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15 results on '"Ke, Hongji"'

6. Complete chloroplast genome of green alga Caulerpa sertularioides f. longipes (J.Agardh) Collins, 1909

Author

Fan Jiawei, Chen Fuxiao, Wang Rongxia, Ke Hongji, Wang Yongbo, Hongtao Liu, and Wei Tan

Subjects
0106 biological sciences, 0301 basic medicine, South china, biology, biology.organism_classification, 010603 evolutionary biology, 01 natural sciences, Genome, Caulerpa sertularioides, Chloroplast, 03 medical and health sciences, 030104 developmental biology, Botany, Genetics, Molecular Biology
Abstract

The complete chloroplast (cp) genome of Caulerpa sertularioides f. longipes was first assembled and characterized using Illumina pair-end sequencing from the South China Sea. It is 133,626 bp long,...

Published
2019

7. Complete chloroplast genome of green alga Caulerpa serrulata (Forsskål) J.Agardh, 1837

Author

Fan Jiawei, Ke Hongji, Wang Rongxia, Hongtao Liu, Wei Tan, Wang Yongbo, and Chen Fuxiao

Subjects
0106 biological sciences, 0301 basic medicine, South china, Phylogenetic tree, Caulerpa serrulata, food and beverages, Biology, biology.organism_classification, 010603 evolutionary biology, 01 natural sciences, Genome, Chloroplast, 03 medical and health sciences, 030104 developmental biology, Botany, Genetics, Chloroplast genome, phylogenetic tree, Molecular Biology, Mitogenome Announcement, Research Article
Abstract

The complete chloroplast genome of Caulerpa serrulata from South China Sea has been assembled and characterized for the first time. The circular chloroplast genome was 177,848 bp in length, with a GC content of 33.80%. It contained 117 genes, which included 78 protein-coding genes, 37 tRNA genes, and 2 ribosomal RNA genes. Like other species in Caulerpa, the chloroplast genome of C. serrulata did not demonstrate a typical quadripartite structure. A total of 35 microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis showed that C. serrulata was closer to Caulerpa cupressoides, which further clarified the phylogenetic relationships of species in Caulerpa.

Published
2019

8. Complete chloroplast genome of red seaweedHalymenia maculata(J. Agardh, 1885)

Author

Fan Jiawei, Wang Yongbo, Hongtao Liu, Wei Tan, Wang Rongxia, Ke Hongji, and Chen Fuxiao

Subjects
0106 biological sciences, 0301 basic medicine, Halymenia maculata, Biology, biology.organism_classification, 010603 evolutionary biology, 01 natural sciences, Genome, Chloroplast, 03 medical and health sciences, 030104 developmental biology, Algae, Botany, Genetics, Molecular Biology, Gene
Abstract

In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes ...

Published
2019

9. Complete mitochondrial genome of Buffon’s river garfish Zenarchopterus buffonis (Valenciennes, 1847)

Author

Fan Jiawei, Luo Ming, Wang Yongbo, Ke Hongji, Hongtao Liu, Wei Tan, Liu Longlong, Liu Jinye, Yuxiang Zhang, Fu Shuyuan, and Chen Fuxiao

Subjects
0106 biological sciences, 0301 basic medicine, Mitochondrial DNA, South china, biology, Phylogenetic tree, Zenarchopterus buffonis, biology.organism_classification, 010603 evolutionary biology, 01 natural sciences, 03 medical and health sciences, 030104 developmental biology, Evolutionary biology, Transfer RNA, Genetics, Molecular Biology, Gene
Abstract

The complete mitochondrial genome of Buffon’s river garfish Zenarchopterus buffonis from South China Sea has been obtained for the first time. It is 16,462 bp long, and contains 21 tRNA genes, 2 rR...

Published
2019

14. Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885).

Author

Tan, Wei, Wang, Rongxia, Liu, Hongtao, Wang, Yongbo, Ke, Hongji, Fan, Jiawei, and Chen, Fuxiao

Subjects
RED algae, CHLOROPLAST DNA, CHLOROPLASTS, MICROSATELLITE repeats, TRANSFER RNA, RIBOSOMAL RNA
Abstract

In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The chloroplast genome of H. maculata did not show an obvious quadripartite structure. A total of five microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis revealed that H. maculata was first clustered with Grateloupia filicina and Grateloupia taiwanensis in a monophyletic clade that provides useful data for the phylogeny and taxonomy of Rhodymeniophycidae. [ABSTRACT FROM AUTHOR]

Published
2019
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15. Complete chloroplast genome of red seaweed Halymenia maculata (J. Agardh, 1885).

Author

Tan W, Wang R, Liu H, Wang Y, Ke H, Fan J, and Chen F

Abstract

In this study, we first assembled and characterized the complete chloroplast genome of red seaweed Halymenia maculata. It is 190,431 bp in length, with an AT content of 70.56%. In total, 122 genes were identified, and they consisted of 87 protein-coding genes, 33 tRNA genes, and two rRNA genes. The chloroplast genome of H. maculata did not show an obvious quadripartite structure. A total of five microsatellites (SSRs) were identified in the genome using MISA. Phylogenetic analysis revealed that H. maculata was first clustered with Grateloupia filicina and Grateloupia taiwanensis in a monophyletic clade that provides useful data for the phylogeny and taxonomy of Rhodymeniophycidae., Competing Interests: No potential conflict of interest was reported by the authors., (© 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.)

Published
2019
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