Search

Your search keyword '"Karabitsina, Yulia I."' showing total 12 results
Start Over Author "Karabitsina, Yulia I."
12 results on '"Karabitsina, Yulia I."'

2. Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Published
2021
Full Text
View/download PDF

4. Additional file 10 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Subjects
lipids (amino acids, peptides, and proteins)
Abstract

Additional file 10: FigureS10. GWAS Manhattan plots for (a) Stearic acid; (b) Nonadecanoic acid; (c) Eicosenoic acid; (d) Docosanoic acid; (e) Tetracosanoic acid; (f) Nervonic acid; (g) Oleic acid; (h) Linoleic acid; (i) Ratio between oleic and linoleic acids. FDR and Bonferroni thresholds are shown by blue and red, respectively.

Published
2021
Full Text
View/download PDF

5. Additional file 5 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Abstract

Additional file 5: FigureS5. (A) Multidimensional scaling plot (two dimensions, 1 - Spearman correlation coefficient between TAGs abundances measured using LC-MS with dilution 1:25 was used as distance). One sample is shown by one point; accessions are shown by different colors; different years are shown by points of different shapes. (B) Minus log10 p-values for the differences between lines (ANOVA) are shown, TAGs are ordered by p-value increase from top left to bottom right. Bonferroni adjusted 0.05 significance level is shown by red line; (C-G) abundances of five selected TAGs are shown across lines and years. Each point represents 1 sample, point shapes, and colors as in (A), lines show per-year averages. This figure complements main Fig. 3.

Published
2021
Full Text
View/download PDF

6. Additional file 9 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Abstract

Additional file 9: FigureS9. Replication experiment on 6 accessions. (Left) Distributions of FAs (top) or TAGs (middle and bottom) by percentages of variance explained by genotype (G), environment (year, E), interaction between genotype and environment (G:E) or percentage of residual variance. Distribution of the same percentages divided by number of degrees of freedom of corresponding factor are shown on the right.

Published
2021
Full Text
View/download PDF

7. Additional file 6 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Abstract

Additional file 6: FigureS6. Replication experiment on 6 accessions: relative abundances of all the fatty acids with significant (FDR

Published
2021
Full Text
View/download PDF

8. Additional file 3 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Abstract

Additional file 3: FigureS3. Joint principal component analysis of sunflower accessions genotyped in this study and in Hübner (2019) based on 2345 shared SNPs. The first and the second (A) or the first and the third (B) PCs are shown. Each dot corresponds to a plant accession. Colors indicate the origin (wild/line/landrace). Shapes indicate species.

Published
2021
Full Text
View/download PDF

9. Additional file 8 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Abstract

Additional file 8: FigureS8. Replication experiment on 6 genotypes: relative abundances of all TAGs detected by LC-MS with dilution 1:25 with significant (FDR

Published
2021
Full Text
View/download PDF

10. Additional file 7 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Abstract

Additional file 7: FigureS7. Replication experiment on 6 genotypes: relative abundances of all TAGs detected by LC-MS with dilution 1:3 with significant (FDR

Published
2021
Full Text
View/download PDF

11. Additional file 2 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Abstract

Additional file 2: FigureS2. Linkage disequilibrium (LD) decay plot. (A) Genome-wide LD. Gray dots correspond to a SNP pair, y-axis show r2 between two SNPs calculated using whole dataset. SNP pairs with distance less than 5 Mb are shown. (B) LD per each chromosome. Lines correspond to loess curves; 95% confidence intervals are shown by shades.

Published
2021
Full Text
View/download PDF

12. Additional file 4 of Genotyping and lipid profiling of 601 cultivated sunflower lines reveals novel genetic determinants of oil fatty acid content

Author

Chernova, Alina I., Gubaev, Rim F., Singh, Anupam, Sherbina, Katrina, Goryunova, Svetlana V., Martynova, Elena U., Goryunov, Denis V., Boldyrev, Stepan V., Vanyushkina, Anna A., Anikanov, Nikolay A., Stekolshchikova, Elena A., Yushina, Ekaterina A., Demurin, Yakov N., Mukhina, Zhanna M., Gavrilova, Vera A., Anisimova, Irina N., Karabitsina, Yulia I., Alpatieva, Natalia V., Chang, Peter L., Khaitovich, Philipp, Mazin, Pavel V., and Nuzhdin, Sergey V.

Abstract

Additional file 4 (A) Multidimensional scaling plot (two dimensions, 1 - Spearman correlation coefficient between TAGs abundances measured using LC-MS with dilution 1:3 was used as distance). One sample is shown by one point; accessions are shown by different colors; different years are shown by points of different shapes. (B) Minus log10 p-values for the differences between lines (ANOVA) are shown, TAGs are ordered by p-value increase from top left to bottom right. Bonferroni adjusted 0.05 significance level is shown by red line; (C-G) abundances of five selected TAGs are shown across lines and years. Each point represents 1 sample, point shapes, and colors as in (A), lines show per-year averages. This figure complements main Fig. 3.

Published
2021
Full Text
View/download PDF

Catalog

Books, media, physical & digital resources
See catalog results