28 results on '"Kathryn Gallagher"'
Search Results
2. Perfluorooctane Sulfonate in US Ambient Surface Waters: A Review of Occurrence in Aquatic Environments and Comparison to Global Concentrations
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Brian Schnitker, Amanda L. Jarvis, James R. Justice, Kathryn Gallagher, and Michael C. Elias
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Fluorocarbons ,geography ,geography.geographical_feature_category ,Resistance (ecology) ,Range (biology) ,Health, Toxicology and Mutagenesis ,Aquatic ecosystem ,Estuary ,Article ,Perfluorooctane ,chemistry.chemical_compound ,Alkanesulfonic Acids ,chemistry ,Aquatic environment ,Environmental chemistry ,Environmental Chemistry ,Environmental science ,Freshwater systems ,Ecosystem ,Water Pollutants, Chemical ,Environmental Monitoring ,Potential toxicity - Abstract
Perfluorooctane sulfonate (PFOS) is one of the dominant perfluoroalkyl substances (PFAS) detected in aquatic ecosystems. It has been used in a wide range of industrial and consumer products for decades. The unique properties of PFOS, including its stability and resistance to degradation, have made it highly persistent in the aquatic environment. Because of its persistence, potential toxicity, and occurrence in aquatic ecosystems, interest in PFOS has increased in recent decades. Despite this interest, current information on the environmental distribution of PFOS in ambient surface waters of the United States is fairly limited. This critical review summarizes the currently available literature on PFOS occurrence in surface waters across the United States and highlights existing data gaps. Available data are largely from a handful of study areas with known PFAS manufacturing or industrial uses, with much of the data collected from freshwater systems in eastern states and the upper Midwest. Measured PFOS concentrations in surface waters vary widely, over 8 orders of magnitude, with the highest concentrations occurring downstream from manufacturing and industrial use plants, areas near aqueous film-forming foam-use sites, and sites where PFOS precursors were used in textile treatment. Non-point source-related occurrences are highest near urbanized areas with high population densities. Current data illustrate the occurrence of PFOS in surface waters across multiple US states. Additional data are needed to better understand PFOS occurrence in US aquatic ecosystems, particularly in estuarine and marine systems and where monitoring data are not available (e.g., southwestern, central, and western United States). Additional PFOS occurrence data would provide valuable information on potential spatial and temporal variability in surface waters and possible risks posed to aquatic ecosystems. Environ Toxicol Chem 2021;40:2425-2442. Published 2021. This article is a U.S. Government work and is in the public domain in the USA.
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- 2021
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3. Direct and Delayed Mortality of Ceriodaphnia dubia and Rainbow Trout Following Time‐Varying Acute Exposures to Zinc
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Jeffery A. Steevens, Christopher A. Mebane, Danielle Cleveland, Ning Wang, Christopher D. Ivey, Michael C. Elias, Robert N. Brent, James R. Justice, and Kathryn Gallagher
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Toxicodynamics ,Health, Toxicology and Mutagenesis ,chemistry.chemical_element ,Metal toxicity ,Zinc ,Animal science ,Water Quality ,Time‐variable toxicity ,Environmental Chemistry ,Latent effects ,Animals ,biology ,Water quality criteria ,Ceriodaphnia dubia ,Pulse exposures ,biology.organism_classification ,Cladocera ,Environmental Toxicology ,Trout ,chemistry ,Oncorhynchus mykiss ,Toxicity ,Environmental toxicology ,Rainbow trout ,Water Pollutants, Chemical - Abstract
The potential for delayed mortality following short‐term episodic pollution events was evaluated by exposing cladocerans (Ceriodaphnia dubia) and rainbow trout (Oncorhynchus mykiss) to zinc (Zn) in various 1‐ to 48‐h and 1‐ to 96‐h exposures, respectively, followed by transferring the exposed organisms to clean water for up to 47 h for C. dubia and up to 95 h for trout for additional observation. For C. dubia, 1‐h exposures of up to 3790 µg Zn/L never resulted in mortality during the actual Zn exposures, but by 48 h, a 1‐h exposure to 114 µg/L, a concentration similar to the present US national water quality acute criterion for the test water conditions, ultimately killed 70% of C. dubia. With C. dubia, the speed of action of Zn toxicity was faster for intermediate concentrations than for the highest concentrations tested. For rainbow trout, pronounced delayed mortalities by 96 h only occurred following ≥8‐h exposures. For both species, ultimate mortalities from Zn exposures ≤8 h mostly presented as delayed mortalities, whereas for exposures ≥24 h, almost all ultimate mortalities presented during the actual exposure periods. With Zn, risks of delayed mortality following exposures to all concentrations tested were much greater for the more sensitive, small‐bodied invertebrate (C. dubia) than for the less sensitive, larger‐bodied fish (rainbow trout). These results, along with previous studies, show that delayed mortality is an important consideration in evaluating risks to aquatic organisms from brief, episodic exposures to some substances. Environ Toxicol Chem 2021;40:2484–2498. © 2021 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC. This article has been contributed to by US Government employees and their work is in the public domain in the USA., Rainbow trout could withstand extreme Zn pulses of 1 to 3 h, with few subsequent deaths. Few Ceriodaphnia dubia died during 1‐ to 3‐h Zn pulses, but after 48 h, most were dead. Time to effects decreased as expected as rainbow trout were exposed to increasing Zn concentrations. Not so with C. dubia: time to effects was fastest in intermediate Zn exposures, with longer survivals in higher Zn exposures.
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- 2021
4. Effects of GLP-1 and GIP on islet function in glucose intolerant, pancreatic insufficient cystic fibrosis
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Michael R. Rickels, Andrea Kelly, Ronald C. Rubenstein, David A. D’Alessio, Robert Gallop, Darko Stefanovski, Saba Sheikh, Denis Hadjiliadis, Diva D. De Leon, Anneliese J. Flatt, Abigail Tami, Andriana Doliba, Kathryn Gallagher, Jack N. Eiel, Amy J. Peleckis, and Sarah C. Nyirjesy
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Impaired insulin and incretin secretion underlie abnormal glucose tolerance (AGT) in pancreatic insufficient cystic fibrosis (PI-CF). Whether the incretin hormones glucagon-like peptide-1 (GLP-1) and glucose-dependent insulinotropic polypeptide (GIP) can enhance pancreatic islet function in CF is not known. We studied 32 adults with PI-CF and AGT randomized to receive either GLP-1 (n=16) or GIP (n=16) during glucose-potentiated arginine (GPA) testing of islet function on two occasions with either incretin or placebo infused by randomized, double-blind, cross-over fashion. Another 4 adults with PI-CF and normal glucose tolerance (NGT) and 4 matched non-CF controls underwent similar assessment with GIP. In PI-CF with AGT, GLP-1 substantially augmented second-phase insulin secretion, but without effect on the acute insulin response to GPA or the proinsulin secretory ratio (PISR), while GIP infusion did not enhance second phase or GPA-induced insulin secretion but increased the PISR. GIP also did not enhance second-phase insulin in PI-CF with NGT but did so markedly in non-CF controls. These data indicate that GLP-1, but not GIP, augments glucose-dependent insulin secretion in PI-CF, supporting the likelihood that GLP-1 agonists could have therapeutic benefit in this population. Understanding loss of GIP’s insulinotropic action in PI-CF may lead to novel insights into diabetes pathogenesis.
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- 2022
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5. 828-P: Preservation of ß-Cell Function in Pancreatic Insufficient Cystic Fibrosis (CF) with Highly Effective CFTR Modulator Therapy
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ANNELIESE FLATT, SABA SHEIKH, AMY J. PELECKIS, KATHRYN GALLAGHER, PAOLA ALVARADO, DENIS HADJILIADIS, DARKO STEFANOVSKI, ROBERT J. GALLOP, RONALD C. RUBENSTEIN, MICHAEL R. RICKELS, and ANDREA KELLY
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Endocrinology, Diabetes and Metabolism ,Internal Medicine - Abstract
CF related diabetes is common with pancreatic insufficient CF (PI-CF) . Highly effective modulator therapy enhances aberrant CF transmembrane conductance regulator (CFTR) function and improves pulmonary and nutritional status. Ivacaftor therapy for indicated CFTR mutations enhanced insulin secretion to glucose-potentiated arginine (GPA) testing; however the effects of elexacaftor/tezacaftor/ivacaftor (ETI; Trikafta™) on β-cell function have not been assessed. We retrospectively compared changes in GPA measures performed on two visits in individuals with PI-CF without diabetes and who were 1) initiated on ETI after the baseline visit (ETI group) vs. 2) not treated with CFTR modulator therapy (controls) . ETI participants (mean±SD age 27±9 years) and 8 matched controls were followed up after a median (IQR) 5.8 (3.7-6.7) and 2.7 (1.9-3.0) years, respectively (p=0.001) , with ETI initiation 1.1 (0.2-1.2) years before the follow-up visit. Weight increased in both groups, but by more in the ETI group (p Acute insulin and C-peptide responses to glucose-potentiated arginine deteriorated in controls (p ETI therapy appears to preserve β-cell function in CF through effects on glucose-dependent insulin secretion and proinsulin processing. Further work should determine whether early intervention with ETI can prevent deterioration of glucose tolerance in PI-CF. Disclosure A.Flatt: None. M.R.Rickels: Advisory Panel; Sernova, Corp., Vertex Pharmaceuticals Incorporated, Zealand Pharma A/S, Consultant; L-Nutra Inc. A.Kelly: Research Support; vTv Therapeutics. S.Sheikh: None. A.J.Peleckis: None. K.Gallagher: None. P.Alvarado: None. D.Hadjiliadis: Advisory Panel; AstraZeneca, Research Support; Mylan N.V. D.Stefanovski: None. R.J.Gallop: None. R.C.Rubenstein: None. Funding Public Health Service research grants (RDK97830; K23 DK107937; UL1 TR001878) and National Institutes of Health (P30 DK19525) .
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- 2022
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6. Effects of GLP-1 and GIP on Islet Function in Glucose-Intolerant, Pancreatic-Insufficient Cystic Fibrosis
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Sarah C. Nyirjesy, Amy J. Peleckis, Jack N. Eiel, Kathryn Gallagher, Andriana Doliba, Abigail Tami, Anneliese J. Flatt, Diva D. De Leon, Denis Hadjiliadis, Saba Sheikh, Darko Stefanovski, Robert Gallop, David A. D’Alessio, Ronald C. Rubenstein, Andrea Kelly, and Michael R. Rickels
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Adult ,Blood Glucose ,Cystic Fibrosis ,Endocrinology, Diabetes and Metabolism ,Gastric Inhibitory Polypeptide ,Arginine ,Glucagon ,Incretins ,Glucose ,Glucagon-Like Peptide 1 ,Internal Medicine ,Humans ,Insulin ,Proinsulin - Abstract
Impaired insulin and incretin secretion underlie abnormal glucose tolerance (AGT) in pancreatic insufficient cystic fibrosis (PI-CF). Whether the incretin hormones glucagon-like peptide-1 (GLP-1) and glucose-dependent insulinotropic polypeptide (GIP) can enhance pancreatic islet function in cystic fibrosis (CF) is not known. We studied 32 adults with PI-CF and AGT randomized to receive either GLP-1 (n = 16) or GIP (n = 16) during glucose-potentiated arginine (GPA) testing of islet function on two occasions, with either incretin or placebo infused, in a randomized, double-blind, cross-over fashion. Another four adults with PI-CF and normal glucose tolerance (NGT) and four matched control participants without CF underwent similar assessment with GIP. In PI-CF with AGT, GLP-1 substantially augmented second-phase insulin secretion but without effect on the acute insulin response to GPA or the proinsulin secretory ratio (PISR), while GIP infusion did not enhance second-phase or GPA-induced insulin secretion but increased the PISR. GIP also did not enhance second-phase insulin in PI-CF with NGT but did so markedly in control participants without CF controls. These data indicate that GLP-1, but not GIP, augments glucose-dependent insulin secretion in PI-CF, supporting the likelihood that GLP-1 agonists could have therapeutic benefit in this population. Understanding loss of GIP’s insulinotropic action in PI-CF may lead to novel insights into diabetes pathogenesis.
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- 2022
7. Increasing Insulin Pump Use Among 12- to 26-Year-Olds With Type 1 Diabetes: Results From the T1D Exchange Quality Improvement Collaborative
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Joyce M. Lee, Ori Odugbesan, Rona Sonabend, G. Todd Alonso, Ashley Garrity, Kathryn Gallagher, Ilona Lorincz, Nicole Rioles, Osagie Ebekozien, Sarah K. Lyons, Don Buckingham, Sarah L. Thomas, and Manmohan K. Kamboj
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Insulin pump ,medicine.medical_specialty ,Type 1 diabetes ,Quality management ,business.industry ,Endocrinology, Diabetes and Metabolism ,Insulin ,medicine.medical_treatment ,Psychological intervention ,Telehealth ,Onboarding ,medicine.disease ,Special Collection: T1D Exchange Quality Improvement Collaborative ,Emergency medicine ,Internal Medicine ,medicine ,business ,Glycemic - Abstract
Insulin pump therapy in pediatric type 1 diabetes has been associated with better glycemic control than multiple daily injections. However, insulin pump use remains limited. This article describes an initiative from the T1D Exchange Quality Improvement Collaborative aimed at increasing insulin pump use in patients aged 12–26 years with type 1 diabetes from a baseline of 45% in May 2018 to >50% by February 2020. Interventions developed by participating centers included increasing in-person and telehealth education about insulin pump technology, creating and distributing tools to assist in informed decision-making, facilitating insulin pump insurance approval and onboarding processes, and improving clinic staff knowledge about insulin pumps. These efforts yielded a 13% improvement in pump use among the five participating centers, from 45 to 58% over 22 months.
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- 2021
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8. 145-LB: Improving Continuous Glucose Monitoring (CGM) Use across Ten National Centers: Results from the T1D Exchange Quality Improvement Collaborative (T1DX-QI)
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Kathryn Gallagher, Ryan Mcdonough, Osagie Ebekozien, Sarah Corathers, Nicole Rioles, Sarah Thomas, Priya Prahalad, Kathryn Obrynba, Ruth S. Weinstock, Joyce M. Lee, and Daniel J. DeSalvo
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Quality management ,Nursing ,Continuous glucose monitoring ,Endocrinology, Diabetes and Metabolism ,Internal Medicine ,Psychological intervention ,Medicaid coverage ,Collaborative learning ,Psychology ,PDCA ,Patient education ,Test (assessment) - Abstract
Many studies have demonstrated the clinical benefit of continuous glucose monitoring (CGM) in type 1 diabetes (T1D). Although favorable insurance policy changes have gradually increased the access of CGM nationally, widespread uptake has been slow. The T1DX-QI is a national type 1 diabetes learning collaborative coordinated by the T1D Exchange in Boston, MA. This work describes how 10 diabetes centers in the T1DX-QI used QI principles including the Plan - Do - Study - Act (PDSA) cycles to test and expand different interventions to increase CGM use in their respective centers. Successful efforts include the redesign of relevant workflows, assessing and removing barriers to adoption, developing CGM patient education classes, and advocating for state Medicaid coverage of CGM. The centers piloted these changes in 12 - 26 year olds with T1D. The coordinating center used statistical process control charts to evaluate the effectiveness of the interventions (Figure 1). Eight of 10 participating centers improved CGM use significantly. There was a 12% improvement from over 20 months across the entire cohort of centers (range 7-34%). This demonstrates that by using QI principles to test interventions and cross-learning, the T1D community can increase use of CGM devices. Figure 1. Disclosure O. Ebekozien: None. N. Rioles: None. D. DeSalvo: Consultant; Self; Dexcom, Inc., Insulet Corporation. K. Gallagher: None. J.M. Lee: Advisory Panel; Self; Goodrx. Consultant; Self; T1D Exchange. Research Support; Self; Lenovo. R. McDonough: None. K. Obrynba: None. P. Prahalad: None. S. Thomas: None. R.S. Weinstock: Board Member; Self; JDRF. Consultant; Self; Insulogic LLC. Research Support; Self; Boehringer Ingelheim International GmbH, Diasome Pharmaceuticals, Inc., Eli Lilly and Company, Insulet Corporation, Jaeb Center for Health Research, Kowa Research Institute, Inc., Medtronic, Tolerion, Inc. S. Corathers: None. Funding The Leona M. and Harry B. Helmsley Charitable Trust
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- 2020
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9. 150-LB: Moving the Needle on the High-Risk T1D Panel: Lessons from the T1D Exchange Quality Improvement Collaborative (T1DX-QI)
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Ashley Garrity, Nicole Rioles, Priya Prahalad, Cassandra Bunker, Kathryn Gallagher, Osagie Ebekozien, Manmohan K. Kamboj, Shideh Majidi, Nana-Hawa Jones, Mark A. Clements, Katie Thivener, and Rona Y. Sonabend
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Insulin pump ,Type 1 diabetes ,medicine.medical_specialty ,Quality management ,High risk patients ,business.industry ,Endocrinology, Diabetes and Metabolism ,Psychological intervention ,medicine.disease ,Depression screening ,Increased risk ,Family medicine ,Internal Medicine ,medicine ,Social determinants of health ,business - Abstract
There is an increased risk of complications among “high risk” patients (having elevated HbA1c scores). Social, racial, and economic factors contribute to the difficulty in reducing HbA1c. The T1DX-QI is a type 1 diabetes learning health system with over 10 endocrinology centers working collaboratively on the goal of improving outcomes for people with type 1 diabetes. The program is coordinated by the T1D Exchange in Boston, MA. “High-risk” patients are defined as having two clinic visits in the preceding 12 months and two HbA1cs above 9%. Centers shared data monthly with the coordinating office which used statistical process control charts to evaluate the effectiveness of the interventions. (Figure 1). This abstract describes how 10 centers used QI principles and interventions to reduce the proportion of high-risk patients. Successful efforts include: utilizing a patient navigator, workflow redesign, developing insulin pump and CGM education classes, depression screening, and addressing social determinants of health. The Collaborative set a goal to decrease percentage of high risk patients by 5% from baseline and made a significant 3% improvement; data is projected to meet goal by June 2020. Six of 10 centers met the goal, impacting over 200 patients. Continued efforts are needed to expand interventions to additional sites to reduce the number of high-risk patients. Disclosure N. Rioles: None. C. Bunker: None. M.A. Clements: Consultant; Self; Glooko, Inc. Other Relationship; Self; Glooko, Inc. K. Gallagher: None. A. Garrity: None. N. Jones: None. M.K. Kamboj: Research Support; Self; Type 1 Diabetes TrialNet, Unitio, Inc. S. Majidi: Advisory Panel; Self; Companion Medical. P. Prahalad: None. R.Y. Sonabend: None. K. Thivener: None. O. Ebekozien: None. Funding The Leona M. and Harry B. Helmsley Charitable Trust
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- 2020
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10. Quality of work life in the resort spa industry
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Kathryn Gallagher and Mary Wisnom
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Tourist industry ,business.industry ,media_common.quotation_subject ,General Medicine ,Quality of work life ,Workforce ,Job satisfaction ,Quality (business) ,sense organs ,Business ,Marketing ,skin and connective tissue diseases ,Human resources ,media_common - Abstract
Due to the rapid growth and the changing economy in recent years, spas have experienced increased challenges in the recruitment and retention of a quality workforce. This has resulted in greater co...
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- 2018
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11. How omics technologies can enhance chemical safety regulation: perspectives from academia, government, and industry
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Stuart Marshall, Adam D. Biales, Keith Sappington, Kathryn Gallagher, Mark R. Viant, Graham Whale, John K. Colbourne, Tala R. Henry, Bruno Campos, and James B. Brown
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0301 basic medicine ,Government ,Knowledge management ,business.industry ,Health, Toxicology and Mutagenesis ,MEDLINE ,010501 environmental sciences ,01 natural sciences ,03 medical and health sciences ,030104 developmental biology ,Chemical safety ,Environmental Chemistry ,Business ,0105 earth and related environmental sciences ,Omics technologies - Published
- 2018
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12. State of the Science on Metal Bioavailability Modeling: Introduction to the Outcome of a Society of Environmental Toxicology and Chemistry Technical Workshop
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Kathryn Gallagher, William A. Stubblefield, and Christian E. Schlekat
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Aquatic Organisms ,040301 veterinary sciences ,Health, Toxicology and Mutagenesis ,Biological Availability ,Fresh Water ,010501 environmental sciences ,Ecotoxicology ,Ligands ,01 natural sciences ,Models, Biological ,Risk Assessment ,Article ,0403 veterinary science ,Environmental Chemistry ,Animals ,State of the science ,0105 earth and related environmental sciences ,Management science ,Biotic Ligand Model ,04 agricultural and veterinary sciences ,Congresses as Topic ,Metal bioavailability ,Bioavailability ,Metals ,Environmental toxicology ,Freshwater systems - Abstract
A Society of Environmental Toxicology and Chemistry technical workshop was held in December 2017 to critically evaluate the current state of the science of metal bioavailability modeling. The availability of mechanistic models such as the biotic ligand model and the rapid development of empirical models such as multiple linear regressions means that choices are available in terms of bioavailability normalization approaches that can be used in metal risk assessments and the development of risk-based protective values for aquatic life. A key goal of the workshop was to provide potential users of metal bioavailability models with the information required to make appropriate decisions when choosing among mechanistic and empirical models. Workshop participants focused on the state of the science of metal bioavailability modeling, mechanistic and empirical model frameworks, validation of bioavailability models, and application of bioavailability models in risk-based decision-making approaches. The output of this workshop provides the necessary scientific information to incorporate bioavailability normalization in regulations pertaining to metals in freshwater systems. Environ Toxicol Chem 2019;39:42-47. © 2019 SETAC.
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- 2019
13. Does educational intervention affect resident competence in sonographic cervical length measurement?
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Martin R. Chavez, Kathryn Gallagher, Anthony M. Vintzileos, Wendy L. Kinzler, and Sevan A. Vahanian
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medicine.medical_specialty ,Pathology ,Teaching module ,Cervix Uteri ,Cohort Studies ,Obstetrics and gynaecology ,Pregnancy ,medicine ,Humans ,Image acquisition ,Prospective Studies ,Single institution ,Prospective cohort study ,Competence (human resources) ,Cervical length ,business.industry ,Internship and Residency ,Obstetrics and Gynecology ,Cervical Length Measurement ,Obstetrics ,Education, Medical, Graduate ,Pediatrics, Perinatology and Child Health ,Physical therapy ,Female ,Clinical Competence ,business - Abstract
To determine if a structured teaching module improves resident competency in transvaginal sonographic cervical length measurements.This was a prospective cohort study involving obstetrics and gynecology residents at a single institution. Residents collected 10 transvaginal cervical images from patients with threatened preterm labor presenting to Labor and Delivery. After initial image acquisition, residents participated in a lecture-based teaching module involving a pre- and post-intervention assessment. Following the didactic session, they collected 10 additional images. All the images were scored independently by two Maternal-Fetal Medicine attending physicians based on the quality and accuracy of the measured cervical length. Pre-and post- intervention test results were compared, as well as pre- and post- intervention image scores. Parametric and nonparametric tests were used as appropriate with p 0.05 considered significant.Ninety-three percent of the residents (14/15) improved their scores from pre-test to post-test or maintained an already perfect score (p 0.01). Improvement was most significant with the junior residents. Seventy-nine percent of the residents (11/14) improved their cervical image scores after the educational session. Mean score for total residents was 73.7 + 12.6 pre-intervention and 90.2 + 9.9 post-intervention (p 0.01) out of a total of 120.There is an improvement in the competence of resident measured cervical lengths via transvaginal ultrasound when a structured educational module is implemented for resident education.
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- 2015
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14. A framework for the use of genomics data at the EPA
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William H. Farland, Brenda L Groskinsky, J. Thomas McClintock, David J. Dix, William H. Benson, Kathryn Gallagher, and Kerry L. Dearfield
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Knowledge management ,Quality Assurance, Health Care ,Best practice ,Biomedical Engineering ,MEDLINE ,Information Storage and Retrieval ,Guidelines as Topic ,Bioengineering ,Genomics ,Applied Microbiology and Biotechnology ,Government regulation ,Environmental protection ,Databases, Genetic ,Agency (sociology) ,United States Environmental Protection Agency ,Reference standards ,Oligonucleotide Array Sequence Analysis ,business.industry ,Reference Standards ,United States ,Government Regulation ,Molecular Medicine ,Business ,Quality assurance ,Biotechnology - Abstract
The US Environmental Protection Agency is developing a new guidance that outlines best practice in the submission, quality assurance, analysis and management of genomics data for environmental applications.
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- 2006
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15. The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
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Alan Brunner, Glenda C. Delenstarr, Timothy K. McDaniel, Lisa J. Croner, Chunlin Xiao, Raymond R. Samaha, Wen Yang, Lei Guo, Stephen J. Walker, Terry Osborn, Federico Goodsaid, P. Scott Pine, J. Christopher Corton, Yuling Luo, Yaron Turpaz, Alexander Wong, Raj K. Puri, Jean Thierry-Mieg, Michael A Wilson, Anne Bergstrom Lucas, Heather Harbottle, Eli Hatchwell, Donna Brown, Jie Wu, Shawn Levy, Wendell D. Jones, Ola Myklebost, Craig A. Hauser, Vincent Bertholet, J. Eugene LeClerc, David J. Dix, Scott A. Jackson, Eugene Chudin, Beena Vallanat, Susan D. Hester, Mark Schena, Barry A. Rosenzweig, James J. Chen, Paul K. Wolber, Adam Papallo, Yongming Andrew Sun, Shawn C. Baker, Uwe Scherf, Zoltan Szallasi, William Slikker, Kenneth L. Philips, Xutao Deng, Lajos Pusztai, Sue Jane Wang, Janet Hager, Xu Guo, Tao Han, Charles Wang, Frank Staedtler, Hongmei Sun, Svetlana Shchegrova, Christopher Davies, Liang Zhang, James C. Willey, Yaping Zong, Kathleen Y. Lee, Paul K. Haje, James C. Fuscoe, Ying Liu, Natalia Novoradovskaya, Russell D. Wolfinger, Kathryn Gallagher, Roderick V. Jensen, Feng Qian, Wenjun Bao, Christophe Van, Bud Bromley, Janet A. Warrington, Leming Shi, Tucker A. Patterson, David Dorris, Huixiao Hong, Winston Patrick Kuo, Hongzu Ren, Xiaoxi Megan Cao, Cecilie Boysen, Michael S. Orr, Danielle Thierry-Mieg, Xiaohui Fan, Felix W. Frueh, Gary P. Schroth, Yonghong Wang, Chunmei Liu, Yunqing Ma, Shashi Amur, Lu Zhang, Michael Lombardi, Dave D. Smith, Tzu Ming Chu, Jun Xu, Charles D. Johnson, Baitang Ning, Timothy Davison, Botoul Maqsodi, Karol L. Thompson, Thomas A. Cebula, Richard Shippy, Edward K. Lobenhofer, Weida Tong, Quan Zhen Li, Catalin Barbacioru, Qian Xie, Aron Charles Eklund, Ernest S. Kawasaki, Patrick J. Collins, Zivana Tezak, Elizabeth Herness Peters, Francoise de Longueville, Stephanie Fulmer-Smentek, Hong Fang, Patrick Hurban, Scott R. Magnuson, Hanlee P. Ji, Roger Perkins, Mitch Rosen, Ron L. Peterson, Weigong Ge, Stephen C. Harris, Sheng Zhong, Charles R. Knight, Damir Herman, Zhenqiang Su, Roger D. Canales, Nan Mei, Jing Cheng, Irina Tikhonova, Gavin M. Fischer, Laura H. Reid, Robert Setterquist, Yvonne P. Dragan, Jing Han, and John F. Corson
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Quality Control ,Quality Assurance, Health Care ,Microarray ,media_common.quotation_subject ,Biomedical Engineering ,Bioengineering ,Computational biology ,Biology ,Bioinformatics ,Sensitivity and Specificity ,Applied Microbiology and Biotechnology ,Article ,Resource (project management) ,Gene expression ,Quality (business) ,Oligonucleotide Array Sequence Analysis ,media_common ,Gene Expression Profiling ,Reproducibility of Results ,Equipment Design ,United States ,Equipment Failure Analysis ,Gene expression profiling ,Expression data ,Gene chip analysis ,Molecular Medicine ,DNA microarray ,Biotechnology - Abstract
Over the last decade, the introduction of microarray technology has had a profound impact on gene expression research. The publication of studies with dissimilar or altogether contradictory results, obtained using different microarray platforms to analyze identical RNA samples, has raised concerns about the reliability of this technology. The MicroArray Quality Control (MAQC) project was initiated to address these concerns, as well as other performance and data analysis issues. Expression data on four titration pools from two distinct reference RNA samples were generated at multiple test sites using a variety of microarray-based and alternative technology platforms. Here we describe the experimental design and probe mapping efforts behind the MAQC project. We show intraplatform consistency across test sites as well as a high level of interplatform concordance in terms of genes identified as differentially expressed. This study provides a resource that represents an important first step toward establishing a framework for the use of microarrays in clinical and regulatory settings.
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- 2006
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16. Genomics: Applications, Challenges, and Opportunities for the U.S. Environmental Protection Agency
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Lawrence W. Reiter, Kerry L. Dearfield, Richard Troast, William H. Benson, David L. Lattier, Michael Brody, Rebecca D. Klaper, Nancy E McCarroll, Anita Street, Philip Sayre, Julian Preston, Gregory G. Miller, Kathryn Gallagher, Bobbye Smith, Vanessa Vu, Jennifer Seed, Jafrul Hasan, Anne Fairbrother, Susan Lundquist, and William H. Farland
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Prioritization ,Human health ,business.industry ,Environmental protection ,Health, Toxicology and Mutagenesis ,Ecological Modeling ,Agency (sociology) ,Environmental resource management ,Genomics ,Risk assessment ,business ,Pollution - Abstract
Genomics information has great potential to enhance assessment of risks to human health and the environment. Although understanding genomic responses with respect to adverse ecological and human health outcomes is not, as yet, established, it is important to consider the likely future impacts of genomics technologies on risk assessment and decision-making. Four areas are identified as those likely to be influenced by the generation of genomics information within, and the submission of such information to, the U.S. Environmental Protection Agency (USEPA): risk assessment, prioritization of contaminants and contaminated sites, monitoring, and reporting provisions. For each of these risk assessment and regulatory applications, representative activities are presented to illustrate the application. Three major challenges for the USEPA associated with genomics are also identified in the areas of research, technical development, and capacity. The USEPA's initial activities to address these challenges ar...
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- 2006
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17. Effects of pond water, sediment, and sediment extracts from minnesota and vermont, USA, on early development and metamorphosis of xenopus
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James G. Burkhart, Enos L. Stover, Judy C. Helgen, Timothy L. Propst, Douglas J. Fort, Kathryn Gallagher, and Rick B. Levey
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Amphibian ,Ecology ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,Xenopus ,Sediment ,Water sediment ,Model system ,Biology ,biology.organism_classification ,Glandula endocrina ,biology.animal ,Environmental Chemistry ,Bioassay ,Metamorphosis ,media_common - Abstract
In recent studies, a high incidence of amphibian mortality and malformation has been reported in the field, suggesting that toxic and/or bioactive agents are present in the environment of the affected amphibians. This study provides evidence for this hypothesis, because it applies to several affected ponds in Minnesota and Vermont, USA. Three developmental bioassays were carried out on samples from three reference and three test sites in Minnesota and one reference and three test sites, in Vermont. The bioassays utilized Xenopus as a model system, measuring altered developmental patterns during the first 4 d of development (frog embryo teratogenesis assay-Xenopus [FETAX]), hind-limb development over a 30-d period, and tail length resorption over a 14-d period. Strong correlations were observed among the results for all three in vitro bioassays, as well as between adverse developmental effects in vitro and in the field.
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- 1999
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18. Induction of mortality and malformation in Xenopus laevis embryos by water sources associated with field frog deformities
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Judy C. Helgen, Dorothy Bowers, James G. Burkhart, Mark C. Gernes, George W. Lucier, Douglas J. Fort, Michael D. Shelby, Kathryn Gallagher, Joe Magner, and Timothy L. Propst
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Water matrix ,Health, Toxicology and Mutagenesis ,Water source ,Toxicity ,Public Health, Environmental and Occupational Health ,Dose dependence ,Xenopus ,Zoology ,Embryo ,Limited evidence ,Biology ,biology.organism_classification ,Teratology - Abstract
Water samples from several ponds in Minnesota were evaluated for their capacity to induce malformations in embryos of Xenopus laevis. The FETAX assay was used to assess the occurrence of malformations following a 96-hr period of exposure to water samples. These studies were conducted following reports of high incidences of malformation in natural populations of frogs in Minnesota wetlands. The purpose of these studies was to determine if a biologically active agent(s) was present in the waters and could be detected using the FETAX assay. Water samples from ponds with high incidences of frog malformations (affected sites), along with water samples from ponds with unaffected frog populations (reference sites), were studied. Initial experiments clearly showed that water from affected sites induced mortality and malformation in Xenopus embryos, while water from reference sites had little or no effect. Induction of malformation was dose dependent and highly reproducible, both with stored samples and with samples taken at different times throughout the summer. The biological activity of the samples was reduced or eliminated when samples were passed through activated carbon. Limited evidence from these samples indicates that the causal factor(s) is not an infectious organism nor are ion concentrations or metals responsible for the effects observed. Results do indicate that the water matrix has a significant effect on the severity of toxicity. Based on the FETAX results and the occurrence of frog malformations observed in the field, these studies suggest that water in the affected sites contains one or more unknown agents that induce developmental abnormalities in Xenopus. These same factors may contribute to the increased incidence of malformation in native species.
- Published
- 1998
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19. US Environmental Protection Agency's framework for human health risk assessment to inform decision making
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Kathryn Gallagher, Margaret McDonough, Kathleen Deener, Julie W. Fitzpatrick, Kathleen Raffaele, Michael Firestone, Deirdre L. Murphy, Rita Schoeny, Marian Olsen, Chris Dockins, and William Jordan
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Environmental justice ,Process (engineering) ,010401 analytical chemistry ,Stakeholder ,010501 environmental sciences ,Management Science and Operations Research ,01 natural sciences ,0104 chemical sciences ,IT risk management ,Human health ,Research council ,Environmental protection ,Agency (sociology) ,Business ,Statistics, Probability and Uncertainty ,Business and International Management ,Risk assessment ,0105 earth and related environmental sciences - Abstract
The US Environmental Protection Agency (EPA) has developed a framework for human health risk assessment to inform decision making. The National Research Council, in Science and Decisions, recommended that EPA adopt a framework for risk-based decision making, which maximises the utility of risk assessment. The framework considers the NRC's recommendations and builds upon existing agency guidance by emphasising the need to design risk assessments to provide information most applicable to the decision-making process. The framework ties together existing human health guidance, is flexible to accommodate the range of assessments conducted across the agency as well as future advances in risk assessment science, and considers overarching themes including environmental justice and susceptible lifestage risk. The framework integrates the concepts of planning and scoping and problem formulation and provides for incorporation of stakeholder involvement and peer review.
- Published
- 2017
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20. Induction of cytochrome P4501A in the mummichog (Fundulus heteroclitus) by the polychlorinated terphenyl formulation aroclor 5432
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Peter A. Van Veld, Kathryn Gallagher, Robert C. Hale, and John J. Stegeman
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biology ,Cytochrome ,Chemistry ,Health, Toxicology and Mutagenesis ,Cytochrome P450 ,biology.organism_classification ,Enzyme assay ,Fundulus ,Mummichog ,chemistry.chemical_compound ,Polychlorinated terphenyls ,Terphenyl ,Environmental chemistry ,Toxicity ,biology.protein ,Environmental Chemistry - Abstract
Accumulation of the polychlorinated terphenyl formulation Aroclor 5432 in aquatic species has previously been reported. Polychlorinated terphenyls (PCTs) are structurally similar to polychlorinated biphenyls (PCBs), and were used in related applications. However, their biological effects have not been thoroughly studied. Effects of PCT mixtures on levels of hepatic cytochrome P4501A (P4501A) and associated ethoxyresorufin O-deethylase (EROD) activity in the mummichog (Fundulus heteroclitus), a common estuarine fish, were assessed here. Fish were injected intraperitoneally with PCT formulations Aroclor 5432, Aroclor 5460, or the PCB formulation Aroclor 1254, at doses of 0.32 to 100 mg/kg body weight. Elevated levels of P4501A and EROD activity were detected in fish injected with Aroclor 5432 and Aroclor 1254 doses of 32 and 100 mg/kg. Induction resulting from Aroclor 5432 was greater than that caused by equivalent doses of Aroclor 1254. Treatment with Aroclor 5460 did not result in significant induction. Because commercial PCT mixtures contain small amounts of PCBs, the PCB components may have contributed to the induction observed for Aroclor 5432. This work represents the first report of hepatic cytochrome P4501A induction caused by Aroclor 5432 in teleosts and, similar to work in mammalian systems, suggests that the effects of this mixture may bemore » at least partially mediated through Ah receptor binding.« less
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- 1995
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21. Toxicogenomics and the Regulatory Framework
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Melissa Kramer, Kathryn Gallagher, William H. Benson, Philip Sayre, Banalata Sen, David J. Dix, Nancy E McCarroll, Federico Goodsaid, Julian Preston, Douglas C. Wolf, and Susan Y. Euling
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Computational biology ,Biology ,Bioinformatics ,Toxicogenomics - Published
- 2011
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22. Distribution of Polychlorinated Terphenyls in Tributaries of the Southern Chesapeake Bay
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George G. Vadas, John Greaves, Kathryn Gallagher, Robert C. Hale, and Ellen Harvey
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Fishery ,chemistry.chemical_compound ,geography ,geography.geographical_feature_category ,Polychlorinated terphenyls ,Oceanography ,chemistry ,Chesapeake bay ,Tributary ,Polychlorinated biphenyl ,Environmental science ,Sediment ,Estuary - Published
- 2009
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23. Separation of polychlorinated terphenyls from lipoidal material by preparative gel permeation chromatography and gas chromatography
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Kathryn Gallagher, Jennifer L. Gundersen, Robert F. Mothershead, Robert C. Hale, and Elizabeth O. Bush
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Chromatography ,Elution ,Chemistry ,Organic Chemistry ,General Medicine ,Biochemistry ,Capillary gas chromatography ,Analytical Chemistry ,Gel permeation chromatography ,Polychlorinated terphenyls ,Molecular size ,polycyclic compounds ,Separation method ,%22">Fish ,Gas chromatography ,health care economics and organizations - Abstract
The potential of preparative gel permeation chromatography to separate polychlorinated terphenyls (PCTs) from lipoidal material derived from fish was investigated. When applied to styrene—divinylbenzene gel permeation chromatography columns, PCTs eluted prior to commonly examined environmental contaminants, such as polychlorinated biphenyls (PCBs). Coelution of PCTs with lipoidal material was observed with some columns tested, attributable to the large molecular size of the chlorinated terphenyls. Capillary gas chromatography coupled with electrolytic conductivity detection provided adequate characterization of two PCT formulations, Aroclor 5432 and 5460. Some lowly chlorinated PCTs eluted in the same retention window as highly chlorinated PCBs.
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- 1991
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24. Novel chlorinated terphenyls in sediments and shellfish of an estuarine environment
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George G. Vadas, Robert C. Hale, John Greaves, and Kathryn Gallagher
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Pollution ,Chemical ionization ,geography ,geography.geographical_feature_category ,biology ,Chemistry ,media_common.quotation_subject ,Sediment ,Estuary ,General Chemistry ,Bivalvia ,biology.organism_classification ,Polychlorinated terphenyls ,Environmental chemistry ,Environmental Chemistry ,Gas chromatography ,Shellfish ,media_common - Abstract
Polychlorinated terphenyls (PCTs) are structurally similar to polychlorinated biphenyls (PCBs) and have been used in analogous applications. Aroclor 5432, a PCT formulation whose congeners contain predominantly two to five chlorines, was detected in sediments and oysters from a saltmarsh creek and an adjacent Chesapeake Bay tributary, Back River. Reports of the occurrence of Aroclor 5432 are virtually nonexistent, although sporadic reports of the more highly chlorinated PCT formulation Aroclor 5460 have been published. Capillary gas chromatography with electrolytic conductivity detection was used for quantitation. Identifications were confirmed by both electron ionization and negative chemical ionization mass spectrometry. Sediment concentrations detected were as high as 250,000 {mu}g/kg (dry-weight basis). Oysters collected from these areas contained up to 35,000 {mu}g/kg. This value is equivalent to 6,300 {mu}g/kg, on a wet-weight basis, and exceeds the applicable US limit for PCBs in edible shellfish by more than a factor of 3.
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- 1990
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25. U.S. Environmental Protection Agency's activities to prepare for regulatory and risk assessment applications of genomics information
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William H. Benson, J. Thomas McClintock, and Kathryn Gallagher
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Risk analysis ,Epidemiology ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,Stakeholder ,Genomics ,Public Policy ,Risk Assessment ,United States ,White paper ,Environmental protection ,Interim ,Agency (sociology) ,Humans ,Quality (business) ,Business ,United States Environmental Protection Agency ,Risk assessment ,Genetics (clinical) ,media_common - Abstract
Genomics is expected to have significant implications for risk assessment and regulatory decision making. Since 2002, the U.S. Environmental Protection Agency (EPA) has undertaken a number of cross-agency activities to further prepare itself to receive, interpret, and apply genomics information for risk assessment and regulatory purposes. These activities include: (1) the issuance of an Interim Genomics Policy on the use of genomics information in risk assessments and decision making, (2) the release of the 2004 Genomics White Paper, which outlines potential applications and implications of genomics for EPA, and (3) the recent release of the external review draft of the Interim Guidance on Microarray-Based Assays, which outlines data submission, quality, analysis, management, and training considerations for such data. This manuscript discusses these activities and more recent follow-up activities with the aim of further communicating these efforts to the broader scientific and stakeholder community.
- Published
- 2007
26. Effects of pond water, sediment, and sediment extracts from minnesota and vermont, USA, on early development and metamorphosis of xenopus
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Douglas J, Fort, Timothy L, Propst, Enos L, Stover, Judy C, Helgen, Rick B, Levey, Kathryn, Gallagher, and James G, Burkhart
- Abstract
In recent studies, a high incidence of amphibian mortality and malformation has been reported in the field, suggesting that toxic and/or bioactive agents are present in the environment of the affected amphibians. This study provides evidence for this hypothesis, because it applies to several affected ponds in Minnesota and Vermont, USA. Three developmental bioassays were carried out on samples from three reference and three test sites in Minnesota and one reference and three test sites, in Vermont. The bioassays utilized Xenopus as a model system, measuring altered developmental patterns during the first 4 d of development (frog embryo teratogenesis assay-Xenopus [FETAX]), hind-limb development over a 30-d period, and tail length resorption over a 14-d period. Strong correlations were observed among the results for all three in vitro bioassays, as well as between adverse developmental effects in vitro and in the field.
- Published
- 1999
27. Sources and Distribution of Polychlorinated Terphenyls at a Major US Aeronautics Research Facility
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Curt Enos, Robert C. Hale, and Kathryn Gallagher
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Pollutant ,Global and Planetary Change ,Ecology ,Outfall ,chemistry.chemical_element ,Contamination ,Pollution ,Mercury (element) ,Polychlorinated terphenyls ,chemistry ,Aeronautics ,Bioaccumulation ,Environmental science ,Storm drain ,Water pollution - Abstract
/ High concentrations of an unusual, complex mixture of chlorinated compounds were discovered in sediments and oysters near a federal aeronautics facility during implementation of a pollutant screening protocol. The mixture was identified as Aroclor 5432, a polychlorinated terphenyl (PCT) formulation, produced in the US until 1972. PCTs, particularly low chlorinated mixtures, have rarely been reported in the environment, despite significant manufacture and usage. Releases were traced to two outfalls. Creek sediments downstream of one contained concentrations as high as 200,000 |gmg/kg (dry weight basis); those in indigenous oysters reached 35,000 |gmg/kg, indicating significant bioavailability and bioaccumulation potential. Subsequent work showed that PCTs were widely disseminated in marsh grass, crabs, and fish. PCTs, PCBs, and mercury were also detected in storm drain lines entering these outfalls. The lines received input from both storm water and research buildings. Historical hydraulic fluid leaks and in-service compressor fluids in some buildings contained PCTs and PCBs. Contaminated materials on-site were removed to minimize pollutant spread. Aroclor 5432 usage, most likely as compressor/hydraulic fluid additives, probably ended about ten years prior to its on-site detection. In terms of biological effects, intraperitoneal injection of fish with Aroclor 5432 induced cytochrome P-4501A (CYP1A) and ethoxyresorufin O-deethylase (EROD) activity to a similar degree as PCB Aroclor 1254 and to a greater extent than PCT Aroclor 5460. The presence of high concentrations of PCTs contributed to the facility being included on the National Priorities List. It subsequently became the first US federal facility to sign a Federal Facility Agreement, identifying cleanup responsibilities, prior to formal listing.KEY WORDS: Polychlorinated terphenyls; Aroclor; Contaminated sediments; Hydraulic fluid; Enzyme induction; Polychlorinated biphenyls
- Published
- 1998
28. INDUCTION OF CYTOCHROME P4501A IN THE MUMMICHOG (FUNDULUS HETEROCLITUS) BY THE POLYCHLORINATED TERPHENYL FORMULATION AROCLOR 5432
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Kathryn Gallagher, Peter A. Van Veld, Robert C. Hale, and John J. Stegeman
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Health, Toxicology and Mutagenesis ,Environmental Chemistry - Published
- 1995
- Full Text
- View/download PDF
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