19 results on '"Keramati F"'
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2. The Art of Innate War. Exploring Innate Immune Memory and Engineered Innate T Cells Against Persistent Threats.
- Author
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Keramati, F. and Keramati, F.
- Subjects
- Molecular Biology.
- Published
- 2024
3. Chronic HIV infection induces transcriptional and functional reprogramming of innate immune cells
- Author
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Heijden, W.A. van der, Wijer, L. van de, Keramati, F., Rutsaert, S., Horst, R. ter, Jaeger, M., Koenen, H.J.P.M., Stunnenberg, H., Joosten, I., Verweij, P.E., Dinarello, C.A., Joosten, L.A.B., Netea, M.G., Ven, A.J.A.M. van der, Mast, Q. de, Heijden, W.A. van der, Wijer, L. van de, Keramati, F., Rutsaert, S., Horst, R. ter, Jaeger, M., Koenen, H.J.P.M., Stunnenberg, H., Joosten, I., Verweij, P.E., Dinarello, C.A., Joosten, L.A.B., Netea, M.G., Ven, A.J.A.M. van der, and Mast, Q. de
- Abstract
Contains fulltext : 233329.pdf (Publisher’s version ) (Open Access)
- Published
- 2021
4. Controlled Human Malaria Infection Induces Long-Term Functional Changes in Monocytes
- Author
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Walk, J., Keramati, F., Bree, L.C.J. de, Arts, R.J.W., Blok, B.A., Netea, M.G., Stunnenberg, H.G., Sauerwein, R.W., Walk, J., Keramati, F., Bree, L.C.J. de, Arts, R.J.W., Blok, B.A., Netea, M.G., Stunnenberg, H.G., and Sauerwein, R.W.
- Abstract
Contains fulltext : 229574.pdf (publisher's version ) (Open Access), Innate immune memory responses (also termed "trained immunity") have been described in monocytes after BCG vaccination and after stimulation in vitro with microbial and endogenous ligands such as LPS, β-glucan, oxidized LDL, and monosodium urate crystals. However, whether clinical infections are also capable of inducing a trained immunity phenotype remained uncertain. We evaluated whether Plasmodium falciparum infection can induce innate immune memory by measuring monocyte-derived cytokine production from five volunteers undergoing Controlled Human Malaria Infection. Monocyte responses followed a biphasic pattern: during acute infection, monocytes produced lower amounts of inflammatory cytokines upon secondary stimulation, but 36 days after malaria infection they produced significantly more IL-6 and TNF-α in response to various stimuli. Furthermore, transcriptomic and epigenomic data analysis revealed a clear reprogramming of monocytes at both timepoints, with long-term changes of H3K4me3 at the promoter regions of inflammatory genes that remain present for several weeks after parasite clearance. These findings demonstrate an epigenetic basis of trained immunity induced by human malaria in vivo.
- Published
- 2020
5. beta-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance
- Author
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Novakovic, B., Habibi, E., Wang, S.Y., Arts, R.J., Davar, R., Megchelenbrink, W., Kim, B., Kuznetsova, T., Kox, M., Zwaag, J., Matarese, F., Heeringen, S.J. van, Janssen-Megens, E.M., Sharifi, N., Wang, C., Keramati, F., Schoonenberg, V., Flicek, P., Clarke, L., Pickkers, P., Heath, S., Gut, I., Netea, M.G., Martens, J.H., Logie, C., Stunnenberg, H.G., Novakovic, B., Habibi, E., Wang, S.Y., Arts, R.J., Davar, R., Megchelenbrink, W., Kim, B., Kuznetsova, T., Kox, M., Zwaag, J., Matarese, F., Heeringen, S.J. van, Janssen-Megens, E.M., Sharifi, N., Wang, C., Keramati, F., Schoonenberg, V., Flicek, P., Clarke, L., Pickkers, P., Heath, S., Gut, I., Netea, M.G., Martens, J.H., Logie, C., and Stunnenberg, H.G.
- Abstract
Contains fulltext : 165879.pdf (publisher's version ) (Open Access), Innate immune memory is the phenomenon whereby innate immune cells such as monocytes or macrophages undergo functional reprogramming after exposure to microbial components such as lipopolysaccharide (LPS). We apply an integrated epigenomic approach to characterize the molecular events involved in LPS-induced tolerance in a time-dependent manner. Mechanistically, LPS-treated monocytes fail to accumulate active histone marks at promoter and enhancers of genes in the lipid metabolism and phagocytic pathways. Transcriptional inactivity in response to a second LPS exposure in tolerized macrophages is accompanied by failure to deposit active histone marks at promoters of tolerized genes. In contrast, beta-glucan partially reverses the LPS-induced tolerance in vitro. Importantly, ex vivo beta-glucan treatment of monocytes from volunteers with experimental endotoxemia re-instates their capacity for cytokine production. Tolerance is reversed at the level of distal element histone modification and transcriptional reactivation of otherwise unresponsive genes. VIDEO ABSTRACT.
- Published
- 2016
6. beta-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance
- Author
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Mihai G. Netea, Cheng Wang, Filomena Matarese, Hendrik G. Stunnenberg, Joost H.A. Martens, Ivo Gut, Paul Flicek, Laura Clarke, Colin Logie, Jelle Zwaag, Ehsan Habibi, Robab Davar, Eva M. Janssen-Megens, Nilofar Sharifi, Vivien Schoonenberg, Wout Megchelenbrink, Matthijs Kox, Rob J.W. Arts, Tatyana Kuznetsova, Peter Pickkers, Simon J. van Heeringen, Farid Keramati, Boris Novakovic, Simon Heath, Shuang-Yin Wang, Bowon Kim, Novakovic, B., Habibi, E., Wang, S. -Y., Arts, R. J. W., Davar, R., Megchelenbrink, W., Kim, B., Kuznetsova, T., Kox, M., Zwaag, J., Matarese, F., van Heeringen, S. J., Janssen-Megens, E. M., Sharifi, N., Wang, C., Keramati, F., Schoonenberg, V., Flicek, P., Clarke, L., Pickkers, P., Heath, S., Gut, I., Netea, M. G., Martens, J. H. A., Logie, C., and Stunnenberg, H. G.
- Subjects
0301 basic medicine ,Epigenomics ,Lipopolysaccharides ,beta-Glucans ,Lipopolysaccharide ,Transcription, Genetic ,Macrophage ,medicine.medical_treatment ,epigenome ,lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4] ,human monocytes ,Monocyte ,Monocytes ,human monocyte ,chemistry.chemical_compound ,histone modification ,Gene Regulatory Networks ,GeneralLiterature_REFERENCE(e.g.,dictionaries,encyclopedias,glossaries) ,Gene Regulatory Network ,biology ,histone modifications ,BLUEPRINT ,lipopolysaccharide ,Cell Differentiation ,Cell biology ,macrophages ,Histone Code ,Histone ,Cytokine ,Reprogramming ,Human ,Epigenomic ,Sepsi ,β-glucan ,beta-Glucan ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,trained innate immunity ,endotoxin tolerance ,Sepsis ,medicine ,Immune Tolerance ,Humans ,Epigenetics ,Molecular Biology ,Innate immune system ,Biochemistry, Genetics and Molecular Biology(all) ,Epigenome ,DNA Methylation ,Immunity, Innate ,030104 developmental biology ,chemistry ,Immunology ,biology.protein ,Immunologic Memory ,transcriptome - Abstract
Contains fulltext : 165879.pdf (Publisher’s version ) (Open Access) Innate immune memory is the phenomenon whereby innate immune cells such as monocytes or macrophages undergo functional reprogramming after exposure to microbial components such as lipopolysaccharide (LPS). We apply an integrated epigenomic approach to characterize the molecular events involved in LPS-induced tolerance in a time-dependent manner. Mechanistically, LPS-treated monocytes fail to accumulate active histone marks at promoter and enhancers of genes in the lipid metabolism and phagocytic pathways. Transcriptional inactivity in response to a second LPS exposure in tolerized macrophages is accompanied by failure to deposit active histone marks at promoters of tolerized genes. In contrast, beta-glucan partially reverses the LPS-induced tolerance in vitro. Importantly, ex vivo beta-glucan treatment of monocytes from volunteers with experimental endotoxemia re-instates their capacity for cytokine production. Tolerance is reversed at the level of distal element histone modification and transcriptional reactivation of otherwise unresponsive genes. VIDEO ABSTRACT.
- Published
- 2016
7. Evaluation of the relationship between worry and anxiety with the general health status of pregnant women at risk of diagnosing abnormalities.
- Author
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Bashtian MH, Irani M, Afshari-Safavi A, Keramati F, Ram R, and Farazmand T
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- Humans, Female, Pregnancy, Adult, Cross-Sectional Studies, Young Adult, Congenital Abnormalities psychology, Congenital Abnormalities diagnosis, Congenital Abnormalities diagnostic imaging, Iran epidemiology, Pregnancy Complications psychology, Pregnancy Complications diagnosis, Ultrasonography, Prenatal, Anxiety, Health Status, Pregnant People psychology
- Abstract
Background: Today, the screening of fetal abnormalities during pregnancy is used as one of the components of the prenatal care worldwide, and many abnormalities are detected by ultrasound during pregnancy. On the other hand, the possibility of an abnormality in the fetus causes worry and anxiety in pregnant women. Therefore, the present study was conducted with the aim of determining the relationship between worry and anxiety with the general health status of pregnant women at risk of diagnosing fetal abnormalities., Methods: This descriptive-analytical cross-sectional study was conducted on 275 pregnant women with a gestational age of 16 to 18 weeks. They were referred by health centers, midwives, or gynecologists to determine fetal abnormalities according to the national guidelines of Iran for ultrasound scan anomalies. Pregnancy imaging was performed in Bojnurd city between April and December 2023. The data collection tools included a pregnancy-personal characteristics questionnaire, Goldberg general health standard questionnaire, Cambridge anxiety, and Spielberger anxiety scales. Data were analyzed using descriptive statistics tests, Pearson's correlation coefficient, and generalized linear models (GLM). A significance level of p < 0.05 was considered statistically., Results: The average age of the participants was 28.13 ± 6.17 years. The average total score of general health was 15.49 ± 7.14, while the average total worry and anxiety scores were 16.81 ± 11.74 and 45.12 ± 6.06, respectively. A positive and significant correlation was observed between general health and worry (r = 0.374), as well as between general health and anxiety (r = 0.160). Additionally, based on the test of generalized linear models, education (beta coefficient = - 3.208 and p = 0.008) and type of pregnancy (beta coefficient = - 2.323 and p = 0.029) were related to general health., Conclusion: The present findings demonstrate a relationship between the general health and worry and anxiety levels of pregnant women at risk of abnormality diagnosis. Pregnant women who are anxious and worried tend to have lower general health levels. Understanding this relationship between worry, anxiety, and the general health of pregnant women can provide useful information to policymakers and health planners to improve the health of expectant mothers., Competing Interests: Declarations. Ethics approval and consent to participate: The research collaboration between North Khorasan University of Medical Sciences and Torbat Heydarieh University of Medical Sciences received approval with project code 4010089 and ethics code IR.NKUMS.REC.1401.04 from North Khorasan University of Medical Sciences’ Institutional Review Board. Competing interests: The authors declare no competing interests., (© 2024. The Author(s).)
- Published
- 2025
- Full Text
- View/download PDF
8. Uncovering the mode of action of engineered T cells in patient cancer organoids.
- Author
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Dekkers JF, Alieva M, Cleven A, Keramati F, Wezenaar AKL, van Vliet EJ, Puschhof J, Brazda P, Johanna I, Meringa AD, Rebel HG, Buchholz MB, Barrera Román M, Zeeman AL, de Blank S, Fasci D, Geurts MH, Cornel AM, Driehuis E, Millen R, Straetemans T, Nicolasen MJT, Aarts-Riemens T, Ariese HCR, Johnson HR, van Ineveld RL, Karaiskaki F, Kopper O, Bar-Ephraim YE, Kretzschmar K, Eggermont AMM, Nierkens S, Wehrens EJ, Stunnenberg HG, Clevers H, Kuball J, Sebestyen Z, and Rios AC
- Subjects
- Humans, Immunotherapy methods, Organoids pathology, T-Lymphocytes, Neoplasms genetics, Neoplasms therapy
- Abstract
Extending the success of cellular immunotherapies against blood cancers to the realm of solid tumors will require improved in vitro models that reveal therapeutic modes of action at the molecular level. Here we describe a system, called BEHAV3D, developed to study the dynamic interactions of immune cells and patient cancer organoids by means of imaging and transcriptomics. We apply BEHAV3D to live-track >150,000 engineered T cells cultured with patient-derived, solid-tumor organoids, identifying a 'super engager' behavioral cluster comprising T cells with potent serial killing capacity. Among other T cell concepts we also study cancer metabolome-sensing engineered T cells (TEGs) and detect behavior-specific gene signatures that include a group of 27 genes with no previously described T cell function that are expressed by super engager killer TEGs. We further show that type I interferon can prime resistant organoids for TEG-mediated killing. BEHAV3D is a promising tool for the characterization of behavioral-phenotypic heterogeneity of cellular immunotherapies and may support the optimization of personalized solid-tumor-targeting cell therapies., (© 2022. The Author(s).)
- Published
- 2023
- Full Text
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9. Circulating miRNAs can serve as potential diagnostic biomarkers in chronic myelogenous leukemia patients.
- Author
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Keramati F, Jafarian A, Soltani A, Javandoost E, Mollaei M, and Fallah P
- Abstract
Introduction: Chronic Myelogenous Leukemia (CML) is a myeloproliferative disorder described as a malignant blood disorder by accounts for 15-20% of all adult leukemia. MicroRNAs (miRNAs) play an important role in post-transcriptional regulation of gene expressions. Expression level of tumor suppressor-miRNAs, described as miRNAs that target the oncogens, can contribute to diagnosis and prognosis of some malignant disorders including CML. We theorized that according to the excessive proliferation and alteration in miRNA expressions, there could be a change in the expression of miRNAs in plasma carried by exosomes., Methods: We consequently decided to detect the differences between normal and aberrant miRNA expression in human plasma sample to find out the possibility of diagnosis by these alterations. The expression of candidate miRNAs were compared using RNA extracted from the plasma of 50 patients, as well as 30 healthy individuals. We analysed the plasma miR-16-1, miR-20, miR-106, miR-126, miR-155, miR-222, and miR-451 expression levels in CML patients by individual real-time quantitative RT-PCR., Results: All selected miRNAs were found to be upregulated in newly diagnosed CML patients compared to the control, while upregulation of only three (miR-20, 106 and 222) were significant (17.4, 19 and 74.95 fold change, respectively; p <0.0001)., In Conclusion: microRNAs have a potential use in treatment of CML, as they can target the genes involved in cell cycle, MAPK, growth inhibition, TGF beta, and p53 signaling pathways. Therefore, these miRNA signatures provide the basis for their utilization as biomarkers in CML., Competing Interests: No competing financial interests exist., (© 2021 The Authors. Published by Elsevier Ltd.)
- Published
- 2021
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10. Chronic HIV infection induces transcriptional and functional reprogramming of innate immune cells.
- Author
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van der Heijden WA, Van de Wijer L, Keramati F, Trypsteen W, Rutsaert S, Horst RT, Jaeger M, Koenen HJ, Stunnenberg HG, Joosten I, Verweij PE, van Lunzen J, Dinarello CA, Joosten LA, Vandekerckhove L, Netea MG, van der Ven AJ, and de Mast Q
- Subjects
- Adult, Anti-HIV Agents therapeutic use, Case-Control Studies, Chronic Disease, Cytokines genetics, Cytokines immunology, Female, Gene Expression, HIV Infections drug therapy, HIV Infections genetics, Humans, Inflammation blood, Inflammation immunology, Inflammation virology, Interleukin-1beta genetics, Lipopolysaccharides pharmacology, Male, Middle Aged, Monocytes immunology, Monocytes virology, Neutrophils drug effects, Neutrophils immunology, beta-Glucans metabolism, HIV Infections immunology, Immunity, Innate genetics, Interleukin-1beta blood
- Abstract
Chronic inflammation and immune dysfunction play a key role in the development of non-AIDS-related comorbidities. The aim of our study was to characterize the functional phenotype of immune cells in people living with HIV (PLHIV). We enrolled a cross-sectional cohort study of PLHIV on stable antiretroviral therapy and healthy controls. We assessed ex vivo cytokine production capacity and transcriptomics of monocytes and T cells upon bacterial, fungal, and viral stimulation. PLHIV exhibited an exacerbated proinflammatory profile in monocyte-derived cytokines, but not in lymphocyte-derived cytokines. Particularly, the production of the IL-1β to imiquimod, E. coli LPS, and Mycobacterium tuberculosis was increased, and this production correlated with plasma concentrations of high-sensitivity C-reactive protein and soluble CD14. This increase in monocyte responsiveness remained stable over time in subsequent blood sampling after more than 1 year. Transcriptome analyses confirmed priming of the monocyte IL-1β pathway, consistent with a monocyte-trained immunity phenotype. Increased plasma concentrations of β-glucan, a well-known inducer of trained immunity, were associated with increased innate cytokine responses. Monocytes of PLHIV exhibited a sustained proinflammatory immune phenotype with priming of the IL-1β pathway. Training of the innate immune system in PLHIV likely plays a role in long-term HIV complications and provides a promising therapeutic target for inflammation-related comorbidities.
- Published
- 2021
- Full Text
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11. Recent Advances in Genome Editing Tools in Medical Mycology Research.
- Author
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Nargesi S, Kaboli S, Thekkiniath J, Heidari S, Keramati F, Seyedmousavi S, and Hedayati MT
- Abstract
Manipulating fungal genomes is an important tool to understand the function of target genes, pathobiology of fungal infections, virulence potential, and pathogenicity of medically important fungi, and to develop novel diagnostics and therapeutic targets. Here, we provide an overview of recent advances in genetic manipulation techniques used in the field of medical mycology. Fungi use several strategies to cope with stress and adapt themselves against environmental effectors. For instance, mutations in the 14 alpha-demethylase gene may result in azole resistance in Aspergillus fumigatus strains and shield them against fungicide's effects. Over the past few decades, several genome editing methods have been introduced for genetic manipulations in pathogenic fungi. Application of restriction enzymes to target and cut a double-stranded DNA in a pre-defined sequence was the first technique used for cloning in Aspergillus and Candida . Genome editing technologies, including zinc-finger nucleases (ZFNs) and transcriptional activator-like effector nucleases (TALENs), have been also used to engineer a double-stranded DNA molecule. As a result, TALENs were considered more practical to identify single nucleotide polymorphisms. Recently, Class 2 type II Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)/Cas9 technology has emerged as a more useful tool for genome manipulation in fungal research.
- Published
- 2021
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12. Controlled Human Malaria Infection Induces Long-Term Functional Changes in Monocytes.
- Author
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Walk J, Keramati F, de Bree LCJ, Arts RJW, Blok B, Netea MG, Stunnenberg HG, and Sauerwein RW
- Abstract
Innate immune memory responses (also termed " trained immunity ") have been described in monocytes after BCG vaccination and after stimulation in vitro with microbial and endogenous ligands such as LPS, β-glucan, oxidized LDL, and monosodium urate crystals. However, whether clinical infections are also capable of inducing a trained immunity phenotype remained uncertain. We evaluated whether Plasmodium falciparum infection can induce innate immune memory by measuring monocyte-derived cytokine production from five volunteers undergoing Controlled Human Malaria Infection. Monocyte responses followed a biphasic pattern: during acute infection, monocytes produced lower amounts of inflammatory cytokines upon secondary stimulation, but 36 days after malaria infection they produced significantly more IL-6 and TNF-α in response to various stimuli. Furthermore, transcriptomic and epigenomic data analysis revealed a clear reprogramming of monocytes at both timepoints, with long-term changes of H3K4me3 at the promoter regions of inflammatory genes that remain present for several weeks after parasite clearance. These findings demonstrate an epigenetic basis of trained immunity induced by human malaria in vivo ., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2020 Walk, Keramati, de Bree, Arts, Blok, Netea, Stunnenberg and Sauerwein.)
- Published
- 2020
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13. Outcomes of controlled human malaria infection after BCG vaccination.
- Author
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Walk J, de Bree LCJ, Graumans W, Stoter R, van Gemert GJ, van de Vegte-Bolmer M, Teelen K, Hermsen CC, Arts RJW, Behet MC, Keramati F, Moorlag SJCFM, Yang ASP, van Crevel R, Aaby P, de Mast Q, van der Ven AJAM, Stabell Benn C, Netea MG, and Sauerwein RW
- Subjects
- Adolescent, Adult, Animals, Anopheles parasitology, B7-2 Antigen metabolism, BCG Vaccine administration & dosage, C-Reactive Protein metabolism, Cytokines blood, Female, GPI-Linked Proteins metabolism, Granzymes blood, HLA-DR Antigens metabolism, Humans, Interferon-gamma blood, Lymphocyte Activation immunology, Male, Parasitemia prevention & control, Plasmodium falciparum immunology, Receptors, IgG metabolism, Vaccination, Young Adult, BCG Vaccine immunology, Immunity, Innate immunology, Immunologic Memory immunology, Killer Cells, Natural immunology, Malaria, Falciparum immunology, Malaria, Falciparum prevention & control
- Abstract
Recent evidence suggests that certain vaccines, including Bacillus-Calmette Guérin (BCG), can induce changes in the innate immune system with non-specific memory characteristics, termed 'trained immunity'. Here we present the results of a randomised, controlled phase 1 clinical trial in 20 healthy male and female volunteers to evaluate the induction of immunity and protective efficacy of the anti-tuberculosis BCG vaccine against a controlled human malaria infection. After malaria challenge infection, BCG vaccinated volunteers present with earlier and more severe clinical adverse events, and have significantly earlier expression of NK cell activation markers and a trend towards earlier phenotypic monocyte activation. Furthermore, parasitemia in BCG vaccinated volunteers is inversely correlated with increased phenotypic NK cell and monocyte activation. The combined data demonstrate that BCG vaccination alters the clinical and immunological response to malaria, and form an impetus to further explore its potential in strategies for clinical malaria vaccine development.
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- 2019
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14. Network of three specific microRNAs influence type 2 diabetes through inducing insulin resistance in muscle cell lines.
- Author
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Honardoost M, Keramati F, Arefian E, Mohammadi Yeganeh S, and Soleimani M
- Abstract
Insulin resistance has been implicated as one of the best predictors for type 2 diabetes. Growing evidence propose the involvement of microRNAs (miRNAs) as short regulatory molecules in modulating and inducing resistance. In this regard, we have investigated the role of three selected miRNAs in insulin resistance development (miR-135, miR-202, and miR-214), via assessing glucose uptake levels in C2C12 and L6 muscle cell lines. Interestingly, miRNA-transfected cells demonstrated a significantly different glucose uptake compared to the positive control cells. In addition, we evaluated the expression levels of three putative miRNA target genes (Rho-associated coiled-coil containing protein kinase 1, serine/threonine kinase 2, and vesicle-associated membrane protein 2) in transfected cells, recruiting luciferase assay. Our results indicated the targeting and downregulation of Rho-associated coiled-coil containing protein kinase 1 and serine/threonine kinase 2 genes in all miR-transfected cell lines ( P ≤ 0.05), but not for vesicle-associated membrane protein 2. MiRNA upregulation led to the poor stimulation of glucose uptake through insulin and developed insulin-resistant phenotype in both muscle cell lines. Our study showed the role of three miRNAs in the induction of insulin resistance in cell lines and making them prone to type 2 diabetes development., (© 2018 Wiley Periodicals, Inc.)
- Published
- 2019
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15. Tissue engineering; strategies, tissues, and biomaterials.
- Author
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Bakhshandeh B, Zarrintaj P, Oftadeh MO, Keramati F, Fouladiha H, Sohrabi-Jahromi S, and Ziraksaz Z
- Subjects
- Cell- and Tissue-Based Therapy, Humans, Intercellular Signaling Peptides and Proteins, Biocompatible Materials, Regenerative Medicine methods, Tissue Engineering methods
- Abstract
Current tissue regenerative strategies rely mainly on tissue repair by transplantation of the synthetic/natural implants. However, limitations of the existing strategies have increased the demand for tissue engineering approaches. Appropriate cell source, effective cell modification, and proper supportive matrices are three bases of tissue engineering. Selection of appropriate methods for cell stimulation, scaffold synthesis, and tissue transplantation play a definitive role in successful tissue engineering. Although the variety of the players are available, but proper combination and functional synergism determine the practical efficacy. Hence, in this review, a comprehensive view of tissue engineering and its different aspects are investigated.
- Published
- 2017
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16. β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance.
- Author
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Novakovic B, Habibi E, Wang SY, Arts RJW, Davar R, Megchelenbrink W, Kim B, Kuznetsova T, Kox M, Zwaag J, Matarese F, van Heeringen SJ, Janssen-Megens EM, Sharifi N, Wang C, Keramati F, Schoonenberg V, Flicek P, Clarke L, Pickkers P, Heath S, Gut I, Netea MG, Martens JHA, Logie C, and Stunnenberg HG
- Subjects
- Cell Differentiation, DNA Methylation, Epigenomics, Gene Regulatory Networks, Histone Code, Humans, Immunity, Innate, Immunologic Memory, Macrophages cytology, Monocytes cytology, Sepsis genetics, Immune Tolerance, Lipopolysaccharides immunology, Macrophages immunology, Monocytes immunology, Sepsis immunology, Transcription, Genetic, beta-Glucans immunology
- Abstract
Innate immune memory is the phenomenon whereby innate immune cells such as monocytes or macrophages undergo functional reprogramming after exposure to microbial components such as lipopolysaccharide (LPS). We apply an integrated epigenomic approach to characterize the molecular events involved in LPS-induced tolerance in a time-dependent manner. Mechanistically, LPS-treated monocytes fail to accumulate active histone marks at promoter and enhancers of genes in the lipid metabolism and phagocytic pathways. Transcriptional inactivity in response to a second LPS exposure in tolerized macrophages is accompanied by failure to deposit active histone marks at promoters of tolerized genes. In contrast, β-glucan partially reverses the LPS-induced tolerance in vitro. Importantly, ex vivo β-glucan treatment of monocytes from volunteers with experimental endotoxemia re-instates their capacity for cytokine production. Tolerance is reversed at the level of distal element histone modification and transcriptional reactivation of otherwise unresponsive genes. VIDEO ABSTRACT., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
17. MicroRNA-129-1 acts as tumour suppressor and induces cell cycle arrest of GBM cancer cells through targeting IGF2BP3 and MAPK1.
- Author
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Kouhkan F, Mobarra N, Soufi-Zomorrod M, Keramati F, Hosseini Rad SM, Fathi-Roudsari M, Tavakoli R, Hajarizadeh A, Ziaei S, Lahmi R, Hanif H, and Soleimani M
- Subjects
- Apoptosis genetics, Base Sequence, Binding Sites, Cell Line, Tumor, Computational Biology, Cyclin-Dependent Kinase 6 genetics, Databases, Genetic, Gene Expression Regulation, Neoplastic, Humans, Insulin-Like Growth Factor I genetics, MicroRNAs chemistry, Mitogen-Activated Protein Kinase 1 chemistry, Models, Biological, RNA Interference, RNA, Messenger chemistry, RNA, Messenger genetics, RNA-Binding Proteins chemistry, Brain Neoplasms genetics, Cell Cycle Checkpoints genetics, Genes, Tumor Suppressor, Glioblastoma genetics, MicroRNAs genetics, Mitogen-Activated Protein Kinase 1 genetics, RNA-Binding Proteins genetics
- Abstract
Background: MicroRNA-129-1 (miR-129-1) seems to behave as a tumour suppressor since its decreased expression is associated with different tumours such as glioblastoma multiforme (GBM). GBM is the most common form of brain tumours originating from glial cells. The impact of miR-129-1 downregulation on GBM pathogenesis has yet to be elucidated., Methods: MiR-129-1 was overexpressed in GBM cells, and its effect on proliferation was investigated by cell cycle assay. MiR-129-1 predicted targets (CDK6, IGF1, HDAC2, IGF2BP3 and MAPK1) were also evaluated by western blot and luciferase assay., Results: Restoration of miR-129-1 reduced cell proliferation and induced G1 accumulation, significantly. Several functional assays confirmed IGF2BP3, MAPK1 and CDK6 as targets of miR-129-1. Despite the fact that IGF1 expression can be suppressed by miR-129-1, through 3'-untranslated region complementary sequence, we could not find any association between IGF1 expression and GBM. MiR-129-1 expression inversely correlates with CDK6, IGF2BP3 and MAPK1 in primary clinical samples., Conclusion: This is the first study to propose miR129-1 as a negative regulator of IGF2BP3 and MAPK1 and also a cell cycle arrest inducer in GBM cells. Our data suggests miR-129-1 as a potential tumour suppressor and presents a rationale for the use of miR-129-1 as a novel strategy to improve treatment response in GBM., (Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/)
- Published
- 2016
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18. MiR-371-373 cluster acts as a tumor-suppressor-miR and promotes cell cycle arrest in unrestricted somatic stem cells.
- Author
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Langroudi L, Jamshidi-Adegani F, Shafiee A, Rad SM, Keramati F, Azadmanesh K, Arefian E, and Soleimani M
- Subjects
- Blotting, Western, Cell Cycle, Cell Differentiation, Cell Proliferation, Cells, Cultured, Gene Expression Profiling, Humans, Immunoenzyme Techniques, RNA, Messenger genetics, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Biomarkers, Tumor genetics, Cell Cycle Checkpoints genetics, Embryonic Stem Cells cytology, Embryonic Stem Cells metabolism, Genes, Tumor Suppressor, MicroRNAs genetics
- Abstract
Recent advances in small RNA research have implicated microRNAs (miRNAs) as important regulators of proliferation and development. The miR-371-373 cluster is prominently expressed in human embryonic stem cells (ESCs) and rapidly decreases after cell differentiation. MiR-371-373 cluster was investigated as one of the key factors of stem cell maintenance and pluripotency in unrestricted somatic stem cells (USSCs) using a lentivirus system. Gene expression showed a dual effect on proliferation, which revealed a transient cell cycle progression and consequent repression in pluripotency factors and cell cycle genes. Cell proliferation analysis with CFU, MTT, and DNA content assays further confirmed the dual effect of cluster after prolonged exposure. Analyzing the course of action, it seems that miR-371-373 cluster acts as an onco/tumor suppressor-miR. MiR371-373 cluster acts by modulating the function of these factors and limiting the excessive cell cycle propagation upon oncogenic stimuli to protect cells from replicative stress, but also activate CDK inhibitors and transcriptional repressors of the retinoblastoma family to cause cell cycle arrest. In contrast to the previous studies, we believe that miR-371-373 cluster functions as a self-renewal miRNA to induce and maintain the pluripotent state but also to potentially inhibit dysregulated proliferation through cell cycle arrest. It seems that miR-371-373 cluster presents with a dual effect in this cellular context which may possess different actions in various cells. This not only expands the basic knowledge of the cluster but may offer a great chance for therapeutic interventions.
- Published
- 2015
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19. 7SK small nuclear RNA inhibits cancer cell proliferation through apoptosis induction.
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Keramati F, Seyedjafari E, Fallah P, Soleimani M, and Ghanbarian H
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- Apoptosis genetics, HEK293 Cells, Humans, Neoplasms pathology, Positive Transcriptional Elongation Factor B biosynthesis, Positive Transcriptional Elongation Factor B genetics, Protein Binding, RNA, Long Noncoding genetics, RNA, Small Nuclear genetics, Cell Proliferation genetics, Neoplasms genetics, RNA, Small Nuclear metabolism, Transcription, Genetic
- Abstract
7SK small nuclear RNA (snRNA) is a 331-333-bp non-coding RNA, which recruits HEXIM 1/2 protein to inhibit positive elongation factor b (P-TEFb) activity. P-TEFb is an essential factor in alleviating promoter-proximal paused RNA polymerase II (Pol II) and initiating the productive elongation phase of gene transcription. Without this protein, Pol II will remain in its hypophosphorylated state, and no transcription occurs. In this study, we inhibited P-TEFb activity by over-expressing 7SK snRNA in human embryonic kidney (HEK) 293T cancer cell line. This inhibition led to a significant decrease in cell viability, which can be due to the transcription inhibition. Moreover, 7SK snRNA over-expression promoted apoptosis in cancerous cells. Our results suggest 7SK snRNA as a potential endogenous anti-cancer agent, and to the best of our knowledge, this is the first study that uses a long non-coding RNA's over-expression against cancer cell growth and proliferation.
- Published
- 2015
- Full Text
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