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It is widely recognized that heterogeneous environments promote biodiversity. Consequently, we investigated whether heterogeneous environments influence the diversity of ground‐dwelling beetles within a well‐managed conifer plantation forest. We collected carabid beetles, and necrophagous silphid and dung beetles (necrophagous beetles) using pitfall traps at 37 sites with or without fish meat bait. The result of a two‐dimensional principal component analysis (PCA) utilizing environmental indices measured at each site suggested that the environmental heterogeneity depended on the survival density of planted conifers, serving as an indicator of historical gap formation levels. Gaps populated by invading broadleaved trees exhibited low canopy opening percentages and understory cover degrees, while those filled by the growth of planted conifers displayed the opposite conditions. The presence of bait had a negligible impact on carabid beetles but significantly influenced necrophagous beetles. No significant relationships were found between the scores of PCA components and the beetle species richness, suggesting that a heterogeneous environment does not increase the beetle species diversities. However, significant relationships were observed with the scores on nonmetric multidimensional scaling axes, indicating that a heterogeneous environment contributes to the complexity of beetle assemblages. The most dominant carabid, Synuchus cycloderus, was abundant in areas where historical gap formation was thought to be more prevalent. Among necrophagous beetles, Pherotrupes laevistriatus and Panelus parvulus preferred habitats with darker environments, in contrast to Onthophagus fodiens and O. nitidus. This study will aid in developing forestry practices aimed at conserving specific ground‐dwelling beetle species within conifer plantations. [ABSTRACT FROM AUTHOR]

The Japanese subalpine zone is dominated by an ecologically important forest biome, subalpine coniferous forest, constituting a distinct assemblage of cold‐tolerant angiosperm and conifer species. While being relatively intact compared to other forest biomes in Japan, subalpine coniferous forests are under significant threat from deer browsing, global warming and small population size effects. However, there is a severe lack of genetic resources available for this biome's major constituent plant species. This study aimed to develop chloroplast genome‐based genetic resources for 12 widespread subalpine tree and shrub species (7 angiosperms and 5 conifers) via genome skimming of whole‐genomic DNA using short reads (100–150 bp in length). For 10 species, whole chloroplast genomes were assembled via de novo‐based methods from 4 to 10 individuals per species sampled from across their ranges in Japan and, for non‐Japanese endemic species, elsewhere in northeast Asia. A total of 566 single nucleotide polymorphisms for Japanese samples and 768 for all samples (varying from 2 to 202 per species) were identified which were distributed in geographically restricted lineages in most species. In addition, between 9 and 58 polymorphic simple sequence repeat regions were identified per species. For two Ericaceae species (Rhododendron brachycarpum and Vaccinium vitis‐idaea) characterised by large chloroplast genomes, de novo assembly failed, but single nucleotide polymorphisms could be identified using reference mapping. These data will be useful for genetic studies of species taxonomic relationships, investigating phylogeographic patterns within species, developing chloroplast‐based markers for conservation genetic studies and has potential application for studies of environmental and ancient DNA. [ABSTRACT FROM AUTHOR]

Warm‐edge populations, that is, those usually small and isolated populations at the boundary of species maximum temperature range limit, are of particular scientific and conservation interest. This is especially the case for those that have long been geographically isolated, possibly through multiple glaciations, as they can contribute significantly to species' overall genetic diversity. However, distinguishing between glacial relict and more recently established warm‐edge populations is difficult especially in the absence of a continuous fossil record. In this study, we investigate the origin of anomalously low‐elevation warm‐edge populations of the dominant cool temperate Japanese tree Fagus crenata in the northeast Kanto (NEK) region. We sought to determine whether these populations are glacial relicts or, rather, were established via dispersal in the Holocene using chloroplast and nuclear genetic data, species distribution modeling and comparison with populations in a well‐established glacial refugia (south‐central Kyushu [SCK]) and of mid‐late Holocene age (southern Hokkaido [SH]). Whole chloroplast genome "mining" revealed a similar amount of haplotype diversity in NEK and SCK while there was no chloroplast variation in SH. Populations in NEK, particularly the lowest elevation sites, harbored unique haplotypes providing evidence for their persistence since the Last Glacial Maximum as supported by species distribution models under two of three general circulation models. NEK populations also lacked the genetic signatures of recent expansion that characterize the most northern‐edge populations in SH. We conclude that warm‐edge populations in NEK are most likely relicts of glacial refugia and should be given high priority for conservation. [ABSTRACT FROM AUTHOR]

The aim of this study was to clarify the structure and regeneration status of mixed beech (Fagus crenata) forest on Mt. Toishi in the Sangun mountain range in northern Kyushu, a relatively low‐latitude region in Japan, with emphasis on forests at lower elevations. We focused on a mixed beech forest at a low elevation of Mt. Toishi and compared the forest structure of the target stands, including tree species and size, with the forest structure near the peaks of Mt. Toishi and Mt. Sangun. Deciduous broad‐leaf trees were dominant near the peaks, while evergreen broad‐leaf trees dominated at lower elevations, whereas the relative dominance of beech trees was not significantly different. Near the peaks, the number of large‐diameter beech trees forming the canopy decreased, and small‐diameter trees were present. The proportion of small‐sized trees was lower in the low‐elevation forest area than in the forest area near the peak. Even at lower elevations, juvenile beech trees grew in limited areas on steep slopes along forest roads. These sites suggested that regeneration of beech populations is possible even at low elevation. [ABSTRACT FROM AUTHOR]

Nuclear microsatellite markers were developed for the two Tsuga species native to the Japanese Archipelago, Tsuga diversifolia and T. sieboldii, and a population with genetic affinities to T. diversifolia on Ulleung Island, Korea. Tsuga diversifolia and T. sieboldii are widespread dominant trees of temperate and subalpine forests in Japan but to date no genetic markers have been developed for these species. Fifteen polymorphic loci were developed and characterized, of which 14 are reliably amplified in each taxon. Across both species and the Ulleung Island population, the number of alleles per locus ranged from 3 to 26 (average = 13.93) and observed heterozygosity ranged from 0.005 to 0.935 (average = 0.535). In addition, all 15 loci were successfully amplified in a single accession of the Chinese species, T. chinensis. These markers will be useful for investigating the species' biogeography, range-wide genetic diversity, conservation genetic issues and potential for hybridisation. [ABSTRACT FROM AUTHOR]