Ciencia e Innovación de España, and a FORTALECE research grant (FORT23/00034) also by the ISCIII, Ministerio de Ciencia e Innovación de España. In 2015, she received an ECTRIMS Post-doctoral Research Fellowship and has received funding from the UK MS Society. She is a member of the Editorial Board of Neurology Journal and Multiple Sclerosis Journal. She has also received honoraria from Roche, Novartis, Merck, Immunic Therapeutics, and Bristol Myers Squibb. She is a steering committee member of the O’HAND trial and of the Consensus group on Follow-on DMTs. BK is supported by the NIHR BRC at UCL. FDA has received congress fees or speaker honoraria and/or acted as a consultant for Neurology Academy, Coloplast, Janssen, Merck, Novartis, Roche,Sanofi. WJB has received speaker honoraria and/or acted as a consultant for Biogen, Janssen, Merck, Neuraxpharm, Novartis, Roche, Sanofi, Sandoz and Viatris; he is supported by the NIHR UCLH Biomedical Research Centre. FB is Steering committee or Data Safety Monitoring Board member for Biogen, Merck, ATRI/ACTC and Prothena. He is consultant for Roche, Celltrion, Rewind Therapeutics, Merck, IXICO, Jansen, Combinostics. He has research agreements with Merck, Biogen, GE Healthcare, Roche. Co-founder and shareholder of Queen Square Analytics LTD. OC is a member of independent DSMB for Novartis, gave a teaching talk on McDonald criteria in a Merck local symposium, and contributed to an Advisory Board for Biogen; she is Deputy Editor of Neurology, for which she receives an honorarium. Merck. AD, VC, DW, JS, MCY, and RN have no disclosure. ATT has speaker honoraria from Merck, Biomedia, Sereno Symposia International Foundation, Bayer and At the Limits and meeting expenses from Merck, Biogen Idec and Novartis. Supported by recent grants from the MRC (MR/S026088/1), NIHR BRC (541/CAP/OC/818837) and RoseTrees Trust (A1332 and PGL21/10079). Associate editor for Frontiers in Neurology – Neuro-ophthalmology section and on the editorial board for Neurology and Multiple Sclerosis Journal.
- Published
- 2024
- Full Text
- View/download PDF
35. What contributes to disability in progressive MS? A brain and cervical cord-matched quantitative MRI study.
- Author
-
Tur C, Battiston M, Yiannakas MC, Collorone S, Calvi A, Prados F, Kanber B, Grussu F, Ricciardi A, Pajak P, Martinelli D, Schneider T, Ciccarelli O, Samson RS, and Wheeler-Kingshott CAG
- Subjects
- Humans, Brain pathology, Magnetic Resonance Imaging methods, Gray Matter pathology, Cervical Cord pathology, Multiple Sclerosis pathology, Multiple Sclerosis, Chronic Progressive pathology
- Abstract
Background: We assessed the ability of a brain-and-cord-matched quantitative magnetic resonance imaging (qMRI) protocol to differentiate patients with progressive multiple sclerosis (PMS) from controls, in terms of normal-appearing (NA) tissue abnormalities, and explain disability., Methods: A total of 27 patients and 16 controls were assessed on the Expanded Disability Status Scale (EDSS), 25-foot timed walk (TWT), 9-hole peg (9HPT) and symbol digit modalities (SDMT) tests. All underwent 3T brain and (C2-C3) cord structural imaging and qMRI (relaxometry, quantitative magnetisation transfer, multi-shell diffusion-weighted imaging), using a fast brain-and-cord-matched protocol with brain-and-cord-unified imaging readouts. Lesion and NA-tissue volumes and qMRI metrics reflecting demyelination and axonal loss were obtained. Random forest analyses identified the most relevant volumetric/qMRI measures to clinical outcomes. Confounder-adjusted linear regression estimated the actual MRI-clinical associations., Results: Several qMRI/volumetric differences between patients and controls were observed ( p < 0.01). Higher NA-deep grey matter quantitative-T1 (EDSS: beta = 7.96, p = 0.006; 9HPT: beta = -0.09, p = 0.004), higher NA-white matter orientation dispersion index (TWT: beta = -3.21, p = 0.005; SDMT: beta = -847.10, p < 0.001), lower whole-cord bound pool fraction (9HPT: beta = 0.79, p = 0.001) and higher NA-cortical grey matter quantitative-T1 (SDMT = -94.31, p < 0.001) emerged as particularly relevant predictors of greater disability., Conclusion: Fast brain-and-cord-matched qMRI protocols are feasible and identify demyelination - combined with other mechanisms - as key for disability accumulation in PMS., Competing Interests: Declaration of Conflicting InterestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship and/or publication of this article.
- Published
- 2024
- Full Text
- View/download PDF
36. Associations between cortical lesions, optic nerve damage, and disability at the onset of multiple sclerosis: insights into neurodegenerative processes.
- Author
-
Varmpompiti K, Chow G, Foster M, Kodali S, Prados F, Yiannakas MC, Kanber B, Burke A, Ogunbowale L, Davagnanam I, Toosy AT, and Collorone S
- Subjects
- Humans, Retinal Ganglion Cells pathology, Retina pathology, Optic Nerve pathology, Tomography, Optical Coherence, Multiple Sclerosis complications, Multiple Sclerosis diagnostic imaging, Retinal Degeneration etiology
- Abstract
Background: Multiple sclerosis cortical lesions are areas of demyelination and neuroaxonal loss. Retinal layer thickness, measured with optical coherence tomography (OCT), is an emerging biomarker of neuroaxonal loss. Studies have reported correlations between cortical lesions and retinal layer thinning in established multiple sclerosis, suggesting a shared pathophysiological process. Here, we assessed the correlation between cortical lesions and OCT metrics at the onset of multiple sclerosis, examining, for the first time, associations with physical or cognitive disability., Objective: To examine the relationship between cortical lesions, optic nerve and retinal layer thicknesses, and physical and cognitive disability at the first demyelinating event., Methods: Thirty-nine patients and 22 controls underwent 3T-MRI, optical coherence tomography, and clinical tests. We identified cortical lesions on phase-sensitive inversion recovery sequences, including occipital cortex lesions. We measured the estimated total intracranial volume and the white matter lesion volume. OCT metrics included peripapillary retinal nerve fibre layer (pRNFL), ganglion cell and inner plexiform layer (GCIPL) and inner nuclear layer (INL) thicknesses., Results: Higher total cortical and leukocortical lesion volumes correlated with thinner pRNFL (B = -0.0005, 95 % CI -0.0008 to -0.0001, p = 0.01; B = -0.0005, 95 % CI -0.0008 to -0.0001, p = 0.01, respectively). Leukocortical lesion number correlated with colour vision deficits (B = 0.58, 95 %CI 0.039 to 1,11, p = 0.036). Thinner GCIPL correlated with a higher Expanded Disability Status Scale (B = -0.06, 95 % CI -1.1 to -0.008, p = 0.026). MS diagnosis (n = 18) correlated with higher cortical and leukocortical lesion numbers (p = 0.004 and p = 0.003), thinner GCIPL (p = 0.029) and INL (p = 0.041)., Conclusion: The association between cortical lesions and axonal damage in the optic nerve reinforces the role of neurodegenerative processes in MS pathogenesis at onset., Competing Interests: Declaration of competing interest MF is supported by a grant from the MRC (MR/S026088/1). SC is funded by Rosetrees and Bermuda Trust (PGL21/10079). FP received a Guarantors of Brain fellowship 2017-2020 and is supported by National Institute for Health Research (NIHR), Biomedical Research Centre initiative at University College London Hospitals (UCLH). ATT is supported by recent awards from the MRC (MR/S026088/1), NIHR BRC (541/CAP/OC/818837) and Roserrees Trust (A1332 and PGL21/10079) and MSIF; ATT has received speaker honoraria from Biomedia and Merck and meeting expenses from Biogen Idec and Merck. He was the UK PI for two clinical trials sponsored by MEDDAY pharmaceutical company (MD1003 in optic neuropathy [MS-ON - NCT02220244] and progressive MS [MS-SPI2 - NCT02220244]. The remaining authors report no disclosures., (Copyright © 2023. Published by Elsevier B.V.)
- Published
- 2024
- Full Text
- View/download PDF
37. Visual Snow Syndrome Improves With Modulation of Resting-State Functional MRI Connectivity After Mindfulness-Based Cognitive Therapy: An Open-Label Feasibility Study.
- Author
-
Wong SH, Pontillo G, Kanber B, Prados F, Wingrove J, Yiannakas M, Davagnanam I, Gandini Wheeler-Kingshott CAM, and Toosy AT
- Subjects
- Humans, Male, Feasibility Studies, Magnetic Resonance Imaging, Treatment Outcome, Mindfulness, Cognitive Behavioral Therapy, Perceptual Disorders, Vision Disorders
- Abstract
Background: Visual snow syndrome (VSS) is associated with functional connectivity (FC) dysregulation of visual networks (VNs). We hypothesized that mindfulness-based cognitive therapy, customized for visual symptoms (MBCT-vision), can treat VSS and modulate dysfunctional VNs., Methods: An open-label feasibility study for an 8-week MBCT-vision treatment program was conducted. Primary (symptom severity; impact on daily life) and secondary (WHO-5; CORE-10) outcomes at Week 9 and Week 20 were compared with baseline. Secondary MRI outcomes in a subcohort compared resting-state functional and diffusion MRI between baseline and Week 20., Results: Twenty-one participants (14 male participants, median 30 years, range 22-56 years) recruited from January 2020 to October 2021. Two (9.5%) dropped out. Self-rated symptom severity (0-10) improved: baseline (median [interquartile range (IQR)] 7 [6-8]) vs Week 9 (5.5 [3-7], P = 0.015) and Week 20 (4 [3-6], P < 0.001), respectively. Self-rated impact of symptoms on daily life (0-10) improved: baseline (6 [5-8]) vs Week 9 (4 [2-5], P = 0.003) and Week 20 (2 [1-3], P < 0.001), respectively. WHO-5 Wellbeing (0-100) improved: baseline (median [IQR] 52 [36-56]) vs Week 9 (median 64 [47-80], P = 0.001) and Week 20 (68 [48-76], P < 0.001), respectively. CORE-10 Distress (0-40) improved: baseline (15 [12-20]) vs Week 9 (12.5 [11-16.5], P = 0.003) and Week 20 (11 [10-14], P = 0.003), respectively. Within-subject fMRI analysis found reductions between baseline and Week 20, within VN-related FC in the i) left lateral occipital cortex (size = 82 mL, familywise error [FWE]-corrected P value = 0.006) and ii) left cerebellar lobules VIIb/VIII (size = 65 mL, FWE-corrected P value = 0.02), and increases within VN-related FC in the precuneus/posterior cingulate cortex (size = 69 mL, cluster-level FWE-corrected P value = 0.02)., Conclusions: MBCT-vision was a feasible treatment for VSS, improved symptoms and modulated FC of VNs. This study also showed proof-of-concept for intensive mindfulness interventions in the treatment of neurological conditions., Competing Interests: The authors report no conflicts of interest., (Copyright © 2023 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the North American Neuro-Opthalmology Society.)
- Published
- 2024
- Full Text
- View/download PDF
38. Treatment reduces the incidence of newly appearing multiple sclerosis lesions evolving into chronic active, slowly expanding lesions: A retrospective analysis.
- Author
-
Calvi A, Mendelsohn Z, Hamed W, Chard D, Tur C, Stutters J, MacManus D, Kanber B, Wheeler-Kingshott CAMG, Barkhof F, and Prados F
- Subjects
- Humans, Fingolimod Hydrochloride therapeutic use, Retrospective Studies, Incidence, Magnetic Resonance Imaging, Multiple Sclerosis drug therapy, Multiple Sclerosis epidemiology, Multiple Sclerosis pathology, Multiple Sclerosis, Chronic Progressive drug therapy, Multiple Sclerosis, Chronic Progressive epidemiology
- Abstract
Background and Purpose: Newly appearing lesions in multiple sclerosis (MS) may evolve into chronically active, slowly expanding lesions (SELs), leading to sustained disability progression. The aim of this study was to evaluate the incidence of newly appearing lesions developing into SELs, and their correlation to clinical evolution and treatment., Methods: A retrospective analysis of a fingolimod trial in primary progressive MS (PPMS; INFORMS, NCT00731692) was undertaken. Data were available from 324 patients with magnetic resonance imaging scans up to 3 years after screening. New lesions at year 1 were identified with convolutional neural networks, and SELs obtained through a deformation-based method. Clinical disability was assessed annually by Expanded Disability Status Scale (EDSS), Nine-Hole Peg Test, Timed 25-Foot Walk, and Paced Auditory Serial Addition Test. Linear, logistic, and mixed-effect models were used to assess the relationship between the Jacobian expansion in new lesions and SELs, disability scores, and treatment status., Results: One hundred seventy patients had ≥1 new lesions at year 1 and had a higher lesion count at screening compared to patients with no new lesions (median = 27 vs. 22, p = 0.007). Among the new lesions (median = 2 per patient), 37% evolved into definite or possible SELs. Higher SEL volume and count were associated with EDSS worsening and confirmed disability progression. Treated patients had lower volume and count of definite SELs (β = -0.04, 95% confidence interval [CI] = -0.07 to -0.01, p = 0.015; β = -0.36, 95% CI = -0.67 to -0.06, p = 0.019, respectively)., Conclusions: Incident chronic active lesions are common in PPMS, and fingolimod treatment can reduce their number., (© 2023 The Authors. European Journal of Neurology published by John Wiley & Sons Ltd on behalf of European Academy of Neurology.)
- Published
- 2024
- Full Text
- View/download PDF
39. Commercially available artificial intelligence tools for fracture detection: the evidence.
- Author
-
Pauling C, Kanber B, Arthurs OJ, and Shelmerdine SC
- Abstract
Missed fractures are a costly healthcare issue, not only negatively impacting patient lives, leading to potential long-term disability and time off work, but also responsible for high medicolegal disbursements that could otherwise be used to improve other healthcare services. When fractures are overlooked in children, they are particularly concerning as opportunities for safeguarding may be missed. Assistance from artificial intelligence (AI) in interpreting medical images may offer a possible solution for improving patient care, and several commercial AI tools are now available for radiology workflow implementation. However, information regarding their development, evidence for performance and validation as well as the intended target population is not always clear, but vital when evaluating a potential AI solution for implementation. In this article, we review the range of available products utilizing AI for fracture detection (in both adults and children) and summarize the evidence, or lack thereof, behind their performance. This will allow others to make better informed decisions when deciding which product to procure for their specific clinical requirements., Competing Interests: None declared., (© The Author(s) 2023. Published by Oxford University Press on behalf of the British Institute of Radiology.)
- Published
- 2023
- Full Text
- View/download PDF
40. Identification of different MRI atrophy progression trajectories in epilepsy by subtype and stage inference.
- Author
-
Xiao F, Caciagli L, Wandschneider B, Sone D, Young AL, Vos SB, Winston GP, Zhang Y, Liu W, An D, Kanber B, Zhou D, Sander JW, Thom M, Duncan JS, Alexander DC, Galovic M, and Koepp MJ
- Subjects
- Humans, Artificial Intelligence, Cross-Sectional Studies, Magnetic Resonance Imaging, Atrophy pathology, Brain diagnostic imaging, Brain pathology, Epilepsy diagnostic imaging, Epilepsy pathology
- Abstract
Artificial intelligence (AI)-based tools are widely employed, but their use for diagnosis and prognosis of neurological disorders is still evolving. Here we analyse a cross-sectional multicentre structural MRI dataset of 696 people with epilepsy and 118 control subjects. We use an innovative machine-learning algorithm, Subtype and Stage Inference, to develop a novel data-driven disease taxonomy, whereby epilepsy subtypes correspond to distinct patterns of spatiotemporal progression of brain atrophy.In a discovery cohort of 814 individuals, we identify two subtypes common to focal and idiopathic generalized epilepsies, characterized by progression of grey matter atrophy driven by the cortex or the basal ganglia. A third subtype, only detected in focal epilepsies, was characterized by hippocampal atrophy. We corroborate external validity via an independent cohort of 254 people and confirm that the basal ganglia subtype is associated with the most severe epilepsy.Our findings suggest fundamental processes underlying the progression of epilepsy-related brain atrophy. We deliver a novel MRI- and AI-guided epilepsy taxonomy, which could be used for individualized prognostics and targeted therapeutics., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Guarantors of Brain.)
- Published
- 2023
- Full Text
- View/download PDF
41. Prostate MR image quality of apparent diffusion coefficient maps versus fractional intracellular volume maps from VERDICT MRI using the PI-QUAL score and a dedicated Likert scale for artefacts.
- Author
-
Singh S, Giganti F, Dickinson L, Rogers H, Kanber B, Clemente J, Pye H, Heavey S, Stopka-Farooqui U, Johnston EW, Moore CM, Freeman A, Whitaker HC, Alexander DC, Panagiotaki E, and Punwani S
- Subjects
- Male, Humans, Artifacts, Prospective Studies, Diffusion Magnetic Resonance Imaging methods, Magnetic Resonance Imaging methods, Retrospective Studies, Prostate pathology, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology
- Abstract
Purpose: This study aimed to assess the image quality of apparent diffusion coefficient (ADC) maps derived from conventional diffusion-weighted MRI and fractional intracellular volume maps (FIC) from VERDICT MRI (Vascular, Extracellular, Restricted Diffusion for Cytometry in Tumours) in patients from the INNOVATE trial. The inter-reader agreement was also assessed., Methods: Two readers analysed both ADC and FIC maps from 57 patients enrolled in the INNOVATE prospective trial. Image quality was assessed using the Prostate Imaging Quality (PI-QUAL) score and a subjective image quality Likert score (Likert-IQ). The image quality of FIC and ADC were compared using a Wilcoxon Signed Ranks test. The inter-reader agreement was assessed with Cohen's kappa., Results: There was no statistically significant difference between the PI-QUAL score for FIC datasets compared to ADC datasets for either reader (p = 0.240 and p = 0.614). Using the Likert-IQ score, FIC image quality was higher compared to ADC (p = 0.021) as assessed by reader-1 but not for reader-2 (p = 0.663). The inter-reader agreement was 'fair' for PI-QUAL scoring of datasets with FIC maps at 0.27 (95% confidence interval; 0.08-0.46) and ADC datasets at 0.39 (95% confidence interval 0.22-0.57). For Likert scoring, the inter-reader agreement was also 'fair' for FIC maps at 0.38 (95% confidence interval; 0.10-0.65) and substantial for ADC maps at 0.62 (95% confidence interval; 0.39-0.86)., Conclusion: Image quality was comparable for FIC and ADC. The inter-reader agreement was similar when using PIQUAL for both FIC and ADC datasets but higher for ADC maps compared to FIC maps using the image quality Likert score., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Crown Copyright © 2023. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
42. Genetic influences on disease course and severity, 30 years after a clinically isolated syndrome.
- Author
-
Sahi N, Haider L, Chung K, Prados Carrasco F, Kanber B, Samson R, Thompson AJ, Gandini Wheeler-Kingshott CAM, Trip SA, Brownlee W, Ciccarelli O, Barkhof F, Tur C, Houlden H, and Chard D
- Abstract
Multiple sclerosis risk has a well-established polygenic component, yet the genetic contribution to disease course and severity remains unclear and difficult to examine. Accurately measuring disease progression requires long-term study of clinical and radiological outcomes with sufficient follow-up duration to confidently confirm disability accrual and multiple sclerosis phenotypes. In this retrospective study, we explore genetic influences on long-term disease course and severity; in a unique cohort of clinically isolated syndrome patients with homogenous 30-year disease duration, deep clinical phenotyping and advanced MRI metrics. Sixty-one clinically isolated syndrome patients [41 female (67%): 20 male (33%)] underwent clinical and MRI assessment at baseline, 1-, 5-, 10-, 14-, 20- and 30-year follow-up (mean age ± standard deviation: 60.9 ± 6.5 years). After 30 years, 29 patients developed relapsing-remitting multiple sclerosis, 15 developed secondary progressive multiple sclerosis and 17 still had a clinically isolated syndrome. Twenty-seven genes were investigated for associations with clinical outcomes [including disease course and Expanded Disability Status Scale (EDSS)] and brain MRI (including white matter lesions, cortical lesions, and brain tissue volumes) at the 30-year follow-up. Genetic associations with changes in EDSS, relapses, white matter lesions and brain atrophy (third ventricular and medullary measurements) over 30 years were assessed using mixed-effects models. HLA-DRB1*1501 -positive ( n = 26) patients showed faster white matter lesion accrual [+1.96 lesions/year (0.64-3.29), P = 3.8 × 10
-3 ], greater 30-year white matter lesion volumes [+11.60 ml, (5.49-18.29), P = 1.27 × 10-3 ] and higher annualized relapse rates [+0.06 relapses/year (0.005-0.11), P = 0.031] compared with HLA-DRB1*1501 -negative patients ( n = 35). PVRL2 -positive patients ( n = 41) had more cortical lesions (+0.83 [0.08-1.66], P = 0.042), faster EDSS worsening [+0.06 points/year (0.02-0.11), P = 0.010], greater 30-year EDSS [+1.72 (0.49-2.93), P = 0.013; multiple sclerosis cases: +2.60 (1.30-3.87), P = 2.02 × 10-3 ], and greater risk of secondary progressive multiple sclerosis [odds ratio (OR) = 12.25 (1.15-23.10), P = 0.031] than PVRL2 -negative patients ( n = 18). In contrast, IRX1 -positive ( n = 30) patients had preserved 30-year grey matter fraction [+0.76% (0.28-1.29), P = 8.4 × 10-3 ], lower risk of cortical lesions [OR = 0.22 (0.05-0.99), P = 0.049] and lower 30-year EDSS [-1.35 (-0.87,-3.44), P = 0.026; multiple sclerosis cases: -2.12 (-0.87, -3.44), P = 5.02 × 10-3 ] than IRX1 -negative patients ( n = 30). In multiple sclerosis cases, IRX1 -positive patients also had slower EDSS worsening [-0.07 points/year (-0.01,-0.13), P = 0.015] and lower risk of secondary progressive multiple sclerosis [OR = 0.19 (0.04-0.92), P = 0.042]. These exploratory findings support diverse genetic influences on pathological mechanisms associated with multiple sclerosis disease course. HLA-DRB1*1501 influenced white matter inflammation and relapses, while IRX1 (protective) and PVRL2 (adverse) were associated with grey matter pathology (cortical lesions and atrophy), long-term disability worsening and the risk of developing secondary progressive multiple sclerosis., Competing Interests: N.S. has been a clinical research fellow in a post supported by Merck (supervised by S.A.T. and D.C.) and subsequently by MRC (MR/W019906/1). K.C has received honoraria for participation and attendance of educational events from Novartis, Roche, Biogen and Merck; she has received honoraria for consultancy work from Novartis, Roche, Biogen, Merck and Viatris. F.P.C. received a Guarantors of Brain fellowship 2017–2020. F.P.C. and B.K. are supported by the National Institute for Health Research (NIHR), Biomedical Research Centre initiative at University College London Hospitals (UCLH). A.J.T. reports personal fees paid to his institution from Eisai Ltd; is an editorial board member for The Lancet Neurology receiving a free subscription; is Editor-in-Chief for MS Journal receiving an honorarium from SAGE Publications; receives support for travel as member, Clinical Trials Committee, International PPMS Alliance, and from the National MS Society (NMSS) (USA) as member, NMSS Research Programs Advisory Committee. S.A.T. receives support from the UCLH Biomedical Research Centre; has received honoraria from Roche, Merck, Novartis, Sanofi-Genzyme and Biogen in the last 3 years and co-supervises a clinical fellowship at the National Hospital for Neurology and Neurosurgery, London, which is supported by Merck. W.B. has received speaker honoraria for educational activities and/or acted as a consultant for Biogen, Janssen, Merck, Novartis, Roche, Sanofi-Genzyme and Viatris. O.C. is a member of independent data and safety monitoring board for Novartis, gave a teaching talk on McDonald criteria in a Merck local symposium, and contributed to an Advisory Board for Biogen; she is Deputy Editor of Neurology, for which she receives an honorarium. C.T. is currently being funded by a Junior Leader La Caixa Fellowship (The project that gave rise to these results received the support of a fellowship from ‘la Caixa’ Foundation (ID 100010434); fellowship code is LCF/BQ/PI20/117600080; She has also received the 2021 Merck’s Award for the Investigation in MS (Spain) and a grant from Instituto de Salud Carlos III (ISCIII), Spain (grant ID: PI21/01860); In 2015, she received an ECTRIMS Post-doctoral Research Fellowship and has received funding from the UK Multiple Sclerosis Society (grant number 77); She has also received speaker honoraria from Roche and Novartis; She serves on the Editorial Board of Neurology and Multiple Sclerosis Journal. F.B. is supported by the UCLH biomedical research centre; He is a steering committee or iDMC member for Biogen, Merck, Roche, EISAI and Prothena; He is a consultant for Roche, Biogen, Merck, IXICO, Jansen, Combinostics; He has research agreements with Merck, Biogen, GE Healthcare, Roche; He is co-founder and shareholder of Queen Square Analytics LTD. D.C. is a consultant for Hoffmann-La Roche; In the last three years he has been a consultant for Biogen, received research funding from Hoffmann-La Roche, the International Progressive Multiple Sclerosis Alliance, the Multiple Sclerosis Society, and the National Institute for Health Research (NIHR) University College London Hospitals (UCLH) Biomedical Research Centre, and speaker’s honorarium from Novartis; He co-supervises a clinical fellowship at the National Hospital for Neurology and Neurosurgery, London, which is supported by Merck. The remaining authors, L.H., R.S., C.A.M.G.W.K. and H.H.: nothing to disclose., (© The Author(s) 2023. Published by Oxford University Press on behalf of the Guarantors of Brain.)- Published
- 2023
- Full Text
- View/download PDF
43. Multimodal Analysis of the Visual Pathways in Friedreich's Ataxia Reveals Novel Biomarkers.
- Author
-
Thomas-Black G, Altmann DR, Crook H, Solanky N, Carrasco FP, Battiston M, Grussu F, Yiannakas MC, Kanber B, Jolly JK, Brett J, Downes SM, Moran M, Chan PK, Adewunmi E, Gandini Wheeler-Kingshott CAM, Németh AH, Festenstein R, Bremner F, and Giunti P
- Subjects
- Humans, Visual Pathways diagnostic imaging, Visual Acuity, Retina diagnostic imaging, Tomography, Optical Coherence methods, Friedreich Ataxia genetics, Optic Nerve Diseases
- Abstract
Background: Optic neuropathy is a near ubiquitous feature of Friedreich's ataxia (FRDA). Previous studies have examined varying aspects of the anterior and posterior visual pathways but none so far have comprehensively evaluated the heterogeneity of degeneration across different areas of the retina, changes to the macula layers and combined these with volumetric MRI studies of the visual cortex and frataxin level., Methods: We investigated 62 genetically confirmed FRDA patients using an integrated approach as part of an observational cohort study. We included measurement of frataxin protein levels, clinical evaluation of visual and neurological function, optical coherence tomography to determine retinal nerve fibre layer thickness and macular layer volume and volumetric brain MRI., Results: We demonstrate that frataxin level correlates with peripapillary retinal nerve fibre layer thickness and that retinal sectors differ in their degree of degeneration. We also shown that retinal nerve fibre layer is thinner in FRDA patients than controls and that this thinning is influenced by the AAO and GAA1. Furthermore we show that the ganglion cell and inner plexiform layers are affected in FRDA. Our MRI data indicate that there are borderline correlations between retinal layers and areas of the cortex involved in visual processing., Conclusion: Our study demonstrates the uneven distribution of the axonopathy in the retinal nerve fibre layer and highlight the relative sparing of the papillomacular bundle and temporal sectors. We show that thinning of the retinal nerve fibre layer is associated with frataxin levels, supporting the use the two biomarkers in future clinical trials design. © 2022 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society., (© 2022 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.)
- Published
- 2023
- Full Text
- View/download PDF
44. Aberrant olfactory network functional connectivity in people with olfactory dysfunction following COVID-19 infection: an exploratory, observational study.
- Author
-
Wingrove J, Makaronidis J, Prados F, Kanber B, Yiannakas MC, Magee C, Castellazzi G, Grandjean L, Golay X, Tur C, Ciccarelli O, D'Angelo E, Gandini Wheeler-Kingshott CAM, and Batterham RL
- Abstract
Background: Olfactory impairments and anosmia from COVID-19 infection typically resolve within 2-4 weeks, although in some cases, symptoms persist longer. COVID-19-related anosmia is associated with olfactory bulb atrophy, however, the impact on cortical structures is relatively unknown, particularly in those with long-term symptoms., Methods: In this exploratory, observational study, we studied individuals who experienced COVID-19-related anosmia, with or without recovered sense of smell, and compared against individuals with no prior COVID-19 infection (confirmed by antibody testing, all vaccine naïve). MRI Imaging was carried out between the 15th July and 17th November 2020 at the Queen Square House Clinical Scanning Facility, UCL, United Kingdom. Using functional magnetic resonance imaging (fMRI) and structural imaging, we assessed differences in functional connectivity (FC) between olfactory regions, whole brain grey matter (GM) cerebral blood flow (CBF) and GM density., Findings: Individuals with anosmia showed increased FC between the left orbitofrontal cortex (OFC), visual association cortex and cerebellum and FC reductions between the right OFC and dorsal anterior cingulate cortex compared to those with no prior COVID-19 infection ( p < 0.05, from whole brain statistical parametric map analysis). Individuals with anosmia also showed greater CBF in the left insula, hippocampus and ventral posterior cingulate when compared to those with resolved anosmia ( p < 0.05, from whole brain statistical parametric map analysis)., Interpretation: This work describes, for the first time to our knowledge, functional differences within olfactory areas and regions involved in sensory processing and cognitive functioning. This work identifies key areas for further research and potential target sites for therapeutic strategies., Funding: This study was funded by the National Institute for Health and Care Research and supported by the Queen Square Scanner business case., Competing Interests: XG is a founder, shareholder and CEO of Gold Standard Phantoms, a company providing calibration and test objects for MRI. ED’A received funding from the H2020 Research and Innovation Action Grants Human Brain Project 785907 and 945539 (SGA2 and SGA3), and from the MNL Project “Local Neuronal Microcircuits” of the Centro Fermi (Rome, Italy). CGWK received funding from the H2020 Research and Innovation Action Grants Human Brain Project 945539 (SGA3), from the MS Society (#77), from Wings for Life (#169111), BRC (#BRC704/CAP/CGW), MRC (#MR/S026088/1), Ataxia UK. CGWK is a shareholder in Queen Square Analytics Ltd. RLB reports receiving consulting fees from Pfizer, Eli-Lilly, Gila Therapeutics Inc., and ViiV Healthcare and consulting fees, lecture fees from Novo Nordisk and participating in clinical trials for Novo Nordisk. RLB receives National Institute for Health and Care Research Professorship funding RP-2015-06-005 and JW is funded under this funding too. JM receives UCL/UCLH National Institute for Health and Care Research BRC funding., (© 2023 The Authors.)
- Published
- 2023
- Full Text
- View/download PDF
45. Patterns of inflammation, microstructural alterations, and sodium accumulation define multiple sclerosis subtypes after 15 years from onset.
- Author
-
Ricciardi A, Grussu F, Kanber B, Prados F, Yiannakas MC, Solanky BS, Riemer F, Golay X, Brownlee W, Ciccarelli O, Alexander DC, and Gandini Wheeler-Kingshott CAM
- Abstract
Introduction: Conventional MRI is routinely used for the characterization of pathological changes in multiple sclerosis (MS), but due to its lack of specificity is unable to provide accurate prognoses, explain disease heterogeneity and reconcile the gap between observed clinical symptoms and radiological evidence. Quantitative MRI provides measures of physiological abnormalities, otherwise invisible to conventional MRI, that correlate with MS severity. Analyzing quantitative MRI measures through machine learning techniques has been shown to improve the understanding of the underlying disease by better delineating its alteration patterns., Methods: In this retrospective study, a cohort of healthy controls (HC) and MS patients with different subtypes, followed up 15 years from clinically isolated syndrome (CIS), was analyzed to produce a multi-modal set of quantitative MRI features encompassing relaxometry, microstructure, sodium ion concentration, and tissue volumetry. Random forest classifiers were used to train a model able to discriminate between HC, CIS, relapsing remitting (RR) and secondary progressive (SP) MS patients based on these features and, for each classification task, to identify the relative contribution of each MRI-derived tissue property to the classification task itself., Results and Discussion: Average classification accuracy scores of 99 and 95% were obtained when discriminating HC and CIS vs. SP, respectively; 82 and 83% for HC and CIS vs. RR; 76% for RR vs. SP, and 79% for HC vs. CIS. Different patterns of alterations were observed for each classification task, offering key insights in the understanding of MS phenotypes pathophysiology: atrophy and relaxometry emerged particularly in the classification of HC and CIS vs. MS, relaxometry within lesions in RR vs. SP, sodium ion concentration in HC vs. CIS, and microstructural alterations were involved across all tasks., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Ricciardi, Grussu, Kanber, Prados, Yiannakas, Solanky, Riemer, Golay, Brownlee, Ciccarelli, Alexander and Gandini Wheeler-Kingshott.)
- Published
- 2023
- Full Text
- View/download PDF
46. Differentiating Multiple Sclerosis From AQP4-Neuromyelitis Optica Spectrum Disorder and MOG-Antibody Disease With Imaging.
- Author
-
Cortese R, Prados Carrasco F, Tur C, Bianchi A, Brownlee W, De Angelis F, De La Paz I, Grussu F, Haider L, Jacob A, Kanber B, Magnollay L, Nicholas RS, Trip A, Yiannakas M, Toosy AT, Hacohen Y, Barkhof F, and Ciccarelli O
- Subjects
- Humans, Aquaporin 4, Myelin-Oligodendrocyte Glycoprotein, Retina pathology, Autoantibodies, Neuromyelitis Optica, Multiple Sclerosis diagnostic imaging, Multiple Sclerosis, Relapsing-Remitting diagnostic imaging
- Abstract
Background and Objectives: Relapsing-remitting multiple sclerosis (RRMS), aquaporin-4 antibody-positive neuromyelitis optica spectrum disorder (AQP4-NMOSD), and myelin oligodendrocyte glycoprotein antibody-associated disease (MOGAD) may have overlapping clinical features. There is an unmet need for imaging markers that differentiate between them when serologic testing is unavailable or ambiguous. We assessed whether imaging characteristics typical of MS discriminate RRMS from AQP4-NMOSD and MOGAD, alone and in combination., Methods: Adult, nonacute patients with RRMS, APQ4-NMOSD, and MOGAD and healthy controls were prospectively recruited at the National Hospital for Neurology and Neurosurgery (London, United Kingdom) and the Walton Centre (Liverpool, United Kingdom) between 2014 and 2019. They underwent conventional and advanced brain, cord, and optic nerve MRI and optical coherence tomography (OCT)., Results: A total of 91 consecutive patients (31 RRMS, 30 APQ4-NMOSD, and 30 MOGAD) and 34 healthy controls were recruited. The most accurate measures differentiating RRMS from AQP4-NMOSD were the proportion of lesions with the central vein sign (CVS) (84% vs 33%, accuracy/specificity/sensitivity: 91/88/93%, p < 0.001), followed by cortical lesions (median: 2 [range: 1-14] vs 1 [0-1], accuracy/specificity/sensitivity: 84/90/77%, p = 0.002) and white matter lesions (mean: 39.07 [±25.8] vs 9.5 [±14], accuracy/specificity/sensitivity: 78/84/73%, p = 0.001). The combination of higher proportion of CVS, cortical lesions, and optic nerve magnetization transfer ratio reached the highest accuracy in distinguishing RRMS from AQP4-NMOSD (accuracy/specificity/sensitivity: 95/92/97%, p < 0.001). The most accurate measures favoring RRMS over MOGAD were white matter lesions (39.07 [±25.8] vs 1 [±2.3], accuracy/specificity/sensitivity: 94/94/93%, p = 0.006), followed by cortical lesions (2 [1-14] vs 1 [0-1], accuracy/specificity/sensitivity: 84/97/71%, p = 0.004), and retinal nerve fiber layer thickness (RNFL) (mean: 87.54 [±13.83] vs 75.54 [±20.33], accuracy/specificity/sensitivity: 80/79/81%, p = 0.009). Higher cortical lesion number combined with higher RNFL thickness best differentiated RRMS from MOGAD (accuracy/specificity/sensitivity: 84/92/77%, p < 0.001)., Discussion: Cortical lesions, CVS, and optic nerve markers achieve a high accuracy in distinguishing RRMS from APQ4-NMOSD and MOGAD. This information may be useful in clinical practice, especially outside the acute phase and when serologic testing is ambiguous or not promptly available., Classification of Evidence: This study provides Class II evidence that selected conventional and advanced brain, cord, and optic nerve MRI and OCT markers distinguish adult patients with RRMS from AQP4-NMOSD and MOGAD., (Copyright © 2022 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the American Academy of Neurology.)
- Published
- 2023
- Full Text
- View/download PDF
47. Avoiding Unnecessary Biopsy after Multiparametric Prostate MRI with VERDICT Analysis: The INNOVATE Study.
- Author
-
Singh S, Rogers H, Kanber B, Clemente J, Pye H, Johnston EW, Parry T, Grey A, Dinneen E, Shaw G, Heavey S, Stopka-Farooqui U, Haider A, Freeman A, Giganti F, Atkinson D, Moore CM, Whitaker HC, Alexander DC, Panagiotaki E, and Punwani S
- Subjects
- Aged, Humans, Male, Biopsy, Image-Guided Biopsy methods, Magnetic Resonance Imaging methods, Prostate diagnostic imaging, Prostate pathology, Prostate-Specific Antigen, Retrospective Studies, Middle Aged, Multiparametric Magnetic Resonance Imaging, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology
- Abstract
Background In men suspected of having prostate cancer (PCa), up to 50% of men with positive multiparametric MRI (mpMRI) findings (Prostate Imaging Reporting and Data System [PI-RADS] or Likert score of 3 or higher) have no clinically significant (Gleason score ≤3+3, benign) biopsy findings. Vascular, Extracellular, and Restricted Diffusion for Cytometry in Tumor (VERDICT) MRI analysis could improve the stratification of positive mpMRI findings. Purpose To evaluate VERDICT MRI, mpMRI-derived apparent diffusion coefficient (ADC), and prostate-specific antigen density (PSAD) as determinants of clinically significant PCa (csPCa). Materials and Methods Between April 2016 and December 2019, men suspected of having PCa were prospectively recruited from two centers and underwent VERDICT MRI and mpMRI at one center before undergoing targeted biopsy. Biopsied lesion ADC, lesion-derived fractional intracellular volume (FIC), and PSAD were compared between men with csPCa and those without csPCa, using nonparametric tests subdivided by Likert scores. Area under the receiver operating characteristic curve (AUC) was calculated to test diagnostic performance. Results Among 303 biopsy-naive men, 165 study participants (mean age, 65 years ± 7 [SD]) underwent targeted biopsy; of these, 73 had csPCa. Median lesion FIC was higher in men with csPCa (FIC, 0.53) than in those without csPCa (FIC, 0.18) for Likert 3 ( P = .002) and Likert 4 (0.60 vs 0.28, P < .001) lesions. Median lesion ADC was lower for Likert 4 lesions with csPCa (0.86 × 10
-3 mm2 /sec) compared with lesions without csPCa (1.12 × 10-3 mm2 /sec, P = .03), but there was no evidence of a difference for Likert 3 lesions (0.97 × 10-3 mm2 /sec vs 1.20 × 10-3 mm2 /sec, P = .09). PSAD also showed no difference for Likert 3 (0.17 ng/mL2 vs 0.12 ng/mL2 , P = .07) or Likert 4 (0.14 ng/mL2 vs 0.12 ng/mL2 , P = .47) lesions. The diagnostic performance of FIC (AUC, 0.96; 95% CI: 0.93, 1.00) was higher ( P = .02) than that of ADC (AUC, 0.85; 95% CI: 0.79, 0.91) and PSAD (AUC, 0.74; 95% CI: 0.66, 0.82) for the presence of csPCa in biopsied lesions. Conclusion Lesion fractional intracellular volume enabled better classification of clinically significant prostate cancer than did apparent diffusion coefficient and prostate-specific antigen density. Clinical trial registration no. NCT02689271 © RSNA, 2022 Online supplemental material is available for this article.- Published
- 2022
- Full Text
- View/download PDF
48. Recent advances in the longitudinal segmentation of multiple sclerosis lesions on magnetic resonance imaging: a review.
- Author
-
Diaz-Hurtado M, Martínez-Heras E, Solana E, Casas-Roma J, Llufriu S, Kanber B, and Prados F
- Subjects
- Cross-Sectional Studies, Disease Progression, Humans, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods, Magnetic Resonance Spectroscopy, Multiple Sclerosis diagnostic imaging, Multiple Sclerosis pathology
- Abstract
Multiple sclerosis (MS) is a chronic autoimmune disease characterized by demyelinating lesions that are often visible on magnetic resonance imaging (MRI). Segmentation of these lesions can provide imaging biomarkers of disease burden that can help monitor disease progression and the imaging response to treatment. Manual delineation of MRI lesions is tedious and prone to subjective bias, while automated lesion segmentation methods offer objectivity and speed, the latter being particularly important when analysing large datasets. Lesion segmentation can be broadly categorised into two groups: cross-sectional methods, which use imaging data acquired at a single time-point to characterise MRI lesions; and longitudinal methods, which use imaging data from the same subject acquired at two or more different time-points to characterise lesions over time. The main objective of longitudinal segmentation approaches is to more accurately detect the presence of new MS lesions and the growth or remission of existing lesions, which may be effective biomarkers of disease progression and treatment response. This paper reviews articles on longitudinal MS lesion segmentation methods published over the past 10 years. These are divided into traditional machine learning methods and deep learning techniques. PubMed articles using longitudinal information and comparing fully automatic two time point segmentations in any step of the process were selected. Nineteen articles were reviewed. There is an increasing number of deep learning techniques for longitudinal MS lesion segmentation that are promising to help better understand disease progression., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2022
- Full Text
- View/download PDF
49. Remyelination varies between and within lesions in multiple sclerosis following bexarotene.
- Author
-
Brown JWL, Prados F, Altmann DR, Kanber B, Stutters J, Cunniffe NG, Jones JL, Georgieva ZG, Needham EJ, Daruwalla C, Wheeler-Kingshott CG, Connick P, Chandran S, Franklin R, MacManus D, Samson R, Coles A, and Chard D
- Subjects
- Bexarotene pharmacology, Brain pathology, Humans, Magnetic Resonance Imaging, Multiple Sclerosis drug therapy, Multiple Sclerosis pathology, Remyelination
- Abstract
Objective: In multiple sclerosis chronic demyelination is associated with axonal loss, and ultimately contributes to irreversible progressive disability. Enhancing remyelination may slow, or even reverse, disability. We recently trialled bexarotene versus placebo in 49 people with multiple sclerosis. While the primary MRI outcome was negative, there was converging neurophysiological and MRI evidence of efficacy. Multiple factors influence lesion remyelination. In this study we undertook a systematic exploratory analysis to determine whether treatment response - measured by change in magnetisation transfer ratio - is influenced by location (tissue type and proximity to CSF) or the degree of abnormality (using baseline magnetisation transfer ratio and T1 values)., Methods: We examined treatment effects at the whole lesion level, the lesion component level (core, rim and perilesional tissues) and at the individual lesion voxel level., Results: At the whole lesion level, significant treatment effects were seen in GM but not WM lesions. Voxel-level analyses detected significant treatment effects in WM lesion voxels with the lowest baseline MTR, and uncovered gradients of treatment effect in both WM and CGM lesional voxels, suggesting that treatment effects were lower near CSF spaces. Finally, larger treatment effects were seen in the outer and surrounding components of GM lesions compared to inner cores., Interpretation: Remyelination varies markedly within and between lesions. The greater remyelinating effect in GM lesions is congruent with neuropathological observations. For future remyelination trials, whole GM lesion measures require less complex post-processing compared to WM lesions (which require voxel level analyses) and markedly reduce sample sizes., (© 2022 The Authors. Annals of Clinical and Translational Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association.)
- Published
- 2022
- Full Text
- View/download PDF
50. A generalized deep learning network for fractional anisotropy reconstruction: Application to epilepsy and multiple sclerosis.
- Author
-
Gaviraghi M, Ricciardi A, Palesi F, Brownlee W, Vitali P, Prados F, Kanber B, and Gandini Wheeler-Kingshott CAM
- Abstract
Fractional anisotropy (FA) is a quantitative map sensitive to microstructural properties of tissues in vivo and it is extensively used to study the healthy and pathological brain. This map is classically calculated by model fitting (standard method) and requires many diffusion weighted (DW) images for data quality and unbiased readings, hence needing the acquisition time of several minutes. Here, we adapted the U-net architecture to be generalized and to obtain good quality FA from DW volumes acquired in 1 minute. Our network requires 10 input DW volumes (hence fast acquisition), is robust to the direction of application of the diffusion gradients (hence generalized), and preserves/improves map quality (hence good quality maps). We trained the network on the human connectome project (HCP) data using the standard model-fitting method on the entire set of DW directions to extract FA (ground truth). We addressed the generalization problem, i.e., we trained the network to be applicable, without retraining, to clinical datasets acquired on different scanners with different DW imaging protocols. The network was applied to two different clinical datasets to assess FA quality and sensitivity to pathology in temporal lobe epilepsy and multiple sclerosis, respectively. For HCP data, when compared to the ground truth FA, the FA obtained from 10 DW volumes using the network was significantly better ( p <10
-4 ) than the FA obtained using the standard pipeline. For the clinical datasets, the network FA retained the same microstructural characteristics as the FA calculated with all DW volumes using the standard method. At the subject level, the comparison between white matter (WM) ground truth FA values and network FA showed the same distribution; at the group level, statistical differences of WM values detected in the clinical datasets with the ground truth FA were reproduced when using values from the network FA, i.e., the network retained sensitivity to pathology. In conclusion, the proposed network provides a clinically available method to obtain FA from a generic set of 10 DW volumes acquirable in 1 minute, augmenting data quality compared to direct model fitting, reducing the possibility of bias from sub-sampled data, and retaining FA pathological sensitivity, which is very attractive for clinical applications., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Gaviraghi, Ricciardi, Palesi, Brownlee, Vitali, Prados, Kanber and Gandini Wheeler-Kingshott.)- Published
- 2022
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.