49 results on '"Katrukha EA"'
Search Results
2. CAMSAPs and nucleation-promoting factors control microtubule release from γ-TuRC.
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Rai D, Song Y, Hua S, Stecker K, Monster JL, Yin V, Stucchi R, Xu Y, Zhang Y, Chen F, Katrukha EA, Altelaar M, Heck AJR, Wieczorek M, Jiang K, and Akhmanova A
- Subjects
- Microtubules metabolism, Microtubule-Organizing Center metabolism, Cytoskeleton metabolism, Tubulin metabolism, Microtubule-Associated Proteins genetics, Microtubule-Associated Proteins metabolism
- Abstract
γ-Tubulin ring complex (γ-TuRC) is the major microtubule-nucleating factor. After nucleation, microtubules can be released from γ-TuRC and stabilized by other proteins, such as CAMSAPs, but the biochemical cross-talk between minus-end regulation pathways is poorly understood. Here we reconstituted this process in vitro using purified components. We found that all CAMSAPs could bind to the minus ends of γ-TuRC-attached microtubules. CAMSAP2 and CAMSAP3, which decorate and stabilize growing minus ends but not the minus-end tracking protein CAMSAP1, induced microtubule release from γ-TuRC. CDK5RAP2, a γ-TuRC-interactor, and CLASP2, a regulator of microtubule growth, strongly stimulated γ-TuRC-dependent microtubule nucleation, but only CDK5RAP2 suppressed CAMSAP binding to γ-TuRC-anchored minus ends and their release. CDK5RAP2 also improved selectivity of γ-tubulin-containing complexes for 13- rather than 14-protofilament microtubules in microtubule-capping assays. Knockout and overexpression experiments in cells showed that CDK5RAP2 inhibits the formation of CAMSAP2-bound microtubules detached from the microtubule-organizing centre. We conclude that CAMSAPs can release newly nucleated microtubules from γ-TuRC, whereas nucleation-promoting factors can differentially regulate this process., (© 2024. The Author(s).)
- Published
- 2024
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3. Lattice Light-Sheet Motor-PAINT: A Method to Map the Orientations of Microtubules in Complex Three-Dimensional Arrays.
- Author
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Iwanski MK, Katrukha EA, and Kapitein LC
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- Dyneins metabolism, Cytoskeleton metabolism, Cell Polarity, Kinesins metabolism, Microtubules metabolism
- Abstract
Microtubules play an essential role in many cellular functions, in part by serving as tracks for intracellular transport by kinesin and dynein. The ability of microtubules to fulfill this role fundamentally depends on the fact that they are polar, with motors moving along them toward either their plus or minus end. Given that the microtubule cytoskeleton adopts a variety of specialized architectures in different cell types, it is important to map precisely how microtubules are oriented and organized in these cells. To this end, motor-PAINT has been developed, but in its current implementation, it relies on total internal reflection fluorescence (TIRF) microscopy and is thus restricted to imaging microtubules in a thin section of the cell immediately adjacent to the coverslip. Here, we report a variant of motor-PAINT that uses lattice light-sheet microscopy to overcome this, allowing for the mapping of microtubule organization and orientation in three-dimensional samples. We describe the necessary steps to purify, label, use, and image kinesin motors for motor-PAINT and outline the analysis pipeline used to visualize the resulting data. The method described here can be used in the future to study the microtubule cytoskeleton in (thick) polarized cells such as intestinal epithelial cells., (© 2024. The Author(s).)
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- 2024
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4. Uptake, Transport, and Toxicity of Pristine and Weathered Micro- and Nanoplastics in Human Placenta Cells.
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Dusza HM, Katrukha EA, Nijmeijer SM, Akhmanova A, Vethaak AD, Walker DI, and Legler J
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- Cell Survival, Female, Humans, Placenta metabolism, Polyethylene metabolism, Polyethylene pharmacology, Pregnancy, Microplastics, Polystyrenes
- Abstract
Background: The first evidence of micro- and nanoplastic (MNP) exposure in the human placenta is emerging. However, the toxicokinetics and toxicity of MNPs in the placenta, specifically environmentally relevant particles, remain unclear., Objectives: We examined the transport, uptake, and toxicity of pristine and experimentally weathered MNPs in nonsyncytialized and syncytialized BeWo b30 choriocarcinoma cells., Methods: We performed untargeted chemical characterization of pristine and weathered MNPs using liquid chromatography high-resolution mass spectrometry to evaluate compositional differences following particle weathering. We investigated cellular internalization of pristine and weathered polystyrene (PS; 0.05 - 10 μ m ) and high-density polyethylene (HDPE; 0 - 80 μ m ) particles using high-resolution confocal imaging and three-dimensional rendering. We investigated the influence of particle coating with human plasma on the cellular transport of PS particles using a transwell setup and examined the influence of acute MNP exposure on cell viability, damage to the plasma membrane, and expression of genes involved in steroidogenesis., Results: Chemical characterization of MNPs showed a significantly higher number of unique features in pristine particles in comparison with weathered particles. Size-dependent placental uptake of pristine and weathered MNPs was observed in both placental cell types after 24 h exposure. Cellular transport was limited and size-dependent and was not influenced by particle coating with human plasma. None of the MNPs affected cell viability. Damage to the plasma membrane was observed only for 0.05 μ m PS particles in the nonsyncytialized cells at the highest concentration tested ( 100 μ g / mL ). Modest down-regulation of hsd17b1 was observed in syncytialized cells exposed to pristine MNPs., Discussion: Our results suggest that pristine and weathered MNPs are internalized and translocated in placental cells in vitro . Effects on gene expression observed upon pristine PS and HDPE particle exposure warrant further examination. More in-depth investigations are needed to better understand the potential health risks of MNP and chemicals associated with them under environmentally relevant exposure scenarios. https://doi.org/10.1289/EHP10873.
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- 2022
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5. Organization and dynamics of the cortical complexes controlling insulin secretion in β-cells.
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Noordstra I, van den Berg CM, Boot FWJ, Katrukha EA, Yu KL, Tas RP, Portegies S, Viergever BJ, de Graaff E, Hoogenraad CC, de Koning EJP, Carlotti F, Kapitein LC, and Akhmanova A
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- Cytoskeletal Proteins metabolism, Exocytosis, Glucose metabolism, Insulin metabolism, Insulin Secretion, Insulin-Secreting Cells metabolism
- Abstract
Insulin secretion in pancreatic β-cells is regulated by cortical complexes that are enriched at the sites of adhesion to extracellular matrix facing the vasculature. Many components of these complexes, including bassoon, RIM, ELKS and liprins, are shared with neuronal synapses. Here, we show that insulin secretion sites also contain the non-neuronal proteins LL5β (also known as PHLDB2) and KANK1, which, in migrating cells, organize exocytotic machinery in the vicinity of integrin-based adhesions. Depletion of LL5β or focal adhesion disassembly triggered by myosin II inhibition perturbed the clustering of secretory complexes and attenuated the first wave of insulin release. Although previous analyses in vitro and in neurons have suggested that secretory machinery might assemble through liquid-liquid phase separation, analysis of endogenously labeled ELKS in pancreatic islets indicated that its dynamics is inconsistent with such a scenario. Instead, fluorescence recovery after photobleaching and single-molecule imaging showed that ELKS turnover is driven by binding and unbinding to low-mobility scaffolds. Both the scaffold movements and ELKS exchange were stimulated by glucose treatment. Our findings help to explain how integrin-based adhesions control spatial organization of glucose-stimulated insulin release., Competing Interests: Competing interests The authors declare no competing or financial interests., (© 2022. Published by The Company of Biologists Ltd.)
- Published
- 2022
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6. Lattice defects induced by microtubule-stabilizing agents exert a long-range effect on microtubule growth by promoting catastrophes.
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Rai A, Liu T, Katrukha EA, Estévez-Gallego J, Manka SW, Paterson I, Díaz JF, Kapitein LC, Moores CA, and Akhmanova A
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- Biological Phenomena, Microtubule-Associated Proteins chemistry, Microtubule-Associated Proteins metabolism, Microtubules chemistry, Microtubules ultrastructure, Paclitaxel metabolism, Polymerization, Protein Binding, Tubulin chemistry, Tubulin metabolism, Tubulin Modulators chemistry, Microtubules metabolism, Tubulin Modulators metabolism
- Abstract
Microtubules are dynamic cytoskeletal polymers that spontaneously switch between phases of growth and shrinkage. The probability of transitioning from growth to shrinkage, termed catastrophe, increases with microtubule age, but the underlying mechanisms are poorly understood. Here, we set out to test whether microtubule lattice defects formed during polymerization can affect growth at the plus end. To generate microtubules with lattice defects, we used microtubule-stabilizing agents that promote formation of polymers with different protofilament numbers. By employing different agents during nucleation of stable microtubule seeds and the subsequent polymerization phase, we could reproducibly induce switches in protofilament number and induce stable lattice defects. Such drug-induced defects led to frequent catastrophes, which were not observed when microtubules were grown in the same conditions but without a protofilament number mismatch. Microtubule severing at the site of the defect was sufficient to suppress catastrophes. We conclude that structural defects within the microtubule lattice can exert effects that can propagate over long distances and affect the dynamic state of the microtubule end., Competing Interests: The authors declare no competing interest., (Copyright © 2021 the Author(s). Published by PNAS.)
- Published
- 2021
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7. Direct observation of aggregate-triggered selective autophagy in human cells.
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Janssen AFJ, Korsten G, Nijenhuis W, Katrukha EA, and Kapitein LC
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- Autophagy, Homeostasis, Humans, Proteins, Autophagosomes, Macroautophagy
- Abstract
Degradation of aggregates by selective autophagy is important as damaged proteins may impose a threat to cellular homeostasis. Although the core components of the autophagy machinery are well characterized, the spatiotemporal regulation of many selective autophagy processes, including aggrephagy, remains largely unexplored. Furthermore, because most live-cell imaging studies have so far focused on starvation-induced autophagy, little is known about the dynamics of aggrephagy. Here, we describe the development and application of the mKeima-PIM assay, which enables live-cell observation of autophagic turnover and degradation of inducible protein aggregates in conjunction with key autophagy players. This allowed us to quantify the relative timing and duration of different steps of aggrephagy in human cells and revealed the short-lived nature of the autophagosome. The assay furthermore showed the spatial distribution of omegasome formation, highlighting that autophagy initiation is directly instructed by the cargo. Moreover, we found that nascent autophagosomes mostly remain immobile until acidification occurs. Thus, our assay provides new insights into the spatiotemporal regulation and dynamics of aggrephagy. This article has an associated First Person interview with the first author of the paper., Competing Interests: Competing interests The authors declare no competing or financial interests., (© 2021. Published by The Company of Biologists Ltd.)
- Published
- 2021
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8. Quantitative mapping of dense microtubule arrays in mammalian neurons.
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Katrukha EA, Jurriens D, Salas Pastene DM, and Kapitein LC
- Subjects
- Acetylation, Animals, Developmental Biology, Female, Male, Neurons cytology, Protein Processing, Post-Translational, Rats, Hippocampus metabolism, Kinesins metabolism, Microtubules metabolism, Neurons physiology, Tubulin metabolism
- Abstract
The neuronal microtubule cytoskeleton underlies the polarization and proper functioning of neurons, amongst others by providing tracks for motor proteins that drive intracellular transport. Different subsets of neuronal microtubules, varying in composition, stability, and motor preference, are known to exist, but the high density of microtubules has so far precluded mapping their relative abundance and three-dimensional organization. Here, we use different super-resolution techniques (STED, Expansion Microscopy) to explore the nanoscale organization of the neuronal microtubule network in rat hippocampal neurons. This revealed that in dendrites acetylated microtubules are enriched in the core of the dendritic shaft, while tyrosinated microtubules are enriched near the plasma membrane, thus forming a shell around the acetylated microtubules. Moreover, using a novel analysis pipeline we quantified the absolute number of acetylated and tyrosinated microtubules within dendrites and found that they account for 65-75% and ~20-30% of all microtubules, respectively, leaving only few microtubules that do not fall in either category. Because these different microtubule subtypes facilitate different motor proteins, these novel insights help to understand the spatial regulation of intracellular transport., Competing Interests: EK, DJ, DS, LK No competing interests declared, (© 2021, Katrukha et al.)
- Published
- 2021
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9. Chemical Imaging of Hierarchical Porosity Formation within a Zeolite Crystal Visualized by Small-Angle X-Ray Scattering and In-Situ Fluorescence Microscopy.
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Filez M, Vesely M, Garcia-Torregrosa I, Gambino M, Attila Ö, Meirer F, Katrukha EA, Roeffaers MBJ, Garrevoet J, Kapitein LC, and Weckhuysen BM
- Abstract
Introducing hierarchical porosity to zeolites is vital for providing molecular access to microporous domains. Yet, the dynamics of meso- and macropore formation has remained elusive and pore space ill-characterized by a lack of (in situ) microscopic tools sensitive to nanoporosity. Here, we probe hierarchical porosity formation within a zeolite ZSM-5 crystal in real-time by in situ fluorescence microscopy during desilication. In addition, we introduce small-angle X-ray scattering microscopy as novel characterization tool to map intracrystal meso- and macropore properties. It is shown that hierarchical porosity formation initiates at the crystal surface and propagates to the crystal core via a pore front with decreasing rate. Also, hierarchical porosity only establishes in specific (segments of) subunits which constitute ZSM-5. Such space-dependent meso- and macroporosity implies local discrepancies in diffusion, performance and deactivation behaviors even within a zeolite crystal., (© 2021 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.)
- Published
- 2021
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10. Centrosome-mediated microtubule remodeling during axon formation in human iPSC-derived neurons.
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Lindhout FW, Portegies S, Kooistra R, Herstel LJ, Stucchi R, Hummel JJA, Scheefhals N, Katrukha EA, Altelaar M, MacGillavry HD, Wierenga CJ, and Hoogenraad CC
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- Centrosome metabolism, Humans, Neurons metabolism, Axons metabolism, Induced Pluripotent Stem Cells metabolism, Microtubules metabolism
- Abstract
Axon formation critically relies on local microtubule remodeling and marks the first step in establishing neuronal polarity. However, the function of the microtubule-organizing centrosomes during the onset of axon formation is still under debate. Here, we demonstrate that centrosomes play an essential role in controlling axon formation in human-induced pluripotent stem cell (iPSC)-derived neurons. Depleting centrioles, the core components of centrosomes, in unpolarized human neuronal stem cells results in various axon developmental defects at later stages, including immature action potential firing, mislocalization of axonal microtubule-associated Trim46 proteins, suppressed expression of growth cone proteins, and affected growth cone morphologies. Live-cell imaging of microtubules reveals that centriole loss impairs axonal microtubule reorganization toward the unique parallel plus-end out microtubule bundles during early development. We propose that centrosomes mediate microtubule remodeling during early axon development in human iPSC-derived neurons, thereby laying the foundation for further axon development and function., (© 2021 The Authors. Published under the terms of the CC BY NC ND 4.0 license.)
- Published
- 2021
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11. Visualizing the ribonucleoprotein content of single bunyavirus virions reveals more efficient genome packaging in the arthropod host.
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Bermúdez-Méndez E, Katrukha EA, Spruit CM, Kortekaas J, and Wichgers Schreur PJ
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- Animals, Chlorocebus aethiops, Fluorescent Antibody Technique, In Situ Hybridization, Fluorescence, Orthobunyavirus metabolism, Orthobunyavirus pathogenicity, Ribonucleoproteins metabolism, Rift Valley fever virus genetics, Rift Valley fever virus metabolism, Rift Valley fever virus pathogenicity, Vero Cells, Viral Proteins metabolism, Virion genetics, Insecta virology, Orthobunyavirus genetics, Ribonucleoproteins genetics, Viral Genome Packaging, Viral Proteins genetics, Virion metabolism
- Abstract
Bunyaviruses have a genome that is divided over multiple segments. Genome segmentation complicates the generation of progeny virus, since each newly formed virus particle should preferably contain a full set of genome segments in order to disseminate efficiently within and between hosts. Here, we combine immunofluorescence and fluorescence in situ hybridization techniques to simultaneously visualize bunyavirus progeny virions and their genomic content at single-molecule resolution in the context of singly infected cells. Using Rift Valley fever virus and Schmallenberg virus as prototype tri-segmented bunyaviruses, we show that bunyavirus genome packaging is influenced by the intracellular viral genome content of individual cells, which results in greatly variable packaging efficiencies within a cell population. We further show that bunyavirus genome packaging is more efficient in insect cells compared to mammalian cells and provide new insights on the possibility that incomplete particles may contribute to bunyavirus spread as well.
- Published
- 2021
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12. Mapping the neuronal cytoskeleton using expansion microscopy.
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Jurriens D, van Batenburg V, Katrukha EA, and Kapitein LC
- Subjects
- Microscopy, Fluorescence, Neurons, Cytoskeleton, Microtubules
- Abstract
Expansion microscopy (ExM) is a recently introduced technique that enables high-resolution imaging with conventional microscopes by using physical expansion of samples. While this technique does not require a complicated microscope setup (like in STED or STORM microscopy), sample preparation and handling require additional attention. Here we describe a workflow for imaging of the neuronal microtubule network with minimal artifacts and sample perturbations. We demonstrate that the use of custom-printed mounting chambers simplifies sample handling and facilitates stable imaging of the sample. In addition, refractive index matching between the sample and the objective greatly improves signal retention deeper in thick samples. To accurately determine the precise expansion factor and determine sample distortion, we describe how samples can be compared using STED and ExM. Together, these procedures enabled us to better resolve different microtubule subsets in neuronal soma and dendrites., (© 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
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13. Concerted action of kinesins KIF5B and KIF13B promotes efficient secretory vesicle transport to microtubule plus ends.
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Serra-Marques A, Martin M, Katrukha EA, Grigoriev I, Peeters CA, Liu Q, Hooikaas PJ, Yao Y, Solianova V, Smal I, Pedersen LB, Meijering E, Kapitein LC, and Akhmanova A
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- HeLa Cells, Humans, Kinesins genetics, Microtubules, Protein Transport, Transport Vesicles, rab GTP-Binding Proteins genetics, Kinesins metabolism, rab GTP-Binding Proteins metabolism
- Abstract
Intracellular transport relies on multiple kinesins, but it is poorly understood which kinesins are present on particular cargos, what their contributions are and whether they act simultaneously on the same cargo. Here, we show that Rab6-positive secretory vesicles are transported from the Golgi apparatus to the cell periphery by kinesin-1 KIF5B and kinesin-3 KIF13B, which determine the location of secretion events. KIF5B plays a dominant role, whereas KIF13B helps Rab6 vesicles to reach freshly polymerized microtubule ends, to which KIF5B binds poorly, likely because its cofactors, MAP7-family proteins, are slow in populating these ends. Sub-pixel localization demonstrated that during microtubule plus-end directed transport, both kinesins localize to the vesicle front and can be engaged on the same vesicle. When vesicles reverse direction, KIF13B relocates to the middle of the vesicle, while KIF5B shifts to the back, suggesting that KIF5B but not KIF13B undergoes a tug-of-war with a minus-end directed motor., Competing Interests: AS, MM, EK, IG, CP, QL, PH, YY, VS, IS, EM, LK No competing interests declared, LP Reviewing editor, eLife, AA Deputy editor, eLife, (© 2020, Serra-Marques et al.)
- Published
- 2020
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14. Mechanisms of Motor-Independent Membrane Remodeling Driven by Dynamic Microtubules.
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Rodríguez-García R, Volkov VA, Chen CY, Katrukha EA, Olieric N, Aher A, Grigoriev I, López MP, Steinmetz MO, Kapitein LC, Koenderink G, Dogterom M, and Akhmanova A
- Subjects
- Kinesins metabolism, Microtubules metabolism, Endoplasmic Reticulum physiology, Escherichia coli physiology, Escherichia coli Proteins metabolism, Membrane Proteins metabolism, Microtubule-Associated Proteins metabolism, Microtubules physiology
- Abstract
Microtubule-dependent organization of membranous organelles occurs through motor-based pulling and by coupling microtubule dynamics to membrane remodeling. For example, tubules of endoplasmic reticulum (ER) can be extended by kinesin- and dynein-mediated transport and through the association with the tips of dynamic microtubules. The binding between ER and growing microtubule plus ends requires End Binding (EB) proteins and the transmembrane protein STIM1, which form a tip-attachment complex (TAC), but it is unknown whether these proteins are sufficient for membrane remodeling. Furthermore, EBs and their partners undergo rapid turnover at microtubule ends, and it is unclear how highly transient protein-protein interactions can induce load-bearing processive motion. Here, we reconstituted membrane tubulation in a minimal system with giant unilamellar vesicles, dynamic microtubules, an EB protein, and a membrane-bound protein that can interact with EBs and microtubules. We showed that these components are sufficient to drive membrane remodeling by three mechanisms: membrane tubulation induced by growing microtubule ends, motor-independent membrane sliding along microtubule shafts, and membrane pulling by shrinking microtubules. Experiments and modeling demonstrated that the first two mechanisms can be explained by adhesion-driven biased membrane spreading on microtubules. Optical trapping revealed that growing and shrinking microtubule ends can exert forces of ∼0.5 and ∼5 pN, respectively, through attached proteins. Rapidly exchanging molecules that connect membranes to dynamic microtubules can thus bear a sufficient load to induce membrane deformation and motility. Furthermore, combining TAC components and a membrane-attached kinesin in the same in vitro assays demonstrated that they can cooperate in promoting membrane tubule extension., Competing Interests: Declaration of Interests The authors declare no competing interests., (Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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15. Taxanes convert regions of perturbed microtubule growth into rescue sites.
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Rai A, Liu T, Glauser S, Katrukha EA, Estévez-Gallego J, Rodríguez-García R, Fang WS, Díaz JF, Steinmetz MO, Altmann KH, Kapitein LC, Moores CA, and Akhmanova A
- Subjects
- HeLa Cells, Humans, Kinetics, Tubulin metabolism, Microtubules drug effects, Microtubules metabolism, Taxoids pharmacology
- Abstract
Microtubules are polymers of tubulin dimers, and conformational transitions in the microtubule lattice drive microtubule dynamic instability and affect various aspects of microtubule function. The exact nature of these transitions and their modulation by anticancer drugs such as Taxol and epothilone, which can stabilize microtubules but also perturb their growth, are poorly understood. Here, we directly visualize the action of fluorescent Taxol and epothilone derivatives and show that microtubules can transition to a state that triggers cooperative drug binding to form regions with altered lattice conformation. Such regions emerge at growing microtubule ends that are in a pre-catastrophe state, and inhibit microtubule growth and shortening. Electron microscopy and in vitro dynamics data indicate that taxane accumulation zones represent incomplete tubes that can persist, incorporate tubulin dimers and repeatedly induce microtubule rescues. Thus, taxanes modulate the material properties of microtubules by converting destabilized growing microtubule ends into regions resistant to depolymerization.
- Published
- 2020
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16. Correction to: Imaging of Tumor Spheroids, Dual-Isotope SPECT, and Autoradiographic Analysis to Assess the Tumor Uptake and Distribution of Different Nanobodies.
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Beltrán Hernández I, Rompen R, Rossin R, Xenaki KT, Katrukha EA, Nicolay K, Henegouwen PVBE, Grüll H, and Oliveira S
- Abstract
This article was corrected/updated to include the complete graphic legend of Fig. 3.
- Published
- 2020
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17. Comparing strategies for deep astigmatism-based single-molecule localization microscopy.
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Siemons M, Cloin BMC, Salas DM, Nijenhuis W, Katrukha EA, and Kapitein LC
- Abstract
Single-molecule localization microscopy (SMLM) enables fluorescent microscopy with nanometric resolution. While localizing molecules close to the coverslip is relatively straightforward using high numerical aperture (NA) oil immersion (OI) objectives, optical aberrations impede SMLM deeper in watery samples. Adaptive optics (AO) with a deformable mirror (DM) can be used to correct such aberrations and to induce precise levels of astigmatism to encode the z- position of molecules. Alternatively, the use of water immersion (WI) objectives might be sufficient to limit the most dominant aberrations. Here we compare SMLM at various depths using either WI or OI with or without AO. In addition, we compare the performance of a cylindrical lens and a DM for astigmatism-based z- encoding. We find that OI combined with adaptive optics improves localization precision beyond the performance of WI-based imaging and enables deep (>10 µm) 3D localization., Competing Interests: The authors declare that there are no conflicts of interest related to this article., (© 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.)
- Published
- 2020
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18. Imaging of Tumor Spheroids, Dual-Isotope SPECT, and Autoradiographic Analysis to Assess the Tumor Uptake and Distribution of Different Nanobodies.
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Beltrán Hernández I, Rompen R, Rossin R, Xenaki KT, Katrukha EA, Nicolay K, van Bergen En Henegouwen P, Grüll H, and Oliveira S
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- Animals, Carbocyanines chemistry, Cell Line, Tumor, Female, Mice, Inbred BALB C, Mice, Nude, Neoplasms pathology, Signal Processing, Computer-Assisted, Spheroids, Cellular metabolism, Tissue Distribution, Autoradiography, Neoplasms diagnostic imaging, Radioisotopes metabolism, Single-Domain Antibodies metabolism, Spheroids, Cellular pathology, Tomography, Emission-Computed, Single-Photon
- Abstract
Purpose: Recent studies have shown rapid accumulation of nanobodies (NBs) in tumors and fast clearance of the unbound fraction, making NBs exceptional tracers for cancer imaging. In this study, we investigate the combination of in vitro imaging of tumor spheroids, in vivo dual-isotope single-photon emission computed tomography (SPECT), and ex vivo autoradiographic analysis of tumors to efficiently, and with few mice, assess the tumor uptake and distribution of different NBs., Procedures: The irrelevant NB R2 (16 kDa) and the EGFR-targeted NBs 7D12 (16 kDa) and 7D12-R2 (32 kDa) were investigated. Confocal microscopy was used to study the penetration of the NBs into A431 tumor spheroids over time, using the anti-EGFR monoclonal antibody (mAb) cetuximab (150 kDa) as a reference. Dual-isotope [
111 In]DOTA-NB/[177 Lu]DOTA-NB SPECT was used for longitudinal imaging of multiple tracers in the same animal bearing A431 tumor xenografts. Tumor sections were analyzed using autoradiography., Results: No binding of the irrelevant NB was observed in spheroids, whereas for the specific tracers an increase in the spheroid's covered area was observed over time. The NB 7D12 saturated the spheroid earlier than the larger, 7D12-R2. Even slower penetration was observed for the large mAb. In vivo, the tumor uptake of 7D12 was 19-fold higher than R2 after co-injection in the same animal, and 2.5-fold higher than 7D12-R2 when co-injected. 7D12-R2 was mainly localized at the rim of tumors, while 7D12 was found to be more evenly distributed., Conclusions: This study demonstrates that the combination of imaging of tumor spheroids, dual-isotope SPECT, and autoradiography of tumors is effective in comparing tumor uptake and distribution of different NBs. Results were in agreement with published data, highlighting the value of monomeric NBs for tumor imaging, and re-enforcing the value of these techniques to accurately assess the most optimal format for tumor imaging. This combination of techniques requires a lower number of animals to obtain significant data and can accelerate the design of novel tracers.- Published
- 2019
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19. Feedback-Driven Assembly of the Axon Initial Segment.
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Fréal A, Rai D, Tas RP, Pan X, Katrukha EA, van de Willige D, Stucchi R, Aher A, Yang C, Altelaar AFM, Vocking K, Post JA, Harterink M, Kapitein LC, Akhmanova A, and Hoogenraad CC
- Subjects
- Animals, Axon Initial Segment ultrastructure, Axonal Transport, COS Cells, Cell Line, Tumor, Chlorocebus aethiops, Cytoskeleton, Endocytosis, Feedback, Physiological, HEK293 Cells, Hippocampus cytology, Humans, Microtubules ultrastructure, Neurons ultrastructure, Rats, Tripartite Motif Proteins metabolism, Ankyrins metabolism, Axon Initial Segment metabolism, Cell Adhesion Molecules metabolism, Microtubule-Associated Proteins metabolism, Microtubules metabolism, Nerve Growth Factors metabolism, Neurons metabolism
- Abstract
The axon initial segment (AIS) is a unique neuronal compartment that plays a crucial role in the generation of action potential and neuronal polarity. The assembly of the AIS requires membrane, scaffolding, and cytoskeletal proteins, including Ankyrin-G and TRIM46. How these components cooperate in AIS formation is currently poorly understood. Here, we show that Ankyrin-G acts as a scaffold interacting with End-Binding (EB) proteins and membrane proteins such as Neurofascin-186 to recruit TRIM46-positive microtubules to the plasma membrane. Using in vitro reconstitution and cellular assays, we demonstrate that TRIM46 forms parallel microtubule bundles and stabilizes them by acting as a rescue factor. TRIM46-labeled microtubules drive retrograde transport of Neurofascin-186 to the proximal axon, where Ankyrin-G prevents its endocytosis, resulting in stable accumulation of Neurofascin-186 at the AIS. Neurofascin-186 enrichment in turn reinforces membrane anchoring of Ankyrin-G and subsequent recruitment of TRIM46-decorated microtubules. Our study reveals feedback-based mechanisms driving AIS assembly., (Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
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20. VAP-SCRN1 interaction regulates dynamic endoplasmic reticulum remodeling and presynaptic function.
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Lindhout FW, Cao Y, Kevenaar JT, Bodzęta A, Stucchi R, Boumpoutsari MM, Katrukha EA, Altelaar M, MacGillavry HD, and Hoogenraad CC
- Subjects
- Animals, Animals, Newborn, Biological Transport, Cell Membrane metabolism, Female, HEK293 Cells, Humans, Protein Binding, Protein Interaction Domains and Motifs, Rats, Synaptic Vesicles physiology, Calcium metabolism, Endoplasmic Reticulum metabolism, Membrane Proteins metabolism, Nerve Tissue Proteins metabolism, Neurons metabolism, Presynaptic Terminals physiology
- Abstract
In neurons, the continuous and dynamic endoplasmic reticulum (ER) network extends throughout the axon, and its dysfunction causes various axonopathies. However, it remains largely unknown how ER integrity and remodeling modulate presynaptic function in mammalian neurons. Here, we demonstrated that ER membrane receptors VAPA and VAPB are involved in modulating the synaptic vesicle (SV) cycle. VAP interacts with secernin-1 (SCRN1) at the ER membrane via a single FFAT-like motif. Similar to VAP, loss of SCRN1 or SCRN1-VAP interactions resulted in impaired SV cycling. Consistently, SCRN1 or VAP depletion was accompanied by decreased action potential-evoked Ca
2+ responses. Additionally, we found that VAP-SCRN1 interactions play an important role in maintaining ER continuity and dynamics, as well as presynaptic Ca2+ homeostasis. Based on these findings, we propose a model where the ER-localized VAP-SCRN1 interactions provide a novel control mechanism to tune ER remodeling and thereby modulate Ca2+ dynamics and SV cycling at presynaptic sites. These data provide new insights into the molecular mechanisms controlling ER structure and dynamics, and highlight the relevance of ER function for SV cycling., (© 2019 The Authors. Published under the terms of the CC BY 4.0 license.)- Published
- 2019
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21. MAP7 family proteins regulate kinesin-1 recruitment and activation.
- Author
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Hooikaas PJ, Martin M, Mühlethaler T, Kuijntjes GJ, Peeters CAE, Katrukha EA, Ferrari L, Stucchi R, Verhagen DGF, van Riel WE, Grigoriev I, Altelaar AFM, Hoogenraad CC, Rüdiger SGD, Steinmetz MO, Kapitein LC, and Akhmanova A
- Subjects
- Animals, Benzamides pharmacology, COS Cells, Chlorocebus aethiops, Diketopiperazines pharmacology, Enzyme Activation, HEK293 Cells, HeLa Cells, Humans, Kinesins genetics, Microtubule-Associated Proteins genetics, Microtubules drug effects, Microtubules genetics, Mitochondria genetics, Protein Binding, Protein Interaction Domains and Motifs, Protein Transport, Kinesins metabolism, Microtubule-Associated Proteins metabolism, Microtubules enzymology, Mitochondria enzymology
- Abstract
Kinesin-1 is responsible for microtubule-based transport of numerous cellular cargoes. Here, we explored the regulation of kinesin-1 by MAP7 proteins. We found that all four mammalian MAP7 family members bind to kinesin-1. In HeLa cells, MAP7, MAP7D1, and MAP7D3 act redundantly to enable kinesin-1-dependent transport and microtubule recruitment of the truncated kinesin-1 KIF5B-560, which contains the stalk but not the cargo-binding and autoregulatory regions. In vitro, purified MAP7 and MAP7D3 increase microtubule landing rate and processivity of kinesin-1 through transient association with the motor. MAP7 proteins promote binding of kinesin-1 to microtubules both directly, through the N-terminal microtubule-binding domain and unstructured linker region, and indirectly, through an allosteric effect exerted by the kinesin-binding C-terminal domain. Compared with MAP7, MAP7D3 has a higher affinity for kinesin-1 and a lower affinity for microtubules and, unlike MAP7, can be cotransported with the motor. We propose that MAP7 proteins are microtubule-tethered kinesin-1 activators, with which the motor transiently interacts as it moves along microtubules., (© 2019 Hooikaas et al.)
- Published
- 2019
- Full Text
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22. Guided by Light: Optical Control of Microtubule Gliding Assays.
- Author
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Tas RP, Chen CY, Katrukha EA, Vleugel M, Kok M, Dogterom M, Akhmanova A, and Kapitein LC
- Abstract
Force generation by molecular motors drives biological processes such as asymmetric cell division and cell migration. Microtubule gliding assays in which surface-immobilized motor proteins drive microtubule propulsion are widely used to study basic motor properties as well as the collective behavior of active self-organized systems. Additionally, these assays can be employed for nanotechnological applications such as analyte detection, biocomputation, and mechanical sensing. While such assays allow tight control over the experimental conditions, spatiotemporal control of force generation has remained underdeveloped. Here we use light-inducible protein-protein interactions to recruit molecular motors to the surface to control microtubule gliding activity in vitro. We show that using these light-inducible interactions, proteins can be recruited to the surface in patterns, reaching a ∼5-fold enrichment within 6 s upon illumination. Subsequently, proteins are released with a half-life of 13 s when the illumination is stopped. We furthermore demonstrate that light-controlled kinesin recruitment results in reversible activation of microtubule gliding along the surface, enabling efficient control over local microtubule motility. Our approach to locally control force generation offers a way to study the effects of nonuniform pulling forces on different microtubule arrays and also provides novel strategies for local control in nanotechnological applications.
- Published
- 2018
- Full Text
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23. Probing aggrephagy using chemically-induced protein aggregates.
- Author
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Janssen AFJ, Katrukha EA, van Straaten W, Verlhac P, Reggiori F, and Kapitein LC
- Subjects
- Autophagy genetics, Flow Cytometry, Fluorescence Recovery After Photobleaching, HEK293 Cells, HeLa Cells, Humans, Lysosomes metabolism, Microscopy, Fluorescence, Phagosomes genetics, Phagosomes metabolism, Phagosomes physiology, Protein Aggregates genetics, Ubiquitin metabolism, Autophagy physiology, Protein Aggregates physiology
- Abstract
Selective types of autophagy mediate the clearance of specific cellular components and are essential to maintain cellular homeostasis. However, tools to directly induce and monitor such pathways are limited. Here we introduce the PIM (particles induced by multimerization) assay as a tool for the study of aggrephagy, the autophagic clearance of aggregates. The assay uses an inducible multimerization module to assemble protein clusters, which upon induction recruit ubiquitin, p62, and LC3 before being delivered to lysosomes. Moreover, use of a dual fluorescent tag allows for the direct observation of cluster delivery to the lysosome. Using flow cytometry and fluorescence microscopy, we show that delivery to the lysosome is partially dependent on p62 and ATG7. This assay will help in elucidating the spatiotemporal dynamics and control mechanisms underlying aggregate clearance by the autophagy-lysosomal system.
- Published
- 2018
- Full Text
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24. Activity-Dependent Actin Remodeling at the Base of Dendritic Spines Promotes Microtubule Entry.
- Author
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Schätzle P, Esteves da Silva M, Tas RP, Katrukha EA, Hu HY, Wierenga CJ, Kapitein LC, and Hoogenraad CC
- Subjects
- Animals, Female, Male, Mice, Inbred C57BL, Rats, Rats, Wistar, Actins metabolism, Dendritic Spines metabolism, Hippocampus physiology, Microtubules metabolism, Neurons physiology
- Abstract
In neurons, microtubules form dense bundles and run along the length of axons and dendrites. Occasionally, dendritic microtubules can grow from the shaft directly into dendritic spines. Microtubules target dendritic spines that are undergoing activity-dependent changes, but the mechanism by which microtubules enter spines has remained poorly understood. Using live-cell imaging, high-resolution microscopy, and local glutamate uncaging, we show that local actin remodeling at the base of a spine promotes microtubule spine targeting. Microtubule spine entry is triggered by activation of N-Methyl-D-aspartic acid (NMDA) receptors and calcium influx and requires dynamic actin remodeling. Activity-dependent translocation of the actin remodeling protein cortactin out of the spine correlates with increased microtubule targeting at a single spine level. Our data show that the structural changes in the actin cytoskeleton at the base of the spine are directly involved in microtubule entry and emphasize the importance of actin-microtubule crosstalk in orchestrating synapse function and plasticity., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
- Full Text
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25. CLASP Suppresses Microtubule Catastrophes through a Single TOG Domain.
- Author
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Aher A, Kok M, Sharma A, Rai A, Olieric N, Rodriguez-Garcia R, Katrukha EA, Weinert T, Olieric V, Kapitein LC, Steinmetz MO, Dogterom M, and Akhmanova A
- Subjects
- Animals, Binding Sites, COS Cells, Cell Line, Chlorocebus aethiops, HEK293 Cells, Humans, Protein Binding, Protein Domains physiology, Tubulin metabolism, Cell Proliferation physiology, Microtubule-Associated Proteins genetics, Microtubules metabolism, Spindle Apparatus metabolism
- Abstract
The dynamic instability of microtubules plays a key role in controlling their organization and function, but the cellular mechanisms regulating this process are poorly understood. Here, we show that cytoplasmic linker-associated proteins (CLASPs) suppress transitions from microtubule growth to shortening, termed catastrophes, including those induced by microtubule-destabilizing agents and physical barriers. Mammalian CLASPs encompass three TOG-like domains, TOG1, TOG2, and TOG3, none of which bind to free tubulin. TOG2 is essential for catastrophe suppression, whereas TOG3 mildly enhances rescues but cannot suppress catastrophes. These functions are inhibited by the C-terminal domain of CLASP2, while the TOG1 domain can release this auto-inhibition. TOG2 fused to a positively charged microtubule-binding peptide autonomously accumulates at growing but not shrinking ends, suppresses catastrophes, and stimulates rescues. CLASPs suppress catastrophes by stabilizing growing microtubule ends, including incomplete ones, preventing their depolymerization and promoting their recovery into complete tubes. TOG2 domain is the key determinant of these activities., (Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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- View/download PDF
26. Control of endothelial cell polarity and sprouting angiogenesis by non-centrosomal microtubules.
- Author
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Martin M, Veloso A, Wu J, Katrukha EA, and Akhmanova A
- Subjects
- Animals, Animals, Genetically Modified, Cell Movement physiology, Cells, Cultured, Centrosome metabolism, Cytoskeletal Proteins genetics, Cytoskeletal Proteins metabolism, Endothelial Cells cytology, Endothelial Cells metabolism, Golgi Apparatus metabolism, Humans, Microtubule-Associated Proteins genetics, Microtubule-Associated Proteins metabolism, RNA Interference, Zebrafish, Cell Polarity physiology, Endothelial Cells physiology, Microtubules metabolism, Neovascularization, Physiologic physiology
- Abstract
Microtubules control different aspects of cell polarization. In cells with a radial microtubule system, a pivotal role in setting up asymmetry is attributed to the relative positioning of the centrosome and the nucleus. Here, we show that centrosome loss had no effect on the ability of endothelial cells to polarize and move in 2D and 3D environments. In contrast, non-centrosomal microtubules stabilized by the microtubule minus-end-binding protein CAMSAP2 were required for directional migration on 2D substrates and for the establishment of polarized cell morphology in soft 3D matrices. CAMSAP2 was also important for persistent endothelial cell sprouting during in vivo zebrafish vessel development. In the absence of CAMSAP2, cell polarization in 3D could be partly rescued by centrosome depletion, indicating that in these conditions the centrosome inhibited cell polarity. We propose that CAMSAP2-protected non-centrosomal microtubules are needed for establishing cell asymmetry by enabling microtubule enrichment in a single-cell protrusion., Competing Interests: MM, AV, JW, EK No competing interests declared, AA Senior editor, eLife, (© 2018, Martin et al.)
- Published
- 2018
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27. Two populations of cytoplasmic dynein contribute to spindle positioning in C. elegans embryos.
- Author
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Schmidt R, Fielmich LE, Grigoriev I, Katrukha EA, Akhmanova A, and van den Heuvel S
- Subjects
- Animals, Animals, Genetically Modified, Caenorhabditis elegans embryology, Caenorhabditis elegans genetics, Caenorhabditis elegans Proteins genetics, Cell Cycle Proteins genetics, Cell Cycle Proteins metabolism, Cytoplasmic Dyneins genetics, Genotype, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Luminescent Proteins genetics, Luminescent Proteins metabolism, Microscopy, Fluorescence, Microscopy, Video, Microtubules genetics, Microtubules metabolism, Mutation, Phenotype, Recombinant Fusion Proteins metabolism, Signal Transduction, Spindle Apparatus genetics, Time Factors, Red Fluorescent Protein, Caenorhabditis elegans metabolism, Caenorhabditis elegans Proteins metabolism, Cytoplasm metabolism, Cytoplasmic Dyneins metabolism, Spindle Apparatus metabolism
- Abstract
The position of the mitotic spindle is tightly controlled in animal cells as it determines the plane and orientation of cell division. Contacts between cytoplasmic dynein and astral microtubules (MTs) at the cell cortex generate pulling forces that position the spindle. An evolutionarily conserved Gα-GPR-1/2
Pins/LGN -LIN-5Mud/NuMA cortical complex interacts with dynein and is required for pulling force generation, but the dynamics of this process remain unclear. In this study, by fluorescently labeling endogenous proteins in Caenorhabditis elegans embryos, we show that dynein exists in two distinct cortical populations. One population directly depends on LIN-5, whereas the other is concentrated at MT plus ends and depends on end-binding (EB) proteins. Knockout mutants lacking all EBs are viable and fertile and display normal pulling forces and spindle positioning. However, EB protein-dependent dynein plus end tracking was found to contribute to force generation in embryos with a partially perturbed dynein function, indicating the existence of two mechanisms that together create a highly robust force-generating system., (© 2017 Schmidt et al.)- Published
- 2017
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28. MAP2 Defines a Pre-axonal Filtering Zone to Regulate KIF1- versus KIF5-Dependent Cargo Transport in Sensory Neurons.
- Author
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Gumy LF, Katrukha EA, Grigoriev I, Jaarsma D, Kapitein LC, Akhmanova A, and Hoogenraad CC
- Subjects
- Animals, Cell Line, Cells, Cultured, Dendrites metabolism, Microtubules metabolism, Models, Biological, Rats, Axonal Transport physiology, Axons metabolism, Kinesins metabolism, Microtubule-Associated Proteins metabolism, Sensory Receptor Cells metabolism
- Abstract
Polarized cargo transport is essential for neuronal function. However, the minimal basic components required for selective cargo sorting and distribution in neurons remain elusive. We found that in sensory neurons the axon initial segment is largely absent and that microtubule-associated protein 2 (MAP2) defines the cargo-filtering zone in the proximal axon. Here, MAP2 directs axonal cargo entry by coordinating the activities of molecular motors. We show that distinct kinesins differentially regulate cargo velocity: kinesin-3 drives fast axonal cargo trafficking, while kinesin-1 slows down axonal cargo transport. MAP2 inhibits "slow" kinesin-1 motor activity and allows kinesin-3 to drive robust cargo transport from the soma into the axon. In the distal axon, the inhibitory action of MAP2 decreases, leading to regained kinesin-1 activity and vesicle distribution. We propose that selective axonal cargo trafficking requires the MAP2-defined pre-axonal filtering zone and the ability of cargos to switch between distinct kinesin motor activities., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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29. Probing cytoskeletal modulation of passive and active intracellular dynamics using nanobody-functionalized quantum dots.
- Author
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Katrukha EA, Mikhaylova M, van Brakel HX, van Bergen En Henegouwen PM, Akhmanova A, Hoogenraad CC, and Kapitein LC
- Subjects
- Animals, Biological Transport, Biological Transport, Active, COS Cells, Chlorocebus aethiops, Cytoskeleton metabolism, Quantum Dots, Actin Cytoskeleton metabolism, Actins metabolism, Cytoplasm metabolism, Kinesins metabolism, Microtubules metabolism, Myosins metabolism
- Abstract
The cytoplasm is a highly complex and heterogeneous medium that is structured by the cytoskeleton. How local transport depends on the heterogeneous organization and dynamics of F-actin and microtubules is poorly understood. Here we use a novel delivery and functionalization strategy to utilize quantum dots (QDs) as probes for active and passive intracellular transport. Rapid imaging of non-functionalized QDs reveals two populations with a 100-fold difference in diffusion constant, with the faster fraction increasing upon actin depolymerization. When nanobody-functionalized QDs are targeted to different kinesin motor proteins, their trajectories do not display strong actin-induced transverse displacements, as suggested previously. Only kinesin-1 displays subtle directional fluctuations, because the subset of microtubules used by this motor undergoes prominent undulations. Using actin-targeting agents reveals that F-actin suppresses most microtubule shape remodelling, rather than promoting it. These results demonstrate how the spatial heterogeneity of the cytoskeleton imposes large variations in non-equilibrium intracellular dynamics.
- Published
- 2017
- Full Text
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30. Kinesin-4 KIF21B is a potent microtubule pausing factor.
- Author
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van Riel WE, Rai A, Bianchi S, Katrukha EA, Liu Q, Heck AJ, Hoogenraad CC, Steinmetz MO, Kapitein LC, and Akhmanova A
- Subjects
- Animals, COS Cells, Chlorocebus aethiops, HEK293 Cells, Humans, Protein Binding, Protein Domains, Protein Interaction Mapping, Protein Multimerization, Kinesins metabolism, Microtubules metabolism
- Abstract
Microtubules are dynamic polymers that in cells can grow, shrink or pause, but the factors that promote pausing are poorly understood. Here, we show that the mammalian kinesin-4 KIF21B is a processive motor that can accumulate at microtubule plus ends and induce pausing. A few KIF21B molecules are sufficient to induce strong growth inhibition of a microtubule plus end in vitro. This property depends on non-motor microtubule-binding domains located in the stalk region and the C-terminal WD40 domain. The WD40-containing KIF21B tail displays preference for a GTP-type over a GDP-type microtubule lattice and contributes to the interaction of KIF21B with microtubule plus ends. KIF21B also contains a motor-inhibiting domain that does not fully block the interaction of the protein with microtubules, but rather enhances its pause-inducing activity by preventing KIF21B detachment from microtubule tips. Thus, KIF21B combines microtubule-binding and regulatory activities that together constitute an autonomous microtubule pausing factor.
- Published
- 2017
- Full Text
- View/download PDF
31. Mesenchymal Cell Invasion Requires Cooperative Regulation of Persistent Microtubule Growth by SLAIN2 and CLASP1.
- Author
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Bouchet BP, Noordstra I, van Amersfoort M, Katrukha EA, Ammon YC, Ter Hoeve ND, Hodgson L, Dogterom M, Derksen PWB, and Akhmanova A
- Subjects
- Animals, Cell Adhesion, Cell Line, Tumor, Cell Membrane metabolism, Collagen metabolism, Exocytosis, Female, Focal Adhesions metabolism, HEK293 Cells, Humans, Interphase, Mice, Models, Biological, Neoplasm Invasiveness, Polymerization, Pseudopodia metabolism, rho GTP-Binding Proteins metabolism, Mesoderm metabolism, Mesoderm pathology, Microtubule-Associated Proteins metabolism, Microtubules metabolism
- Abstract
Microtubules regulate signaling, trafficking, and cell mechanics, but the respective contribution of these functions to cell morphogenesis and migration in 3D matrices is unclear. Here, we report that the microtubule plus-end tracking protein (+TIP) SLAIN2, which suppresses catastrophes, is not required for 2D cell migration but is essential for mesenchymal cell invasion in 3D culture and in a mouse cancer model. We show that SLAIN2 inactivation does not affect Rho GTPase activity, trafficking, and focal adhesion formation. However, SLAIN2-dependent catastrophe inhibition determines microtubule resistance to compression and pseudopod elongation. Another +TIP, CLASP1, is also needed to form invasive pseudopods because it prevents catastrophes specifically at their tips. When microtubule growth persistence is reduced, inhibition of depolymerization is sufficient for pseudopod maintenance but not remodeling. We propose that catastrophe inhibition by SLAIN2 and CLASP1 supports mesenchymal cell shape in soft 3D matrices by enabling microtubules to perform a load-bearing function., Competing Interests: The authors declare no competing financial interests., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
32. EGFR Dynamics Change during Activation in Native Membranes as Revealed by NMR.
- Author
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Kaplan M, Narasimhan S, de Heus C, Mance D, van Doorn S, Houben K, Popov-Čeleketić D, Damman R, Katrukha EA, Jain P, Geerts WJC, Heck AJR, Folkers GE, Kapitein LC, Lemeer S, van Bergen En Henegouwen PMP, and Baldus M
- Subjects
- Cell Line, Tumor, Epidermal Growth Factor metabolism, ErbB Receptors isolation & purification, Humans, Intracellular Membranes chemistry, Nuclear Magnetic Resonance, Biomolecular, Protein Multimerization, Thermodynamics, Transport Vesicles chemistry, ErbB Receptors chemistry, ErbB Receptors metabolism
- Abstract
The epidermal growth factor receptor (EGFR) represents one of the most common target proteins in anti-cancer therapy. To directly examine the structural and dynamical properties of EGFR activation by the epidermal growth factor (EGF) in native membranes, we have developed a solid-state nuclear magnetic resonance (ssNMR)-based approach supported by dynamic nuclear polarization (DNP). In contrast to previous crystallographic results, our experiments show that the ligand-free state of the extracellular domain (ECD) is highly dynamic, while the intracellular kinase domain (KD) is rigid. Ligand binding restricts the overall and local motion of EGFR domains, including the ECD and the C-terminal region. We propose that the reduction in conformational entropy of the ECD by ligand binding favors the cooperative binding required for receptor dimerization, causing allosteric activation of the intracellular tyrosine kinase., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
33. Molecular Pathway of Microtubule Organization at the Golgi Apparatus.
- Author
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Wu J, de Heus C, Liu Q, Bouchet BP, Noordstra I, Jiang K, Hua S, Martin M, Yang C, Grigoriev I, Katrukha EA, Altelaar AFM, Hoogenraad CC, Qi RZ, Klumperman J, and Akhmanova A
- Subjects
- A Kinase Anchor Proteins metabolism, Cell Line, Cell Movement drug effects, Cell Polarity drug effects, Centrioles metabolism, Cytoskeletal Proteins metabolism, Golgi Apparatus drug effects, Humans, Imaging, Three-Dimensional, Intracellular Membranes metabolism, Microtubule-Associated Proteins metabolism, Microtubules drug effects, Protein Binding drug effects, Protein Stability drug effects, Pyrimidines pharmacology, Sulfones pharmacology, Tubulin metabolism, Golgi Apparatus metabolism, Microtubules metabolism, Signal Transduction drug effects
- Abstract
The Golgi apparatus controls the formation of non-centrosomal microtubule arrays important for Golgi organization, polarized transport, cell motility, and cell differentiation. Here, we show that CAMSAP2 stabilizes and attaches microtubule minus ends to the Golgi through a complex of AKAP450 and myomegalin. CLASPs stabilize CAMSAP2-decorated microtubules but are not required for their Golgi tethering. AKAP450 is also essential for Golgi microtubule nucleation, and myomegalin and CDK5RAP2 but not CAMSAP2 contribute to this function. In the absence of centrosomes, AKAP450- and CAMSAP2-dependent pathways of microtubule minus-end organization become dominant, and the presence of at least one of them is needed to maintain microtubule density. Strikingly, a compact Golgi can be assembled in the absence of both centrosomal and Golgi microtubules. However, CAMSAP2- and AKAP450-dependent Golgi microtubules facilitate Golgi reorientation and cell invasion in a 3D matrix. We propose that Golgi-anchored microtubules are important for polarized cell movement but not for coalescence of Golgi membranes., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
34. Structural basis for misregulation of kinesin KIF21A autoinhibition by CFEOM1 disease mutations.
- Author
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Bianchi S, van Riel WE, Kraatz SH, Olieric N, Frey D, Katrukha EA, Jaussi R, Missimer J, Grigoriev I, Olieric V, Benoit RM, Steinmetz MO, Akhmanova A, and Kammerer RA
- Subjects
- Animals, COS Cells, Cell Line, Chlorocebus aethiops, Crystallography, X-Ray, HEK293 Cells, Humans, Kinesins metabolism, Molecular Docking Simulation, Mutation genetics, Protein Binding genetics, Protein Folding, Eye Diseases, Hereditary genetics, Fibrosis genetics, Kinesins antagonists & inhibitors, Kinesins genetics, Ocular Motility Disorders genetics, Protein Domains genetics
- Abstract
Tight regulation of kinesin activity is crucial and malfunction is linked to neurological diseases. Point mutations in the KIF21A gene cause congenital fibrosis of the extraocular muscles type 1 (CFEOM1) by disrupting the autoinhibitory interaction between the motor domain and a regulatory region in the stalk. However, the molecular mechanism underlying the misregulation of KIF21A activity in CFEOM1 is not understood. Here, we show that the KIF21A regulatory domain containing all disease-associated substitutions in the stalk forms an intramolecular antiparallel coiled coil that inhibits the kinesin. CFEOM1 mutations lead to KIF21A hyperactivation by affecting either the structural integrity of the antiparallel coiled coil or the autoinhibitory binding interface, thereby reducing its affinity for the motor domain. Interaction of the KIF21A regulatory domain with the KIF21B motor domain and sequence similarities to KIF7 and KIF27 strongly suggest a conservation of this regulatory mechanism in other kinesin-4 family members.
- Published
- 2016
- Full Text
- View/download PDF
35. Termination of Protofilament Elongation by Eribulin Induces Lattice Defects that Promote Microtubule Catastrophes.
- Author
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Doodhi H, Prota AE, Rodríguez-García R, Xiao H, Custar DW, Bargsten K, Katrukha EA, Hilbert M, Hua S, Jiang K, Grigoriev I, Yang CH, Cox D, Horwitz SB, Kapitein LC, Akhmanova A, and Steinmetz MO
- Subjects
- Animals, Cattle, Crystallography, X-Ray, Microtubules drug effects, Antimitotic Agents pharmacology, Furans pharmacology, Ketones pharmacology, Microtubules metabolism, Tubulin metabolism
- Abstract
Microtubules are dynamic polymers built of tubulin dimers that attach in a head-to-tail fashion to form protofilaments, which further associate laterally to form a tube. Asynchronous elongation of individual protofilaments can potentially lead to an altered microtubule-end structure that promotes sudden depolymerization, termed catastrophe [1-4]. However, how the dynamics of individual protofilaments relates to overall growth persistence has remained unclear. Here, we used the microtubule targeting anti-cancer drug Eribulin [5-7] to explore the consequences of stalled protofilament elongation on microtubule growth. Using X-ray crystallography, we first revealed that Eribulin binds to a site on β-tubulin that is required for protofilament plus-end elongation. Based on the structural information, we engineered a fluorescent Eribulin molecule. We demonstrate that single Eribulin molecules specifically interact with microtubule plus ends and are sufficient to either trigger a catastrophe or induce slow and erratic microtubule growth in the presence of EB3. Interestingly, we found that Eribulin increases the frequency of EB3 comet "splitting," transient events where a slow and erratically progressing comet is followed by a faster comet. This observation possibly reflects the "healing" of a microtubule lattice. Because EB3 comet splitting was also observed in control microtubules in the absence of any drugs, we propose that Eribulin amplifies a natural pathway toward catastrophe by promoting the arrest of protofilament elongation., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
36. Centriolar CPAP/SAS-4 Imparts Slow Processive Microtubule Growth.
- Author
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Sharma A, Aher A, Dynes NJ, Frey D, Katrukha EA, Jaussi R, Grigoriev I, Croisier M, Kammerer RA, Akhmanova A, Gönczy P, and Steinmetz MO
- Subjects
- Amino Acid Sequence, Cell Line, Tumor, Centrioles ultrastructure, Crystallography, X-Ray, Humans, Microtubule-Associated Proteins chemistry, Microtubule-Associated Proteins genetics, Microtubules ultrastructure, Models, Molecular, Protein Binding, Protein Domains, Structure-Activity Relationship, Tubulin chemistry, Tubulin metabolism, Centrioles metabolism, Microtubule-Associated Proteins metabolism, Microtubules metabolism
- Abstract
Centrioles are fundamental and evolutionarily conserved microtubule-based organelles whose assembly is characterized by microtubule growth rates that are orders of magnitude slower than those of cytoplasmic microtubules. Several centriolar proteins can interact with tubulin or microtubules, but how they ensure the exceptionally slow growth of centriolar microtubules has remained mysterious. Here, we bring together crystallographic, biophysical, and reconstitution assays to demonstrate that the human centriolar protein CPAP (SAS-4 in worms and flies) binds and "caps" microtubule plus ends by associating with a site of β-tubulin engaged in longitudinal tubulin-tubulin interactions. Strikingly, we uncover that CPAP activity dampens microtubule growth and stabilizes microtubules by inhibiting catastrophes and promoting rescues. We further establish that the capping function of CPAP is important to limit growth of centriolar microtubules in cells. Our results suggest that CPAP acts as a molecular lid that ensures slow assembly of centriolar microtubules and, thereby, contributes to organelle length control., (Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
37. Studying neuronal microtubule organization and microtubule-associated proteins using single molecule localization microscopy.
- Author
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Chazeau A, Katrukha EA, Hoogenraad CC, and Kapitein LC
- Subjects
- Animals, Cell Culture Techniques, Cell Line, Tumor, Cells, Cultured, HeLa Cells, Hippocampus cytology, Humans, Lentivirus genetics, Microscopy, Fluorescence methods, Rats, Retinal Pigment Epithelium cytology, Retinal Pigment Epithelium metabolism, Staining and Labeling, Transfection, Axons metabolism, Cytoskeleton metabolism, Hippocampus metabolism, Microtubule-Associated Proteins metabolism, Microtubules metabolism
- Abstract
The formation and maintenance of highly polarized neurons critically depends on the proper organization of the microtubule (MT) cytoskeleton. In axons, MTs are uniformly oriented with their plus-end pointing outward whereas in mature dendrites MTs have mixed orientations. MT organization and dynamics can be regulated by MT-associated proteins (MAPs). Plus-end tracking proteins are specialized MAPs that decorate plus-ends of growing MTs and regulate neuronal polarity, neurite extension, and dendritic spine morphology. Conventional fluorescence microscopy enables observation of specific cellular components through molecule-specific labeling but provides limited resolution (∼250 nm). Therefore, electron microscopy has until now provided most of our knowledge about the precise MT organization in neurons. In the past decade, super-resolution fluorescence microscopy techniques have emerged that circumvent the diffraction limit of light and enable high-resolution reconstruction of the MT network combined with selective protein labeling. However, preserving MT ultrastructure, MAP binding, high labeling density, and antibody specificity after fixation protocols is still quite challenging. In this chapter, we provide an optimized protocol for two-color direct stochastic optical reconstruction microscopy imaging of neuronal MTs together with their growing plus-ends to probe MT architecture and polarity., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
38. TRIM46 Controls Neuronal Polarity and Axon Specification by Driving the Formation of Parallel Microtubule Arrays.
- Author
-
van Beuningen SFB, Will L, Harterink M, Chazeau A, van Battum EY, Frias CP, Franker MAM, Katrukha EA, Stucchi R, Vocking K, Antunes AT, Slenders L, Doulkeridou S, Sillevis Smitt P, Altelaar AFM, Post JA, Akhmanova A, Pasterkamp RJ, Kapitein LC, de Graaff E, and Hoogenraad CC
- Subjects
- Amino Acid Sequence, Animals, COS Cells, Cells, Cultured, Cerebral Cortex embryology, Cerebral Cortex physiology, Cerebral Cortex ultrastructure, Chlorocebus aethiops, Female, HEK293 Cells, HeLa Cells, Humans, Mice, Mice, Inbred C57BL, Molecular Sequence Data, Neurons physiology, Neurons ultrastructure, Pregnancy, Rats, Repressor Proteins physiology, Repressor Proteins ultrastructure, Axons physiology, Axons ultrastructure, Cell Polarity physiology, Microtubules physiology, Microtubules ultrastructure, Nerve Tissue Proteins physiology, Nerve Tissue Proteins ultrastructure
- Abstract
Axon formation, the initial step in establishing neuronal polarity, critically depends on local microtubule reorganization and is characterized by the formation of parallel microtubule bundles. How uniform microtubule polarity is achieved during axonal development remains an outstanding question. Here, we show that the tripartite motif containing (TRIM) protein TRIM46 plays an instructive role in the initial polarization of neuronal cells. TRIM46 is specifically localized to the newly specified axon and, at later stages, partly overlaps with the axon initial segment (AIS). TRIM46 specifically forms closely spaced parallel microtubule bundles oriented with their plus-end out. Without TRIM46, all neurites have a dendrite-like mixed microtubule organization resulting in Tau missorting and altered cargo trafficking. By forming uniform microtubule bundles in the axon, TRIM46 is required for neuronal polarity and axon specification in vitro and in vivo. Thus, TRIM46 defines a unique axonal cytoskeletal compartment for regulating microtubule organization during neuronal development., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
39. Resolving bundled microtubules using anti-tubulin nanobodies.
- Author
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Mikhaylova M, Cloin BM, Finan K, van den Berg R, Teeuw J, Kijanka MM, Sokolowski M, Katrukha EA, Maidorn M, Opazo F, Moutel S, Vantard M, Perez F, van Bergen en Henegouwen PM, Hoogenraad CC, Ewers H, and Kapitein LC
- Subjects
- Animals, Cell Line, Humans, Antibodies, Computer Simulation, Microscopy methods, Microtubules ultrastructure, Single-Domain Antibodies
- Abstract
Microtubules are hollow biopolymers of 25-nm diameter and are key constituents of the cytoskeleton. In neurons, microtubules are organized differently between axons and dendrites, but their precise organization in different compartments is not completely understood. Super-resolution microscopy techniques can detect specific structures at an increased resolution, but the narrow spacing between neuronal microtubules poses challenges because most existing labelling strategies increase the effective microtubule diameter by 20-40 nm and will thereby blend neighbouring microtubules into one structure. Here we develop single-chain antibody fragments (nanobodies) against tubulin to achieve super-resolution imaging of microtubules with a decreased apparent diameter. To test the resolving power of these novel probes, we generate microtubule bundles with a known spacing of 50-70 nm and successfully resolve individual microtubules. Individual bundled microtubules can also be resolved in different mammalian cells, including hippocampal neurons, allowing novel insights into fundamental mechanisms of microtubule organization in cell- and neurobiology.
- Published
- 2015
- Full Text
- View/download PDF
40. Microtubule minus-end binding protein CAMSAP2 controls axon specification and dendrite development.
- Author
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Yau KW, van Beuningen SF, Cunha-Ferreira I, Cloin BM, van Battum EY, Will L, Schätzle P, Tas RP, van Krugten J, Katrukha EA, Jiang K, Wulf PS, Mikhaylova M, Harterink M, Pasterkamp RJ, Akhmanova A, Kapitein LC, and Hoogenraad CC
- Subjects
- Animals, Axons ultrastructure, Dendrites ultrastructure, Hippocampus embryology, Hippocampus metabolism, Hippocampus ultrastructure, Humans, Microtubule-Associated Proteins, Microtubules ultrastructure, Pyramidal Cells ultrastructure, Rats, Axons metabolism, Cytoskeletal Proteins metabolism, Dendrites metabolism, Microtubules metabolism, Pyramidal Cells metabolism
- Abstract
In neurons, most microtubules are not associated with a central microtubule-organizing center (MTOC), and therefore, both the minus and plus-ends of these non-centrosomal microtubules are found throughout the cell. Microtubule plus-ends are well established as dynamic regulatory sites in numerous processes, but the role of microtubule minus-ends has remained poorly understood. Using live-cell imaging, high-resolution microscopy, and laser-based microsurgery techniques, we show that the CAMSAP/Nezha/Patronin family protein CAMSAP2 specifically localizes to non-centrosomal microtubule minus-ends and is required for proper microtubule organization in neurons. CAMSAP2 stabilizes non-centrosomal microtubules and is required for neuronal polarity, axon specification, and dendritic branch formation in vitro and in vivo. Furthermore, we found that non-centrosomal microtubules in dendrites are largely generated by γ-Tubulin-dependent nucleation. We propose a two-step model in which γ-Tubulin initiates the formation of non-centrosomal microtubules and CAMSAP2 stabilizes the free microtubule minus-ends in order to control neuronal polarity and development., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
41. New insights into mRNA trafficking in axons.
- Author
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Gumy LF, Katrukha EA, Kapitein LC, and Hoogenraad CC
- Subjects
- Animals, Microtubules metabolism, Models, Neurological, Molecular Motor Proteins metabolism, Axons metabolism, RNA Transport, RNA, Messenger metabolism
- Abstract
In recent years, it has been demonstrated that mRNAs localize to axons of young and mature central and peripheral nervous system neurons in culture and in vivo. Increasing evidence is supporting a fundamental role for the local translation of these mRNAs in neuronal function by regulating axon growth, maintenance and regeneration after injury. Although most mRNAs found in axons are abundant transcripts and not restricted to the axonal compartment, they are sequestered into transport ribonucleoprotein particles and their axonal localization is likely the result of specific targeting rather than passive diffusion. It has been reported that long-distance mRNA transport requires microtubule-dependent motors, but the molecular mechanisms underlying the sorting and trafficking of mRNAs into axons have remained elusive. This review places particular emphasis on motor-dependent transport of mRNAs and presents a mathematical model that describes how microtubule-dependent motors can achieve targeted trafficking in axons. A future challenge will be to systematically explore how the numerous axonal mRNAs and RNA-binding proteins regulate different aspects of specific axonal mRNA trafficking during development and after regeneration., (Copyright © 2013 Wiley Periodicals, Inc.)
- Published
- 2014
- Full Text
- View/download PDF
42. Microtubule minus-end stabilization by polymerization-driven CAMSAP deposition.
- Author
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Jiang K, Hua S, Mohan R, Grigoriev I, Yau KW, Liu Q, Katrukha EA, Altelaar AF, Heck AJ, Hoogenraad CC, and Akhmanova A
- Subjects
- Adenosine Triphosphatases metabolism, Animals, HeLa Cells, Humans, Image Processing, Computer-Assisted, Katanin, Mice, Centrosome metabolism, Cytoskeletal Proteins metabolism, Microtubule-Associated Proteins metabolism, Microtubules metabolism
- Abstract
Microtubules are cytoskeletal polymers with two structurally and functionally distinct ends, the plus- and the minus-end. Here, we focus on the mechanisms underlying the regulation of microtubule minus-ends by the CAMSAP/Nezha/Patronin protein family. We show that CAMSAP2 is required for the proper organization and stabilization of interphase microtubules and directional cell migration. By combining live-cell imaging and in vitro reconstitution of microtubule assembly from purified components with laser microsurgery, we demonstrate that CAMSAPs regulate microtubule minus-end growth and are specifically deposited on the lattice formed by microtubule minus-end polymerization. This process leads to the formation of CAMSAP-decorated microtubule stretches, which are stabilized from both ends and serve as sites of noncentrosomal microtubule outgrowth. The length of the stretches is regulated by the microtubule-severing protein katanin, which interacts with CAMSAPs. Our data thus indicate that microtubule minus-end assembly drives the stabilization of noncentrosomal microtubules and that katanin regulates this process., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
43. Mechanical and geometrical constraints control kinesin-based microtubule guidance.
- Author
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Doodhi H, Katrukha EA, Kapitein LC, and Akhmanova A
- Subjects
- Animals, Humans, Cell Polarity physiology, Dendrites physiology, Kinesins physiology, Microtubules physiology, Models, Theoretical
- Abstract
Proper organization of microtubule networks depends on microtubule-associated proteins and motors that use different spatial cues to guide microtubule growth [1-3]. For example, it has been proposed that the uniform minus-end-out microtubule organization in dendrites of Drosophila neurons is maintained by steering of polymerizing microtubules along the stable ones by kinesin-2 motors bound to growing microtubule plus ends [4]. To explore the mechanics of kinesin-guided microtubule growth, we reconstituted this process in vitro. In the presence of microtubule plus-end tracking EB proteins, a constitutively active kinesin linked to the EB-interacting motif SxIP effectively guided polymerizing microtubules along other microtubules both in cells and in vitro. Experiments combined with modeling revealed that at angles larger than 90°, guidance efficiency is determined by the force needed for microtubule bending. At angles smaller than 90°, guidance requires microtubule growth, and guidance efficiency depends on the ability of kinesins to maintain contact between the two microtubules despite the geometrical constraints imposed by microtubule length and growth rate. Our findings provide a conceptual framework for understanding microtubule guidance during the generation of different types of microtubule arrays., (Copyright © 2014 Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
44. CFEOM1-associated kinesin KIF21A is a cortical microtubule growth inhibitor.
- Author
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van der Vaart B, van Riel WE, Doodhi H, Kevenaar JT, Katrukha EA, Gumy L, Bouchet BP, Grigoriev I, Spangler SA, Yu KL, Wulf PS, Wu J, Lansbergen G, van Battum EY, Pasterkamp RJ, Mimori-Kiyosue Y, Demmers J, Olieric N, Maly IV, Hoogenraad CC, and Akhmanova A
- Subjects
- Adaptor Proteins, Signal Transducing metabolism, Animals, COS Cells, Carrier Proteins metabolism, Cell Line, Chlorocebus aethiops, Cytoskeletal Proteins, Eye Diseases, Hereditary genetics, Growth Inhibitors, HEK293 Cells, HeLa Cells, Humans, Kinesins genetics, Morphogenesis, Nerve Tissue Proteins genetics, Nerve Tissue Proteins metabolism, Neurons cytology, Ophthalmoplegia, RNA Interference, RNA, Small Interfering, Tumor Suppressor Proteins metabolism, Eye Diseases, Hereditary metabolism, Fibrosis metabolism, Kinesins metabolism, Microtubules metabolism, Neurons metabolism, Ocular Motility Disorders metabolism
- Abstract
Mechanisms controlling microtubule dynamics at the cell cortex play a crucial role in cell morphogenesis and neuronal development. Here, we identified kinesin-4 KIF21A as an inhibitor of microtubule growth at the cell cortex. In vitro, KIF21A suppresses microtubule growth and inhibits catastrophes. In cells, KIF21A restricts microtubule growth and participates in organizing microtubule arrays at the cell edge. KIF21A is recruited to the cortex by KANK1, which coclusters with liprin-α1/β1 and the components of the LL5β-containing cortical microtubule attachment complexes. Mutations in KIF21A have been linked to congenital fibrosis of the extraocular muscles type 1 (CFEOM1), a dominant disorder associated with neurodevelopmental defects. CFEOM1-associated mutations relieve autoinhibition of the KIF21A motor, and this results in enhanced KIF21A accumulation in axonal growth cones, aberrant axon morphology, and reduced responsiveness to inhibitory cues. Our study provides mechanistic insight into cortical microtubule regulation and suggests that altered microtubule dynamics contribute to CFEOM1 pathogenesis., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
45. The kinesin-2 family member KIF3C regulates microtubule dynamics and is required for axon growth and regeneration.
- Author
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Gumy LF, Chew DJ, Tortosa E, Katrukha EA, Kapitein LC, Tolkovsky AM, Hoogenraad CC, and Fawcett JW
- Subjects
- Animals, Cells, Cultured, Female, Growth Cones metabolism, Growth Cones physiology, HEK293 Cells, Humans, Male, Mice, Mice, Knockout, Rats, Rats, Sprague-Dawley, Sciatic Neuropathy metabolism, Sciatic Neuropathy pathology, Axons physiology, Kinesins physiology, Microtubules physiology, Nerve Regeneration physiology
- Abstract
Axon regeneration after injury requires the extensive reconstruction, reorganization, and stabilization of the microtubule cytoskeleton in the growth cones. Here, we identify KIF3C as a key regulator of axonal growth and regeneration by controlling microtubule dynamics and organization in the growth cone. KIF3C is developmentally regulated. Rat embryonic sensory axons and growth cones contain undetectable levels of KIF3C protein that is locally translated immediately after injury. In adult neurons, KIF3C is axonally transported from the cell body and is enriched at the growth cone where it preferentially binds to tyrosinated microtubules. Functionally, the interaction of KIF3C with EB3 is necessary for its localization at the microtubule plus-ends in the growth cone. Depletion of KIF3C in adult neurons leads to an increase in stable, overgrown and looped microtubules because of a strong decrease in the microtubule frequency of catastrophes, suggesting that KIF3C functions as a microtubule-destabilizing factor. Adult axons lacking KIF3C, by RNA interference or KIF3C gene knock-out, display an impaired axonal outgrowth in vitro and a delayed regeneration after injury both in vitro and in vivo. Murine KIF3C knock-out embryonic axons grow normally but do not regenerate after injury because they are unable to locally translate KIF3C. These data show that KIF3C is an injury-specific kinesin that contributes to axon growth and regeneration by regulating and organizing the microtubule cytoskeleton in the growth cone.
- Published
- 2013
- Full Text
- View/download PDF
46. End-binding proteins sensitize microtubules to the action of microtubule-targeting agents.
- Author
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Mohan R, Katrukha EA, Doodhi H, Smal I, Meijering E, Kapitein LC, Steinmetz MO, and Akhmanova A
- Subjects
- Bridged Bicyclo Compounds, Heterocyclic, Colchicine, Depsipeptides, Green Fluorescent Proteins, HeLa Cells, Humans, Lactones, Microscopy, Fluorescence, Paclitaxel, Podophyllotoxin, Statistics, Nonparametric, Stilbenes, Vinblastine, Cellular Senescence physiology, Microtubule-Associated Proteins metabolism, Microtubules metabolism, Microtubules physiology, Models, Biological, Tubulin Modulators metabolism
- Abstract
Microtubule-targeting agents (MTAs) are widely used for treatment of cancer and other diseases, and a detailed understanding of the mechanism of their action is important for the development of improved microtubule-directed therapies. Although there is a large body of data on the interactions of different MTAs with purified tubulin and microtubules, much less is known about how the effects of MTAs are modulated by microtubule-associated proteins. Among the regulatory factors with a potential to have a strong impact on MTA activity are the microtubule plus end-tracking proteins, which control multiple aspects of microtubule dynamic instability. Here, we reconstituted microtubule dynamics in vitro to investigate the influence of end-binding proteins (EBs), the core components of the microtubule plus end-tracking protein machinery, on the effects that MTAs exert on microtubule plus-end growth. We found that EBs promote microtubule catastrophe induction in the presence of all MTAs tested. Analysis of microtubule growth times supported the view that catastrophes are microtubule age dependent. This analysis indicated that MTAs affect microtubule aging in multiple ways: destabilizing MTAs, such as colchicine and vinblastine, accelerate aging in an EB-dependent manner, whereas stabilizing MTAs, such as paclitaxel and peloruside A, induce not only catastrophes but also rescues and can reverse the aging process.
- Published
- 2013
- Full Text
- View/download PDF
47. Myosin-V opposes microtubule-based cargo transport and drives directional motility on cortical actin.
- Author
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Kapitein LC, van Bergeijk P, Lipka J, Keijzer N, Wulf PS, Katrukha EA, Akhmanova A, and Hoogenraad CC
- Subjects
- Animals, Biological Transport, Active, COS Cells, Cell Movement, Chlorocebus aethiops, Mice, Polymerase Chain Reaction, Actins metabolism, Kinesins metabolism, Microtubules metabolism, Myosin Type V metabolism
- Abstract
Intracellular transport is driven by motor proteins that either use microtubules or actin filaments as their tracks, but the interplay between these transport pathways is poorly understood. Whereas many microtubule-based motors are known to drive long-range transport, several actin-based motors have been proposed to function predominantly in cargo tethering. How these opposing activities are integrated on cargoes that contain both types of motors is unknown. Here we use inducible intracellular transport assays to show that acute recruitment of myosin-V to kinesin-propelled cargo reduces their motility near the cell periphery and enhances their localization at the actin-rich cell cortex. Myosin-V arrests rapid microtubule-based transport without the need for regulated auto- or other inhibition of kinesin motors. In addition, myosin-V, despite being an ineffective long-range transporter, can drive slow, medium-range (1-5 μm), point-to-point transport in cortical cell regions. Altogether, these data support a model in which myosin-V establishes local cortical delivery of kinesin-bound cargos through a combination of tethering and active transport., (Copyright © 2013 Elsevier Ltd. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
48. Novel aryl and heteroaryl substituted N-[3-(4-phenylpiperazin-1-yl)propyl]-1,2,4-oxadiazole-5-carboxamides as selective GSK-3 inhibitors.
- Author
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Koryakova AG, Ivanenkov YA, Ryzhova EA, Bulanova EA, Karapetian RN, Mikitas OV, Katrukha EA, Kazey VI, Okun I, Kravchenko DV, Lavrovsky YV, Korzinov OM, and Ivachtchenko AV
- Subjects
- Dose-Response Relationship, Drug, Drug Evaluation, Preclinical, Glycogen Synthase Kinase 3 beta, Inhibitory Concentration 50, Molecular Structure, Oxadiazoles chemical synthesis, Oxadiazoles chemistry, Piperazines chemical synthesis, Piperazines chemistry, Protein Kinase Inhibitors chemical synthesis, Protein Kinase Inhibitors chemistry, Small Molecule Libraries, Stereoisomerism, Structure-Activity Relationship, Glycogen Synthase Kinase 3 antagonists & inhibitors, Oxadiazoles pharmacology, Piperazines pharmacology, Protein Kinase Inhibitors pharmacology
- Abstract
Synthesis, biological evaluation, and SAR dependencies for a series of novel aryl and heteroaryl substituted N-[3-(4-phenylpiperazin-1-yl)propyl]-1,2,4-oxadiazole-5-carboxamide inhibitors of GSK-3beta kinase are described. The inhibitory activity of the synthesized compounds is highly dependent on the character of substituents in the phenyl ring and the nature of terminal heterocyclic fragment of the core molecular scaffold. The most potent compounds from this series contain 3,4-di-methyl or 2-methoxy substituents within the phenyl ring and 3-pyridine fragment connected to the 1,2,4-oxadiazole heterocycle. These compounds selectively inhibit GSK-3beta kinase with IC(50) value of 0.35 and 0.41 microM, respectively.
- Published
- 2008
- Full Text
- View/download PDF
49. [Dynamic instabilities in microtubule cytoskeleton. A phase diagram].
- Author
-
Katrukha EA and Guriia GT
- Subjects
- Guanosine Triphosphate metabolism, Hydrolysis, Kinetics, Phase Transition, Tubulin metabolism, Microtubules physiology, Models, Biological
- Abstract
Instabilities in the growth and depolymerization of microtubules are considered in the framework of self-organization theory. An extended reaction-diffusion model for the microtubule dynamics has been formulated. A phase diagram of microtubule cytoskeleton has been constructed, which determines the regions of stability for steady and nonstationary solutions of the model. It is shown that the instabilities in microtubule dynamics result from kinetic nonequilibrium phase transitions. On the basis of phase diagram structure, a general classification of the microtubule cytostatic regulatory factors is suggested. The problem of mutual amplification of the activity of cytostatic agents is discussed.
- Published
- 2006
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