29 results on '"Karki AB"'
Search Results
2. Primary malignant mucosal melanoma of the larynx: A case report and literature review
- Author
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Khadka, S Shrestha, primary, Lee, MC, primary, and Karki, AB, primary
- Published
- 2015
- Full Text
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3. Aerotolerancy of Campylobacter spp.: A Comprehensive Review.
- Author
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Delaporte E, Karki AB, and Fakhr MK
- Abstract
Campylobacter spp. constitute a group of microaerophilic bacteria that includes strains that are aerotolerant and capable of surviving in aerobic conditions. Recent studies have shown that aerotolerant strains are highly prevalent in meats, animals, and clinical settings. Changes in growth media and other environmental conditions can affect the aerotolerance of Campylobacter strains and must be considered when studying their aerotolerance in vitro. Polymicrobial interactions and biofilms also play a significant role in the ability of Campylobacter to survive oxygen exposure. Continuous subculturing may foster aerotolerance, and studies have demonstrated a positive correlation between aerotolerance and virulence and between aerotolerance and the ability to survive stressful environmental conditions. Various mechanisms and genetic origins for aerotolerance have been proposed; however, most of the potential genes involved in aerotolerance require further investigation, and many candidate genes remain unidentified. Research is also needed to investigate if there are any clinical implications for Campylobacter aerotolerance. Understanding the aerotolerance of Campylobacter remains an important target for further research, and it will be an important step towards identifying potential targets for intervention against this clinically important food-borne pathogen.
- Published
- 2024
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4. Role of Prophylactics Antibiotics in Clean Head and Neck Surgery in a Tertiary Care Center of Nepal: A Prospective Comparative Study.
- Author
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Paudel D, Karki AB, and Shrestha A
- Subjects
- Humans, Nepal, Prospective Studies, Male, Female, Middle Aged, Adult, Aged, Young Adult, Adolescent, Surgical Wound Infection prevention & control, Tertiary Care Centers, Antibiotic Prophylaxis methods, Anti-Bacterial Agents therapeutic use, Anti-Bacterial Agents administration & dosage
- Abstract
Background: Surgical site infections are well recognized complications of any surgical procedures. In head and neck surgeries, prophylactic antibiotics are commonly used to prevent Surgical site infections, in contaminated and clean contaminated procedures. Guidelines advised against routine antibiotics use in clean surgeries, but in our setting, non-compliance is frequent, resulting excessive antibiotics use. Objective of the study was to compare the Surgical site infections rate between prophylactics antibiotics group and no antibiotics group in clean head and neck surgery., Methods: It was a prospective comparative study conducted at a tertiary care centre of eastern Nepal. Patients were assigned to two groups, one receiving prophylactic antibiotics and another receiving no antibiotics., Results: Out of 131 patients, 66 received prophylactic antibiotics and 65 did not. Thyroidectomy was the most common surgery. The surgical site infection rate was 6.06% in antibiotic group and 7.69% in no antibiotic group, the difference was not significant (p=0.744). The risk reduction of surgical site infection with use of antibiotics was 0.0163 and number need to treat was calculated to be 61.35 About 3% of the patients who were administered antibiotics experienced adverse drug reactions. Factors, such as gender, amount of blood loss, smoking, placement of drains had no significant impact on Surgical site infections rate., Conclusions: Prophylactics antibiotics does not offer substantial advantages in preventing surgical site infections and are not advised for such procedures. Moreover, their use increases the financial burden and risk of adverse drug reactions to the patients.
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- 2024
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5. Complete genome sequence of plasmid-bearing aerotolerant Campylobacter jejuni strain S2-20 isolated from retail chicken meat.
- Author
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Karki AB, Delaborte E, and Fakhr MK
- Abstract
Complete genome sequencing of aerotolerant Campylobacter jejuni strain S2-20 revealed the presence of a chromosome of 1,695,449 bp and a plasmid of 49,741 bp that contains predicted antimicrobial resistance and type IV secretion system genes. The chromosome harbored several putative oxidative stress genes with potential roles in aerotolerance., Competing Interests: The authors declare no conflict of interest.
- Published
- 2024
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6. Transcriptome Analysis of Campylobacter jejuni and Campylobacter coli during Cold Stress.
- Author
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Karki AB, Khatri B, and Fakhr MK
- Abstract
Campylobacter spp. are known to cause campylobacteriosis, a bacterial disease that remains a public health threat. Campylobacter spp. are prevalent in retail meat and liver products, and the prolonged survival of Campylobacter in the low temperatures needed for storage is a challenge for food safety. In this study, RNA-seq was used for the analysis of the C. coli HC2-48 (Cc48) and C. jejuni OD2-67 (Cj67) transcriptomes at 4 °C in a nutrient-rich medium (chicken juice, CJ) and Mueller-Hinton broth (MHB) for 0 h, 0.5 h, 24 h and 48 h. Differentially expressed genes (DEGs) involved in flagellar assembly were highly impacted by low temperatures (4 °C) in C. coli HC2-48, whereas genes related to the ribosome and ribonucleoprotein complex were modulated for C. jejuni OD2-67 at 4 °C. Most of the DEGs in cells grown at 4 °C in the two medium formulations were not significantly expressed at different incubation times. Although more DEGs were observed in CJ as compared to MHB in both Campylobacter strains, the absence of common genes expressed at all incubation times indicates that the food matrix environment is not the sole determinant of differential expression in Campylobacter spp. at low temperatures.
- Published
- 2023
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7. Evidence for unconventional superconductivity and nontrivial topology in PdTe.
- Author
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Chapai R, Reddy PVS, Xing L, Graf DE, Karki AB, Chang TR, and Jin R
- Abstract
PdTe is a superconductor with T
c ~ 4.25 K. Recently, evidence for bulk-nodal and surface-nodeless gap features has been reported in PdTe. Here, we investigate the physical properties of PdTe in both the normal and superconducting states via specific heat and magnetic torque measurements and first-principles calculations. Below Tc , the electronic specific heat initially decreases in T3 behavior (1.5 K < T < Tc ) then exponentially decays. Using the two-band model, the superconducting specific heat can be well described with two energy gaps: one is 0.372 meV and another 1.93 meV. The calculated bulk band structure consists of two electron bands (α and β) and two hole bands (γ and η) at the Fermi level. Experimental detection of the de Haas-van Alphen (dHvA) oscillations allows us to identify four frequencies (Fα = 65 T, Fβ = 658 T, Fγ = 1154 T, and Fη = 1867 T for H // a), consistent with theoretical predictions. Nontrivial α and β bands are further identified via both calculations and the angle dependence of the dHvA oscillations. Our results suggest that PdTe is a candidate for unconventional superconductivity., (© 2023. The Author(s).)- Published
- 2023
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8. Coupling of acceptor-substituted diazo compounds and tertiary thioamides: synthesis of enamino carbonyl compounds and their pharmacological evaluation.
- Author
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Secka J, Pal A, Acquah FA, Mooers BHM, Karki AB, Mahjoub D, Fakhr MK, Wallace DR, Okada T, Toyooka N, Kuta A, Koduri N, Herndon D, Roberts KP, Wang Z, Hileman B, Rajagopal N, and Hussaini SR
- Abstract
This paper describes the synthesis of enamino carbonyl compounds by the copper(i)-catalyzed coupling of acceptor-substituted diazo compounds and tertiary thioamides. We plan to use this method to synthesize indolizidine (-)-237D analogs to find α6-selective antismoking agents. Therefore, we also performed in silico α6-nAchRs binding studies of selected products. Compounds with low root-mean-square deviation values showed more favorable binding free energies. We also report preliminary pharmacokinetic data on indolizidine (-)-237D and found it to have weak activity at CYP3A4. In addition, as enamino carbonyl compounds are also known for antimicrobial properties, we screened previously reported and new enamino carbonyl compounds for antibacterial, antimicrobial, and antifungal properties. Eleven compounds showed significant antimicrobial activities., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2022
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9. Staphylococcus aureus enhances biofilm formation, aerotolerance, and survival of Campylobacter strains isolated from retail meats.
- Author
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Karki AB, Ballard K, Harper C, Sheaff RJ, and Fakhr MK
- Subjects
- Campylobacter coli genetics, Campylobacter coli growth & development, Campylobacter coli pathogenicity, Campylobacter jejuni growth & development, Campylobacter jejuni pathogenicity, Coinfection genetics, Coinfection microbiology, Food Microbiology, Humans, Meat Products microbiology, Staphylococcal Infections microbiology, Staphylococcus aureus growth & development, Staphylococcus aureus pathogenicity, Biofilms growth & development, Campylobacter jejuni genetics, Meat microbiology, Staphylococcus aureus genetics
- Abstract
In retail meat products, Campylobacter jejuni, C. coli, and Staphylococcus aureus have been reported in high prevalence. The polymicrobial interaction between Campylobacter and other bacteria could enhance Campylobacter survival during the adverse conditions encountered during retail meat processing and storage. This study was designed to investigate the potential role of S. aureus from retail meats in enhancing the survival of Campylobacter exposed to low temperature, aerobic conditions, and biofilm formation. Results indicated that viable S. aureus cells and filter-sterilized cell-free media obtained from S. aureus prolonged the survival of Campylobacter at low temperature and during aerobic conditions. Biofilm formation of Campylobacter strains was significantly enhanced in the presence of viable S. aureus cells, but the results were inconclusive when extracts from cell-free media were used. In conclusion, the presence of S. aureus cells enhances survivability of Campylobacter strains in adverse conditions such as low temperature and aerobic conditions. Further investigations are warranted to understand the interaction between Campylobacter and S. aureus, and effective intervention strategies are needed to reduce the incidence of both foodborne pathogens in retail meat products.
- Published
- 2021
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10. Comparative Genomics of Plasmid-Bearing Staphylococcus aureus Strains Isolated From Various Retail Meats.
- Author
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Karki AB, Neyaz L, and Fakhr MK
- Abstract
Food poisoning due to the consumption of Staphylococcus aureus contaminated food is a major health problem worldwide. In this study, we sequenced the genomes of ten plasmid-bearing S. aureus strains isolated from retail beef, chicken, turkey, and pork. The chromosomes of the strains varied in size from 2,654,842 to 2,807,514 bp, and a total of 25 plasmids were identified ranging from 1.4 to 118 kb. Comparative genomic analysis revealed similarities between strains isolated from the same retail meat source, indicating an origin-specific genomic composition. Genes known to modulate attachment, invasion, and toxin production were identified in the 10 genomes. Strains from retail chicken resembled human clinical isolates with respect to virulence factors and genomic islands, and retail turkey and pork isolates shared similarity with S. aureus from livestock. Most chromosomes contained antimicrobial resistance, heavy metal resistance, and stress response genes, and several plasmids contained genes involved in antimicrobial resistance and virulence. In conclusion, the genomes of S. aureus strains isolated from retail meats showed an origin-specific composition and contained virulence and antimicrobial resistance genes similar to those present in human clinical isolates., (Copyright © 2020 Karki, Neyaz and Fakhr.)
- Published
- 2020
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11. Molecular characterization of megaplasmids encoding the type VI secretion system in Campylobacter jejuni isolated from chicken livers and gizzards.
- Author
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Marasini D, Karki AB, Bryant JM, Sheaff RJ, and Fakhr MK
- Subjects
- Animals, Cell Death, Cell Survival, Chromosomes, Bacterial genetics, DNA, Bacterial genetics, Erythrocytes metabolism, Genome, Bacterial, HEK293 Cells, Hemolysis, Horses, Humans, Tetracycline Resistance, Campylobacter jejuni genetics, Campylobacter jejuni isolation & purification, Chickens microbiology, Gizzard, Avian microbiology, Liver microbiology, Plasmids genetics, Type VI Secretion Systems genetics
- Abstract
Megaplasmids in Campylobacter spp. likely play important roles in antibiotic resistance, virulence, and horizontal gene transfer. In this study, megaplasmids pCJDM202 (119 kb) and pCJDM67L (116 kb) from C. jejuni strains WP2-202 and OD2-67, respectively, were sequenced and characterized. These megaplasmids contained genes for tetracycline resistance [tet(O)], the Type IV secretion system, conjugative transfer and the Type VI secretion system (T6SS). The T6SS genes in Campylobacter plasmids encoded genes and proteins that were similar to those identified in Campylobacter chromosomal DNA. When the megaplasmid pCJDM202 from C. jejuni WP2-202 was transferred via conjugation to C. jejuni NCTC11168 Nal
+ , transconconjugants acquired tetracycline resistance and enhanced cytotoxicity towards red blood cells. A T6SS mutant of strain WP2-202 was generated and designated Δhcp3; the mutant was significantly impaired in its ability to lyse red blood cells and survive in defibrinated blood. The cytotoxicity of Campylobacter strains towards the human embryonic kidney cell line HEK 293 was not impacted by the T6SS. In summary, the T6SS encoded by Campylobacter megaplasmids mediates lysis of RBCs and likely contributes to survival on retail meats where blood cells are abundant.- Published
- 2020
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12. Draft Genome Sequence of Megaplasmid-Bearing Staphylococcus sciuri Strain B9-58B, Isolated from Retail Pork.
- Author
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Neyaz L, Karki AB, and Fakhr MK
- Abstract
Here, we report the genome sequence of the megaplasmid-bearing Staphylococcus sciuri strain B9-58B, isolated from retail pork. This strain contains a 2,761,440-bp chromosome and a 162,858-bp megaplasmid. The genome contains putative genes involved in virulence, the stress response, and antimicrobial agent and heavy metal resistance., (Copyright © 2020 Neyaz et al.)
- Published
- 2020
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13. The Whole-Genome Sequence of Plasmid-Bearing Staphylococcus argenteus Strain B3-25B from Retail Beef Liver Encodes the Type VII Secretion System and Several Virulence Factors.
- Author
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Neyaz L, Karki AB, and Fakhr MK
- Abstract
The whole-genome sequence of Staphylococcus argenteus strain B3-25B, isolated from retail beef liver, comprises a circular chromosome (2,676,222 bp) and a single plasmid (21,570 bp). The chromosome harbors genes encoding the type VII secretion system and several virulence factors., (Copyright © 2019 Neyaz et al.)
- Published
- 2019
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14. Retail liver juices enhance the survivability of Campylobacter jejuni and Campylobacter coli at low temperatures.
- Author
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Karki AB, Wells H, and Fakhr MK
- Subjects
- Animals, Beverages microbiology, Campylobacter Infections microbiology, Campylobacter coli isolation & purification, Campylobacter jejuni isolation & purification, Chickens, Cold Temperature, Food Contamination analysis, Food Microbiology, Foodborne Diseases microbiology, Humans, Liver microbiology, Microbial Viability, Red Meat, Campylobacter Infections etiology, Campylobacter coli cytology, Campylobacter jejuni cytology, Foodborne Diseases etiology, Meat microbiology
- Abstract
The high prevalence of Campylobacter spp. in retail liver products was previously reported and has been linked to several outbreaks of campylobacteriosis. The main objective of this study was to investigate the influence of retail liver juices on the survivability of several strains of C. jejuni and C. coli, which were previously isolated from various retail meats at 4 °C. All tested Campylobacter strains showed higher survival in beef liver juice (BLJ) and chicken liver juice (CLJ) as compared to beef and chicken juices (BJ and CJ) or Mueller Hinton broth (MHB) at 4 °C. Overall, C. jejuni strains showed greater survival in retail liver and meat juices as compared to C. coli. CLJ enhanced biofilm formation of most C. coli strains and supported growth in favorable conditions. When diluted, retail liver and meat juices enhanced survival of Campylobacter strains at low temperatures and increased aerotolerance. In conclusion, beef and chicken liver juices enhanced the survival of C. jejuni and C. coli strains at low temperatures, which helps explain the high prevalence of Campylobacter spp. in retail liver products.
- Published
- 2019
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15. Campylobacter coli From Retail Liver and Meat Products Is More Aerotolerant Than Campylobacter jejuni .
- Author
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Karki AB, Marasini D, Oakey CK, Mar K, and Fakhr MK
- Abstract
Aerotolerance in the microaerophilic species Campylobacter was previously reported and could increase bacterial survival and transmission in foods during stressful processing and storage conditions. In this study, 167 Campylobacter isolates (76 C. jejuni and 91 C. coli ) were screened for aerotolerance; these strains were previously isolated from retail chicken meat, chicken livers, chicken gizzards, turkey, pork, and beef liver samples. Bacterial cultures were incubated aerobically in Mueller Hinton broth with agitation and viable cell counts were taken at 0, 6, 12, and 24 h. Approximately 47% of the screened Campylobacter isolates were aerotolerant (viable after a 12-h aerobic incubation period), whereas 24% were hyper-aerotolerant (viable after a 24-h aerobic incubation). A greater prevalence of aerotolerant strains (80%) was found among C. coli isolates as compared to C. jejuni isolates (6%). Differences in the oxidative stress response related genes were detected among C. jejuni and C. coli isolates when comparative genomics was used to analyze 17 Whole Genome Sequenced (WGS) strains from our laboratory. Genes encoding putative transcriptional regulator proteins and a catalase-like heme binding protein were found in C. coli genomes, but were absent in the genomes of C. jejuni . PCR screening showed the presence of a catalase-like protein gene in 75% (68/91) of C. coli strains, which was absent in all tested C. jejuni strains. While about 79% (30/38) of the hyper-aerotolerant C. coli strains harbored the catalase-like protein gene, the gene was also present in a number of the aerosensitive strains. The Catalase like protein gene was found to be expressed in both aerobic and microaerobic conditions with a 2-fold higher gene expression detected in aerobic conditions for an aerosensitive strain. However, the exact function of the gene remains unclear and awaits further investigation. In conclusion, aerotolerant Campylobacter strains (especially C. coli ) are prevalent in various retail meats. Further studies are needed to investigate whether the genes encoding catalase-like heme binding protein and putative transcriptional regulators in C. coli strains are involved in stress response.
- Published
- 2018
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16. Phylogenetic Relatedness Among Plasmids Harbored by Campylobacter jejuni and Campylobacter coli Isolated From Retail Meats.
- Author
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Marasini D, Karki AB, Buchheim MA, and Fakhr MK
- Abstract
Campylobacter jejuni and Campylobacter coli are two of the major causes of foodborne illness. In this study, 29 plasmids isolated from 20 retail meat isolates of Campylobacter jejuni and Campylobacter coli were fully-sequenced individually or as a part of a whole genome sequencing approach. The fully-sequenced plasmids ranged in size from 3 to 119 kb. Molecular characterization of the sequenced plasmids was based on pangenomic analysis and types of genes present on these plasmids and similar ones from GenBank. The plasmids were categorized into four different groups. These groups include type-1 that consisted mainly of pTet plasmids with the tetO gene, type-2 plasmids commonly found in C. coli strains, type-3 which has pVir plasmids, and type-4 that consisted mainly of smaller plasmids. The type-2 plasmids were unique, common among C. coli strains, and carried several conjugative transfer genes. The type-2 plasmids were most similar to a plasmid from Helicobacter pullorum . Maximum parsimony analysis and NeighborNet analysis were used to assess the phylogenetic relatedness among the 29 plasmid sequences presented in this study in addition to the other 104 plasmid sequences of Campylobacter species available in GenBank to date. Results from MP analysis revealed multiple lineages among Campylobacter plasmids which was supported by NeighborNet analysis. Clustering of plasmids did not conform to species-specific clades which suggested an intra-species dissemination of plasmids among Campylobacter species. To our knowledge, this is the first extensive phylogenetic analysis of Campylobacter plasmids sequenced to date.
- Published
- 2018
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17. Interrogating the superconductor Ca 10 (Pt 4 As 8 )(Fe 2-x Pt x As 2 ) 5 Layer-by-layer.
- Author
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Kim J, Nam H, Li G, Karki AB, Wang Z, Zhu Y, Shih CK, Zhang J, Jin R, and Plummer EW
- Abstract
Ever since the discovery of high-T
c superconductivity in layered cuprates, the roles that individual layers play have been debated, due to difficulty in layer-by-layer characterization. While there is similar challenge in many Fe-based layered superconductors, the newly-discovered Ca10 (Pt4 As8 )(Fe2 As2 )5 provides opportunities to explore superconductivity layer by layer, because it contains both superconducting building blocks (Fe2 As2 layers) and intermediate Pt4 As8 layers. Cleaving a single crystal under ultra-high vacuum results in multiple terminations: an ordered Pt4 As8 layer, two reconstructed Ca layers on the top of a Pt4 As8 layer, and disordered Ca layer on the top of Fe2 As2 layer. The electronic properties of individual layers are studied using scanning tunneling microscopy/spectroscopy (STM/S), which reveals different spectra for each surface. Remarkably superconducting coherence peaks are seen only on the ordered Ca/Pt4 As8 layer. Our results indicate that an ordered structure with proper charge balance is required in order to preserve superconductivity.- Published
- 2016
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18. Role of antiferromagnetic ordering in the (1×2) surface reconstruction of Ca(Fe(1-x)Co(x))2As2.
- Author
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Li G, Liang L, Li Q, Pan M, Nascimento VB, He X, Karki AB, Meunier V, Jin R, Zhang J, and Plummer EW
- Abstract
Low energy electron diffraction, scanning tunneling microscopy and spectroscopy, and first-principles spin-dependent density functional theory are utilized to investigate the geometric, electronic, and magnetic structures of the stripe-ordered (1×2) surface of Ca(Fe1-xCox)2As2 (x=0, 0.075). The surface is terminated with a 50% Ca layer. Compared to the bulk, the surface Ca layer has a large inward relaxation (∼0.5 Å), and the underneath As-Fe2-As layer displays a significant buckling. First-principles calculations show that the (1×2) phase is stabilized by the bulk antiferromagnetic spin ordering through the spin-charge-lattice coupling. Strikingly, a superconducting gap (∼7 meV at 7.4 K) is observed to spatially coexist with the (1×2) phase (x=0.075 compound). This implies the coexistence of both superconductivity and AFM ordering at the surface.
- Published
- 2014
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19. Interplay between superconductivity and magnetism in Fe(1-x)Pd(x)Te.
- Author
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Karki AB, Garlea VO, Custelcean R, Stadler S, Plummer EW, and Jin R
- Subjects
- Temperature, X-Ray Diffraction, Electric Conductivity, Magnetics, Magnets chemistry, Palladium chemistry, Tellurium chemistry
- Abstract
The attractive/repulsive relationship between superconductivity and magnetic ordering has fascinated the condensed matter physics community for a century. In the early days, magnetic impurities doped into a superconductor were found to quickly suppress superconductivity. Later, a variety of systems, such as cuprates, heavy fermions, and Fe pnictides, showed superconductivity in a narrow region near the border to antiferromagnetism (AFM) as a function of pressure or doping. However, the coexistence of superconductivity and ferromagnetic (FM) or AFM ordering is found in a few compounds [RRh4B4 (R = Nd, Sm, Tm, Er), R'Mo6X8 (R' = Tb, Dy, Er, Ho, and X = S, Se), UMGe (M = Ge, Rh, Co), CeCoIn5, EuFe2(As(1-x)P(x))2, etc.], providing evidence for their compatibility. Here, we present a third situation, where superconductivity coexists with FM and near the border of AFM in Fe(1-x)Pd(x)Te. The doping of Pd for Fe gradually suppresses the first-order AFM ordering at temperature T(N/S), and turns into short-range AFM correlation with a characteristic peak in magnetic susceptibility at T'(N). Superconductivity sets in when T'(N) reaches zero. However, there is a gigantic ferromagnetic dome imposed in the superconducting-AFM (short-range) cross-over regime. Such a system is ideal for studying the interplay between superconductivity and two types of magnetic (FM and AFM) interactions.
- Published
- 2013
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20. Intestinal protozoan parasitic infection among school children.
- Author
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Mukhiya RK, Rai SK, Karki AB, and Prajapati A
- Subjects
- Child, Cross-Sectional Studies, Feces parasitology, Female, Humans, Intestinal Diseases, Parasitic diagnosis, Male, Nepal epidemiology, Protozoan Infections diagnosis, Sex Distribution, Intestinal Diseases, Parasitic epidemiology, Protozoan Infections epidemiology
- Abstract
Background: Intestinal protozoan parasitosis is highly prevalent among general population, majority of them are children. The objective of the study is to find out the prevalence of intestinal protozoan infection in school children of Sindhuli., Methods: Stool samples were collected from school children of Sindhuli in June 2011 and investigated in National Institute of Tropical Medicine and Public Health Research, Laboratory by using formal-ether concentration method. Statistical significance was analyzed by using Chi-Square test., Results: A total of 342 stool samples were collected and 68 (19.8%) protozoan parasites were identified. The prevalence rate of protozoa in boys and girls were 16.9% and 22.0% respectively. Altogether 5 species of protozoan parasites were detected. Of them Entamoeba coli was most common followed by Giardia lamblia, Entamoeba histolytica, Blastocystis hominis and Endolimax nana. Positive rate was highest in Dalit (20.3%), and least in Indo-Aryan (19.6%)., Conclusions: There is a low prevalence of intestinal protozoan parasitosis among children even though this study emphasizes the need for improved environmental hygiene i.e. clean water supplies and enhanced sanitation.
- Published
- 2012
21. Study on carrier rate of Streptococcus pyogenes among the school children and antimicrobial susceptibility pattern of isolates.
- Author
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Prajapati A, Rai SK, Mukhiya RK, and Karki AB
- Subjects
- Adolescent, Child, Drug Resistance, Bacterial, Female, Humans, Male, Nepal epidemiology, Streptococcus pyogenes drug effects, Anti-Bacterial Agents therapeutic use, Carrier State drug therapy, Carrier State epidemiology, Streptococcal Infections drug therapy, Streptococcal Infections epidemiology, Streptococcus pyogenes isolation & purification
- Abstract
This study was done to investigate the rate of Streptococcus pyogenes or Group A streptococcus (GAS) and antimicrobial susceptibility pattern of isolates in asymptomatic school children in Kathmandu and Sindhuli districts. Pharyngeal swabs were collected and subjected to crystal violet blood agar (CVBA). A total of 468 asymptomatic school aged children were included and 51 (10.8%) were found to be GAS carrier. Among the isolates 23 (12.0%) were from boys where 28 (10.1%) were from girls. The GAS colonization rate was statistically insignificant (P > 0.05) with sex and age sub-group, although the rate was slightly higher among the boys and age sub group 10-12 years. GAS was significantly higher in large family size (p < 0.05). Out of 51 isolates, 100.0% isolates were sensitive to antibiotic penicillin where as 7.8% and 5.8% isolates were resistant to antibiotic ampicillin and erythromycin respectively.
- Published
- 2012
22. PdTe: a strongly coupled superconductor.
- Author
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Karki AB, Browne DA, Stadler S, Li J, and Jin R
- Abstract
We report the electrical transport, magnetic, and thermodynamic properties of polycrystalline PdTe which exhibits superconductivity below 4.5 K. Using the measured values for the lower (H(c1)) and upper (H(c2)) critical fields, and the specific heat C(p), we estimate the thermodynamic critical field H(c)(0), coherence length ξ(0), penetration depth λ(0), and the Ginzburg-Landau parameter κ. Compared with band structure calculations, the density of states at the Fermi level is enhanced due to electron-phonon coupling with λ(ep) = 1.4. Furthermore, the large values of ΔC(p)/γ(n)T(c) and 2Δ(0)/k(B)T(c) suggest that PdTe is a strongly coupled superconductor.
- Published
- 2012
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23. Synthesis, structure, magnetic and transport properties of LnFeSb3 (Ln = Pr, Nd, Sm, Gd, and Tb)--tuning of anisotropic long-range magnetic order as a function of Ln.
- Author
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Phelan WA, Nguyen GV, Karki AB, Young DP, and Chan JY
- Abstract
Single crystals of LnFeSb(3) (Ln = Pr, Nd, Sm, Gd, and Tb) have been grown from excess Sb flux. The crystal structure consists of (infinity)(2)[FeSb(2)] octahedra separated by layers of Ln atoms and nearly square planar nets of (infinity)(2)[Sb(2)]. These compounds are metallic and display anisotropic magnetic properties. Long-range antiferromagnetic order is observed in the Sm, Gd, and Tb samples when the magnetic field is applied along the crystallographic a-axis. Evidence of magnetic ordering in all the samples is observed for the field applied parallel to the layers. The magnetic properties are well-described by considering only the magnetic interactions between the Ln 4f moments, with no contribution from the Fe sublattice. Herein, we report the crystal growth, structure, magnetization, transport, and chemical stabilities of the title compounds.
- Published
- 2010
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24. Carbon-stabilized iron nanoparticles for environmental remediation.
- Author
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Zhang D, Wei S, Kaila C, Su X, Wu J, Karki AB, Young DP, and Guo Z
- Abstract
Ferromagnetic carbon-coated Fe nanoparticles (core size of 15 nm, saturated magnetization of Ms=218 emu g(-1) and coercivity of Hc=62 Oe), fabricated at a mild temperature, demonstrate a strong ability to effectively remove more than 95 wt% of Cr(VI) in waste water via carbon shell physical adsorption, which is much higher than the commercially available Fe NPs.
- Published
- 2010
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25. Crystal growth, structure, and physical properties of Ln(Cu,Al)12 (Ln = Y, Ce, Pr, Sm, and Yb) and Ln(Cu, Ga)12 (Ln = Y, Gd-Er, and Yb).
- Author
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Drake BL, Capan C, Cho JY, Nambu Y, Kuga K, Xiong YM, Karki AB, Nakatsuji S, Adams PW, Young DP, and Chan JY
- Abstract
Single crystals of Ln(Cu,Al)12 and Ln(Cu,Ga)12 compounds (Ln = Y, Ce-Nd, Sm, Gd-Ho, and Yb for Al and Ln = Y, Gd-Er, Yb for Ga) have been grown by flux-growth methods and characterized by means of single-crystal x-ray diffraction, complemented with microprobe analysis, magnetic susceptibility, resistivity and heat capacity measurements. Ln(Cu,Ga)12 and Ln(Cu,Al)12 of the ThMn12 structure type crystallize in the tetragonal I4/mmm space group with lattice parameters a approximately 8.59 Å and c approximately 5.15 Å and a approximately 8.75 Å and c approximately 5.13 Å for Ga and Al containing compounds, respectively. For aluminium containing compounds, magnetic susceptibility data show Curie-Weiss paramagnetism in the Ce and Pr analogues down to 50 K with no magnetic ordering down to 3 K, whereas the Yb analogue shows a temperature-independent Pauli paramagnetism. Sm(Cu,Al)12 orders antiferromagnetically at T(N)approximately 5 K and interestingly exhibits Curie-Weiss behaviour down to 10 K with no Van Vleck contribution to the susceptibility. Specific heat data show that Ce(Cu,Al)12 is a heavy fermion antiferromagnet with T(N) approximately 2 K and with an electronic specific heat coefficient γ0 as large as 390 mJ K2 mol(-1). In addition, this is the first report of Pr(Cu,Al)12 and Sm(Cu,Al)12 showing an enhanced mass (approximately 80 and 120 mJ K(2) mol(-1)). For Ga containing analogues, magnetic susceptibility data also show the expected Curie-Weiss behaviour from Gd to Er, with the Yb analogue being once again a Pauli paramagnet. The antiferromagnetic transition temperatures range over 12.5, 13.5, 6.7, and 3.4 K for Gd, Tb, Dy, and Er. Metallic behaviour is observed down to 3 K for all Ga and Al analogues. A large positive magnetoresistance up to 150% at 9 T is also observed for Dy(Cu,Ga)12. The structure, magnetic, and transport properties of these compounds will be discussed.
- Published
- 2010
- Full Text
- View/download PDF
26. Crystal growth, transport, and the structural and magnetic properties of Ln(4)FeGa(12) with Ln = Y, Tb, Dy, Ho, and Er.
- Author
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Drake BL, Grandjean F, Kangas MJ, Okudzeto EK, Karki AB, Sougrati MT, Young DP, Long GJ, and Chan JY
- Abstract
Ln(4)FeGa(12), where Ln is Y, Tb, Dy, Ho, and Er, prepared by flux growth, crystallize with the cubic Y(4)PdGa(12) structure with the Im3m space group and with a = 8.5650(4), 8.5610(4), 8.5350(3), 8.5080(3), and 8.4760(3) A, respectively. The crystal structure consists of an iron-gallium octahedra and face-sharing rare-earth cuboctahedra of the Au(3)Cu type. Er(4)Fe(0.67)Ga(12) is iron-deficient, leading to a distortion of the octahedral and cuboctahedral environments due to the splitting of the Ga2 site into Ga2 and Ga3 sites. Further, interstitial octahedral sites that are unoccupied in Ln(4)FeGa(12) (Ln = Y, Tb, Dy, and Ho) are partially occupied by Fe2. Y(4)FeGa(12) exhibits weak itinerant ferromagnetism below 36 K. In contrast, Tb(4)FeGa(12), Dy(4)FeGa(12), Ho(4)FeGa(12), and Er(4)Fe(0.67)Ga(12) order antiferromagnetically with maxima in the molar magnetic susceptibilities at 26, 18.5, 9, and 6 K. All of the compounds exhibit metallic electric resistivity, and their iron-57 Mossbauer spectra, obtained between 4.2 and 295 K, exhibit a single-line absorption with a 4.2 K isomer shift of ca. 0.50 mm/s, a shift that is characteristic of iron in an iron-gallium intermetallic compound. A small but significant broadening in the spectral absorption line width is observed for Y(4)FeGa(12) below 40 K and results from the small hyperfine field arising from its spin-polarized itinerant electrons.
- Published
- 2010
- Full Text
- View/download PDF
27. Investigation of the effect of Ni substitution on the physical properties of Ce(Cu(1-x)Ni(x))(y)Sb(2).
- Author
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Gautreaux DP, Parent M, Karki AB, Young DP, and Chan JY
- Abstract
Single crystals of Ce(Cu(1-x)Ni(x))(y)Sb(2) (x = 0, 0.25, 0.37, 0.46; y∼0.7) were synthesized using a flux growth method and crystallize in the tetragonal P4/nmm space group with lattice parameters of a∼4.4 Å and c∼9.8 Å. The effects of Ni substitution on the magnetic and electrical transport properties are investigated. Three of the analogues (with x = 0, 0.37, and 0.46) show antiferromagnetic behavior while the x = 0.25 sample is paramagnetic down to 2 K. Field-dependent magnetization data as well as resistivities are presented. Positive magnetoresistance behaviors above 70% are observed for the analogues with x = 0, 0.37, and 0.46 at 3 K and up to 9 T. The La analogue La(Cu(0.2)Ni(0.8))(y)Sb(2), has been synthesized and large, positive magnetoresistance of ∼300% is observed at 3 K and 9 T.
- Published
- 2009
- Full Text
- View/download PDF
28. NaV2O4: a quasi-1D metallic antiferromagnet with half-metallic chains.
- Author
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Yamaura K, Arai M, Sato A, Karki AB, Young DP, Movshovich R, Okamoto S, Mandrus D, and Takayama-Muromachi E
- Abstract
NaV2O4 crystals were grown under high pressure using a NaCl flux, and the crystals were characterized with x-ray diffraction, electrical resistivity, heat capacity, and magnetization. The structure of NaV2O4 consists of double chains of edge-sharing VO6 octahedra. The resistivity is highly anisotropic, with the resistivity perpendicular to the chains more than 20 times greater than that parallel to the chains. Magnetically, the intrachain interactions are ferromagnetic and the interchain interactions are antiferromagnetic; 3D antiferromagnetic order is established at 140 K. First-principles electronic structure calculations indicate that the chains are half-metallic. Interestingly, the case of NaV2O4 seems to be a quasi-1D analogue of what was found for half-metallic materials.
- Published
- 2007
- Full Text
- View/download PDF
29. [A study of the action of sodium chlorate on strains of nitrate reducing soil bacteria (author's transl)].
- Author
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Karki AB and Kaiser P
- Subjects
- Bacteria genetics, Bacteria metabolism, Mutation, Nitrate Reductases genetics, Oxidation-Reduction, Species Specificity, Bacteria drug effects, Chlorates pharmacology, Nitrates metabolism, Soil Microbiology
- Abstract
Fours strains of nitrate reducing bacteria isolated from soil were studied for their behavior towards chlorate. They are facultative anaerobes, except for Bacillus megatherium (which is a strict aerobe) and they possess a nitrate reductase A. The growth of three strains of bacteria (Klebsiella pneumoniae, B. licheniformis and Micromonospora globosa) was slowed by sodium chlorate at a concentration of 0.06 to 0.1% while the other strain (B. megatherium) tolerated the CIO3- well. The delay of bacterial growth due to chlorate lasts for a certain period, after which the bacteria multiply again. The lag phase is due to small quantities of chlorite produced from the chlorate; the growth phase which follows is provoked by the multiplication of chlorate resistant mutants, most often nitrate reductase-negative and sometimes positive. Some reverse mutants nitrate reductase positive of K. pneumoniae no longer had the same characteristics as the wild strain: some resisted to chlorate or were different as to gas formation. The reduction of nitrate to ammonia by these bacteria is diminished in the presence of chlorate: the reduction of nitrate to nitrite was inhibited or not inhibited according to the type of strain. The bacteria broke down the chlorate partially or completely, according to the strains and the sustrates.
- Published
- 1979
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