108 results on '"Karen W. Hughes"'
Search Results
2. Metacampanella gen. nov.: The Campanella dendrophora complex
- Author
-
Ronald H. Petersen and Karen W. Hughes
- Subjects
Basidiomycota ,Marasmiaceae ,new species ,new genus ,taxonomy ,Biology (General) ,QH301-705.5 ,Microbiology ,QR1-502 - Abstract
ABSTRACTMetacampanella is proposed as a new genus in Family Marasmiaceae to accommodate a small group of six species morphologically resembling Tetrapyrgos or Campanella but molecularly distinct from both genera. Newly described taxa include M. costaricensis, M. sinecystidia, and M. dendrophora f. washingtonensis; species epithets transferred are M. caesia, M. dendrophora, M. olivaceonigra, and M. subdendrophora. Members of this complex habitually fruit on dead monocot stems and in one case, dead dicot wood. A comparison of nrITS sequences deposited in GenBank indicates that some members of Metacampanella include or are related to grass endophytes. Metacampanella appears to be global in distribution.
- Published
- 2024
- Full Text
- View/download PDF
3. Two additional species of Gymnopus (Euagarics, Basidiomycotina)
- Author
-
Ronald H. Petersen and Karen W. Hughes
- Subjects
Botany ,QK1-989 - Abstract
For more than a decade, a combination of molecular phylogenetic analyses and morphological characterisation has led to a renovation of the Omphalotaceae, especially of Gymnopus sensu lato. Numerous new genera have been proposed, but Gymnopus sensu stricto has also seen an accretion of species and species complexes. In this manuscript, two species are added to Gymnopus sensu stricto within Section Androsacei.
- Published
- 2019
- Full Text
- View/download PDF
4. An investigation on Mycetinis (Euagarics, Basidiomycota)
- Author
-
Ronald H. Petersen and Karen W. Hughes
- Subjects
Botany ,QK1-989 - Abstract
Molecular analyses have revealed a clade which equates with the genus name Mycetinis Earle. An overall survey of this genus, however, has not been forthcoming. The current study summarizes taxa which are placed in Mycetinis based on morphological and/or molecular data. Fifteen taxa are accepted: Mycetinis scorodonius f. diminutivus and Mycetinis yunnanensis are proposed as new, while Mycetinis cinnamomeus, Mycetinis olidus, Mycetinis prasiosmus, Mycetinis subalpinus and Myctinis virgultorum are newly recombined binomials. Phylogenies based on molecular data show overall disposition in Omphalotaceae, Gymnopus and allied genera, and taxa of Mycetinis.
- Published
- 2017
- Full Text
- View/download PDF
5. In Vitro Observations of the Interactions between Pholiota carbonaria and Polytrichum commune and Its Potential Environmental Relevance
- Author
-
Daniel B. Raudabaugh, Daniel G. Wells, Patrick B. Matheny, Karen W. Hughes, Malcolm Sargent, Teresa Iturriaga, and Andrew N. Miller
- Subjects
agaricales ,endophytes ,fungal–bryophyte ecology ,pyrophilous fungi ,wildfire ,Science - Abstract
Wildfires play a critical role in maintaining biodiversity and shaping ecosystem structure in fire-prone regions, and successional patterns involving numerous plant and fungal species in post-fire events have been elucidated. Evidence is growing to support the idea that some post-fire fungi can form endophytic/endolichenic relationships with plants and lichens. However, no direct observations of fire-associated fungal–moss interactions have been visualized to date. Therefore, physical interactions between a post-fire fungus, Pholiota carbonaria, and a moss, Polytrichum commune, were visually examined under laboratory conditions. Fungal appressoria were visualized on germinating spores and living protonemata within two weeks of inoculation in most growth chambers. Appressoria were pigmented, reddish gold to braun, and with a penetration peg. Pigmented, reddish gold to braun fungal hyphae were associated with living tissue, and numerous mature rhizoids contained fungal hyphae at six months. Inter-rhizoidal hyphae were pigmented and reddish gold to braun, but no structures were visualized on mature gametophyte leaf or stem tissues. Based on our visual evidence and previous work, we provide additional support for P. carbonaria having multiple strategies in how it obtains nutrients from the environment, and provide the first visual documentation of these structures in vitro.
- Published
- 2021
- Full Text
- View/download PDF
6. Corrigenda for: 'Micromphale sect. Perforantia (Agaricales, Basidiomycetes); Expansion and phylogenetic placement' published in MycoKeys, doi: 10.3897/mycokeys.18.10007
- Author
-
Ronald H. Petersen and Karen W. Hughes
- Subjects
Botany ,QK1-989 - Abstract
None
- Published
- 2017
- Full Text
- View/download PDF
7. Cloning of ribosomal ITS PCR products creates frequent, non-random chimeric sequences – a test involving heterozygotes between Gymnopus dichrous taxa I and II
- Author
-
Karen W. Hughes, Samuel D. Morris, and Ana Reboredo Segovia
- Subjects
Botany ,QK1-989 - Abstract
Gymnopus dichrous exists in the southern Appalachians (USA) as two distinct entities with essentially identical nuclear ribosomal ITS1 sequences but differing ITS2 and LSU sequences (for convenience, called G. dichrous I and II). F1 ITS heterozygotes between the two are routinely collected from nature. Cloning of ITS PCR products from F1 heterozygotes produced sequences of both parental haplotypes but also numerous chimeric sequences (21.9%). The location of template switching was non-random leading to recovery of the same chimera several times and the chimeric region varied from 45bp to 300bp. By comparison, single-basidiospore isolates from heterozygote F1 fruitbodies showed no recombinant haplotypes within the ITS + LSU span and clones derived from P1 homozygotes were identical to the P1 parent. Thus, chimeric sequences are likely an artifact of the PCR-cloning process and not a consequence of natural recombination events found in nature, nor are they due to hidden existing variation within the ribosomal repeat. Chimeras and PCR-induced mutations are common in cloned PCR products and may result in incorrect sequence information in public databases.
- Published
- 2015
- Full Text
- View/download PDF
8. Transatlantic disjunction in fleshy fungi III: Gymnopus confluens
- Author
-
Karen W. Hughes and Ronald H. Petersen
- Subjects
Botany ,QK1-989 - Abstract
Phylogeographic data indicate that DNA differences consistently exist between the North American and European allopatric populations of Gymnopus confluens. Conversely, pairing experiments show that collections from both populations were sexually compatible in vitro and detailed morphological examinations of numerous fresh and dried basidiomata do not produce qualitative differences. Percent ITS sequence divergence between Europe and North American collections of G. confluens was 3.25%. Species delineation metrics including Rosenberg’s PAB statistic, PID metrics, RRD (randomly distributed) and PTP (Poisson Tree Processes) gave mixed indications that North American and European populations were distinct at species rank. The North American populations are described as Gymnopus confluens subsp. campanulatus (Peck) R.H. Petersen.
- Published
- 2015
- Full Text
- View/download PDF
9. A global phylogenomic analysis of the shiitake genus Lentinula
- Author
-
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason C. Slot, Yuichi Sakamoto, Jacob L. Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco J. Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen W. Hughes, Juan L. Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris A. Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt LaButti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel T. Martínez, Yang Xiao, John G. Gibbons, Kazuhisa Terashima, Igor V. Grigoriev, David Hibbett, Ministerio de Ciencia e Innovación (España), Sierra-Patev, Sean, Min, Byoungnam, Naranjo-Ortíz, M. A., Looney, Bryan, Konkel, Zachary, Slot, Jason C., Steenwyk, J.L., Rokas, Antonis, Carro, Juan, Camarero, Susana, Ferreira, Patricia, Molpeceres, Gonzalo, Ruiz-Dueñas, F. J., Serrano, Ana, Henrissat, Bernard, Drula, Elodie, Hughes, K., Mata, Juan L., Ishikawa, Noemia K., Vargas-Isla, Ruby, Ushijima, Shuji, Donoghue, John, Ahrendt, Steven, Andreopoulos, William, He, Guifen, LaButti, Kurt M., Lipzen, Anna, Riley, Robert, Barry, Kerrie, Martínez, Ángel T., Xiao, Yang, Gibbons, John G., Grigoriev, Igor V., Hibbett, David S., Biodiversité et Biotechnologie Fongiques (BBF), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Architecture et fonction des macromolécules biologiques (AFMB), and Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
- Subjects
Domestication ,Multidisciplinary ,MESH: Lentinula ,Mushrooms ,Evolution ,[SDV]Life Sciences [q-bio] ,Fungi ,MESH: Phylogeny ,MESH: Thailand ,Population genomics ,MESH: Asia, Eastern - Abstract
10 p.-6 fig., Lentinula is a broadly distributed group of fungi that contains the cultivated shiitake mushroom, L. edodes. We sequenced 24 genomes representing eight described species and several unnamed lineages of Lentinula from 15 countries on four continents. Lentinula comprises four major clades that arose in the Oligocene, three in the Americas and one in Asia–Australasia. To expand sampling of shiitake mushrooms, we assembled 60 genomes of L. edodes from China that were previously published as raw Illumina reads and added them to our dataset. Lentinula edodes sensu lato (s. lat.) contains three lineages that may warrant recognition as species, one including a single isolate from Nepal that is the sister group to the rest of L. edodes s. lat., a second with 20 cultivars and 12 wild isolates from China, Japan, Korea, and the Russian Far East, and a third with 28 wild isolates from China, Thailand, and Vietnam. Two additional lineages in China have arisen by hybridization among the second and third groups. Genes encoding cysteine sulfoxide lyase (lecsl) and γ-glutamyl transpeptidase (leggt), which are implicated in biosynthesis of the organosulfur flavor compound lenthionine, have diversified in Lentinula. Paralogs of both genes that are unique to Lentinula (lecsl 3 and leggt 5b) are coordinately up-regulated in fruiting bodies of L. edodes. The pangenome of L. edodes s. lat. contains 20,308 groups of orthologous genes, but only 6,438 orthogroups (32%) are shared among all strains, whereas 3,444 orthogroups (17%) are found only in wild populations, which should be targeted for conservation., This research was supported by the NSF awards DEB-1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to D.H., the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation (cofinanced by FEDER funds) to F.J.R.-D., S.C., and A.T.M., grant PID2019-103901GB-I00 of the Spanish Ministry of Science and Innovation to P.F., and the NIH award R56AI146096 to A.R. J.L.S. and A.R. were supported by the HHMI and the Burroughs Wellcome Fund. The work (proposal: 10.46936/10.25585/60001048) conducted by the US Department of Energy JGI (https://ror.org/04xm1d337), a DOE Office of Science User Facility, was supported by the Office of Science of the US Department of Energy operated under contract no. DE-AC02-05CH11231.
- Published
- 2023
- Full Text
- View/download PDF
10. New species and records of Tricholoma (Agaricales: Tricholomataceae) sections Genuina and Megatricholoma from Costa Rica and United States
- Author
-
Clark L. Ovrebo, Roy E. Halling, Karen W. Hughes, and Michael Kuo
- Subjects
Plant Science ,Ecology, Evolution, Behavior and Systematics - Abstract
Species of Tricholoma sections Genuina and Megatricholoma are characterized by having pilei that are some shade of brown, and by white or yellow lamellae that also discolor some shade of brown. From Costa Rica in sect. Genuina, we describe as new T. luteopallidum, T. cacumense, and T. talamancense, and confirm the occurrence of Tricholoma stans, and from the United States describe as new Tricholoma brunneoluteum. Tricholoma roseoacerbum from sect. Megatricholoma is con-firmed for Costa Rica. Morphology as well as ITS sequences are employed to confirm the species’ identifications or circumscription of the new species.
- Published
- 2021
- Full Text
- View/download PDF
11. Collybiopsis and its type species, Co. ramealis
- Author
-
Karen W. Hughes and Ronald H. Petersen
- Subjects
Type species ,Botany ,Plant Science ,Biology ,biology.organism_classification ,Collybiopsis ,Ecology, Evolution, Behavior and Systematics - Abstract
Collybiopsis (Omphalotaceae, Agaricales) is accepted as the correct genus name for a large clade of non-typical Gymnopus. The type species of Collybiopsis (Agaricus ramealis) is shown to be a genetic complex. Collybiopsis filamentipes, Co. furtiva, Co. hasanskyensis, and Co. minor are proposed as spp. nov. and Co. californica as a stat. nov. Thirty-four additional Collybiopsis comb. nov. are proposed in Appendix I.
- Published
- 2021
- Full Text
- View/download PDF
12. New data on morphology, physiology, and geographical distribution of Lignomyces vetlinianus, its identity with Lentinus pilososquamulosus, and sufficient phylogenetic distance from Le. martianoffianus
- Author
-
Ivan V. Zmitrovich, Eugenia M. Bulakh, Nadezhda V. Psurtseva, Jaya Seelan Sathiya Seelan, Karen W. Hughes, and Ronald H. Petersen
- Subjects
0106 biological sciences ,0303 health sciences ,biology ,Holotype ,Zoology ,Morphology (biology) ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Agricultural and Biological Sciences (miscellaneous) ,030308 mycology & parasitology ,03 medical and health sciences ,Taxon ,Synonym (taxonomy) ,Lentinus ,Principle of Priority ,Type specimen ,Far East ,Ecology, Evolution, Behavior and Systematics - Abstract
Several specimens of putative Lentinus pilososquamulosus (including the type specimen) and Le. martianoffianus from Siberia and the Russian Far East associated with different hosts and collected during the past two decades were studied. Morphological examination of the studied specimens showed a close similarity to specimens of Lignomyces vetlinianus, a species originally described from Central Europe, but later discovered in European Russia, the Caucasus (Abkhazia), and the Urals. Cultures of Li. vetlinianus were characterized by growth and morphology, and their adaptation to various temperatures was evaluated. Growth rate of the strains at 25 °C varied between 1.2 and 3.1 mm/day; the majority of them could survive freezing at −20 °C and grew at temperature ranging from 5 to 35 °C. Comparative culture characters, mating compatibility, and ITS sequencing revealed that the specimens earlier identified as Le. pilososquamulosus or Far East Russian Le. martianoffianus (misapplied name) were identical to Li. vetlinianus. It was shown that the distribution area of Li. vetlinianus extends from Central Europe to the South (Caucasus) and through Western Siberia to the Russian Far East. Since several attempts of Le. pilososquamulosus holotype sequencing were unsuccessful, an epitype of this taxon, represented by a successfully sequenced old topotype specimen, was proposed. Le. pilososquamulosus is considered as synonym of Li. vetlinianus, following the principle of priority. A molecular study of true Le. martianoffianus (type specimen) supported its conspecificity with Panus lecomtei.
- Published
- 2021
- Full Text
- View/download PDF
13. Pyrophilous fungi detected after wildfires in the Great Smoky Mountains National Park expand known species ranges and biodiversity estimates
- Author
-
Karen W. Hughes, Daniel B. Raudabaugh, Rachel A. Swenie, Andrew S. Methven, Teresa Iturriaga, Thomas D. Bruns, P. Brandon Matheny, Kristine D. Johnson, Ronald H. Petersen, and Andrew N. Miller
- Subjects
0106 biological sciences ,Species complex ,Physiology ,Parks, Recreational ,Biodiversity ,DNA, Ribosomal ,010603 evolutionary biology ,01 natural sciences ,Wildfires ,030308 mycology & parasitology ,03 medical and health sciences ,Mycena galericulata ,Genetics ,Fruiting Bodies, Fungal ,Fire ecology ,DNA, Fungal ,Molecular Biology ,Pezizales ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,0303 health sciences ,biology ,Ecology ,National park ,Fungi ,Cell Biology ,General Medicine ,Pinus ,biology.organism_classification ,United States ,Coprinellus angulatus ,Pezizomycotina - Abstract
Following a late fall wildfire in 2016 in the Great Smoky Mountains National Park, pyrophilous fungi in burn zones were documented over a 2-y period with respect to burn severity and phenology. Nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) barcodes were obtained to confirm morphological evaluations. Forty-one taxa of Ascomycota and Basidiomycota were identified from burn sites and categorized as fruiting only in response to fire or fruiting enhanced by fire. Twenty-two species of Pezizales (Ascomycota) were among the earliest to form ascomata in severe burn zones, only one of which had previously been documented in the Great Smoky Mountains National Park. Nineteen species of Basidiomycota, primarily Agaricales, were also documented. Among these, only five species (Coprinellus angulatus, Gymnopilus decipiens, Lyophyllum anthracophilum, Pholiota carbonicola, and Psathyrella pennata) were considered to be obligate pyrophilous taxa, but fruiting of two additional taxa (Hygrocybe conica and Mycena galericulata) was clearly enhanced by fire. Laccaria trichodermophora was an early colonizer of severe burn sites and persisted through the winter of 2017 and into spring and summer of 2018, often appearing in close association with Pinus pungens seedlings. Fruiting of pyrophilous fungi peaked 4-6 mo post fire then diminished, but some continued to fruit up to 2.5 y after the fire. In all, a total of 27 previously unrecorded taxa were added to the All Taxa Biodiversity Inventory (ATBI) database (~0.9%). Most pyrophilous fungi identified in this study are either cosmopolitan or have a Northern Hemisphere distribution, but cryptic endemic lineages were detected in Anthracobia and Sphaerosporella. One new combination, Hygrocybe spadicea var. spadicea f. odora, is proposed.
- Published
- 2020
- Full Text
- View/download PDF
14. Secret lifestyles of pyrophilous fungi in the genus Sphaerosporella
- Author
-
P. Brandon Matheny, Stephanie N. Kivlin, Alexis Case, Karen W. Hughes, Teresa Iturriaga, Ronald H. Petersen, and Andrew N. Miller
- Subjects
0106 biological sciences ,endophytes ,Plant Science ,Plant Roots ,010603 evolutionary biology ,01 natural sciences ,Endophyte ,wildfire ,serotiny ,Pinus pungens ,Mycorrhizae ,Botany ,Genetics ,Pyronemataceae ,Life Style ,Research Articles ,Ecology, Evolution, Behavior and Systematics ,Mycelium ,Illumina dye sequencing ,biology ,fungi ,Fungi ,Pinus ,biology.organism_classification ,pyrophilous fungi ,Spore ,Ascocarp ,Seedlings ,Serotiny ,Research Article ,010606 plant biology & botany - Abstract
Premise Pyrophilous fungi form aboveground fruiting structures (ascocarps) following wildfires, but their ecology, natural history, and life cycles in the absence of wildfires are largely unknown. Sphaerosporella is considered to be pyrophilous. This study explores Sphaerosporella ascocarp appearance following a rare 2016 wildfire in the Great Smoky Mountains National Park (GSMNP), compares the timing of ascocarp formation with recovery of Sphaerosporella DNA sequences in soils, and explores the association of Sphaerosporella with post-fire Table Mountain pine (Pinus pungens) seedlings. Methods Burned sites in the GSMNP were surveyed for pyrophilous fungal ascocarps over 2 years. Ascocarps, mycorrhizae, and endophyte cultures were evaluated morphologically and by Sanger sequencing of the nuclear ribosomal ITS gene region (fungal barcode; Schoch et al., 2012). DNA from soil cores was subjected to Illumina sequencing. Results The timing and location of post-fire Sphaerosporella ascocarp formation was correlated with recovery of Sphaerosporella DNA sequences in soils. Genetic markers (fungal barcode) of Sphaerosporella were also recovered from mycorrhizal root tips and endophyte cultures from seedlings of Pinus pungens. Conclusions This study demonstrates that Sphaerosporella species, in the absence of fire, are biotrophic, forming both mycorrhizal and endophytic associations with developing Pinus pungens seedlings and may persist in nature in the absence of wildfire as a conifer symbiont. We speculate that Sphaerosporella may fruit only after the host plant is damaged or destroyed and that after wildfires, deep roots, needle endophytes, or heat-resistant spores could serve as a source of soil mycelium.
- Published
- 2020
- Full Text
- View/download PDF
15. Two new genera of gymnopoid/marasmioid euagarics
- Author
-
Karen W. Hughes and Ronald H. Petersen
- Subjects
Botany ,Plant Science ,Biology ,Ecology, Evolution, Behavior and Systematics - Abstract
Two new genera, Paramycetinis and Pseudomarasmius, are placed phylogenetically within the /omphalotaceae among genera allied with Gymnopus . Paramycetinis comprises two Antipodal taxa related to Mycetinis. Both Paramycetinis species are characterized by luxuriant rhizomorphs, with basidiomata arising occasionally as side branches but also separately from rhizomorphs. Pseudomarasmius accommodates four new species plus four others previously placed in Marasmius . Pseudomarasmius encompasses significant basidiomatal variation, but nrLSU- and ITS-based phylogenies support its taxa in a monophyletic clade that occupies a position related to some Rhodocollybia. All Pseudomarasmius and Paramycetinis species are described (or redescribed) and illustrated. Both genera exhibit characters also found in other superficially similar lineages, making non-molecular based diagnoses of genera in the /gymnopus/marasmiellus clades difficult.
- Published
- 2020
- Full Text
- View/download PDF
16. Global phylogeny of the Shiitake mushroom and related Lentinula species uncovers novel diversity and suggests an origin in the Neotropics
- Author
-
Nelson Menolli Jr., Santiago Sánchez-Ramírez, Marisol Sánchez-García, Chaoqun Wang, Sean Patev, Noemia Kazue Ishikawa, Juan L. Mata, Alexandre Rafael Lenz, Ruby Vargas-Isla, Lauren Liderman, Meriel Lamb, Mitchell Nuhn, Karen W. Hughes, Yang Xiao, and David S. Hibbett
- Subjects
Basidiomycota ,Shiitake Mushrooms ,Genetics ,Humans ,Lentinula ,Molecular Biology ,Brazil ,Phylogeny ,Ecology, Evolution, Behavior and Systematics - Abstract
Lentinula (Basidiomycota, Agaricales) includes the most widely cultivated mushroom in the world, Lentinula edodes, also known as shiitake (Japanese) or xiang-gu (Chinese). At present, nine species are recognized in the genus, based on morphology, mating criteria, and geographic distribution. However, analyses of internal transcribed spacers (ITS) of ribosomal RNA genes have suggested that there are cryptic lineages. We analyzed a global-scale phylogenetic dataset from 325 Lentinula individuals from 24 countries in Asia-Australasia and the Americas plus Madagascar, with 325 sequences of ITS, 80 LSU sequences, and 111 sequences of translation elongation factor (tef1-α) genes. We recovered 15 independent lineages (Groups 1-15) that may correspond to species. Lineages in Asia-Australasia (Groups 1-5) and the Americas plus Madagascar (Groups 6-15) formed sister clades. Four lineages are represented only by sequences from single individuals and require further molecular sampling, including L. aff. raphanica (Group 7), L. ixodes (Group 8), L. boryana (Group 12), and L. aff. aciculospora (Group 14). Groups 1 and 5 are here referred to L. edodes and L. aff. edodes, respectively. However, these groups most likely represent the same species and are only recognized as (unsupported) monophyletic lineages by maximum likelihood analyses of ITS alone. Other putative species resolved here include L. lateritia (Group 2), L. novae-zelandieae (Group 3), L. aff. lateritia (Group 4), L. raphanica (Group 6), L. aff. detonsa (Group 9), L. detonsa (Group 10), L. guzmanii sp. nov. (Group 11), L. aciculospora (Group 13), and L. madagasikarensis (Group 15). Groups 9-12 represent the "L. boryana complex". Molecular clock and historical biogeographic analyses suggest that the most recent common ancestor (MRCA) of Lentinula can be placed in the middle Oligocene, ca. 30 million years ago (Ma), and had a likely presence in neotropical America. The MRCA of Lentinula in the Americas and Madagascar lived ca. 22 Ma in the Neotropics and the MRCA of Lentinula in Asia-Australasia lived ca. 6 Ma in Oceania. Given the current knowledge about plate tectonics and paleoclimatic models of the last 30 Myr, our phylogenetic hypothesis suggests that the extant distribution of Lentinula is likely to have arisen, in large part, due to long-distance dispersal. Lentinula collections include at least four dubious taxa that need further taxonomic studies: L. reticeps from the USA (Ohio); L. guarapiensis from Paraguay; Lentinus puiggarii from Brazil (São Paulo); and "L. platinedodes" from Vietnam. Approximately ten of the fifteen Groups are reported on Fagaceae, which appears to be the ancestral substrate of Lentinula.
- Published
- 2022
- Full Text
- View/download PDF
17. Considerations and consequences of allowing DNA sequence data as types of fungal taxa
- Author
-
Harry Andersson, Annemieke Verbeken, László Nagy, E. S. Popov, L. B. Kalinina, Robert W. Barreto, Philippe Clerc, Alice Cruz Lima da Gerlach, Martin Grube, Xingzhong Liu, Jan Holec, Leticia Pacheco, Ursula Eberhardt, Blanca Imelda Arguello Sosa, Sigvard Svensson, Dania García Sánchez, Dmitry Ageev, Julia Pawłowska, Dennis E. Desjardin, Sara R. Noumeur, James C. Lendemer, Martin Kukwa, Viktor Papp, Isabel Salcedo, Maria Martha Dios, Richard W. Kerrigan, Reinhard Agerer, Jean-Michel Bellanger, Curtis R. Björk, Uwe Braun, François Valade, Víctor J. Rico, Ondřej Koukol, Ingvar Kärnefelt, Barbara Schulz, Attila Koszka, Gro Gulden, E. F. Malysheva, P. Brandon Matheny, Anton Shiryaev, Gerardo Mata, Mehdi Mehrabi, Taiga Kasuya, Tor Tønsberg, Ivana Kušan, Sergey Volobuev, Hans-Otto Baral, Esteri Ohenoja, Martin Kirchmair, Holger Thüs, Marian Jagers, Tuomo Niemelä, Begoña Aguirre-Hudson, J. Jennifer Luangsa-ard, Måns Svensson, Geir Mathiassen, Anna Rosling, Roy Watling, Meiriele da Silva, Eske De Crop, Ursula Peintner, Claudio Angelini, Mascha Hoffmeister, Vincent Demoulin, Miguel Ángel Ribes Ripoll, Paul Diederich, Takayuki Aoki, Nicolás Niveiro, Jiří Kout, Asunción Morte, Damien Ertz, Peter R. Johnston, Sergio P. Gorjón, Huzefa A. Raja, Machiel E. Noordeloos, Stellan Sunhede, László Lőkös, Cécile Gueidan, Gérald Gruhn, Bart Buyck, Roy E. Halling, Thomas Læssøe, Neven Matočec, Dan Mahoney, David Boertmann, Carlos G. Boluda, Vera Evenson, Ferenc Pál-Fám, Martin Westberg, Katriina Bendiksen, Jukka Vauras, Jacques Fournier, Martina Réblová, Gabriel Moreno, Yuri K. Novozhilov, Aída M. Vasco-Palacios, Leif Tibell, Deborah Jean Lodge, Miquel À. Pérez-De-Gregorio Capella, Rafael F. Castañeda-Ruiz, Olinto Liparini Pereira, Karl-Henrik Larsson, Michael Loizides, Edit Farkas, Mika Bendiksby, Tanja Böhning, Kadri Pärtel, Lucia Muggia, Brigitte Capoen, Raphaël Herve, Paul S. Dyer, Alberto Altés García, João Luís Baptista-Ferreira, Bella Grishkan, Paul Pirot, Karl Soop, Anna Bérešová-Guttová, Donald H. Pfister, A. Martyn Ainsworth, Uwe Lindemann, Alain Favre, Elisandro Ricardo Drechsler-Santos, André De Kesel, Mónica A.G. Otálora, Klaus Høiland, Ellen Larsson, Jens H. Petersen, Meike Piepenbring, Florent Boittin, James K. Mitchell, Zdeněk Palice, Franck Richard, Masoomeh Ghobad-Nejhad, Nils Hallenberg, Henry J. Beker, Gilles Corriol, Ronald H. Petersen, Melissa Palacio, Ana Esperanza Franco Molano, Mikael Jeppson, Gerardo Lucio Robledo, Egil Bendiksen, V. M. Kotkova, Håkon Holien, Marjo Dam, Pier Luigi Nimis, Yasmina Marin-Felix, Fernando Esteve-Raventós, Ave Suija, André Aptroot, Frank Dämmrich, Mitko Karadelev, Karen W. Hughes, Gladstone Alves da Silva, Emanuele Campo, Reinhard Berndt, Alona Yu. Biketova, Anders Nordin, Juan Manuel Velasco Santos, Josef Hafellner, Marco Thines, Bálint Dima, Grit Walther, Rodham E. Tulloss, Michael J. Richardson, Thomas W. Kuyper, Vladimír Kunca, Ann Bell, Adrien Taudière, Marc Stadler, Tania Raymundo, Per Vetlesen, Guillermo Muñoz González, Seppo Huhtinen, Irmgard Greilhuber, Øyvind Weholt, María Prieto Álvaro, Teun Boekhout, Dagmar Triebel, Mikhail P. Zhurbenko, Elena Voronina, Zdenko Tkalčec, Christian Lechat, Krzysztof Świerkosz, Joaquina María García-Martín, Johannes Z. Groenewald, Rubén Martínez-Gil, Pierre-Arthur Moreau, Evi Weber, Jan Borovička, Anna G. Fedosova, A Fraiture, Ewald Langer, Olga Morozova, Günter Saar, Carlos Lado, Vicent Calatayud, Juan Carlos Zamora, Ibai Olariaga, Francesco Bellù, Paolo Franchi, AnnaElise Jansen, Simón Fos, Matthias Lutz, Veera Tuovinen, István Nagy, Boris Assyov, J. Vladimir Sandoval-Sierra, Andrei Tsurykau, Alfredo Vizzini, Ivona Kautmanová, Mario Filippa, Beatrice Senn-Irlet, Sigisfredo Garnica, Josiane Santana Monteiro, Luis A. Parra, Svengunnar Ryman, Alan M. Fryday, Stip Helleman, Pedro W. Crous, Ruben De Lange, Alexander Ordynets, Giuliana Furci, Guilhermina Marques, Håkan Lindström, Joost A. Stalpers, Luis Quijada, Carlos A. Salvador Montoya, Marina Temina, Ruvishika S. Jayawardena, Miguel Ulloa Sosa, Joseph F. Ammirati, Heikki Kotiranta, Andreas Frisch, Martin Kříž, Teuvo Ahti, Tommy Knutsson, Tatyana Yu. Svetasheva, Luis Rubio Casas, Maria Alice Neves, Arne Thell, Soili Stenroos, Lajos Benedek, Sten Svantesson, Tine Grebenc, Patrícia Oliveira Fiuza, Tor Erik Brandrud, Flávia Rodrigues Barbosa, Annarosa Bernicchia, T. K. Arun Kumar, Massimo Candusso, Menno W. Boomsluiter, Wolfgang von Brackel, Petr Zehnálek, Hana Ševčíková, Toby Spribille, Vit Hubka, Trond Schumacher, Olivier Raspé, Tatiana Baptista Gibertoni, Esteve Llop, Åsa Kruys, Christoffer Bugge Harder, Klaus Siepe, Arne Aronsen, Andrew N. Miller, Laura Noemí Levin, Edgardo Albertó, Israel Pérez-Vargas, Hermann Voglmayr, Genevieve Gates, Bárbara De Madrignac Bonzi, Pradeep K. Divakar, Franz Berger, Natalia A. Ramírez, Per M. Jørgensen, Roland Moberg, Guy Marson, Gábor M. Kovács, Gérard Trichies, Sergio M. Salcedo Martínez, Juan Pablo Esquivel, Lynn Delgat, Juan de Dios Reyes García, Heidi Tamm, Vera Malysheva, Jan-Olof Tedebrand, Thomas Stjernegaard Jeppesen, Nico Dam, Régis Courtecuisse, Ireneia Melo, Pablo P. Daniëls, Péter Finy, Pamela Rodriguez-Flakus, Brian A. Perry, Brian Douglas, Ana M. Millanes Romero, Hans Josef Schroers, Pieter P. G. van den Boom, Slavomír Adamčík, Serena Lee, Marek Halama, Carlos Urcelay, Margarita Hernández-Restrepo, Philippe Callac, Oleg N. Shchepin, Vladimír Antonín, Gintaras Kantvilas, Else C. Vellinga, Ditte Bandini, Gernot Friebes, Roland Kirschner, Dániel G. Knapp, Boris Ivančević, Orlando Fabian Popoff, Clovis Douanla-Meli, Marcin Piątek, Alica Košuthová, Yury A. Rebriev, Helmut Mayrhofer, Alain Gardiennet, Karen Hansen, Kerry Knudsen, Otto Miettinen, Raquel Pino-Bodas, Shaun R. Pennycook, Beatriz Ortiz-Santana, Tatiana Bulyonkova, Jie Chen, Thomas Edison E. dela Cruz, Miroslav Kolařík, Witoon Purahong, Nicolas Van Vooren, Irwin M. Brodo, Esteban Benjamin Sir, Katerina Rusevska, Gerhard Rambold, Christian Printzen, Tim Baroni, Gary Laursen, Csaba Locsmándi, Javier Angel Etayo Salazar, Cristina Rodriguez-Caycedo, Irja Saar, Nadezhda V. Psurtseva, Takashi Shirouzu, Chayanard Phukhamsakda, Adam Flakus, Viacheslav Spirin, Sergi Santamaria, Matteo Garbelotto, Alan Orange, Mats Wedin, Andrew S. Methven, Huang Zhang, Guillaume Eyssartier, Michel Hairaud, Hatira Taskin, Luís Fernando Pascholati Gusmão, Carlos Manuel Pérez del Amo, Martin Bemmann, Ana Rosa Burgaz, Linas Kudzma, Didier Argaud, M. Catherine Aime, Alain Henriot, Walter M. Jaklitsch, Raúl Tena Lahoz, Violeta Atienza, Jorinde Nuytinck, Anna Kiyashko, Patinjareveettil Manimohan, József Geml, Cathy L. Cripps, Viktor Kučera, Francisco Kuhar, Kanad Das, Michael A. Castellano, Giovanni Consiglio, Ana Crespo, Armin Mešić, Leena Myllys, Einar Timdal, Ricardo Valenzuela Garza, Harold H. Burdsall, Enrico Bizio, Mohammad Sohrabi, Eugene Yurchenko, Linda Davies, Jacob Heilmann-Clausen, Patrice Lainé, Matteo Domenico Carbone, Aurelia Paz, Joaquim Carbó, Henning Knudsen, Thorsten Lumbsch, Caroline Hobart, Göran Thor, Bita Asgari, Matthias Lüderitz, Sanja Tibell, Ulf Arup, Geert Schmidt-Stohn, Urmas Kõljalg, Stefan Ekman, Regulo Carlos Llarena Hernandez, László Albert, Santiago Sánchez-Ramírez, Sergio Pérez-Ortega, Anna Ronikier, Isaac Garrido Benavent, Ricardo Galán Márquez, Westerdijk Fungal Biodiversity Institute, Westerdijk Fungal Biodiversity Institute - Yeast Research, Westerdijk Fungal Biodiversity Institute - Evolutionary Phytopathology, Uppsala University, National Central University, Universidad Rey Juan Carlos [Madrid] (URJC), Avenida Padre Claret 7, Partenaires INRAE, Naturalis Biodiversity Center [Leiden], Evolutionary Biology Centre, Slovak Academy of Sciences (SAS), Finnish Museum of Natural History (LUOMUS), University of Helsinki, Purdue University, Royal Botanic Gardens, Hungarian Mycological Society, Universidad Nacional de San Martin (UNSAM), Universidad de Alcalá - University of Alcalá (UAH), SIGNATEC Ltd., Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), University of Washington [Seattle], Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Moravian Museum, National Agriculture and Food Research Organization (NARO), ABL Herbarium, Auteur indépendant, Instituto Tecnológico de Ciudad Victoria, Torødveien 54, Lund University [Lund], Agricultural Research,Education and Extension Organization (ARREO), Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences (BAS), Universitat Politècnica de València (UPV), Panoramastr 47, Universidade de Lisboa (ULISBOA), Blaihofstr. 42, State University of New York (SUNY), Universidade Federal de Vicosa (UFV), Royal Holloway, University of London, Meise Botanic Garden, 45 Gurney Road, Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut National de la Recherche Agronomique (INRA)-Université Paul-Valéry - Montpellier 3 (UPVM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut de Recherche pour le Développement (IRD [France-Sud]), Naturmusem of Bolzano, Kleingemünderstraße 111, Norwegian University of Science and Technology (NTNU), Norwegian Institute for Nature Research (NINA), University of Oslo (UiO), Szent István University, University of Salzburg, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Via A. Guidotti 39, Institute of Biochemistry, Società Veneziana di Scienze Naturali, University of British Columbia (UBC), Westerdijk Fungal Biodiversity Insitute [Utrecht] (WI), Royal Netherlands Academy of Arts and Sciences (KNAW), Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam [Amsterdam] (UvA), Aarhus University [Aarhus], Christian-Albrechts University of Kiel, Conservatoire et Jardin Botaniques de Genève, T.v.Lohuizenstraat 34, Institute of Geology, Czech Academy of Sciences [Prague] (CAS), Martin-Luther-University Halle-Wittenberg, Canadian Museum of Nature, Russian Academy of Sciences [Moscow] (RAS), Fungal & Decay Diagnostics, Muséum national d'Histoire naturelle (MNHN), Universidad Complutense de Madrid = Complutense University of Madrid [Madrid] (UCM), Fundación CEAM, Unité de recherche Mycologie et Sécurité des Aliments (MycSA), Institut National de la Recherche Agronomique (INRA), Associazione Micologica Bresadola - Emilia Romagna, Via Ottone Primo 90, Via Don Luigi Sturzo, Instituto de Investigaciones Fundamentales en Agricultura Tropical 'Alejandro de Humboldt', United States Department of Agriculture (USDA), Mae Fah Luang University [Thaïlande] (MFU), Via C. Ronzani 61, Conservatoire Botanique National de Midi-Pyrénées (CBNMP), Université de Lille, Montana State University (MSU), Universidade Federal de Pernambuco [Recife] (UFPE), Hooischelf 13, Bavarian Natural History Collections, Botanical Survey of India, Centre for Environmental Policy, Imperial College London, Universiteit Gent = Ghent University [Belgium] (UGENT), Carlos Zamora, Juan, Svensson, Mån, Kirschner, Roland, Olariaga, Ibai, Ryman, Svengunnar, Alberto Parra, Lui, Geml, József, Rosling, Anna, Adamčík, Slavomír, Ahti, Teuvo, Catherine Aime, M., Martyn Ainsworth, A., Albert, László, Albertó, Edgardo, Altés García, Alberto, Ageev, Dmitry, Agerer, Reinhard, Aguirre-Hudson, Begoña, Ammirati, Joe, Andersson, Harry, Angelini, Claudio, Antonín, Vladimír, Aoki, Takayuki, Aptroot, André, Argaud, Didier, Imelda Arguello Sosa, Blanca, Aronsen, Arne, Arup, Ulf, Asgari, Bita, Assyov, Bori, Atienza, Violeta, Bandini, Ditte, Luís Baptista-Ferreira, João, Baral, Hans-Otto, Baroni, Tim, Weingart Barreto, Robert, Beker, Henry, Bell, Ann, Bellanger, Jean-Michel, Bellù, Francesco, Bemmann, Martin, Bendiksby, Mika, Bendiksen, Egil, Bendiksen, Katriina, Benedek, Lajo, Bérešová-Guttová, Anna, Berger, Franz, Berndt, Reinhard, Bernicchia, Annarosa, Biketova, Alona Yu., Bizio, Enrico, Bjork, Curti, Boekhout, Teun, Boertmann, David, Böhning, Tanja, Boittin, Florent, Boluda, Carlos G., Boomsluiter, Menno W., Borovička, Jan, Erik Brandrud, Tor, Braun, Uwe, Brodo, Irwin, Bulyonkova, Tatiana, H. Burdsall Jr., Harold, Buyck, Bart, Rosa Burgaz, Ana, Calatayud, Vicent, Callac, Philippe, Campo, Emanuele, Candusso, Massimo, Capoen, Brigitte, Carbó, Joaquim, Carbone, Matteo, Castañeda-Ruiz, Rafael F., Castellano, Michael A., Chen, Jie, Clerc, Philippe, Consiglio, Giovanni, Corriol, Gille, Courtecuisse, Régi, Crespo, Ana, Cripps, Cathy, Crous, Pedro W., Alves da Silva, Gladstone, da Silva, Meiriele, Dam, Marjo, Dam, Nico, Dämmrich, Frank, Das, Kanad, Davies, Linda, De Crop, Eske, De Kesel, Andre, De Lange, Ruben, De Madrignac Bonzi, Bárbara, dela Cruz, Thomas Edison E., Delgat, Lynn, Demoulin, Vincent, Desjardin, Dennis E., Diederich, Paul, Dima, Bálint, Martha Dios, Maria, Kumar Divakar, Pradeep, Douanla-Meli, Clovi, Douglas, Brian, Ricardo Drechsler-Santos, Elisandro, Dyer, Paul S., Eberhardt, Ursula, Ertz, Damien, Esteve-Raventós, Fernando, Angel Etayo Salazar, Javier, Evenson, Vera, Eyssartier, Guillaume, Farkas, Edit, Favre, Alain, Fedosova, Anna G., Filippa, Mario, Finy, Péter, Flakus, Adam, Fos, Simón, Fournier, Jacque, Fraiture, André, Franchi, Paolo, Esperanza Franco Molano, Ana, Friebes, Gernot, Frisch, Andrea, Fryday, Alan, Furci, Giuliana, Galán Márquez, Ricardo, Garbelotto, Matteo, María García-Martín, Joaquina, García Otálora, Mónica A., García Sánchez, Dania, Gardiennet, Alain, Garnica, Sigisfredo, Garrido Benavent, Isaac, Gates, Genevieve, da Cruz Lima Gerlach, Alice, Ghobad-Nejhad, Masoomeh, Gibertoni, Tatiana B., Grebenc, Tine, Greilhuber, Irmgard, Grishkan, Bella, Groenewald, Johannes Z., Grube, Martin, Gruhn, Gérald, Gueidan, Cécile, Gulden, Gro, FP Gusmão, Lui, Hafellner, Josef, Hairaud, Michel, Halama, Marek, Hallenberg, Nil, Halling, Roy E., Hansen, Karen, Bugge Harder, Christoffer, Heilmann-Clausen, Jacob, Helleman, Stip, Henriot, Alain, Hernandez-Restrepo, Margarita, Herve, Raphaël, Hobart, Caroline, Hoffmeister, Mascha, Høiland, Klau, Holec, Jan, Holien, Håkon, Hughes, Karen, Hubka, Vit, Huhtinen, Seppo, Ivančević, Bori, Jagers, Marian, Jaklitsch, Walter, Jansen, Annaelise, Jayawardena, Ruvishika S., Stjernegaard Jeppesen, Thoma, Jeppson, Mikael, Johnston, Peter, Magnus Jørgensen, Per, Kärnefelt, Ingvar, Kalinina, Liudmila B., Kantvilas, Gintara, Karadelev, Mitko, Kasuya, Taiga, Kautmanová, Ivona, Kerrigan, Richard W., Kirchmair, Martin, Kiyashko, Anna, Knapp, Dániel G., Knudsen, Henning, Knudsen, Kerry, Knutsson, Tommy, Kolařík, Miroslav, Kõljalg, Urma, Košuthová, Alica, Koszka, Attila, Kotiranta, Heikki, Kotkova, Vera, Koukol, Ondřej, Kout, Jiří, Kovács, Gábor M., Kříž, Martin, Kruys, Åsa, Kučera, Viktor, Kudzma, Lina, Kuhar, Francisco, Kukwa, Martin, Arun Kumar, T. K., Kunca, Vladimír, Kušan, Ivana, Kuyper, Thomas W., Lado, Carlo, Læssøe, Thoma, Lainé, Patrice, Langer, Ewald, Larsson, Ellen, Larsson, Karl-Henrik, Laursen, Gary, Lechat, Christian, Lee, Serena, Lendemer, James C., Levin, Laura, Lindemann, Uwe, Lindström, Håkan, Liu, Xingzhong, Carlos Llarena Hernandez, Regulo, Llop, Esteve, Locsmándi, Csaba, Jean Lodge, Deborah, Loizides, Michael, Lőkös, László, Luangsa-ard, Jennifer, Lüderitz, Matthia, Lumbsch, Thorsten, Lutz, Matthia, Mahoney, Dan, Malysheva, Ekaterina, Malysheva, Vera, Manimohan, Patinjareveettil, Marin-Felix, Yasmina, Marques, Guilhermina, Martínez-Gil, Rubén, Marson, Guy, Mata, Gerardo, Brandon Matheny, P., Harald Mathiassen, Geir, Matočec, Neven, Mayrhofer, Helmut, Mehrabi, Mehdi, Melo, Ireneia, Mešić, Armin, Methven, Andrew S., Miettinen, Otto, Millanes Romero, Ana M., Miller, Andrew N., Mitchell, James K., Moberg, Roland, Moreau, Pierre-Arthur, Moreno, Gabriel, Morozova, Olga, Morte, Asunción, Muggia, Lucia, Muñoz González, Guillermo, Myllys, Leena, Nagy, István, Nagy, László G., Alice Neves, Maria, Niemelä, Tuomo, Nimis, Pierluigi, Niveiro, Nicola, Noordeloos, Machiel E., Nordin, Ander, Raouia Noumeur, Sara, Novozhilov, Yuri, Nuytinck, Jorinde, Ohenoja, Esteri, Oliveira Fiuza, Patricia, Orange, Alan, Ordynets, Alexander, Ortiz-Santana, Beatriz, Pacheco, Leticia, Pál-Fám, Ferenc, Palacio, Melissa, Palice, Zdeněk, Papp, Viktor, Pärtel, Kadri, Pawlowska, Julia, Paz, Aurelia, Peintner, Ursula, Pennycook, Shaun, Liparini Pereira, Olinto, Pérez Daniëls, Pablo, Pérez-De-Gregorio Capella, Miquel À., Manuel Pérez del Amo, Carlo, Pérez Gorjón, Sergio, Pérez-Ortega, Sergio, Pérez-Vargas, Israel, Perry, Brian A., Petersen, Jens H., Petersen, Ronald H., Pfister, Donald H., Phukhamsakda, Chayanard, Piątek, Marcin, Piepenbring, Meike, Pino-Bodas, Raquel, Pablo Pinzón Esquivel, Juan, Pirot, Paul, Popov, Eugene S., Popoff, Orlando, Prieto Álvaro, María, Printzen, Christian, Psurtseva, Nadezhda, Purahong, Witoon, Quijada, Lui, Rambold, Gerhard, Ramírez, Natalia A., Raja, Huzefa, Raspé, Olivier, Raymundo, Tania, Réblová, Martina, Rebriev, Yury A., de Dios Reyes García, Juan, Ángel Ribes Ripoll, Miguel, Richard, Franck, Richardson, Mike J., Rico, Víctor J., Lucio Robledo, Gerardo, Rodrigues Barbosa, Flavia, Rodriguez-Caycedo, Cristina, Rodriguez-Flakus, Pamela, Ronikier, Anna, Rubio Casas, Lui, Rusevska, Katerina, Saar, Günter, Saar, Irja, Salcedo, Isabel, Salcedo Martínez, Sergio M., Salvador Montoya, Carlos A., Sánchez-Ramírez, Santiago, Vladimir Sandoval-Sierra, J., Santamaria, Sergi, Santana Monteiro, Josiane, Josef Schroers, Han, Schulz, Barbara, Schmidt-Stohn, Geert, Schumacher, Trond, Senn-Irlet, Beatrice, Ševčíková, Hana, Shchepin, Oleg, Shirouzu, Takashi, Shiryaev, Anton, Siepe, Klau, Sir, Esteban B., Sohrabi, Mohammad, Soop, Karl, Spirin, Viacheslav, Spribille, Toby, Stadler, Marc, Stalpers, Joost, Stenroos, Soili, Suija, Ave, Sunhede, Stellan, Svantesson, Sten, Svensson, Sigvard, Svetasheva, Tatyana Yu., Świerkosz, Krzysztof, Tamm, Heidi, Taskin, Hatira, Taudière, Adrien, Tedebrand, Jan-Olof, Tena Lahoz, Raúl, Temina, Marina, Thell, Arne, Thines, Marco, Thor, Göran, Thüs, Holger, Tibell, Leif, Tibell, Sanja, Timdal, Einar, Tkalčec, Zdenko, Tønsberg, Tor, Trichies, Gérard, Triebel, Dagmar, Tsurykau, Andrei, Tulloss, Rodham E., Tuovinen, Veera, Ulloa Sosa, Miguel, Urcelay, Carlo, Valade, Françoi, Valenzuela Garza, Ricardo, van den Boom, Pieter, Van Vooren, Nicola, Vasco-Palacios, Aida M., Vauras, Jukka, Manuel Velasco Santos, Juan, Vellinga, Else, Verbeken, Annemieke, Vetlesen, Per, Vizzini, Alfredo, Voglmayr, Hermann, Volobuev, Sergey, von Brackel, Wolfgang, Voronina, Elena, Walther, Grit, Watling, Roy, Weber, Evi, Wedin, Mat, Weholt, Øyvind, Westberg, Martin, Yurchenko, Eugene, Zehnálek, Petr, Zhang, Huang, Zhurbenko, Mikhail P., Ekman, Stefan, Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Purdue University [West Lafayette], Universidade de Lisboa = University of Lisbon (ULISBOA), Universidade Federal de Viçosa = Federal University of Viçosa (UFV), Meise Botanic Garden [Belgium] (Plantentuin), Université Paul-Valéry - Montpellier 3 (UPVM)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-École Pratique des Hautes Études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Westerdijk Fungal Biodiversity Institute [Utrecht] (WI), Conservatoire et Jardin Botaniques de Genève (CJBG), Staatlichen Naturwissenschaftlichen Sammlungen Bayerns (SNSB), Universiteit Gent = Ghent University (UGENT), Finnish Museum of Natural History, Plant Biology, Tuula Niskanen / Principal Investigator, Botany, Doctoral Programme in Wildlife Biology, IMT Lille Douai, Institut Catholique Lille, Univ. Artois, IMPact de l'Environnement Chimique sur la Santé humaine (IMPECS) - EA 4483, Naturalis Biodiversity Center, and Evolutionary and Population Biology (IBED, FNWI)
- Subjects
0106 biological sciences ,0301 basic medicine ,POSITIVE SELECTION ,Biologisk systematik ,VDP::Matematikk og Naturvitenskap: 400::Basale biofag: 470::Genetikk og genomikk: 474 ,Speciation ,[SDV]Life Sciences [q-bio] ,IMC11 ,nomenclature ,speciation ,taxonomy ,typification ,voucherless fungi ,Biodiversity ,voucherless fung ,VDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Systematisk botanikk: 493 ,Biological Systematics ,Matematikk og Naturvitenskap: 400::Basale biofag: 470 [VDP] ,01 natural sciences ,Voucherless fungi ,purl.org/becyt/ford/1 [https] ,Typification ,Environmental DNA ,CY3-LABELED OLIGONUCLEOTIDE PROBES ,Nomenclature ,ta119 ,GENE TREES ,1184 Genetics, developmental biology, physiology ,Soil Biology ,FRESH-WATER FUNGI ,PE&RC ,Agricultural and Biological Sciences (miscellaneous) ,INTERNAL TRANSCRIBED SPACER ,FUNGAL PHYLOGENY ,[SDE]Environmental Sciences ,Taxonomy (biology) ,RIBOSOMAL-RNA ,INTEGRATIVE TAXONOMY ,Biology ,VDP::Mathematics and natural science: 400::Basic biosciences: 470::Genetics and genomics: 474 ,010603 evolutionary biology ,OPERATIONAL TAXONOMIC UNITS ,DNA sequencing ,Article ,SPECIES DELIMITATION ,03 medical and health sciences ,IMC11 nomenclature ,Internal transcribed spacer ,purl.org/becyt/ford/1.6 [https] ,Ecology, Evolution, Behavior and Systematics ,Bodembiologie ,Taxonomy ,VDP::Mathematics and natural science: 400::Zoology and botany: 480::Systematic botany: 493 ,Biology and Life Sciences ,IN-SITU HYBRIDIZATION ,CY3-LABELED ,Laboratorium voor Phytopathologie ,voucherless ,030104 developmental biology ,Taxon ,Evolutionary biology ,Laboratory of Phytopathology ,ta1181 ,BIODIVERSITY ,fungi ,OLIGONUCLEOTIDE PROBES - Abstract
Nomenclatural type definitions are one of the most important concepts in biological nomenclature. Being physical objects that can be re-studied by other researchers, types permanently link taxonomy (an artificial agreement to classify biological diversity) with nomenclature (an artificial agreement to name biological diversity). Two proposals to amend the International Code of Nomenclature for algae, fungi, and plants (ICN), allowing DNA sequences alone (of any region and extent) to serve as types of taxon names for voucherless fungi (mainly putative taxa from environmental DNA sequences), have been submitted to be voted on at the 11th International Mycological Congress (Puerto Rico, July 2018). We consider various genetic processes affecting the distribution of alleles among taxa and find that alleles may not consistently and uniquely represent the species within which they are contained. Should the proposals be accepted, the meaning of nomenclatural types would change in a fundamental way from physical objects as sources of data to the data themselves. Such changes are conducive to irreproducible science, the potential typification on artefactual data, and massive creation of names with low information content, ultimately causing nomenclatural instability and unnecessary work for future researchers that would stall future explorations of fungal diversity. We conclude that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way. As an alternative, we highlight the use of formulas for naming putative taxa (candidate taxa) that do not require any modification of the ICN. Publisher’s Note A first version of this text was prepared by the first eight authors and the last one, given here. The other listed co-authors in the article PDF support the content, and their actual contributions varied from only support to additions that substantially improved the content. The full details of all co-authors, with their affiliations, are included in Supplementary Table 1 after p.175 of the article for reasons of clarity and space. Slavomír Adamčík Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, Slovakia Teuvo Ahti Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland M. Catherine Aime Purdue University, 915 W. State St., West Lafayette, Indiana 47907, U.S.A. A. Martyn Ainsworth Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom László Albert Hungarian Mycological Society, 1087 Könyves Kálmán krt. 40, Budapest, Hungary Edgardo Albertó Instituto de Investigaciones Biotecnológicas-Instituto Tecnológico de Chascomús, Universidad Nacional de San Martin-Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina Alberto Altés García Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Dmitry Ageev SIGNATEC Ltd., 630090, Novosibirsk, Akademgorodok (Novosibirsk Scientific Center), Inzhenernaya str., 22, Russia Reinhard Agerer Ludwig-Maximilians-Universität München, Menzinger Str. 67, 80638 München, Germany Begona Aguirre-Hudson Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom Joe Ammirati University of Washington, Seattle, Washington 98195-1800, U.S.A. Harry Andersson Eichhahnweg 29a, 38108 Braunschweig, Germany Claudio Angelini Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Apartado 21-9, Santo Domingo, Dominican Republic Vladimír Antonín Moravian Museum, Zeny trh 6, 659 37 Brno, Czech Republic Takayuki Aoki Genetic Resources Center, National Agriculture and Food Research Organization, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan André Aptroot ABL Herbarium, G.v.d.Veenstraat 107, 3762 XK Soest, The Netherlands Didier Argaud 40 rue du Justemont, 57290 Fameck, France Blanca Imelda Arguello Sosa Instituto Tecnológico de Ciudad Victoria, Tecnológico Nacional de México, Ciudad Victoria, Tamaulipas, Mexico Arne Aronsen Torødveien 54, 3135 Torød, Norway Ulf Arup Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Bita Asgari Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization, Tehran, Iran Boris Assyov Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, 2 Gagarin Str., 1113 Sofia, Bulgaria Violeta Atienza Facultad de Ciencias Biológicas, Universitat de València, C/Dr Moliner 50, 46100, Burjasot, Valencia, Spain Ditte Bandini Panoramastr 47, 69257 Wiesenbach, Germany João Luís Baptista-Ferreira Instituto de Biossistemas e Ciências Integrativas, Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal Hans-Otto Baral Blaihofstr. 42, 72074 Tübingen, Germany Tim Baroni The State University of New York, 340 Bowers Hall, P.O. Box 2000, Cortland, New York 13045, U.S.A. Robert Weingart Barreto Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil Henry Beker (1) Royal Holloway, University of London, United Kingdom; (2) Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Ann Bell 45 Gurney Road, Lower Hutt, New Zealand Jean-Michel Bellanger CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Francesco Bellù Naturmusem of Bolzano, CP 104, 39100, Bolzano, Italy Martin Bemmann Kleingemünderstraße 111, 69118 Heidelberg, Germany Mika Bendiksby NTNU, University Museum, Norwegian University of Science and Technology, 7491 Trondheim, Norway Egil Bendiksen Norwegian Institute for Nature Research, Gaustadalleen 21, 0349 Oslo, Norway Katriina Bendiksen Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Lajos Benedek Szent Istvan University, Hungary Anna Bérešová-Guttová Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, Slovakia Franz Berger University of Salzburg, Salzburg, Austria Reinhard Berndt Herbaria Z+ZT, ETH Zürich, CHN D37, Universitätstr. 16, 8092 Zürich, Switzerland Annarosa Bernicchia Via A. Guidotti 39, 40134 Bologna, Italy Alona Yu. Biketova Institute of Biochemistry, BRC-HAS, 6726 Szeged, Temesvari krt. 62, 6726 Szeged, Hungary Enrico Bizio Società Veneziana di Micologia, Società Veneziana di Scienze Naturali, Fontego dei Turchi, Santa Croce 1730, 30135 Venice, Italy Curtis Bjork UBC Herbarium, Beaty Biodiversity Museum, University of British Columbia, Canada Teun Boekhout (1) Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; (2) Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands David Boertmann Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark Tanja Böhning AG Geobotanik Schleswig-Holstein & Hamburg, c/o University of Kiel, Olshausenstraße 75, 24098 Kiel, Germany Florent Boittin Ascomycete.org, 36 rue de la Garde, 69005 Lyon, France Carlos G. Boluda Conservatoire et Jardin botaniques de la Ville de Genève, 1292 Genève, Switzerland Menno W. Boomsluiter T.v.Lohuizenstraat 34, 8172xl, Vaassen, The Netherlands Jan Borovička Institute of Geology, Czech Academy of Sciences, Rozvojova 269, 165 00 Prague 6, Czech Republic Tor Erik Brandrud Norwegian Institute for Nature Research, Gaustadalleen 21, 0349 Oslo, Norway Uwe Braun Martin-Luther-Universität, Institut für Biologie, Bereich Geobotanik, und Botanischer Garten, Herbarium, Neuwerk 21, 06099 Halle, Germany Irwin Brodo Canadian Museum of Nature, 240 McLeod Street, Ottawa, Ontario, Canada Tatiana Bulyonkova A.P. Ershov Institute of Informatics Systems, Russian Academy of Sciences, Siberian Branch, 6 Acad. Lavrentjev pr., Novosibirsk 630090, Russia Harold H. Burdsall Jr. Fungal & Decay Diagnostics, LLC, 9350 Union Valley Road, Black Earth, Wisconsin 53515, U.S.A. Bart Buyck Muséum National d’Histoire Naturelle, CP 39, ISYEB, UMR 7205 CNRS MNHN UPMC EPHE, 12 rue Buffon, 75005 Paris, France Ana Rosa Burgaz Facultad de Ciencias Biológicas, Universidad Complutense de Madrid, 28040 Madrid, Spain Vicent Calatayud Fundación CEAM, c/ Charles R. Darwin, 14, Parque Tecnológico, 46980 Paterna, Valencia, Spain Philippe Callac INRA, MycSA, CS 20032, 33882 Villenave d’Ornon, France Emanuele Campo Associazione Micologica Bresadola, Via Alessandro Volta 46, 38123 Trento, Italy Massimo Candusso Via Ottone Primo 90, 17021, Alassio, Savona, Italy Brigitte Capoen Queffioec, rue de Saint Gonval, 22710 Penvenan, France Joaquim Carbó Roser, 60, 17257 Torroella de Montgrí, Girona, Spain Matteo Carbone Via Don Luigi Sturzo 173 16148 Genova, Italy Rafael F. Castañeda-Ruiz Instituto de Investigaciones Fundamentales en Agricultura, Tropical ‘Alejandro de Humboldt’, OSDE, Grupo Agrícola, Calle 1 Esq. 2, Santiago de Las Vegas, C. Habana 17200, Cuba Michael A. Castellano USDA, Forest Service, Northern Research Station, Corvallis, Oregon 97330, U.S.A. Jie Chen Mae Fah Luang University, Chang Wat Chiang Rai 57100, Thailand Philippe Clerc Conservatoire et Jardin botaniques de la Ville de Genève, 1292 Genève, Switzerland Giovanni Consiglio Via C. Ronzani 61, 40033 Casalecchio Bologna, Italy Gilles Corriol National Botanical Conservatory for Pyrenees and Midi-Pyrénées Region of France and BBF Herbarium, Vallon de Salut. B.P. 315. 65203 Bagnères-de-Bigorre, France Régis Courtecuisse Université Lille, Fac. Pharma. Lille, EA4483 IMPECS, 59000 Lille, France Ana Crespo Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain Cathy Cripps Plant Sciences & Plant Pathology, 119 Plant Biosciences Building, Montana State University, Bozeman, Montana 59717, U.S.A. Pedro W. Crous Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Gladstone Alves da Silva Universidade Federal de Pernambuco, Centro de Biociências, Avenida da Engenharia, S/N, Cidade Universitária, Recife, Pernambuco, Brazil Meiriele da Silva Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil Marjo Dam Hooischelf 13, 6581 SL Malden, The Netherlands Nico Dam Hooischelf 13, 6581 SL Malden, The Netherlands Frank Dämmrich The Bavarian Natural History Collections (SNSB Munich), Menzinger Strasse 71, 80638, München, Germany Kanad Das Botanical Survey of India, Cryptogamic Unit, P.O. Botanic Garden, Howrah 711103, W.B., India Linda Davies Centre for Environmental Policy, Imperial College London, SW7 2AZ, United Kingdom Eske De Crop Ghent University K.L. Ledeganckstraat 35, 9000 Ghent, Belgium Andre De Kesel Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Ruben De Lange Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium Bárbara De Madrignac Bonzi Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Thomas Edison E. dela Cruz University of Santo Tomas, Espana 1008 Manila, Philippines Lynn Delgat Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium Vincent Demoulin Institut de Botanique, B.22, Université de Liège, 4000 Liège I, Belgium Dennis E. Desjardin HD Thiers Herbarium (SFSU), San Francisco State University, 1600 Holloway Ave, San Francisco, California 94132, U.S.A. Paul Diederich Musée national d’histoire naturelle, 25 rue Münster, 2160 Luxembourg, Luxembourg Bálint Dima (1) Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary; (2) Viikki Plant Science Centre, University of Helsinki, P.O. Box 65, 00014 Helsinki, Finland Maria Martha Dios Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Catamarca, Av Belgrano 300, 4700 San Fernando del Valle de Catamarca, Argentina Pradeep Kumar Divakar Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain Clovis Douanla-Meli Julius Kühn-Institut, Federal Research Centre for Cultivated Plants, Institute for National and International Plant Health, Messeweg 11-12, 38104 Braunschweig, Germany Brian Douglas Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3AB, United Kingdom Elisandro Ricardo Drechsler-Santos Universidade Federal de Santa Catarina, Campus Universitário Reitor João David Ferreira Lima, Trindade, Florianópolis, Santa Catarina CEP 88040-900, Brazil Paul S. Dyer School of Life Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom Ursula Eberhardt Abt. Botanik, Staatliches Museum für Naturkunde Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany Damien Ertz Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Fernando Esteve-Raventós Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Javier Angel Etayo Salazar Navarro Villoslada 16, 3º dcha., 31003 Pamplona, Navarra, Spain Vera Evenson Sam Mitchel Herbarium of Fungi, Denver Botanic Gardens, 1007 York Street, Denver, Colorado 80206, U.S.A. Guillaume Eyssartier Muséum national d’histoire naturelle, Jardin des plantes, 57 rue Cuvier, 75005 Paris, France Edit Farkas Institute of Ecology and Botany, MTA Centre for Ecological Research, 2163 Vácrátót, Hungary Alain Favre Fédération Mycologique et Botanique Dauphiné Savoie, Le Prieuré, 144 Place de l’Eglise, 74320 Sevrier, France Anna G. Fedosova Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Mario Filippa Regione Monsarinero 36, 14041 Agliano Terme, Italy Péter Finy 8000 Székesfehérvár, Zsombolyai u. 56, Hungary Adam Flakus W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Simón Fos Facultad de Ciencias Biológicas, Universitat de València, C/Dr Moliner 50, 46100, Burjasot, Valencia, Spain Jacques Fournier Las Muros, F. 09420 Rimont, France André Fraiture Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Paolo Franchi Associazione Micologica Bresadola, Via Alessandro Volta 46, 38123 Trento, Italy Ana Esperanza Franco Molano Escuela de Microbiología, Universidad de Antioquia, AA1226, Fundación Biodiversa Colombia, Medellín, Colombia Gernot Friebes Centre of Natural History, Botany & Mycology, Universalmuseum Joanneum, Weinzöttlstraße 16, 8045 Graz, Austria Andreas Frisch NTNU, University Museum, Norwegian University of Science and Technology, 7491 Trondheim, Norway Alan Fryday Michigan State University, East Lansing, Michigan 48824, U.S.A. Giuliana Furci The Fungi Foundation, Paseo Bulnes 79 of. 112A, Santiago, Chile Ricardo Galán Márquez Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Matteo Garbelotto University of California, 130 Mulford Hall #3114 Berkeley, California 94720, U.S.A. Joaquina Maria Garcia-Martin Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Mónica A. García Otálora Herbaria Z+ZT, ETH Zürich, CHN D37, Universitätstr. 16, 8092 Zürich, Switzerland Dania García Sánchez Universitat Rovira i Virgili, C/ Sant Llorenç 21, 43201 Reus, Tarragona, Spain Alain Gardiennet 14 rue Roulette, 21260 Véronnes, France Sigisfredo Garnica Instituto de Bioquímica y Microbiología, Universidad Austral de Chile, Isla Teja Campus, Casilla 567, Valdivia, Chile Isaac Garrido Benavent Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Genevieve Gates Tasmanian Institute of Agriculture, Private Bag 54, Hobart, Tasmania 7001, Australia Alice da Cruz Lima Gerlach Conservatoire et Jardin Botaniques de la ville de Genève, Genève, Switzerland Masoomeh Ghobad-Nejhad Iranian Research Organization for Science and Technology, P.O. Box 15815-3538, Tehran 15819, Iran Tatiana B. Gibertoni Universidade Federal de Pernambuco, Centro de Biociências, Avenida da Engenharia, S/N, Cidade Universitária, Recife, Pernambuco, Brazil Tine Grebenc Slovenian Forestry Institute, Vecna pot 2, 100 Ljubljana, Slovenia Irmgard Greilhuber University of Vienna, Rennweg 14, 1030 Vienna, Austria Bella Grishkan Institute of Evolution, University of Haifa, Aba Khoushi Ave. 199, Mt. Carmel, Haifa 3498838, Israel Johannes Z. Groenewald Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Martin Grube Institute of Biology, University of Graz, Holteiasse 6, 8010 Graz, Austria Gérald Gruhn Office National des Forêts, 2 Avenue de Saint-Mandé, 75570 Paris Cedex 12, France Cécile Gueidan CSIRO — Australian National Herbarium, Clunies Ross Street, Canberra ACT 2601, Australia Gro Gulden Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Luis FP Gusmão Universidade Estadual de Feira de Santana, Av. Transnordestina, s/n, Bairro Novo Horizonte, CEP:44036-900, Feira de Santana, Bahia, Brazil Josef Hafellner Institute of Biology, University of Graz, Holteiasse 6, 8010 Graz, Austria Michel Hairaud 2 Impasse des Marronniers, 79360 Poivendre de Marigny, France Marek Halama Museum of Natural History, Wrocław University, ul. H. Sienkiewicza 5, 50-335 Wrocław, Poland Nils Hallenberg University of Gothenburg, Box 461, 40530 Göteborg, Sweden Roy E. Halling Institute of Systematic Botany, New York Botanical Garden, 2900 Southern Blvd, Bronx, New York 10458-5126, U.S.A. Karen Hansen Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Christoffer Bugge Harder Texas Tech University, Box 42122, Lubbock, Texas 79409, U.S.A. Jacob Heilmann-Clausen Natural History Museum of Denmark, Universitetsparken 15, 2100 København, Denmark Stip Helleman Sweelinck 78, 5831KT Boxmeer, The Netherlands Alain Henriot Mycological Society of France, 20 rue Rottembourg, 12th arrondissement, Paris, France Margarita Hernandez-Restrepo Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Raphaël Herve 24 rue des Fougères, 86550 Mignaloux-Beauvoir, France Caroline Hobart 84 Stafford Road, Sheffield, South Yorkshire S2 2SF, United Kingdom Mascha Hoffmeister Julius Kühn-Institut, Institute for Epidemiology and Pathogen Diagnostics, Braunschweig, Germany Klaus Høiland University of Oslo, P.O.Box 1066, Blindern, 0316 Oslo, Norway Jan Holec National Museum, Herbarium PRM, Cirkusová 1740, 193 00 Praha 9, Czech Republic Håkon Holien Faculty of Bioscience and Aquaculture, NORD University, P.O. Box 2501, 7729 Steinkjer, Norway Karen Hughes University of Tennessee, Knoxville, Tennessee 37996, U.S.A. Vit Hubka Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Seppo Huhtinen Herbarium TUR, Biodiversity Unit, University of Turku, 20014 Turku, Finland Boris Ivančević Natural History Museum, Njegoševa 51, P.O. Box 401, 11000 Belgrade, Serbia Marian Jagers Reelaan 13, 7522 LR Enschede, The Netherlands Walter Jaklitsch Institute of Forest Entomology, Forest Pathology and Forest Protection, University of Natural Resources and Life Sciences Vienna, Vienna, Austria AnnaElise Jansen Stationsstraat 10, 6701 AM Wageningen, the Netherlands Ruvishika S. Jayawardena Mae Fah Luang University, Chang Wat Chiang Rai 57100, Thailand Thomas Stjernegaard Jeppesen Global Biodiversity Information Facility, Universitetsparken 15, 2100 København Ø, Denmark Mikael Jeppson Lilla Håjumsgatan 4, 46135 Trollhättan, Sweden Peter Johnston Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1072, New Zealand Per Magnus Jørgensen University of Bergen, Allégaten 41, P.O. Box 7800, 5020 Bergen, Norway Ingvar Kärnefelt Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Liudmila B. Kalinina Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Gintaras Kantvilas Tasmanian Herbarium (HO), Tasmanian Museum and Art Gallery, P.O. Box 5058, UTAS LP.O., Sandy Bay, Tasmania 7005, Australia Mitko Karadelev Institute of Biology, Faculty of Natural Science and Mathematics, Ss. Cyril and Methodius University, Arhimedova 5, 1000 Skopje, Republic of Macedonia Taiga Kasuya Faculty of Risk and Crisis Management, Chiba Institute of Science, 3 Shiomi-cho, Choshi, Chiba 288-0025, Japan Ivona Kautmanová Natural History Museum, Slovak National Museum, Bratislava, Slovakia Richard W. Kerrigan RWK Research, Kittanning, Pennsylvania 16201, U.S.A. Martin Kirchmair Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria Anna Kiyashko Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Dániel G. Knapp Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary Henning Knudsen Natural History Museum of Denmark, Universitetsparken 15, 2100 København, Denmark Kerry Knudsen Faculty of Environmental Sciences, University of Life Sciences at Prague, Prague, Czech Republic Tommy Knutsson Nedra Västerstad 111, 380 62 Mörbylånga, Sweden Miroslav Kolařík Institute of Microbiology ASCR, Videnska 1083, 142 20 Prague 4, Czech Republic Urmas Kõljalg Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Alica Košuthová Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Attila Koszka Faculty of Agricultural and Environmental Sciences, Kaposvar University, 7400 Kaposvar, Hungary Heikki Kotiranta Finnish Environment Institute, P.O. Box 140, 00251 Helsinki, Finland Vera Kotkova Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Ondřej Koukol Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Jiří Kout University of West Bohemia, Faculty of Education, Klatovska 51, 306 19 Pilsen, Czech Republic Gábor M. Kovács Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary Martin Kříž Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Åsa Kruys Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Viktor Kučera Institute of Botany, Plant Science and Biodiversity Centre, Slovak Academy of Sciences, Dúbravská cesta 9, 845 23 Bratislava, Slovakia Linas Kudzma 37 Maple Ave. Annandale, New Jersey 08801, U.S.A. Francisco Kuhar Instituto Multidisciplinario de Biología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Casilla de Correo 495, 5000 Córdoba, Argentina Martin Kukwa Faculty of Biology, University of Gdańsk, Wita Stwosza 59, 80-308 Gdańsk, Poland T. K. Arun Kumar The Zamorin’s Guruvayurappan College, Kozhikode, Kerala 673014, India Vladimír Kunca Technical University in Zvolen, Ul. T. G. Masaryka 24, 960 53 Zvolen,Slovakia Ivana Kušan Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Thomas W. Kuyper Wageningen University & Research, Droevendaalsesteeg 4, 6708 PB Wageningen, The Netherlands Carlos Lado Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Thomas Læssøe Natural History Museum of Denmark, Universitetsparken 15, 2100 København, Denmark Patrice Lainé 123 rue Saint Antoine, 75004, Paris, France Ewald Langer University of Kassel, Heinrich-Plett-Strasse 40, 34132 Kassel, Germany Ellen Larsson University of Gothenburg, Box 461, 40530 Göteborg, Sweden Karl-Henrik Larsson Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Gary Laursen Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks, Alaska 99775-7000, U.S.A. Christian Lechat Ascofrance, 64 route de Chizé, 79360 Villiers en Bois, France Serena Lee Herbarium Singapore Botanic Gardens, National Parks Board, Singapore James C. Lendemer (1) Institute of Systematic Botany, New York Botanical Garden, 2900 Southern Blvd, Bronx, New York 10458-5126, U.S.A.; (2) Graduate Center, City University of New York, 365 5th Ave, New York, New York 10016, U.S.A. Laura Levin University of Buenos Aires, Junin 956, 1113, Buenos Aires, Argentina Uwe Lindemann Landesmuseum für Naturkunde, Münster, Germany Håkan Lindström Östansjö 150, 840 64 Kälarne, Sweden Xingzhong Liu Institute of Microbiology, Chinese Academy of Sciences, No 3 Park 1, Beichen West Road, Chaoyang District, Beijing 100101, China Regulo Carlos Llarena Hernandez Facultad de Ciencias Biológicas y Agropecuarias, Peñuela, Universidad Veracruzana, Amatlán de los Reyes, Ver., Mexico Esteve Llop Facultat de Biologia, Universitat de Barcelona, Av. Diagonal, 643, 08028 Barcelona, Spain Csaba Locsmándi Hungarian Natural History Museum, 1087 Budapest, Hungary Deborah Jean Lodge USDA Forest Service, NRS, P.O. Box 1377, Luquillo, Puerto Rico 00773-1377, U.S.A. Michael Loizides P.O. Box 58499, 3734 Limassol, Cyprus László Lőkös Hungarian Natural History Museum, 1087 Budapest, Hungary Jennifer Luangsa-ard National Center for Genetic Engineering and Biotechnology (BIOTEC), NSTDA, 113 Thailand Science Park, Phaholyothin Rd., Klong Nueng, Klong Luang, Pathum Thani 12120, Thailand Matthias Lüderitz AG Geobotanik Schleswig-Holstein & Hamburg, c/o University of Kiel, Olshausenstraße 75, 24098 Kiel, Germany Thorsten Lumbsch Field Museum, 1400 S. Lake Shore Dr., Chicago, Illinois 60605, U.S.A. Matthias Lutz Institute of Evolution and Ecology, University of Tübingen, Auf der Morgenstelle 5, 72076 Tübingen, Germany Dan Mahoney Callaghan Innovation, 69 Gracefield Road, Lower Hutt 5010, New Zealand Ekaterina Malysheva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Vera Malysheva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Patinjareveettil Manimohan University of Calicut, Kerala, 673 635, India Yasmina Marin-Felix Westerdijk Fungal Biodiversity Institute, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands Guilhermina Marques Centre for the Research and Technology of Agro-Environmental and Biological Sciences, University of Tras-os-Montes and Alto Douro, Laboratory of Mycology and Soil Microbiology, 5000-801 Vila Real, Portugal Rubén Martínez-Gil Ascomycete.org, 36 rue de la Garde, 69005 Lyon, France Guy Marson Musée national d’histoire naturelle, 25 rue Münster, 2160 Luxembourg, Luxembourg Gerardo Mata Instituto de Ecología, A.C., Carretera antigua a Coatepec 351, El Haya, Xalapa 91070, Veracruz, Mexico P. Brandon Matheny University of Tennessee, Knoxville, Tennessee 37996, U.S.A. Geir Harald Mathiassen Tromsø University Museum, University of Tromsø — The Arctic University of Norway, 9037 Tromsø, Norway Neven Matočec Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Helmut Mayrhofer Institute of Biology, University of Graz, Holteiasse 6, 8010 Graz, Austria Mehdi Mehrabi Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization, Tehran, Iran Ireneia Melo Botanical Garden, National Museum of Natural History and Science, University of Lisbon, Portugal Armin Mešić Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Andrew S. Methven Savannah State University, Savannah, Georgia 31404, U.S.A Otto Miettinen Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Ana M. Millanes Romero Universidad Rey Juan Carlos, 28933 Móstoles, Madrid, Spain Andrew N. Miller Illinois Natural History Survey, University of Illinois Urbana-Champaign, 1816 South Oak Street, Champaign, Illinois 61820-6970, U.S.A. James K. Mitchell Harvard University, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U.S.A. Roland Moberg Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Pierre-Arthur Moreau Université Lille, Fac. Pharma. Lille, EA4483 IMPECS, 59000 Lille, France Gabriel Moreno Facultad de Biología, Ciencias Ambientales y Química, Universidad de Alcalá, 28805 Alcalá de Henares, Madrid, Spain Olga Morozova Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Asunción Morte Facultad de Biología, Universidad de Murcia, Campus de Espinardo, 30100 Murcia, Spain Lucia Muggia University of Trieste, via L. Giorgieri 10, 34127 Trieste, Italy Guillermo Muñoz González Avda Valvanera N.32, 5D, 26500 Calahorra, La Rioja, Spain Leena Myllys Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland István Nagy Institute of Biology, Eötvös Loránd University, Pázmány Péter sétány 1/c, 1117 Budapest, Hungary László G. Nagy Institute of Biochemistry, BRC-HAS, 6726 Szeged, Temesvari krt. 62, 6726 Szeged, Hungary Maria Alice Neves Universidade Federal de Santa Catarina, Campus Universitário Reitor João David Ferreira Lima, Trindade, Florianópolis, Santa Catarina CEP 88040-900, Brazil Tuomo Niemelä Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Pier Luigi Nimis University of Trieste, via L. Giorgieri 10, 34127 Trieste, Italy Nicolas Niveiro Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Machiel E. Noordeloos Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA, Leiden, The Netherlands Anders Nordin Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Sara Raouia Noumeur Faculty of Natural and Life Sciences, University of Batna 2, 05000 Batna, Algeria Yuri Novozhilov Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Jorinde Nuytinck Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands Esteri Ohenoja Botanical Museum, University of Oulu, Finland Patricia Oliveira Fiuza Universidade Estadual de Feira de Santana, Av. Transnordestina, s/n, Bairro Novo Horizonte, CEP:44036-900, Feira de Santana, Bahia, Brazil Alan Orange National Museum of Wales, Cardiff CF10 3NP, United Kingdom Alexander Ordynets University of Kassel, Heinrich-Plett-Strasse 40, 34132 Kassel, Germany Beatriz Ortiz-Santana USDA Forest Service, Northern Research Station, One Gifford Pinchot Dr, Madison, Wisconsin 53726, U.S.A. Leticia Pacheco Universidad Autónoma Metropolitana-Iztapalapa, Av. San Rafael Atlixco 186, Col. Vicentina, 09340 México, D. F., Mexico Ferenc Pál-Fám Faculty of Agricultural and Environmental Sciences, Kaposvar University, 7400 Kaposvar, Hungary Melissa Palacio Universidade Federal do Rio Grande do Sul, Brazil Zdeněk Palice Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Viktor Papp Szent Istvan University, 1118 Budapest, Menesi st. 44, Hungary Kadri Pärtelv Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Julia Pawlowska Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, 02-089 Warsaw, Poland Aurelia Paz Urb. La Llosa, 219, 39509 Villanueva de la Peña, Mazcuerras, Cantabria, Spain Ursula Peintner Institut für Mikrobiologie, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria Shaun Pennycook Manaaki Whenua Landcare Research, Private Bag 92170, Auckland 1072, New Zealand Olinto Liparini Pereira Universidade Federal de Viçosa, 36570-000, Viçosa, Minas Gerais, Brazil Pablo Pérez Daniëls University of Córdoba, 14071, Córdoba, Spain Miquel À. Pérez-De-Gregorio Capella C/ Pau Casals, 6, 1º, 1ª, 17001, Girona, Spain Carlos Manuel Pérez del Amo C/ Luis de Ulloa, 1, 7º I, 26004 Logroño, Navarra, Spain Sergio Pérez Gorjón Universidad de Salamanca, Avda. Licenciado Mendez Nieto s/n, 37007 Salamanca, Spain Sergio Pérez-Ortega Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Israel Pérez-Vargas Facultad de Farmacia, Universidad de La Laguna, c/ Astrofísico Sánchez s/n 38071 La Laguna, Tenerife, Canary Islands, Spain Brian A. Perry California State University East Bay, Hayward, California 94542, U.S.A. Jens H. Petersen Nøruplundvej 2, 8400 Ebeltoft, Denmark Ronald H. Petersen University of Tennessee, Knoxville, Tennessee 37996, U.S.A. Donald H. Pfister Harvard University, 22 Divinity Avenue, Cambridge MA 02138, U.S.A. Chayanard Phukhamsakda Mae Fah Luang University, Chang Wat Chiang Rai 57100, Thailand Marcin Piątek W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Meike Piepenbring Faculty of Biosciences, Goethe University Frankfurt am Main, Germany Raquel Pino-Bodas Real Jardín Botánico-CSIC, Plaza de Murillo 2, 28014, Madrid, Spain Juan Pablo Pinzón Esquivel Universidad Autónoma de Yucatán, Carretera Mérida-Xmatkuil Km. 15.5, Apdo. Postal: 4-116 Itzimná,C.P: 97100, Merida, Yucatan, Mexico Paul Pirot Rue des Peupliers 10, 6840 Neufchâteau, Belgium Eugene S. Popov Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Orlando Popoff Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina María Prieto Álvaro Universidad Rey Juan Carlos, 28933 Móstoles, Madrid, Spain Christian Printzen Senckenberg Forschungsinstitut und Naturmuseum Frankfurt, Abteilung Botanik und Molekulare Evolutionsforschung, Herbarium Senckenbergianum (FR), Senckenberganlage 25, 60325 Frankfurt am Main, Germany Nadezhda Psurtseva Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Witoon Purahong Helmholtz Centre for Environmental Research GmbH — UFZ, Theodor-Lieser-Straße 4, 06120 Halle, Germany Luis Quijada Harvard University, 22 Divinity Avenue, Cambridge, Massachusetts 02138, U.S.A. Gerhard Rambold University of Bayreuth, Universitätsstrasse 30, 95447 Bayreuth, Germany Natalia A. Ramírez Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Huzefa Raja University of North Carolina at Greensboro, 435 Sullivan Science Building, PO Box 26170, Greensboro North Carolina 27402-6170, U.S.A. Olivier Raspé Botanic Garden Meise, Nieuwelaan 38, 1860 Meise, Belgium Tania Raymundo Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Miguel Hidalgo, Santo Tomás, 11340 Ciudad de México, Mexico Martina Réblová Institute of Botany, Czech Academy of Sciences, Pruhonice, Czech Republic Yury A. Rebriev Southern Scientific Center, Russian Academy of Sciences, 41 Chehova str., Rostov-on-Don, 344006, Russia Juan de Dios Reyes García Paseo Virgen de Linarejos 6 2 D, Linares, Jaen, Spain Miguel Ángel Ribes Ripoll Avda. Pablo Neruda 120 F, 2°D, 28018 Madrid, Spain Franck Richard CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Mike J. Richardson Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, United Kingdom Víctor J. Rico Facultad de Farmacia, Universidad Complutense de Madrid, 28040 Madrid, Spain Gerardo Lucio Robledo Instituto Multidisciplinario de Biología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Casilla de Correo 495, 5000 Córdoba, Argentina Flavia Rodrigues Barbosa Universidade Federal de Mato Grosso, Av. Alexandre Ferronato, 1200, Setor Industrial, Sinop, Mato Grosso, Brazil Cristina Rodriguez-Caycedo UT Southwestern Medical Center, Dallas, Texas 75390, U.S.A. Pamela Rodriguez-Flakus W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Anna Ronikier W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Krakow, Poland Luis Rubio Casas Ul. Andrieja Sacharowa 1/1, 30-806 Kraków, Poland Katerina Rusevska Institute of Biology, Faculty of Natural Science and Mathematics, Ss. Cyril and Methodius University, Arhimedova 5, 1000 Skopje, Republic of Macedonia Günter Saar Dammenmühle 7, 77933 Lahr-Sulz, Germany Irja Saar Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Isabel Salcedo University of the Basque Country (UPV/EHU), Apdo 644, 48080 Bilbao, Spain Sergio M. Salcedo Martínez Facultad de Ciencias Biológicas, UANL. Ave. Pedro de Alba s/n esq. Manuel Barragán Cd. Universitaria, San Nicolás de los Garza Nuevo León, CP. 66451, Mexico Carlos A. Salvador Montoya Instituto de Botánica del Nordeste, Universidad Nacional de Nordeste-Consejo Nacional de Investigaciones Científicas y Técnicas, Sargento Cabral 2131, CC 209, Corrientes Capital, Argentina Santiago Sánchez-Ramírez University of Toronto, 100 Queen’s Park, Toronto, Ontario M5S 2C6, Canada J. Vladimir Sandoval-Sierra Health Science Centre, University of Tennessee, U.S.A. Sergi Santamaria Facultat de Biociències, Edifici C, Despatx C1/331, Campus de la UAB, 08193 Bellaterra, (Cerdanyola del Vallès), Barcelona, Spain Josiane Santana Monteiro Botany Coordination, Museu Paraense Emílio Goeldi, 66077-830, Belém, Pará, Brazil Hans Josef Schroers Agricultural Institute of Slovenia, Hacquetova ulica 17, 1000 Ljubljana, Slovenia Barbara Schulz Institute of Microbiology, Technische Universität Braunschweig, Germany Geert Schmidt-Stohn Burgstr. 25, 29553 Bienenbüttel, Germany Trond Schumacher University of Oslo, P.O.Box 1066, Blindern, 0316 Oslo, Norway Beatrice Senn-Irlet RU Biodiversity and Conservation Biology, Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstr. 111, 8903 Birmensdorf, Switzerland Hana Ševčíková Moravian Museum, Zeny trh 6, 659 37 Brno, Czech Republic Oleg Shchepin Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Takashi Shirouzu Graduate School of Bioresources, Mie University, 1577 Kurima-machiya, Tsu, Mie 514-8507, Japan Anton Shiryaev Institute of Plant & Animal Ecology Ural Branch of the Russian Academy of Sciences, 620144 Ekaterinburg, 8 March str., 202/3, Russia Klaus Siepe Geeste 133, 46342 Velen, Germany Esteban B. Sir Fundación Miguel Lillo, Consejo Nacional de Investigaciones Científicas y Técnicas, Miguel Lillo 251, San Miguel de Tucumán 4000, Tucumán, Argentina Mohammad Sohrabi Iranian Research Organization for Science and Technology, P.O. Box 33535111, Tehran, Iran Karl Soop Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Viacheslav Spirin Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Toby Spribille University of Alberta, Edmonton, Alberta T6G 2R3, Canada Marc Stadler Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany Joost Stalpers Torenlaan 43, 3742CR Baarn, The Netherlands Soili Stenroos Finnish Museum of Natural History, P.O. Box 7, 00014 University of Helsinki, Finland Ave Suija Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Stellan Sunhede Hökaskog Sandbacken 1, 533 92 Lundsbrunn, Sweden Sten Svantesson University of Gothenburg, Box 461, 40530 Göteborg, Sweden Sigvard Svensson Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Tatyana Yu. Svetasheva (1) Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia; (2) Department of Technologies of Living Systems, Tula State Lev Tolstoy Pedagogical University, Lenin ave. 125, Tula, 300026, Russia Krzysztof Świerkosz Museum of Natural History, Wrocław University, ul. H. Sienkiewicza 5, 50-335 Wrocław, Poland Heidi Tamm Institute of Ecology and Earth Sciences, 40 Lai Street, Tartu 51005, Estonia Hatira Taskin Faculty of Agriculture, University of Çukurova, 01330 Adana, Turkey Adrien Taudière CEFE UMR5175, CNRS, Université de Montpellier, Université Paul-Valéry Montpellier, EPHE, INSERM, 1919 Route de Mende, 34293 Montpellier Cédex 5, France Jan-Olof Tedebrand Sundsvall Mycological Society, Medelpad, Sweden Raúl Tena Lahoz C/Arreñales del Portillo B 21 1°D, 44003 Teruel, Spain Marina Temina Institute of Evolution, University of Haifa, Aba Khoushi Ave. 199, Mt. Carmel, Haifa 3498838, Israel Arne Thell Biological Museum, Lund University, Box 117, 221 00 Lund, Sweden Marco Thines Faculty of Biosciences, Goethe University Frankfurt am Main, Germany Göran Thor Swedish University of Agricultural Sciences, P. O. Box 7044, 750 07 Uppsala, Sweden Holger Thüs State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany Leif Tibell Evolutionary Biology Centre, Norbyvägen 18D, 75236 Uppsala, Sweden Sanja Tibell Evolutionary Biology Centre, Norbyvägen 18D, 75236 Uppsala, Sweden Einar Timdal Natural History Museum, University of Oslo, P.O. Box 1172 Blindern, 0318 Oslo, Norway Zdenko Tkalčec Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia Tor Tønsberg University of Bergen, Allégaten 41, P.O. Box 7800, 5020 Bergen, Norway Gérard Trichies 5, impasse des Écoles S7700 Neufchef, France Dagmar Triebel Botanische Staatssammlung München, Menzinger Straße 67, 80638 München, Germany Andrei Tsurykau (1) F. Skorina Gomel State University, Sovetskaja Str. 104, 246019 Gomel, Belarus; (2) Institute of Natural Sciences, Samara National Research University, Moskovskoye shosse 34, 443086 Samara, Russia Rodham E. Tulloss Herbarium Amanitarum Rooseveltensis, P. O. Box 57, Roosevelt, New Jersey 08555-0057, U.S.A. Veera Tuovinen University of Alberta, Edmonton, Alberta T6G 2R3, Canada Miguel Ulloa Sosa Universidad Nacional Autónoma de México, Tercer Circuito/Sin Número, Ciudad Universitaria, Ciudad de México, C. P. 04510, Mexico Carlos Urcelay Instituto Multidisciplinario de Biología Vegetal, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Córdoba, Casilla de Correo 495, 5000 Córdoba, Argentina François Valade 11 rue haras, le boqueteau, 91240 Saint-Michel-sur-Orge, France Ricardo Valenzuela Garza Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Prolongación de Carpio y Plan de Ayala s/n, Miguel Hidalgo, Santo Tomás, 11340 Ciudad de México, Mexico Pieter van den Boom Arafura 16, 5691 JA Son, The Netherlands Nicolas Van Vooren Ascomycete.org, 36 rue de la Garde, 69005 Lyon, France Aida M. Vasco-Palacios Escuela de Microbiología, Universidad de Antioquia, AA1226, Fundación Biodiversa Colombia, Medellín, Colombia Jukka Vauras Herbarium TUR, Biodiversity Unit, University of Turku, 20014 Turku, Finland Juan Manuel Velasco Santos 3 C/Pontevedra, 18, 1º C, 37003 Salamanca, Spain Else Vellinga 861 Keeler Avenue, Berkeley, California 94708, U.S.A. Annemieke Verbeken Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium Per Vetlesen Norges Sopp- og Nyttevekstforbund, Schweigaards gate 34F, 0191 Oslo, Norway Alfredo Vizzini University of Torino, Viale P.A. Mattioli 25, 10125, Torino, Italy Hermann Voglmayr University of Vienna, Rennweg 14, 1030 Vienna, Austria Sergey Volobuev Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia Wolfgang von Brackel Kirchenweg 2, 91341 Röttenbach, Germany Elena Voronina Lomonosov Moscow State University, Biology Faculty, Moscow, Russia Grit Walther Arvid-Harnack-Str. 4, 07743 Jena, Germany Roy Watling Royal Botanic Garden Edinburgh, 20A Inverleith Row, Edinburgh, EH3 5LR, United Kingdom Evi Weber Blaihofstr. 42, 72074 Tübingen, Germany Mats Wedin Swedish Museum of Natural History, P.O. Box 50007, 104 05 Stockholm, Sweden Øyvind Weholt Nord University, Nesna, 8700 Nesna, Norway Martin Westberg Museum of Evolution, Uppsala University, Norbyvägen 16, 75236 Uppsala, Sweden Eugene Yurchenko Polessky State University, Dnyaprouskai flatylii str. 23, 225710, Pinsk, Belarus Petr Zehnálek Faculty of Science, Charles University, Benátská 2, 128 01 Praha 2, Czech Republic Huang Zhang Kunming University of Science & Technology, Kunming, China Mikhail P. Zhurbenko Komarov Botanical Institute of the Russian Academy of Sciences, 2 Prof. Popov Street, St. Petersburg, 197376, Russia The following institutions are also supporting the present text (institutional support means that committees from the mentioned) Asociación Micológica Carlos Spegazzini (Argentina) Austrian Mycological Society (Austria) Croatian Mycological Society (Croatia) Committee of the Czech Scientific Society for Mycology (Czech Republic) The Netherlands Mycological Society (The Netherlands) Sociedad Española de Liquenología (Portugal/Spain) Iberian Mycological Society (which is under constitution, Portugal/Spain) Federación de Asociaciones Micológicas Andaluzas (FAMA) (Spain) Asociación Botánica y Micológica de Jaén (Spain) Asociación Micológica Hispalense Muscaria (Spain) Societat Micològica Valenciana (Spain)
- Published
- 2018
- Full Text
- View/download PDF
18. Micromphale sect. Perforantia (Agaricales, Basidiomycetes); Expansion and phylogenetic placement
- Author
-
Karen W. Hughes and Ronald H. Petersen
- Subjects
new species ,0301 basic medicine ,Agaricomycetes ,Gymnopus ,Phylogenetic tree ,Basidiomycota ,ecological species ,Fungi ,030108 mycology & parasitology ,Biology ,Sect ,biology.organism_classification ,new subsection ,taxonomy ,03 medical and health sciences ,030104 developmental biology ,MicromphaleFungi ,Omphalotaceae ,Botany ,Agaricales ,Ecology, Evolution, Behavior and Systematics - Abstract
DNA sequences show that the traditional genus Micromphale appears to be polyphyletic. Nuclear ribosomal LSU and ITS DNA sequences place Micromphale sect. Perforantia Singer (typus sect. M. perforans) within Gymnopus, comprising a clade sister to a mixture of traditional Gymnopus taxa including G. fusipes (typus generis) plus traditional Marasmius sect. Androsacei. This study enlarges sect. Perforantia and shows that sect. Perforantia is a clade separate from those including Micromphale sect. Micromphale and sect. Rhizomorphigena. A new subsection Pinophili is proposed to include new species G. pinophilus and G. ponderosae. Eleven taxa are accepted at species rank, of which nine are proposed as new, mostly morpho-taxa.
- Published
- 2016
- Full Text
- View/download PDF
19. New species of neotropical Rhodocollybia
- Author
-
Juan L. Mata, Clark L. Ovrebo, Timothy J. Baroni, and Karen W. Hughes
- Subjects
0301 basic medicine ,03 medical and health sciences ,Rhodocollybia ,biology ,Ecology ,Plant Science ,030108 mycology & parasitology ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2016
- Full Text
- View/download PDF
20. Pulverulina, a New Genus of Agaricales for Clitocybe ulmicola
- Author
-
Renée Lebeuf, Karen W. Hughes, Jacob Kalichman, and P. Brandon Matheny
- Subjects
0106 biological sciences ,Hydropus ,biology ,010604 marine biology & hydrobiology ,Decurrent ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Clitocybe ,Taxon ,Stipe (mycology) ,Genus ,Botany ,Basidiocarp ,Agaricales ,Ecology, Evolution, Behavior and Systematics - Abstract
A new genus, Pulverulina, is described to accommodate the monotypic lineage Clitocybe ulmicola in the Porotheleaceae. Pulverulina ulmicola is characterized by small, clitocyboid, pileate-stipitate basidiomata with a tough, pruinose stipe; distant decurrent lamellae; smooth inamyloid basidiospores; long, abundant caulocystidia; interwoven lamellar trama, and lignicolous habit on bark of living trees. A taxonomic description and illustrations are provided together with molecular phylogenetic analysis of 14 genera of Porotheleaceae. One new taxon and 3 new combinations are proposed: Pulverulina gen. nov. and Pulverulina ulmicola comb. nov., Hydropus rugosodiscus comb. nov., and Leucoinocybe auricoma comb. nov.
- Published
- 2020
- Full Text
- View/download PDF
21. Megaphylogeny resolves global patterns of mushroom evolution
- Author
-
Gergely J. Szöllősi, Kurt LaButti, Claudio Angelini, William Andreopoulos, Nikolett Rácz, Brigitta Kiss, Anton Shiryaev, Karen W. Hughes, Karl Soop, Igor V. Grigoriev, Csenge Földi, Tuula Niskanen, Viktória Bense, Machiel E. Noordeloos, Bálint Dima, Sándor Kocsubé, Anna Lipzen, Alfredo Justo, Wolfgang Dämon, József Geml, Jessie K. Uehling, Robin A. Ohm, Neale L. Bougher, Pam Catcheside, Péter Finy, Anton Savchenko, Dennis E. Desjardin, Bernardo Ernesto Lechner, Peter K. Buchanan, Sajeet Haridas, Csaba Vágvölgyi, Bart Buyck, David S. Hibbett, Francis Martin, Viacheslav Spirin, Tamás Papp, Jerry A. Cooper, Otto Miettinen, Heikki Kotiranta, Clark L. Ovrebo, Vladimír Antonín, Kerrie Barry, Marisol Sánchez-García, László Albert, Zoltán Lukács, Santiago Sánchez-Ramírez, Kare Liimatainen, Mansi Chovatia, Robert Riley, Krisztina Krizsán, Dariusz Karasiński, Beatriz Ortiz-Santana, Rodham E. Tulloss, Csilla Szebenyi, Sirma Mihaltcheva, Torda Varga, Louis N. Morgado, Michal Tomšovský, János Gergő Szarkándi, Ivona Kautmanová, László Nagy, Viktor Papp, Hungarian Academy of Sciences (MTA), Eötvös Loránd University (ELTE), Clark University, University of Toronto, University of Szeged, Szent István University, Hungarian Mycological Society, United States Department of Energy, Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Moravian Museum, Western Australian Herbarium, Manaaki Whenua – Landcare Research [Lincoln], Sorbonne Université (SU), Centre National de la Recherche Scientifique (CNRS), Institut de Systématique, Evolution, Biodiversité (ISYEB ), Muséum national d'Histoire naturelle (MNHN)-École pratique des hautes études (EPHE), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA), State Herbarium South Australia, San Francisco State University (SFSU), National Biodiversityt Center, University of Tennessee, Polska Akademia Nauk = Polish Academy of Sciences (PAN), Slovak National Museum, Finnish Environment Institute (SYKE), Universidad de Buenos Aires (UBA), Royal Botanic Gardens, University of Oslo (UiO), Utrecht University [Utrecht], US Forest Service, University of Oklahoma (OU), University of Helsinki, University of Tartu, the Russian Academy of Sciences [Moscow, Russia] (RAS), Swedish Museum of Natural History (NRM), MTA Centre for Ecological Research, Mendel University in Brno (MENDELU), Herbarium Amanitarum Rooseveltensis, New York Botanical Garden (NYBG), University of California [Berkeley], University of California, Interactions Arbres-Microorganismes (IAM), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Momentum Program of the Hungarian Academy of Sciences LP2014/12, European Research Council (ERC) 758161, United States Department of Energy (DOE) DE-AC02-05CH11231, National Talent Program NTP-NFTO-17-B-0337, New National Excellence Program of the Ministry of Human Capacities UNKP-18-3, Straub Young Scientist scholarship from the Biological Research Centre, Hungarian Academy of Sciences, Moravian Museum by the Ministry of Culture of the Czech Republic (DKRVO) MK000094862, Nagy, László G, Manaaki Whenua Landcare Research, Sorbonne Université, Muséum National d’Histoire Naturelle (MNHN), Polish Academy of Sciences, Russian Academy of Sciences (Moscow) (RAS), Mendel University in Brno, Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Sub Molecular Microbiology, Molecular Microbiology, and Botany
- Subjects
0106 biological sciences ,0301 basic medicine ,Lineage (evolution) ,[SDV]Life Sciences [q-bio] ,champignon ,DIVERSITY ,phylogeny ,01 natural sciences ,Decomposer ,purl.org/becyt/ford/1 [https] ,PHYLOGENETIC ANALYSIS ,R PACKAGE ,1183 Plant biology, microbiology, virology ,Phylogeny ,2. Zero hunger ,Genome ,biology ,Ecology ,EXTINCTION RATES ,ADAPTIVE RADIATION ,Fungal ,EXPLOSIVE DIVERSIFICATION ,1181 Ecology, evolutionary biology ,Molecular phylogenetics ,Micología ,Genome, Fungal ,CIENCIAS NATURALES Y EXACTAS ,Evolution ,histoire évolutive ,education ,010603 evolutionary biology ,Agaricomycetes ,Article ,Ciencias Biológicas ,LIKELIHOOD ,03 medical and health sciences ,Behavior and Systematics ,Phylogenetics ,phylogénie moléculaire ,phylogénie ,purl.org/becyt/ford/1.6 [https] ,SPECIATION ,Ecology, Evolution, Behavior and Systematics ,Extinction event ,Key innovation ,Extinction ,AGARICOMYCETES ,FORMING FUNGI ,fungi ,Genetic Variation ,BINARY ,15. Life on land ,biology.organism_classification ,030104 developmental biology ,13. Climate action ,arbre phylogénétique ,MEGAPHYLOGENY ,Agaricales ,evolutionary history ,basidiomycete - Abstract
Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding. Fil: Varga, Torda. Hungarian Academy Of Sciences; Hungría Fil: Krizsán, Krisztina. Hungarian Academy Of Sciences; Hungría Fil: Földi, Csenge. Hungarian Academy Of Sciences; Hungría Fil: Dima, Bálint. Eötvös Loránd University; Hungría Fil: Sánchez-García, Marisol. Clark University; Estados Unidos Fil: Lechner, Bernardo Ernesto. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Micología y Botánica. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Micología y Botánica; Argentina Fil: Sánchez-Ramírez, Santiago. University of Toronto; Canadá Fil: Szöllosi, Gergely J.. Eötvös Loránd University; Hungría Fil: Szarkándi, János G.. University Of Szeged; Hungría Fil: Papp, Viktor. Szent István University; Hungría Fil: Albert, László. Hungarian Mycological Society; Hungría Fil: Andreopoulos, William. United States Department Of Energy. Joint Genome Institute; Estados Unidos Fil: Angelini, Claudio. Jardin Botanico Nacional Ma. Moscoso; República Dominicana Fil: Antonín, Vladimír. Moravian Museum; República Checa Fil: Barry, Kerrie W.. United States Department Of Energy. Joint Genome Institute; Estados Unidos Fil: Bougher, Neale L.. Western Australian Herbarium; Australia Fil: Buchanan, Peter. Manaaki Whenua-landcare Research; Nueva Zelanda Fil: Buyck, Bart. Muséum National d'Histoire Naturelle; Francia Fil: Bense, Viktória. Hungarian Academy Of Sciences; Hungría Fil: Catcheside, Pam. State Herbarium Of South Australia; Australia Fil: Chovatia, Mansi. United States Department Of Energy. Joint Genome Institute; Estados Unidos Fil: Cooper, Jerry. Manaaki Whenua-landcare Research; Nueva Zelanda Fil: Dämon, Wolfgang. Oberfeldstrasse 9; Austria Fil: Desjardin, Dennis. San Francisco State University; Estados Unidos Fil: Finy, Péter. Zsombolyai U. 56.; Hungría Fil: Geml, József. Naturalis Biodiversity Center; Países Bajos Fil: Haridas, Sajeet. United States Department Of Energy. Joint Genome Institute; Estados Unidos Fil: Hughes, Karen. University of Tennessee; Estados Unidos Fil: Justo, Alfredo. Clark University; Estados Unidos Fil: Karasinski, Dariusz. Polish Academy of Sciences; Polonia
- Published
- 2019
- Full Text
- View/download PDF
22. Two additional species of Gymnopus (Euagarics, Basidiomycotina)
- Author
-
Karen W. Hughes and Ronald H. Petersen
- Subjects
0106 biological sciences ,Agaricomycetes ,Gymnopus ,Biology ,010603 evolutionary biology ,01 natural sciences ,Marasmius ,030308 mycology & parasitology ,03 medical and health sciences ,taxonomy ,Sensu ,Phylogenetics ,Fungal barcode ,lcsh:Botany ,Omphalotaceae ,Botany ,Animalia ,Ecology, Evolution, Behavior and Systematics ,Sensu stricto ,0303 health sciences ,Phylogenetic tree ,Basidiomycota ,Fungi ,biology.organism_classification ,lcsh:QK1-989 ,phylogenetics ,Taxonomy (biology) ,Americas ,Agaricales ,Research Article - Abstract
For more than a decade, a combination of molecular phylogenetic analyses and morphological characterisation has led to a renovation of the Omphalotaceae, especially of Gymnopus sensu lato. Numerous new genera have been proposed, but Gymnopus sensu stricto has also seen an accretion of species and species complexes. In this manuscript, two species are added to Gymnopus sensu stricto within Section Androsacei.
- Published
- 2019
23. Ornamental Species
- Author
-
Karen W. Hughes
- Published
- 2018
- Full Text
- View/download PDF
24. First report of the post-fire morel Morchella exuberans in eastern North America
- Author
-
Karen W. Hughes, P. Brandon Matheny, Kerry O'Donnell, Teresa Iturriaga, Matthias Gube, Daniel B. Raudabaugh, Timothy Y. James, Ronald H. Petersen, Rob A Powers, and Andrew N. Miller
- Subjects
0301 basic medicine ,Michigan ,Physiology ,Biogeography ,Biology ,Fires ,03 medical and health sciences ,Ascomycota ,Peninsula ,DNA, Ribosomal Spacer ,Genetics ,Cluster Analysis ,Internal transcribed spacer ,Clade ,DNA, Fungal ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,Morchella exuberans ,geography ,geography.geographical_feature_category ,Phylogenetic tree ,National park ,Ecology ,Cell Biology ,General Medicine ,Sequence Analysis, DNA ,030108 mycology & parasitology ,15. Life on land ,Morchella ,Tennessee ,RNA, Ribosomal, 5.8S - Abstract
Reports of true morels (Morchella) fruiting on conifer burn sites are common in western North America where five different fire-adapted species of black morels (Elata Clade) have been documented based on multilocus phylogenetic analyses. Fruiting of post-fire morels in eastern North America, by comparison, are rare and limited to a report from Minnesota in 1977 and eastern Ontario in 1991. Here, nuc rDNA internal transcribed spacer (ITS1-5.8S-ITS2 = ITS) sequences were used to identify the post-fire morel that fruited in great abundance the year following the 2012 Duck Lake Fire in the Upper Peninsula of Michigan and after the 2016 large-scale fire in the Great Smoky Mountains National Park in Tennessee as M. exuberans. A preliminary phylogenetic analysis suggests that the collections from eastern North America may be more closely related to those from Europe than from western North America, Europe, and China.
- Published
- 2018
25. Intragenomic nuclear RNA variation in a cryptic Amanita taxon
- Author
-
Rodham H. Tulloss, Karen W. Hughes, and Ronald H. Petersen
- Subjects
0106 biological sciences ,0301 basic medicine ,Amanita ,Costa Rica ,Physiology ,010603 evolutionary biology ,01 natural sciences ,DNA, Mitochondrial ,DNA, Ribosomal ,03 medical and health sciences ,RNA, Ribosomal, 16S ,DNA, Ribosomal Spacer ,RNA, Ribosomal, 28S ,Genetics ,Cluster Analysis ,Gene conversion ,DNA, Fungal ,Molecular Biology ,Mexico ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,RNA, Nuclear ,Concerted evolution ,biology ,RNA ,Genetic Variation ,RNA, Fungal ,Cell Biology ,General Medicine ,Sequence Analysis, DNA ,030108 mycology & parasitology ,biology.organism_classification ,RNA, Ribosomal, 23S ,Taxon ,Evolutionary biology ,North America ,RNA Polymerase II - Abstract
Amanita cf. lavendula collections in eastern North America, Mexico, and Costa Rica were found to consist of four cryptic taxa, one of which exhibited consistently unreadable nuclear rDNA ITS1-5.8S-ITS2 (fungal barcode) sequences after ITS1 base 130. This taxon is designated here as Amanita cf. lavendula taxon 1. ITS sequences from dikaryotic basidiomata were cloned, but sequences recovered from cloning did not segregate into distinct haplotypes. Rather, there was a mix of haplotypes that varied among themselves predominantly at 28 ITS positions. Analysis of each of these 28 variable bases showed predominantly two alternate bases at each position. Based on these findings and additional sequence data from the nuclear rDNA 28S, RNA polymerase II subunit 2 (RPB2) and mitochondrial rDNA small subunit (SSU) and 23S genes, we speculate that taxon 1 represents an initial hybridization event between two divergent taxa followed by failure of the ribosomal repeat to homogenize. Homogenization failure may be a result of repeated hybridization between divergent internal transcribed spacer (ITS) types with inadequate time for concerted evolution of the ribosomal repeat or, alternately, a complete failure of the ribosomal homogenization process. To our knowledge, this finding represents the first report of a geographically widespread taxon (Canada, eastern USA, Costa Rica) with apparent homogenization failure across all collections. Findings such as these have implications for fungal barcoding efforts and the application of fungal barcodes in identifying environmental sequences.
- Published
- 2018
- Full Text
- View/download PDF
26. Where are they hiding? Testing the body snatchers hypothesis in pyrophilous fungi
- Author
-
Malcolm L. Sargent, Daniel B. Raudabaugh, Karen W. Hughes, Teresa Iturriaga, P. Brandon Matheny, and Andrew N. Miller
- Subjects
0106 biological sciences ,Ecology ,biology ,Range (biology) ,National park ,Ecological Modeling ,Plant Science ,Fungus ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Moss ,Taxon ,Bryophyte ,Fire ecology ,Lichen ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
Pyrophilous fungi produce sporocarps after a fire but little is known about their ecology prior to or after a fire event. Recently, the body snatchers hypothesis was proposed that suggests some post-fire fungi form endophytic and/or endolichenic relationships with plants and lichens. To test the body snatchers hypothesis, bryophyte, lichen, club moss, and soil samples were collected from unburned and mixed-intensity burned areas 1–2 y after a 2016 wildfire in the Great Smoky Mountains National Park, and from unburned areas in four states outside the park. Samples were examined for the presence of pyrophilous fungi occurring as endophytes or in lichens using culture-dependent and culture-independent techniques. Culture-dependent methods isolated Pholiota highlandensis, a known pyrophilous fungus, from five bryophyte samples. Culture-independent methods identified 22 pyrophilous taxa from bryophyte, club moss, lichen, and soil samples across a range of geographical localities. The ‘body snatchers’ hypothesis is supported since many bryophyte, lichen, and club moss samples contained pyrophilous taxa suggesting that these fungi occur as endophytes and/or endolichenic fungi until a fire event triggers them to produce sporocarps.
- Published
- 2020
- Full Text
- View/download PDF
27. Two new species of Ramaria from Arkansas
- Author
-
Jay Justice, Ronald H. Petersen, and Karen W. Hughes
- Subjects
biology ,Ecology ,Agroforestry ,Ramaria ,biology.organism_classification ,Ozark Plateau ,lcsh:QK1-989 ,taxonomy ,Geography ,dendrophysoid hyphae ,lcsh:Botany ,Taxonomy (biology) ,Ecology, Evolution, Behavior and Systematics ,Laeticolora - Abstract
Two species of Ramaria from the Ozark region of Arkansas, USA, R. admiratia and R. calvodistalis, are proposed as new. They are described morphologically and placed molecularly within a large clade including taxa of ramarioid and cantharelloid fungi.
- Published
- 2014
28. Transatlantic disjunction in fleshy fungi. I. The Sparassis crispa complex
- Author
-
Karen W. Hughes, Ronald H. Petersen, and Ana Reboredo Segovia
- Subjects
Monophyly ,Taxon ,Sparassis crispa ,biology ,Biogeography ,Botany ,Ploidy ,biology.organism_classification ,Clade ,Agricultural and Biological Sciences (miscellaneous) ,Ecology, Evolution, Behavior and Systematics ,Monokaryon ,Hybrid - Abstract
Phylogenies based on ITS and LSU sequences show that the Sparassis crispa complex comprises several monophyletic clades, in some cases co\rresponding to named taxa (i.e. S. crispa, S. radicata), but others lacking names (i.e. eastern and southwestern North American S. “crispa”). In our study, morphological examination of numerous collections also distinguished subtle differences correlated with geographic distribution. Underlying these problems, several taxa lacked type specimens for taxonomic analysis. In this paper, appropriate epitypes are designated and names assigned. Extensive sexual compatibility experiments, described within, indicate that monokaryon, haploid isolates of collections from North America and Europe are consistently sexually compatible to some degree. Inherent in the study, different “species concepts” were tested, with the “biological species concept,” based on sexual compatibility, being the least restrictive. We propose two new taxa, S. americana and S. americana f. arizonica.
- Published
- 2013
- Full Text
- View/download PDF
29. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- Author
-
Martin Grube, Gi-Ho Sung, Tom W. May, Ursula Eberhardt, Franck O.P. Stefani, Filip Högnabba, Dirk Redecker, Peter M. Hollingsworth, Kwang Deuk An, M. Teresa Telleria, Yuuri Hirooka, Tamás Petkovits, Paul Harrold, Bevan S. Weir, E. B. Gareth Jones, Wen Chen, László Nagy, Kerstin Hoffmann, Imke Schmitt, Ferry Hagen, Robert W. Barreto, Agathe Vialle, Satinee Suetrong, Javier Diéguez-Uribeondo, Grit Walther, Steven D. Leavitt, Andrew N. Miller, Kazuyuki Hirayama, Andrey Yurkov, Michael J. Wingfield, Sara Landvik, Tuan A. Duong, Dániel G. Knapp, Merlin M. White, Ibai Olariaga, Ana Rosa Burgaz, Herbert Stockinger, Mesfin Bogale, Pedro W. Crous, M. Catherine Aime, Keith A. Seifert, Constantino Ruibal, Wen Ying Zhuang, Katerina Fliegerova, Paul M. Kirk, Zai-Wei Ge, Marizeth Groenewald, Laura J. Kelly, Peter R. Johnston, K. Griffiths, Urmas Kõljalg, Kozue Sotome, Jean-Marc Moncalvo, Gábor M. Kovács, Seung-Beom Hong, W. Quaedvlieg, Duckchul Park, Cesar S. Herrera, Richard C. Hamelin, Joan E. Edwards, Ning Zhang, Timothy Y. James, Raquel Pino-Bodas, John L. Spouge, Sabine M. Huhndorf, Arthur Schüßler, Conrad L. Schoch, Ruth Del-Prado, Sajeewa S. N. Maharachchikumbura, J. Jennifer Luangsa-ard, Hector Urbina, Michael Weiß, Dominik Begerow, Elena Bolchacova, Gen Okada, Andrew S. Methven, Joan E. Johnson, Qing Cai, Carol A. Shearer, Gianluigi Cardinali, Priscila Chaverri, Thuy Duong Vu, Tuula Niskanen, Rebecca Yahr, Z. Wilhelm de Beer, Kazuaki Tanaka, Leho Tedersoo, Csaba Vágvölgyi, María P. Martín, Gregory Heller, Hsiao Man Ho, Kentaro Hosaka, Eric D. Tretter, Wiel Meyer, Johannes Z. Groenewald, Harinad Maganti, C. André Lévesque, Yan Wang, Vincent Robert, Miguel A. García, H. Thorsten Lumbsch, Jürgen Otte, Manohar R. Furtado, Juan Carlos Zamora, Craig Cummings, Mostafa S. Elshahed, Feng-Yan Bai, Kevin D. Hyde, Tara L. Rintoul, Brian Douglas, Jos Houbraken, Karen W. Hughes, Qi Ming Wang, David Schindel, Motofumi Suzuki, Kerstin Voigt, Lei Cai, Suchada Mongkolsamrit, Zhu L. Yang, Sung-Oui Suh, Kare Liimatainen, Huzefa A. Raja, Seppo Huhtinen, B. Stielow, Audra S. Liggenstoffer, Wendy A. Untereiner, Jianping Xu, Ana Crespo, Brian J. Coppins, Cletus P. Kurtzman, R. Henrik Nilsson, Liang-Dong Guo, Paloma Cubas, Izumi Okane, Soili Stenroos, Jullie M. Sarmiento-Ramírez, Bart Buyck, Lorenzo Lombard, Alistair R. McTaggart, Gareth W. Griffith, Teun Boekhout, Marieka Gryzenhout, G. Sybren de Hoog, Karen Hansen, Nattawut Boonyuen, Margarita Dueñas, Eric M. Johnson, Valérie Hofstetter, Marie Josée Bergeron, Ulrike Damm, Tamás Papp, Pradeep K. Divakar, Meredith Blackwell, Sarah Hambleton, Bryn T. M. Dentinger, Ildikó Nyilasi, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food [Ottawa] (AAFC), Field Museum, Royal Netherlands Academy of Arts and Sciences (KNAW), Agroécologie [Dijon], Institut National de la Recherche Agronomique (INRA)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement, and Ontario Genomics Institute
- Subjects
ectomycorrhizal fungi ,[SDV]Life Sciences [q-bio] ,arbuscular mycorrhizal fungi ,dna ,basidiomycetous yeasts ,Biology ,Polymerase Chain Reaction ,DNA barcoding ,18S ribosomal RNA ,03 medical and health sciences ,ribosomal ,Species Specificity ,species recognition ,Cistron ,sequence-analysis ,28S ribosomal RNA ,DNA, Ribosomal Spacer ,DNA barcode ,DNA Barcoding, Taxonomic ,Letters ,subunit ,Internal transcribed spacer ,DNA, Fungal ,phylogenetic-relationships ,Phylogeny ,030304 developmental biology ,Cell Nucleus ,2. Zero hunger ,Genetics ,0303 health sciences ,Multidisciplinary ,030306 microbiology ,EPS-4 ,Fungi ,Intron ,Fungal genetics ,Reproducibility of Results ,rdna ,Ribosomal RNA ,Laboratorium voor Phytopathologie ,nuclear ,rpb1 sequences ,[SDE]Environmental Sciences ,Laboratory of Phytopathology ,ta1181 ,intragenomic variation - Abstract
Se evaluaron seis regiones de ADN como posibles códigos de barras de ADN para Hongos, el segundo reino más grande de vida eucariota, por un consorcio multinacional y de laboratorios múltiples. La región de la mitocondria se utilizó la subunidad 1 de la citocromo c oxidasa como código de barras animal excluido como un marcador potencial, porque es difícil de amplificar en hongos, a menudo incluye intrones grandes y puede ser insuficientemente variable. Tres subunidades del cistrón de ARN ribosómico nuclear fueron en comparación con las regiones de tres genes de codificación proteica representativos (la subunidad más grande de la ARN polimerasa II, la segunda más grande subunidad de la ARN polimerasa II y mantenimiento de minicromosomas proteína). Aunque las regiones de genes que codifican proteínas a menudo tenían un porcentaje más alto de identificación correcta en comparación con ribosomal marcadores, baja amplificación por PCR y éxito de secuenciación eliminados ellos como candidatos para un código de barras universal para hongos. Entre la regiones del cistrón ribosómico, el espaciador transcrito interno (ITS) tiene la mayor probabilidad de identificación exitosa para la gama más amplia de hongos, con la brecha de código de barras más claramente definida entre la variación inter e intraespecífica. El nuclear subunidad ribosómica grande, un marcador filogenético popular en ciertos grupos, tuvieron una resolución de especies superior en algunos grupos taxonómicos, como los primeros linajes divergentes y las levaduras ascomicetas, pero por lo demás era ligeramente inferior al ITS. El ribosomal nuclear La subunidad pequeña tiene una resolución pobre a nivel de especie en los hongos. SU será propuesto formalmente para su adopción como el código de barras fúngico principal marcador al Consorcio para el Código de Barras de la Vida, con la posibilidad de que se desarrollen códigos de barras suplementarios para grupos taxonómicos estrechamente circunscritos., Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the mitochondrial cytochrome c oxidase subunit 1 used as the animal barcode was excluded as a potential marker, because it is difficult to amplify in fungi, often includes large introns, and can be insufficiently variable. Three subunits from the nuclear ribosomal RNA cistron were compared together with regions of three representative proteincoding genes (largest subunit of RNA polymerase II, second largest subunit of RNA polymerase II, and minichromosome maintenance protein). Although the protein-coding gene regions often had a higher percent of correct identification compared with ribosomal markers, low PCR amplification and sequencing success eliminated them as candidates for a universal fungal barcode. Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation. The nuclear ribosomal large subunit, a popular phylogenetic marker in certain groups, had superior species resolution in some taxonomic groups, such as the early diverging lineages and the ascomycete yeasts, but was otherwise slightly inferior to the ITS. The nuclear ribosomal small subunit has poor species-level resolution in fungi. ITS will be formally proposed for adoption as the primary fungal barcode marker to the Consortium for the Barcode of Life, with the possibility that supplementary barcodes may be developed for particular narrowly circumscribed taxonomic groups.
- Published
- 2012
- Full Text
- View/download PDF
30. Amyloidity is not diagnostic for species in the Mycena pearsoniana complex (Mycena sectio Calodontes)
- Author
-
Karen W. Hughes, D. Jean Lodge, Ronald H. Petersen, Tobias Guldberg Frøslev, Joaquín Cifuentes Blanco, Thomas Læssøe, and Christoffer Bugge Harder
- Subjects
Systematics ,biology ,Phylogenetic tree ,fungi ,Holotype ,Zoology ,Decurrent ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Mycena ,Botany ,Type locality ,Clade ,Amyloid (mycology) ,Ecology, Evolution, Behavior and Systematics - Abstract
In Mycena sectio Calodontes with otherwise amyloid spores, the inamyloid spores of Mycena pearsoniana Dennis ex Singer were a distinguishing feature for this species and its subsection Violacella. Although the original concept of this species was European, Singer chose to typify it with material collected in Mexico. The name has since been applied to all European collections with inamyloid spores and decurrent lamellae. Our phylogenetic analysis of 91 ITS sequences from European, North and South American Calodontes collections shows that European collections identified as M. pearsoniana fall into two well-supported sibling clades together with both inamyloid and weakly amyloid North American collections. Since the holotype of M. pearsoniana is in an advanced state of decay, we have selected an epitype from a North American locality with a climate comparable to the Mexican type locality. Our results show weakly and inamyloid spore reactions to be homoplastic in Calodontes, and furthermore that spores of M. pearsoniana can show either amyloid or inamyloid reactions interchangeably. This raises doubt about the taxonomic value of this trait in Mycena systematics.
- Published
- 2011
- Full Text
- View/download PDF
31. Three new species of Tricholoma from Costa Rica
- Author
-
Roy E. Halling, Karen W. Hughes, and Clark L. Ovrebo
- Subjects
0106 biological sciences ,0301 basic medicine ,Species complex ,biology ,Tricholoma ,Plant Science ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,030104 developmental biology ,Taxon ,Convergent evolution ,Botany ,Montane ecology ,Tricholoma luteomaculosum ,Pileus ,Ecology, Evolution, Behavior and Systematics - Abstract
Three new species of Tricholoma are described from Costa Rican montane forests with additional collections cited from the United States. The new species are Tricholoma felschii sp. nov., Tricholoma costaricense sp. nov . and Tricholoma atratum sp. nov . A discussion of Tricholoma luteomaculosum is also included. These taxa share morphological features of strong farinaceous odor and taste, pseudoparenchymatous pileal subcutis, and rugulose pileus at some stage of development. In addition, cheilocystidia occur in two of the taxa but not the third. Phylogenies are presented based on ITS sequences.
- Published
- 2019
- Full Text
- View/download PDF
32. Relationships within Lentinus subg. Lentinus (Polyporales, Agaricomycetes), with emphasis on sects. Lentinus and Tigrini
- Author
-
Ronald H. Petersen, Edward A. Grand, and Karen W. Hughes
- Subjects
Systematics ,Monophyly ,Taxon ,biology ,Sensu ,Panus ,Botany ,Lentinus ,Polyporales ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Ecology, Evolution, Behavior and Systematics ,Agaricomycetes - Abstract
Representatives of Lentinus subg. Lentinus sensu Pegler (sects. Lentinus and Tigrini) were evaluated using ribosomal ITS-1-5.8 S-ITS2 sequence data, sexual intercompatibility studies and morphological analysis. Members of sects. Dicholamellatae, Rigidi and Lentodiellum sensu Pegler were also included in the study, but in much smaller numbers. All included sections were shown to be monophyletic with respect to the taxa sampled. While no biogeographical pattern was observed in sect. Lentinus, L. tigrinus (sect. Tigrini) produced a strong phylogeographic signal. Taxa of the related Polyporus “group Polyporellus” sensu Nunez and Ryvarden representing two clades were included in this study. Synonymy of Lentinus lindquistii under L. tigrinus is suggested based on sexual intercompatibility studies and molecular data.
- Published
- 2010
- Full Text
- View/download PDF
33. The delimitation of Flammulina fennae
- Author
-
Slavomír Adamčík, Karen W. Hughes, Viktor Kučera, Katarína Adamčíková, and Soňa Ripková
- Subjects
Taxon ,Intergenic region ,biology ,Phylogenetic tree ,GenBank ,Botany ,Taxonomy (biology) ,Ribosomal RNA ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Ecology, Evolution, Behavior and Systematics ,DNA sequencing ,Flammulina - Abstract
Multivariate morphometric analyses of micromorphological characters measured on 35 specimens of Flammulina fennae and related species show that only a combination of spore dimensions and ixohyphidia characters are suitable for delimitation of this species. In order to confirm species identifications based on micromorphology, ribosomal ITS DNA sequences were obtained and compared with those previously deposited in GenBank, and phylogenetic analyses were performed using an ITS dataset of all known Flammulina species. All six specimens morphologically determined as F. fennae were identified by molecular data. Two of twelve specimens morphologically assigned to F. velutipes had F. elastica sequences. One ITS sequence of F. velutipes appears to be a hybrid: the ITS1 region is homologous to F. velutipes and ITS2 is homologous to another Flammulina species, F. rossica. Variability of morphocharacters observed for F. fennae and related species is discussed and compared with the data from previous studies. A key is provided to European taxa of the genus Flammulina together with a full description of F. fennae.
- Published
- 2010
- Full Text
- View/download PDF
34. Using heterozygosity to estimate a percentage DNA sequence similarity for environmental species’ delimitation across basidiomycete fungi
- Author
-
Edgar B. Lickey, Karen W. Hughes, and Ronald H. Petersen
- Subjects
Genetics ,Heterozygote ,Base Sequence ,Physiology ,Basidiomycota ,Genetic Variation ,Biodiversity ,Plant Science ,Biology ,DNA sequencing ,Loss of heterozygosity ,Species Specificity ,Similarity (network science) ,Evolutionary biology ,Sequence Homology, Nucleic Acid ,Databases, Genetic ,Environmental Microbiology ,DNA, Intergenic ,Fruiting Bodies, Fungal ,DNA, Fungal - Published
- 2009
- Full Text
- View/download PDF
35. Molecular phylogenies and mating study data in Polyporus with special emphasis on group 'Melanopus' (Basidiomycota)
- Author
-
Dirk Krüger, Karen W. Hughes, and Ronald H. Petersen
- Subjects
Herbarium ,Phylogenetic tree ,Polyporus umbellatus ,Phylogenetics ,Zoology ,Ribosomal RNA ,Biology ,Internal transcribed spacer ,Mating system ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Ecology, Evolution, Behavior and Systematics ,Polyporus - Abstract
“Melanopus” is an unranked infrageneric group within Polyporus, a genus comprising wood-decaying homobasidiomycetes. This study compiles new information on the mating systems, phylogeny, and geographic distribution of the group. We report tetrapolar mating systems in “Melanopus,” as well as in the more distantly related Polyporus umbellatus. “Melanopus” is addressed using internal transcribed spacer (ITS) rDNA sequence data, comparing resolving power of several phylogenetic methods and depths of sequence information, including recoded secondary structure data informed by the primary sequence data. The latter, inferred structure of the ITS2 rRNA was insufficient in phylogenetic reconstruction on its own. Intercollection compatibility studies showed Polyporus varius collections from both sides of the Atlantic to be intercompatible, the same was found for Polyporus tubaeformis collections from California and Scotland. Molecular analysis supports P. tubaeformis conspecifity of Scottish and Californian collections with a Norwegian collection. Several other herbarium specimens inaccessible to successful PCR and sequencing were redetermined as P. tubaeformis by morphological characters. This improved on the current knowledge of distribution of the species, tentatively adding Idaho, North Carolina, and Germany’s Mecklenburg-Western Pomerania.
- Published
- 2007
- Full Text
- View/download PDF
36. Some agaric distribution patterns involving Pacific landmasses and Pacific Rim
- Author
-
Ronald H. Petersen and Karen W. Hughes
- Subjects
Ecological niche ,Geographic area ,Ecology ,Insular biogeography ,business.industry ,Pacific Rim ,Agaric ,Distribution (economics) ,Biology ,biology.organism_classification ,Pacific ocean ,Phylogeography ,business ,Ecology, Evolution, Behavior and Systematics - Abstract
The Pacific Ocean and the “Pacific Rim” include a vast geographic area and most categories of the earth's ecological niches. As could be expected, macrofungi conform to many distribution patterns, some of which are discussed in this article. An introduction to species concepts and some other ancillary methodological considerations is followed by examples of some distributional patterns: Gondwanan, Transberingian, and island biogeographic. Some considerations of changing distributional patterns are also discussed: widening distributions, probable human mediation, and some unique cases that seem not to conform to accepted patterns. Not surprisingly, we conclude that concerted future collecting and comparison of specimens using multiple methodologies offer the only hope for understanding mushroom distributions, regardless of the geographic area of interest.
- Published
- 2007
- Full Text
- View/download PDF
37. Cloning of ribosomal ITS PCR products creates frequent, non-random chimeric sequences – a test involving heterozygotes between Gymnopus dichrous taxa I and II
- Author
-
Samuel D. Morris, Karen W. Hughes, Ana L. Reboredo-Segovia, Department of Ecology and Evolutionary Biology, The University of Tennessee [Knoxville], Tennesse State University, Nashville, and Université Pierre et Marie Curie - Paris 6 (UPMC)
- Subjects
Agaricomycetes ,Gymnopus ,Biology ,law.invention ,chimera ,Chimera (genetics) ,law ,lcsh:Botany ,Omphalotaceae ,Gymnopus dichrous ,Ecology, Evolution, Behavior and Systematics ,Genetics ,Cloning ,hybrid ,Basidiomycota ,Haplotype ,Fungi ,Heterozygote advantage ,Ribosomal RNA ,Basidiomycete fungi ,recombination ,lcsh:QK1-989 ,ribosomal repeat ,Taxon ,monokaryons ,Recombinant DNA ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Agaricales ,Recombination - Abstract
Gymnopus dichrous exists in the southern Appalachians (USA) as two distinct entities with essentially identical nuclear ribosomal ITS1 sequences but differing ITS2 and LSU sequences (for convenience, called G. dichrous I and II). F1 ITS heterozygotes between the two are routinely collected from nature. Cloning of ITS PCR products from F1 heterozygotes produced sequences of both parental haplotypes but also numerous chimeric sequences (21.9%). The location of template switching was non-random leading to recovery of the same chimera several times and the chimeric region varied from 45bp to 300bp. By comparison, single-basidiospore isolates from heterozygote F1 fruitbodies showed no recombinant haplotypes within the ITS + LSU span and clones derived from P1 homozygotes were identical to the P1 parent. Thus, chimeric sequences are likely an artifact of the PCR-cloning process and not a consequence of natural recombination events found in nature, nor are they due to hidden existing variation within the ribosomal repeat. Chimeras and PCR-induced mutations are common in cloned PCR products and may result in incorrect sequence information in public databases.
- Published
- 2015
- Full Text
- View/download PDF
38. Transatlantic disjunction in fleshy fungi. II. The Sparassis spathulata – S. brevipes complex
- Author
-
Ana Reboredo Segovia, Karen W. Hughes, Jan Borovička, and Ronald H. Petersen
- Subjects
Systematics ,Phylogeography ,Taxon ,Phylogenetic tree ,Sparassis spathulata ,Botany ,Zoology ,Taxonomy (biology) ,Biology ,Agricultural and Biological Sciences (miscellaneous) ,Sparassis brevipes ,Ecology, Evolution, Behavior and Systematics - Abstract
Taxo-nomenclaturally, transatlantic disjunctions among fleshy fungi take two forms: 1) the same name is used on both continents, but the phylotaxonomic congruity of the organisms is questionable; and 2) different names are used, but whether they refer to the same or different organisms is questionable. This paper takes up an example of the latter case, where the European representative is known as Sparassis brevipes (or S. nemecii) and the American as S. spathulata (or S. herbstii). Phylogenetic placement shows that European and North American entities differ and that different names are appropriate. The study further shows that S. nemecii is a morphological variant of S. brevipes and that S. herbstii likewise appears to be a morphological variant of S. spathulata. In order to bring taxonomic stability to this taxonomic complex, S. brevipes is typified, epitypes are designated for S. nemecii and S. spathulata, and all taxa are redescribed. Two new combinations are proposed: S. brevipes f. nemecii and S. spathulata f. herbstii.
- Published
- 2015
- Full Text
- View/download PDF
39. The Xeromphalina campanella/kauffmanii complex: species delineation and biogeographical patterns of speciation
- Author
-
Ronald H. Petersen, James E. Johnson, Brian C. O'Meara, Matthew S. P. Aldrovandi, and Karen W. Hughes
- Subjects
Species complex ,Physiology ,Biogeography ,Idaho ,Molecular Sequence Data ,Biology ,Fungal Proteins ,DNA, Ribosomal Spacer ,Genetics ,DNA, Fungal ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,Phylogenetic tree ,British Columbia ,Campanella ,Cell Biology ,General Medicine ,Reproductive isolation ,biology.organism_classification ,Phylogeography ,Sympatric speciation ,Evolutionary biology ,North America ,RNA Polymerase II ,Agaricales ,Xeromphalina campanella - Abstract
European, North American and northeastern Asian collections of Xeromphalina section Xeromphalina were studied by sequencing the nuc rDNA ITS1-5.8SITS2 and 28S 5' regions and partial RNA polymerase II second largest subunit gene (RPB2). Previously designated Xeromphalina campanella I is designated X. campanella s. str. and a neotype for this species from the topotype region is established. This species is shown to be a discrete, cold-tolerant organism that is distributed across North America and Eurasia and does not exhibit significant geographical partitioning. A second closely related phylogenetic species previously designated X. campanella II, proposed as X. enigmatica, cannot be distinguished from X. campanella morphologically but is reproductively isolated and is sympatric with X. campanella across much of Eurasia and North America. Unlike X. campanella it shows geographical partitioning and some of the geographical populations likely have become reproductively isolated. Phylogenetic and geographical evidence suggests that X. enigmatica may have given rise to the eastern North American endemic, Xeromphalina kauffmanii, which also is reproductively isolated and is characterized by a hardwood substrate and a difference in basidiospore shape. Two putatively interbreeding haplotypes are evident for both eastern North American X. kauffmanii and eastern North American X. enigmatica and might be contributions from different glacial refugia. Cryptic taxa related to X. enigmatica are identified but not named due to small sample sizes including Asian taxa 1-5 and an apparent endemic from Idaho and British Columbia. Several species-delineation procedures were attempted and compared with this complex molecular dataset. Rosenberg's PAB statistic and PID (liberal) were the most liberal, assigning species status to haplotypes or interbreeding clades within species. PID (strict) and PRD (randomly distinct) were more stringent. Ability to intercross was the most stringent criterion for species delineation and did not correlate well with PAB, PID and PRD delineations.
- Published
- 2015
40. Major clades of Agaricales: a multilocus phylogenetic overview
- Author
-
Richard W. Kerrigan, Michelle T. Seidl, Dennis E. Desjardin, P. Brandon Matheny, Matthew DeNitis, Neale L. Bougher, Timothy J. Baroni, David S. Hibbett, Zhu-Liang Yang, Joseph F. Ammirati, D. Jean Lodge, Karen W. Hughes, Valérie Hofstetter, Zai-Wei Ge, Else C. Vellinga, Duur K. Aanen, Judd M. Curtis, Andrew D. Parker, Jason C. Slot, Rytas Vilgalys, Jean-Marc Moncalvo, M. Catherine Aime, Graciela María Daniele, Bradley R. Kropp, and Lorelei L. Norvell
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Molecular Sequence Data ,Zoology ,Sequence Homology ,DNA, Ribosomal ,010603 evolutionary biology ,01 natural sciences ,Agaricomycetes ,03 medical and health sciences ,Hygrophoraceae ,Phylogenetics ,Mycorrhizae ,RNA, Ribosomal, 18S ,Genetics ,Agaricales ,Cluster Analysis ,Clade ,DNA, Fungal ,Molecular Biology ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,biology ,Ecology ,Inocybaceae ,Sequence Analysis, DNA ,Cell Biology ,General Medicine ,Mitochondrial Proton-Translocating ATPases ,030108 mycology & parasitology ,biology.organism_classification ,Introns ,RNA, Ribosomal, 5.8S ,RNA, Ribosomal ,Strophariaceae ,Phylogenetic nomenclature - Abstract
An overview of the phylogeny of the Agaricales is presented based on a multilocus analysis of a six-gene region supermatrix. Bayesian analyses of 5611 nucleotide characters of rpb1, rpb1-intron 2, rpb2 and 18S, 25S, and 5.8S ribosomal RNA genes recovered six major clades, which are recognized informally and labeled the Agaricoid, Tricholomatoid, Marasmioid, Pluteoid, Hygrophoroid and Plicaturopsidoid clades. Each clade is discussed in terms of key morphological and ecological traits. At least 11 origins of the ectomycorrhizal habit appear to have evolved in the Agaricales, with possibly as many as nine origins in the Agaricoid plus Tricholomatoid clade alone. A family-based phylogenetic classification is sketched for the Agaricales, in which 30 families, four unplaced tribes and two informally named clades are recognized.
- Published
- 2006
- Full Text
- View/download PDF
41. Morphology, Growth Characteristics, and Genetic Variability of the Edible Medicinal Mushroom Flammulina velutipes (W. Curt.: Fr.) Singer Collections
- Author
-
Karen W. Hughes, Carmen Z. Sakeyan, Susanna M. Badalyan, and Elizabeth Helmbrecht
- Subjects
Pharmacology ,Medicinal mushroom ,Traditional medicine ,Drug Discovery ,Botany ,Morphology (biology) ,Genetic variability ,Biology ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Flammulina - Published
- 2006
- Full Text
- View/download PDF
42. Rhodocollybia in neotropical montane forests
- Author
-
Ronald H. Petersen, Roy E. Halling, Karen W. Hughes, and Juan L. Mata
- Subjects
Rhodocollybia ,Taxon ,Collybia ,biology ,Phylogenetic tree ,Ecology ,Gymnopus ,Agaricales ,Key (lock) ,Montane ecology ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Ecology, Evolution, Behavior and Systematics - Abstract
Traditional concepts of Collybia (Agaricales) have included a variety of morphologically disparate taxa. Reapplication of some characters used in circumscribing Collybia s.l. suggests realignment of well-known North American and European species into three genera, viz. Collybia s.s, Rhodocollybia, and Gymnopus. Rhodocollybia is recognized here at generic rank based on morphological characteristics and phylogenetic signaling. Seven new species epithets under Rhodocollybia, and a new combination under Gymnopus, are proposed. A key to species of Rhodocollybia found in neotropical montane forests is provided.
- Published
- 2004
- Full Text
- View/download PDF
43. Phylogenetic placement of Marasmiellus juniperinus
- Author
-
Ronald H. Petersen, Juan L. Mata, and Karen W. Hughes
- Subjects
Type species ,Collybia ,biology ,Phylogenetic tree ,Phylogenetics ,Marasmiellus ,Gymnopus ,Zoology ,Taxonomy (biology) ,biology.organism_classification ,Clade ,Ecology, Evolution, Behavior and Systematics - Abstract
Recent collections and the type specimen of Marasmiellus juniperinus, the type species of the genus, were examined. Phylogenetic placement, based on ribosomal large subunit (LSU) and internally transcribed spacer (ITS) sequences, is within the lentinuloid clade, nested among Gymnopus taxa. This placement dictates genus name usage and phylogenetic position of other putative species of Marasmiellus. The mating system is tetrapolar.
- Published
- 2004
- Full Text
- View/download PDF
44. The tropical Polyporus tricholoma (Polyporaceae) — Taxonomy, phylogeny, and the development of methods to detect cryptic species
- Author
-
Karen W. Hughes, Dirk Krüger, and Ronald H. Petersen
- Subjects
Species complex ,biology ,Mesoamerica ,Zoology ,Fungus ,biology.organism_classification ,Agricultural and Biological Sciences (miscellaneous) ,Polyporus ,Phylogenetics ,Botany ,Taxonomy (biology) ,Ribosomal DNA ,Ecology, Evolution, Behavior and Systematics ,Polyporaceae - Abstract
The stipitate pore-bearing fungus Polyporus tricholoma (Polyporus infrageneric group Polyporellus) is commonly reported from Mesoamerica and more rarely from the palaeotropics. Collections from Puerto Rico, Mexico, and Costa Rica did not differ morphologically, but their monokaryotic cultures revealed the existence of three interINcompatibility groups. These putative cryptic species exist sympatrically in Costa Rica. Sequencing, restriction enzyme digestion, and specific primers targeting the ITS region of nuclear ribosomal DNA (ITS 1-5.8S-ITS2) could only partly be used for detecting intercompatibility groups. Heterogeneity within the rDNA repeat was observed. Molecular evidence supports the existence of a close relative in Australia.
- Published
- 2004
- Full Text
- View/download PDF
45. Tissue Culture in Forestry and Agriculture
- Author
-
Randolph R. Henke, Karen W. Hughes, Milton J. Constantin, Alexander Hollaender, Claire M. Wilson, Randolph R. Henke, Karen W. Hughes, Milton J. Constantin, Alexander Hollaender, and Claire M. Wilson
- Subjects
- Plant tissue culture--Congresses, Plant micropropagation--Congresses, Agriculture--Congresses, Forests and forestry--Congresses
- Abstract
This symposium is the third in a series featuring the propaga tion of higher plants through tissue culture. The first of these symposia, entitled'A Bridge Between Research and Application,'was held at the University in 1978 and was published by the Technical Information Center, Department of Energy. The second symposium, on'Emerging Technologies and Strategies,'was held in 1980 and pub lished as a special issue of Environmental and Experimental Botany. One of the aims of these symposia was to examine the current state of-the-art in tissue culture technology and to relate this state of technology to practical, applied, and commercial interests. Thus, the third of this series on development and variation focused on embryogenesis in culture: how to recognize it, factors which affect embryogenesis, use of embryogenic systems, etc.; and variability from culture. A special session on woody species again emphasized somatic embryogenesis as a means of rapid propagation. This volume emphasizes tissue culture of forest trees. All of these areas, we feel, are breakthrough areas in which significant progress is expected in the next few years.
- Published
- 2013
46. Campanophyllum: A new genus for an old species name
- Author
-
Ronald H. Petersen, Karen W. Hughes, and Joaquín Cifuentes
- Subjects
Campanophyllum ,biology ,Species name ,Genus ,Agaric ,Lentinus ,Zoology ,Chondrostereum ,biology.organism_classification ,Clade ,Agricultural and Biological Sciences (miscellaneous) ,Gloeostereum ,Ecology, Evolution, Behavior and Systematics - Abstract
Campanophyllum is proposed as a new genus name to accommodate Lentinus proboscideus Fries, based on morphological and molecular data from collections made in Colombia, Costa Rica, Ecuador and Mexico. A neotype specimen is designated. The taxonomic circumscription of the new genus is compared to those of a wide array of agaric genera having cyphelloid, pseudostipitate members. Based on ribosomal large subunit DNA data, Campanophyllum appears to be placed in the “/gloeostereae” clade where it is nested with Cheimonophyllum, Chondrostereum and Gloeostereum.
- Published
- 2003
- Full Text
- View/download PDF
47. Biogeographical patterns inArtomyces pyxidatus
- Author
-
Ronald H. Petersen, Edgar B. Lickey, and Karen W. Hughes
- Subjects
0106 biological sciences ,Phylogenetic tree ,Physiology ,Ecology ,Biogeography ,Zoology ,Cell Biology ,General Medicine ,Biology ,Ribosomal RNA ,010603 evolutionary biology ,01 natural sciences ,Restriction enzyme ,Restriction site ,Genetics ,Restriction fragment length polymorphism ,Clade ,Molecular Biology ,Ribosomal DNA ,geographic locations ,Ecology, Evolution, Behavior and Systematics ,010606 plant biology & botany - Abstract
Artomyces pyxidatus (Auriscalpiaceae) is a lignicolous, coralloid basidiomycete found throughout temperate regions of the Northern Hemisphere. Previous studies established that populations from the eastern United States, Sweden, and China were conspecific based on mating compatibility and enzyme profiles. In this study, mating compatibility was extended to include collections from Russia, Costa Rica, Mexico, and Utah. The molecular diversity of A. pyxidatus was examined by DNA sequence and restriction site analyses of the nuclear ribosomal internally transcribed spacer region (ITS1-5.8S-ITS2). A phylogenetic analysis of twelve isolates based on ITS sequences revealed a broad geographical pattern in which Eurasian isolates comprise a sister clade to North American isolates. North American isolates appear to be further subdivided into northeastern and southwestern clades. A survey of 255 A. pyxidatus isolates using restriction enzymes revealed variable RFLP patterns that follow similar geographical patterns.
- Published
- 2002
- Full Text
- View/download PDF
48. Lignomyces, a new genus of pleurotoid Agaricomycetes
- Author
-
Ronald H. Petersen, Salavat N. Arslanov, Nadezhda V. Psurtseva, Ivan V. Zmitrovich, Karen W. Hughes, and Piotr Chachuła
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Phyllotopsis nidulans ,01 natural sciences ,Agaricomycetes ,03 medical and health sciences ,Species Specificity ,Genus ,Botany ,Genetics ,Fruiting Bodies, Fungal ,DNA, Fungal ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Phylogeny ,Pleurotus ,biology ,Basidiomycota ,Cell Biology ,General Medicine ,030108 mycology & parasitology ,Ribosomal RNA ,biology.organism_classification ,Phyllotopsis ,Lentinus ,DNA, Intergenic ,Resupinatus ,010606 plant biology & botany - Abstract
Collections of a pleurotoid fungus from dead aspen in eastern Russia were initially identified as Lentinus sp., then as Phyllotopsis nidulans. DNA sequencing of cultures derived from these specimens using the nuclear ribosomal 28S (nrLSU) and nuclear ribosomal ITS1-5.8S-ITS2 regions (nrITS) showed that they were neither Lentinus nor Phyllotopsis and were not related to other pleurotoid genera Hohen- buehelia and Pleurotus. Subsequent investigation showed that the Russian fungus was the same as Pleurotus vetlinianus described from Poland. A new genus, Lignomyces, is described and characterized and L. vetlinianus comb. nov. is proposed.
- Published
- 2014
49. The genus Lentinula in the Americas
- Author
-
Karen W. Hughes, Ronald H. Petersen, and Juan L. Mata
- Subjects
biology ,Physiology ,Lentinula boryana ,Cell Biology ,General Medicine ,biology.organism_classification ,Lentinula ,Extant taxon ,Genus ,Evolutionary biology ,Genetics ,Agaricales ,Type specimen ,Consensus tree ,Molecular Biology ,Nomenclature ,Ecology, Evolution, Behavior and Systematics - Abstract
Recent studies have reported only Lentinula boryana and L. guarapiensis from the American continent, the latter known only from its type specimen. We report at least three extant species. Two widel...
- Published
- 2001
- Full Text
- View/download PDF
50. Biogeographical patterns inPanellus stypticus
- Author
-
Jiankang Jin, Karen W. Hughes, and Ronald H. Petersen
- Subjects
Physiology ,Genetics ,Cell Biology ,General Medicine ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics - Published
- 2001
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.