23 results on '"Khundrakpam B"'
Search Results
2. Brain status modeling with non-negative projective dictionary learning
- Author
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Zhang, M. (Mingli), Desrosiers, C. (Christian), Guo, Y. (Yuhong), Khundrakpam, B. (Budhachandra), Al-Sharif, N. (Noor), Kiar, G. (Greg), Valdes-Sosa, P. (Pedro), Poline, J.-B. (Jean-Baptiste), Evans, A. (Alan), Zhang, M. (Mingli), Desrosiers, C. (Christian), Guo, Y. (Yuhong), Khundrakpam, B. (Budhachandra), Al-Sharif, N. (Noor), Kiar, G. (Greg), Valdes-Sosa, P. (Pedro), Poline, J.-B. (Jean-Baptiste), and Evans, A. (Alan)
- Abstract
Accurate prediction of individuals’ brain age is critical to establish a baseline for normal brain development. This study proposes to model brain development with a novel non-negative projective dictionary learning (NPDL) approach, which learns a discriminative representation of multi-modal neuroimaging data for predicting brain age. Our approach encodes the variability of subjects in different age groups using separate dictionaries, projecting features into a low-dimensional manifold such that information is preserved only for the corresponding age group. The proposed framework improves upon previous discriminative dictionary learning methods by inco
- Published
- 2019
- Full Text
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3. Effect of Perturbations in Coriolis and Centrifugal Forces on the Nonlinear Stability of Equilibrium Point in Robe's Restricted Circular Three-Body Problem
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P. P. Hallan and Khundrakpam Binod Mangang
- Subjects
Astronomy ,QB1-991 - Abstract
The effect of perturbations in Coriolis and cetrifugal forces on the nonlinear stability of the equilibrium point of the Robe's (1977) restricted circular three-body problem has been studied when the density parameter K is zero. By applying Kolmogorov-Arnold-Moser (KAM) theory, it has been found that the equilibrium point is stable for all mass ratios μ in the range of linear stability 8/9+(2/3)((43/25)ϵ1−(10/3)ϵ)
- Published
- 2008
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4. Cortical thickness and childhood eating behaviors: differences according to sex and age, and relevance for eating disorders.
- Author
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Breton E, Khundrakpam B, Jeon S, Evans A, and Booij L
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- Humans, Male, Female, Child, Adolescent, Age Factors, Sex Factors, Emotions physiology, Child Behavior psychology, Feeding Behavior psychology, Cerebral Cortex diagnostic imaging, Cerebral Cortex pathology, Magnetic Resonance Imaging, Feeding and Eating Disorders psychology
- Abstract
Purpose: This study investigated the association between childhood eating behaviors and cortical morphology, in relation to sex and age, in a community sample., Methods: Neuroimaging data of 71 children (mean age = 9.9 ± 1.4 years; 39 boys/32 girls) were obtained from the Nathan Kline Institute-Rockland Sample. Emotional overeating, food fussiness, and emotional undereating were assessed using the Children's Eating Behavior Questionnaire. Cortical thickness was obtained at 81,924 vertices covering the entire cortex. Generalized Linear Mixed Models were used for statistical analysis., Results: There was a significant effect of sex in the association between cortical thickness and emotional overeating (localized at the right postcentral and bilateral superior parietal gyri). Boys with more emotional overeating presented cortical thickening, whereas the opposite was observed in girls (p < 0.05). Different patterns of association were identified between food fussiness and cortical thickness (p < 0.05). The left rostral middle frontal gyrus displayed a positive correlation with food fussiness from 6 to 8 years, but a negative correlation from 12 to 14 years. Emotional undereating was associated with cortical thickening at the left precuneus, left middle temporal gyrus, and left insula (p < 0.05) with no effect of sex or age., Conclusions: Leveraging on a community sample, findings support distinct patterns of associations between eating behaviors and cortical thickness, depending on sex and age., (© 2024. The Author(s).)
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- 2024
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5. Polygenic risk for depression and anterior and posterior hippocampal volume in children and adolescents.
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Hurtado H, Hansen M, Strack J, Vainik U, Decker AL, Khundrakpam B, Duncan K, Finn AS, Mabbott DJ, and Merz EC
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- Humans, Child, Female, Adolescent, Male, Magnetic Resonance Imaging, Hippocampus diagnostic imaging, Educational Status, Depression diagnostic imaging, Depression genetics, Genome-Wide Association Study
- Abstract
Background: Depression has frequently been associated with smaller hippocampal volume. The hippocampus varies in function along its anterior-posterior axis, with the anterior hippocampus more strongly associated with stress and emotion processing. The goals of this study were to examine the associations among parental history of anxiety/depression, polygenic risk scores for depression (PGS-DEP), and anterior and posterior hippocampal volumes in children and adolescents. To examine specificity to PGS-DEP, we examined associations of educational attainment polygenic scores (PGS-EA) with anterior and posterior hippocampal volume., Methods: Participants were 350 3- to 21-year-olds (46 % female). PGS-DEP and PGS-EA were computed based on recent, large-scale genome-wide association studies. High-resolution, T1-weighted magnetic resonance imaging (MRI) data were acquired, and a semi-automated approach was used to segment the hippocampus into anterior and posterior subregions., Results: Children and adolescents with higher polygenic risk for depression were more likely to have a parent with a history of anxiety/depression. Higher polygenic risk for depression was significantly associated with smaller anterior but not posterior hippocampal volume. PGS-EA was not associated with anterior or posterior hippocampal volumes., Limitations: Participants in these analyses were all of European ancestry., Conclusions: Polygenic risk for depression may lead to smaller anterior but not posterior hippocampal volume in children and adolescents, and there may be specificity of these effects to PGS-DEP rather than PGS-EA. These findings may inform the earlier identification of those in need of support and the design of more effective, personalized treatment strategies., Declarations of Interest: none., Declarations of Interest: None., Competing Interests: Declaration of competing interest The authors have no competing interests to declare., (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2024
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6. A critical role of brain network architecture in a continuum model of autism spectrum disorders spanning from healthy individuals with genetic liability to individuals with ASD.
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Khundrakpam B, Bhutani N, Vainik U, Gong J, Al-Sharif N, Dagher A, White T, and Evans AC
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- Humans, Male, Child, Adolescent, Magnetic Resonance Imaging methods, Brain, Neuroimaging, Autism Spectrum Disorder, Autistic Disorder
- Abstract
Studies have shown cortical alterations in individuals with autism spectrum disorders (ASD) as well as in individuals with high polygenic risk for ASD. An important addition to the study of altered cortical anatomy is the investigation of the underlying brain network architecture that may reveal brain-wide mechanisms in ASD and in polygenic risk for ASD. Such an approach has been proven useful in other psychiatric disorders by revealing that brain network architecture shapes (to an extent) the disorder-related cortical alterations. This study uses data from a clinical dataset-560 male subjects (266 individuals with ASD and 294 healthy individuals, CTL, mean age at 17.2 years) from the Autism Brain Imaging Data Exchange database, and data of 391 healthy individuals (207 males, mean age at 12.1 years) from the Pediatric Imaging, Neurocognition and Genetics database. ASD-related cortical alterations (group difference, ASD-CTL, in cortical thickness) and cortical correlates of polygenic risk for ASD were assessed, and then statistically compared with structural connectome-based network measures (such as hubs) using spin permutation tests. Next, we investigated whether polygenic risk for ASD could be predicted by network architecture by building machine-learning based prediction models, and whether the top predictors of the model were identified as disease epicenters of ASD. We observed that ASD-related cortical alterations as well as cortical correlates of polygenic risk for ASD implicated cortical hubs more strongly than non-hub regions. We also observed that age progression of ASD-related cortical alterations and cortical correlates of polygenic risk for ASD implicated cortical hubs more strongly than non-hub regions. Further investigation revealed that structural connectomes predicted polygenic risk for ASD (r = 0.30, p < 0.0001), and two brain regions (the left inferior parietal and left suparmarginal) with top predictive connections were identified as disease epicenters of ASD. Our study highlights a critical role of network architecture in a continuum model of ASD spanning from healthy individuals with genetic risk to individuals with ASD. Our study also highlights the strength of investigating polygenic risk scores in addition to multi-modal neuroimaging measures to better understand the interplay between genetic risk and brain alterations associated with ASD., (© 2022. The Author(s).)
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- 2023
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7. Educational attainment polygenic scores, socioeconomic factors, and cortical structure in children and adolescents.
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Merz EC, Strack J, Hurtado H, Vainik U, Thomas M, Evans A, and Khundrakpam B
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- Child, Adolescent, Male, Humans, Female, Genome-Wide Association Study, Multifactorial Inheritance, Educational Status, Socioeconomic Factors, Academic Success
- Abstract
Genome-wide polygenic scores for educational attainment (PGS-EA) and socioeconomic factors, which are correlated with each other, have been consistently associated with academic achievement and general cognitive ability in children and adolescents. Yet, the independent associations of PGS-EA and socioeconomic factors with specific underlying factors at the neural and neurocognitive levels are not well understood. The main goals of this study were to examine the unique contributions of PGS-EA and parental education to cortical structure and neurocognitive skills in children and adolescents, and the associations among PGS-EA, cortical structure, and neurocognitive skills. Participants were typically developing 3- to 21-year-olds (53% male; N = 391). High-resolution, T1-weighted magnetic resonance imaging data were acquired, and cortical thickness (CT) and surface area (SA) were measured. PGS-EA were computed based on the EA3 genome-wide association study of educational attainment. Participants completed executive function, vocabulary, and episodic memory tasks. Higher PGS-EA and parental education were independently and significantly associated with greater total SA and vocabulary. Higher PGS-EA was significantly associated with greater SA in the left medial orbitofrontal gyrus and inferior frontal gyrus, which was associated with higher executive function. Higher parental education was significantly associated with greater SA in the left parahippocampal gyrus after accounting for PGS-EA and total brain volume. These findings suggest that education-linked genetics may influence SA in frontal regions, leading to variability in executive function. Associations of parental education with cortical structure in children and adolescents remained significant after controlling for PGS-EA, a source of genetic confounding., (© 2022 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.)
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- 2022
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8. Understanding Heterogeneity in Autism Spectrum Disorder: A Methodological Shift in Neuroimaging Research From Investigating Group Differences to Individual Differences.
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Khundrakpam B, Tuerk C, and Booij L
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- Brain diagnostic imaging, Humans, Individuality, Neuroimaging, Autism Spectrum Disorder diagnosis
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- 2021
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9. Maturational trajectories of pericortical contrast in typical brain development.
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Drakulich S, Thiffault AC, Olafson E, Parent O, Labbe A, Albaugh MD, Khundrakpam B, Ducharme S, Evans A, Chakravarty MM, and Karama S
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- Adolescent, Adult, Child, Child, Preschool, Female, Humans, Longitudinal Studies, Magnetic Resonance Imaging, Male, Sex Factors, Young Adult, Cerebral Cortex anatomy & histology, Cerebral Cortex diagnostic imaging, Cerebral Cortex growth & development, Gray Matter anatomy & histology, Gray Matter diagnostic imaging, Gray Matter growth & development, Human Development physiology, White Matter anatomy & histology, White Matter diagnostic imaging, White Matter growth & development
- Abstract
In the last few years, a significant amount of work has aimed to characterize maturational trajectories of cortical development. The role of pericortical microstructure putatively characterized as the gray-white matter contrast (GWC) at the pericortical gray-white matter boundary and its relationship to more traditional morphological measures of cortical morphometry has emerged as a means to examine finer grained neuroanatomical underpinnings of cortical changes. In this work, we characterize the GWC developmental trajectories in a representative sample (n = 394) of children and adolescents (~4 to ~22 years of age), with repeated scans (1-3 scans per subject, total scans n = 819). We tested whether linear, quadratic, or cubic trajectories of contrast development best described changes in GWC. A best-fit model was identified vertex-wise across the whole cortex via the Akaike Information Criterion (AIC). GWC across nearly the whole brain was found to significantly change with age. Cubic trajectories were likeliest for 63% of vertices, quadratic trajectories were likeliest for 20% of vertices, and linear trajectories were likeliest for 16% of vertices. A main effect of sex was observed in some regions, where males had a higher GWC than females. However, no sex by age interactions were found on GWC. In summary, our results suggest a progressive decrease in GWC at the pericortical boundary throughout childhood and adolescence. This work contributes to efforts seeking to characterize typical, healthy brain development and, by extension, can help elucidate aberrant developmental trajectories., Competing Interests: Declaration of Competing Interest None., (Copyright © 2021. Published by Elsevier Inc.)
- Published
- 2021
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10. Distinct influence of parental occupation on cortical thickness and surface area in children and adolescents: Relation to self-esteem.
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Khundrakpam B, Choudhury S, Vainik U, Al-Sharif N, Bhutani N, Jeon S, Gold I, and Evans A
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- Adolescent, Adult, Age Factors, Cerebral Cortex diagnostic imaging, Child, Child, Preschool, Educational Status, Female, Humans, Income, Magnetic Resonance Imaging, Male, Occupations, Parents, Social Class, Young Adult, Cerebral Cortex anatomy & histology, Human Development physiology, Self Concept, Socioeconomic Factors
- Abstract
Studies of socioeconomic disparities have largely focused on correlating brain measures with either composite measure of socioeconomic status (SES), or its components-family income or parental education, giving little attention to the component of parental occupation. Emerging evidence suggests that parental occupation may be an important and neglected indicator of childhood and adolescent SES compared to absolute measures of material resources or academic attainment because, while related, it may more precisely capture position in social hierarchy and related health outcomes. On the other hand, although cortical thickness and surface area are brain measures with distinct genetic and developmental origins, large-scale neuroimaging studies investigating regional differences in interaction of the composite measure of SES or its components with cortical thickness and surface area are missing. We set out to fill this gap, focusing specifically on the role of parental occupation on cortical thickness and surface area by analyzing magnetic resonance imaging scans from 704 healthy individuals (age = 3-21 years). We observed spatially distributed patterns of (parental occupation × age
2 ) interaction with cortical thickness (localized at the left caudal middle frontal, the left inferior parietal and the right superior parietal) and surface area (localized at the left orbitofrontal cortex), indicating independent sources of variability. Further, with decreased cortical thickness, children from families with lower parental occupation exhibited lower self-esteem. Our findings demonstrate distinct influence of parental occupation on cortical thickness and surface area in children and adolescents, potentially reflecting different neurobiological mechanisms by which parental occupation may impact brain development., (© 2020 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.)- Published
- 2020
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11. Altered hippocampal centrality and dynamic anatomical covariance of intracortical microstructure in first episode psychosis.
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Makowski C, Lewis JD, Khundrakpam B, Tardif CL, Palaniyappan L, Joober R, Malla A, Shah JL, Bodnar M, Chakravarty MM, Evans AC, and Lepage M
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- Adolescent, Adult, Cerebral Cortex physiology, Female, Follow-Up Studies, Hippocampus physiology, Humans, Longitudinal Studies, Magnetic Resonance Imaging methods, Male, Nerve Net physiology, Psychotic Disorders psychology, Verbal Learning physiology, Cerebral Cortex diagnostic imaging, Hippocampus diagnostic imaging, Nerve Net diagnostic imaging, Psychotic Disorders diagnostic imaging
- Abstract
Hippocampal circuitry has been posited to be fundamental to positive symptoms in psychosis, but its contributions to other factors important for outcome remains unclear. We hypothesized that longitudinal changes in the hippocampal circuit and concomitant changes of intracortical microstructure are altered in first episode psychosis (FEP) patients and that such changes are associated with negative symptoms and verbal memory. Longitudinal brain scans (2-4 visits over 3-15 months) were acquired for 27 FEP and 29 age- and sex-matched healthy controls. Quantitative T1 maps, sensitive to myelin content, were used to sample the microstructure of the hippocampal subfields and output circuitry (fimbria, alveus, fornix, mammillary bodies), and intracortical regions. Dynamic anatomical covariance in pair-wise regional trajectories were assessed for each subject, and graph theory was used to calculate a participation coefficient metric that quantifies the similarity/divergence between hippocampal and intracortical microstructure. The mean participation coefficient of the hippocampus was significantly reduced in FEP patients compared with controls, reflecting differences in output hippocampal regions. Importantly, lower participation coefficient of the hippocampal circuit was associated with worse negative symptoms, a relationship that was mediated by changes in verbal memory. This study provides evidence for reduced hippocampal centrality in FEP and concomitant changes in intracortical anatomy. Myelin-rich output regions of the hippocampus may be an important biological trigger in early psychosis, with cascading effects on broader cortical networks and resultant clinical profiles., (© 2020 Wiley Periodicals, Inc.)
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- 2020
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12. Neural correlates of polygenic risk score for autism spectrum disorders in general population.
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Khundrakpam B, Vainik U, Gong J, Al-Sharif N, Bhutani N, Kiar G, Zeighami Y, Kirschner M, Luo C, Dagher A, and Evans A
- Abstract
Autism spectrum disorder is a highly prevalent and highly heritable neurodevelopmental condition, but studies have mostly taken traditional categorical diagnosis approach (yes/no for autism spectrum disorder). In contrast, an emerging notion suggests a continuum model of autism spectrum disorder with a normal distribution of autistic tendencies in the general population, where a full diagnosis is at the severe tail of the distribution. We set out to investigate such a viewpoint by investigating the interaction of polygenic risk scores for autism spectrum disorder and Age
2 on neuroimaging measures (cortical thickness and white matter connectivity) in a general population ( n = 391, with age ranging from 3 to 21 years from the Pediatric Imaging, Neurocognition and Genetics study). We observed that children with higher polygenic risk for autism spectrum disorder exhibited greater cortical thickness for a large age span starting from 3 years up to ∼14 years in several cortical regions localized in bilateral precentral gyri and the left hemispheric postcentral gyrus and precuneus. In an independent case-control dataset from the Autism Brain Imaging Data Exchange ( n = 560), we observed a similar pattern: children with autism spectrum disorder exhibited greater cortical thickness starting from 6 years onwards till ∼14 years in wide-spread cortical regions including (the ones identified using the general population). We also observed statistically significant regional overlap between the two maps, suggesting that some of the cortical abnormalities associated with autism spectrum disorder overlapped with brain changes associated with genetic vulnerability for autism spectrum disorder in healthy individuals. Lastly, we observed that white matter connectivity between the frontal and parietal regions showed significant association with polygenic risk for autism spectrum disorder, indicating that not only the brain structure, but the white matter connectivity might also show a predisposition for the risk of autism spectrum disorder. Our findings showed that the fronto-parietal thickness and connectivity are dimensionally related to genetic risk for autism spectrum disorder in general population and are also part of the cortical abnormalities associated with autism spectrum disorder. This highlights the necessity of considering continuum models in studying the aetiology of autism spectrum disorder using polygenic risk scores and multimodal neuroimaging., (© The Author(s) (2020). Published by Oxford University Press on behalf of the Guarantors of Brain.)- Published
- 2020
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13. Brain status modeling with non-negative projective dictionary learning.
- Author
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Zhang M, Desrosiers C, Guo Y, Khundrakpam B, Al-Sharif N, Kiar G, Valdes-Sosa P, Poline JB, and Evans A
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- Adolescent, Adult, Age Factors, Brain diagnostic imaging, Cerebral Cortex diagnostic imaging, Child, Child, Preschool, Diffusion Tensor Imaging methods, Female, Humans, Male, Nerve Net diagnostic imaging, Nerve Net growth & development, Sex Factors, Young Adult, Brain growth & development, Cerebral Cortex growth & development, Magnetic Resonance Imaging methods, Models, Theoretical, Neuroimaging methods
- Abstract
Accurate prediction of individuals' brain age is critical to establish a baseline for normal brain development. This study proposes to model brain development with a novel non-negative projective dictionary learning (NPDL) approach, which learns a discriminative representation of multi-modal neuroimaging data for predicting brain age. Our approach encodes the variability of subjects in different age groups using separate dictionaries, projecting features into a low-dimensional manifold such that information is preserved only for the corresponding age group. The proposed framework improves upon previous discriminative dictionary learning methods by incorporating orthogonality and non-negativity constraints, which remove representation redundancy and perform implicit feature selection. We study brain development on multi-modal brain imaging data from the PING dataset (N = 841, age = 3-21 years). The proposed analysis uses our NDPL framework to predict the age of subjects based on cortical measures from T1-weighted MRI and connectome from diffusion weighted imaging (DWI). We also investigate the association between age prediction and cognition, and study the influence of gender on prediction accuracy. Experimental results demonstrate the usefulness of NDPL for modeling brain development., (Copyright © 2019. Published by Elsevier Inc.)
- Published
- 2020
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14. An analytic approach for interpretable predictive models in high-dimensional data in the presence of interactions with exposures.
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Bhatnagar SR, Yang Y, Khundrakpam B, Evans AC, Blanchette M, Bouchard L, and Greenwood CMT
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- Adolescent, Algorithms, Child, Child, Preschool, Cluster Analysis, Computer Simulation, Databases as Topic, Epigenesis, Genetic, Gene Expression Regulation, Humans, Magnetic Resonance Imaging, Disease genetics, Models, Genetic
- Abstract
Predicting a phenotype and understanding which variables improve that prediction are two very challenging and overlapping problems in the analysis of high-dimensional (HD) data such as those arising from genomic and brain imaging studies. It is often believed that the number of truly important predictors is small relative to the total number of variables, making computational approaches to variable selection and dimension reduction extremely important. To reduce dimensionality, commonly used two-step methods first cluster the data in some way, and build models using cluster summaries to predict the phenotype. It is known that important exposure variables can alter correlation patterns between clusters of HD variables, that is, alter network properties of the variables. However, it is not well understood whether such altered clustering is informative in prediction. Here, assuming there is a binary exposure with such network-altering effects, we explore whether the use of exposure-dependent clustering relationships in dimension reduction can improve predictive modeling in a two-step framework. Hence, we propose a modeling framework called ECLUST to test this hypothesis, and evaluate its performance through extensive simulations. With ECLUST, we found improved prediction and variable selection performance compared to methods that do not consider the environment in the clustering step, or to methods that use the original data as features. We further illustrate this modeling framework through the analysis of three data sets from very different fields, each with HD data, a binary exposure, and a phenotype of interest. Our method is available in the eclust CRAN package., (© 2018 WILEY PERIODICALS, INC.)
- Published
- 2018
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15. Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data.
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Moradi E, Khundrakpam B, Lewis JD, Evans AC, and Tohka J
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- Adolescent, Adult, Autism Spectrum Disorder diagnostic imaging, Autism Spectrum Disorder physiopathology, Child, Databases, Factual, Female, Humans, Male, Middle Aged, Prognosis, Young Adult, Autism Spectrum Disorder diagnosis, Cerebral Cortex diagnostic imaging, Machine Learning, Magnetic Resonance Imaging methods, Severity of Illness Index
- Abstract
Machine learning approaches have been widely used for the identification of neuropathology from neuroimaging data. However, these approaches require large samples and suffer from the challenges associated with multi-site, multi-protocol data. We propose a novel approach to address these challenges, and demonstrate its usefulness with the Autism Brain Imaging Data Exchange (ABIDE) database. We predict symptom severity based on cortical thickness measurements from 156 individuals with autism spectrum disorder (ASD) from four different sites. The proposed approach consists of two main stages: a domain adaptation stage using partial least squares regression to maximize the consistency of imaging data across sites; and a learning stage combining support vector regression for regional prediction of severity with elastic-net penalized linear regression for integrating regional predictions into a whole-brain severity prediction. The proposed method performed markedly better than simpler alternatives, better with multi-site than single-site data, and resulted in a considerably higher cross-validated correlation score than has previously been reported in the literature for multi-site data. This demonstration of the utility of the proposed approach for detecting structural brain abnormalities in ASD from the multi-site, multi-protocol ABIDE dataset indicates the potential of designing machine learning methods to meet the challenges of agglomerative data., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2017
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16. Scaling in topological properties of brain networks.
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Singh SS, Khundrakpam B, Reid AT, Lewis JD, Evans AC, Ishrat R, Sharma BI, and Singh RK
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- Animals, Brain Mapping, Caenorhabditis elegans, Cats, Fractals, Humans, Macaca, Models, Neurological, Brain physiology, Nerve Net
- Abstract
The organization in brain networks shows highly modular features with weak inter-modular interaction. The topology of the networks involves emergence of modules and sub-modules at different levels of constitution governed by fractal laws that are signatures of self-organization in complex networks. The modular organization, in terms of modular mass, inter-modular, and intra-modular interaction, also obeys fractal nature. The parameters which characterize topological properties of brain networks follow one parameter scaling theory in all levels of network structure, which reveals the self-similar rules governing the network structure. Further, the calculated fractal dimensions of brain networks of different species are found to decrease when one goes from lower to higher level species which implicates the more ordered and self-organized topography at higher level species. The sparsely distributed hubs in brain networks may be most influencing nodes but their absence may not cause network breakdown, and centrality parameters characterizing them also follow one parameter scaling law indicating self-similar roles of these hubs at different levels of organization in brain networks. The local-community-paradigm decomposition plot and calculated local-community-paradigm-correlation co-efficient of brain networks also shows the evidence for self-organization in these networks.
- Published
- 2016
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17. A cross-modal, cross-species comparison of connectivity measures in the primate brain.
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Reid AT, Lewis J, Bezgin G, Khundrakpam B, Eickhoff SB, McIntosh AR, Bellec P, and Evans AC
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- Adolescent, Adult, Aged, Aged, 80 and over, Animals, Brain physiology, Child, Cluster Analysis, Diffusion Magnetic Resonance Imaging, Female, Humans, Image Processing, Computer-Assisted, Macaca mulatta, Magnetic Resonance Imaging, Male, Middle Aged, Neural Pathways physiology, Primates, Species Specificity, Young Adult, Brain anatomy & histology, Connectome methods, Neural Pathways anatomy & histology
- Abstract
In systems neuroscience, the term "connectivity" has been defined in numerous ways, according to the particular empirical modality from which it is derived. Due to large differences in the phenomena measured by these modalities, the assumptions necessary to make inferences about axonal connections, and the limitations accompanying each, brain connectivity remains an elusive concept. Despite this, only a handful of studies have directly compared connectivity as inferred from multiple modalities, and there remains much ambiguity over what the term is actually referring to as a biological construct. Here, we perform a direct comparison based on the high-resolution and high-contrast Enhanced Nathan Klein Institute (NKI) Rockland Sample neuroimaging data set, and the CoCoMac database of tract tracing studies. We compare four types of commonly-used primate connectivity analyses: tract tracing experiments, compiled in CoCoMac; group-wise correlation of cortical thickness; tractographic networks computed from diffusion-weighted MRI (DWI); and correlational networks obtained from resting-state BOLD (fMRI). We find generally poor correspondence between all four modalities, in terms of correlated edge weights, binarized comparisons of thresholded networks, and clustering patterns. fMRI and DWI had the best agreement, followed by DWI and CoCoMac, while other comparisons showed striking divergence. Networks had the best correspondence for local ipsilateral and homotopic contralateral connections, and the worst correspondence for long-range and heterotopic contralateral connections. k-Means clustering highlighted the lowest cross-modal and cross-species consensus in lateral and medial temporal lobes, anterior cingulate, and the temporoparietal junction. Comparing the NKI results to those of the lower resolution/contrast International Consortium for Brain Imaging (ICBM) dataset, we find that the relative pattern of intermodal relationships is preserved, but the correspondence between human imaging connectomes is substantially better for NKI. These findings caution against using "connectivity" as an umbrella term for results derived from single empirical modalities, and suggest that any interpretation of these results should account for (and ideally help explain) the lack of multimodal correspondence., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2016
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18. Aberrant Topological Patterns of Structural Cortical Networks in Psychogenic Erectile Dysfunction.
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Zhao L, Guan M, Zhu X, Karama S, Khundrakpam B, Wang M, Dong M, Qin W, Tian J, Evans AC, and Shi D
- Abstract
Male sexual arousal (SA) has been known as a multidimensional experience involving closely interrelated and coordinated neurobehavioral components that rely on widespread brain regions. Recent functional neuroimaging studies have shown relation between abnormal/altered dynamics in these circuits and male sexual dysfunction. However, alterations in the topological organization of structural brain networks in male sexual dysfunction are still unclear. Here, we used graph theory to investigate the topological properties of large-scale structural brain networks, which were constructed using inter-regional correlations of cortical thickness between 78 cortical regions in 40 patients with psychogenic erectile dysfunction (pED) and 39 normal controls. Compared with normal controls, pED patients exhibited a less optimal global topological organization with reduced global and increased local efficiencies. Our results suggest disrupted neural integration among distant brain regions in pED patients, consistent with previous reports of impaired white matter structure and abnormal functional integrity in pED. Additionally, disrupted global network topology in pED was observed to be primarily relevant to altered subnetwork and nodal properties within the networks mediating the cognitive, motivational and inhibitory processes of male SA, possibly indicating disrupted integration of these networks in the whole brain networks and might account for pED patients' abnormal cognitive, motivational and inhibitory processes for male SA. In total, our findings provide evidence for disrupted integrity in large-scale brain networks underlying the neurobehavioral processes of male SA in pED and provide new insights into the understanding of the pathophysiological mechanisms of pED.
- Published
- 2015
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19. Structural insights into aberrant cortical morphometry and network organization in psychogenic erectile dysfunction.
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Zhao L, Guan M, Zhang X, Karama S, Khundrakpam B, Wang M, Dong M, Qin W, Tian J, Evans AC, and Shi D
- Subjects
- Adult, Erectile Dysfunction psychology, Humans, Magnetic Resonance Imaging, Male, Cerebral Cortex pathology, Erectile Dysfunction pathology, Nerve Net pathology
- Abstract
Functional neuroimaging studies have revealed abnormal brain dynamics of male sexual arousal (SA) in psychogenic erectile dysfunction (pED). However, the neuroanatomical correlates of pED are still unclear. In this work, we obtained cortical thickness (CTh) measurements from structural magnetic resonance images of 40 pED patients and 39 healthy control subjects. Abnormalities in CTh related to pED were explored using a scale space search based brain morphometric analysis. Organizations of brain structural covariance networks were analyzed as well. Compared with healthy men, pED patients showed significantly decreased CTh in widespread cortical regions, most of which were previously reported to show abnormal dynamics of male SA in pED, such as the medial prefrontal, orbitofrontal, cingulate, inferotemporal, and insular cortices. CTh reductions in these areas were found to be significantly correlated with male sexual functioning degradation. Moreover, pED patients showed decreased interregional CTh correlations from the right lateral orbitofrontal cortex to the right supramarginal gyrus and the left angular cortex, implying disassociations between the cognitive, motivational, and inhibitory networks of male SA in pED. This work provides structural insights on the complex phenomenon of psychogenic sexual dysfunction in men, and suggests a specific vulnerability factor, possibly as an extra "organic" factor, that may play an important role in pED., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2015
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20. Cortical Structural Connectivity Alterations in Primary Insomnia: Insights from MRI-Based Morphometric Correlation Analysis.
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Zhao L, Wang E, Zhang X, Karama S, Khundrakpam B, Zhang H, Guan M, Wang M, Cheng J, Shi D, Evans AC, and Li Y
- Subjects
- Adult, Cohort Studies, Female, Humans, Male, Middle Aged, Young Adult, Cerebral Cortex physiology, Magnetic Resonance Imaging methods, Nerve Net physiology, Sleep Initiation and Maintenance Disorders physiopathology
- Abstract
The etiology and maintenance of insomnia are proposed to be associated with increased cognitive and physiological arousal caused by acute stressors and associated cognitive rumination. A core feature of such hyperarousal theory of insomnia involves increased sensory processing that interferes with the onset and maintenance of sleep. In this work, we collected structural magnetic resonance imaging data from 35 patients with primary insomnia and 35 normal sleepers and applied structural covariance analysis to investigate whether insomnia is associated with disruptions in structural brain networks centered at the sensory regions (primary visual, primary auditory, and olfactory cortex). As expected, insomnia patients showed increased structural covariance in cortical thickness between sensory and motor regions. We also observed trends of increased covariance between sensory regions and the default-mode network, and the salience network regions, and trends of decreased covariance between sensory regions and the frontoparietal working memory network regions, in insomnia patients. The observed changes in structural covariance tended to correlated with poor sleep quality. Our findings support previous functional neuroimaging studies and provide novel insights into variations in brain network configuration that may be involved in the pathophysiology of insomnia.
- Published
- 2015
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- View/download PDF
21. Heritable changes in regional cortical thickness with age.
- Author
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Chouinard-Decorte F, McKay DR, Reid A, Khundrakpam B, Zhao L, Karama S, Rioux P, Sprooten E, Knowles E, Kent JW Jr, Curran JE, Göring HH, Dyer TD, Olvera RL, Kochunov P, Duggirala R, Fox PT, Almasy L, Blangero J, Bellec P, Evans AC, and Glahn DC
- Subjects
- Adolescent, Adult, Aged, Family, Female, Genetic Pleiotropy, Hispanic or Latino, Humans, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods, Male, Middle Aged, Organ Size, Phenotype, Young Adult, Aging genetics, Aging pathology, Cerebral Cortex pathology
- Abstract
It is now well established that regional indices of brain structure such as cortical thickness, surface area or grey matter volume exhibit spatially variable patterns of heritability. However, a recent study found these patterns to change with age during development, a result supported by gene expression studies. Changes in heritability have not been investigated in adulthood so far and could have important implications in the study of heritability and genetic correlations in the brain as well as in the discovery of specific genes explaining them. Herein, we tested for genotype by age (G ×A) interactions, an extension of genotype by environment interactions, through adulthood and healthy aging in 902 subjects from the Genetics of Brain Structure (GOBS) study. A "jackknife" based method for the analysis of stable cortical thickness clusters (JASC) and scale selection is also introduced. Although additive genetic variance remained constant throughout adulthood, we found evidence for incomplete pleiotropy across age in the cortical thickness of paralimbic and parieto-temporal areas. This suggests that different genetic factors account for cortical thickness heritability at different ages in these regions.
- Published
- 2014
- Full Text
- View/download PDF
22. Cortical thickness, cortico-amygdalar networks, and externalizing behaviors in healthy children.
- Author
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Ameis SH, Ducharme S, Albaugh MD, Hudziak JJ, Botteron KN, Lepage C, Zhao L, Khundrakpam B, Collins DL, Lerch JP, Wheeler A, Schachar R, Evans AC, and Karama S
- Subjects
- Adolescent, Age Factors, Child, Female, Functional Laterality, Humans, Image Processing, Computer-Assisted, Magnetic Resonance Imaging, Male, Neural Pathways growth & development, Neural Pathways physiology, Psychological Tests, Amygdala growth & development, Cerebral Cortex anatomy & histology, Cerebral Cortex growth & development, Child Behavior
- Abstract
Background: Fronto-amygdalar networks are implicated in childhood psychiatric disorders characterized by high rates of externalizing (aggressive, noncompliant, oppositional) behavior. Although externalizing behaviors are distributed continuously across clinical and nonclinical samples, little is known about how brain variations may confer risk for problematic behavior. Here, we studied cortical thickness, amygdala volume, and cortico-amygdalar network correlates of externalizing behavior in a large sample of healthy children., Methods: Two hundred ninety-seven healthy children (6-18 years; mean = 12 ± 3 years), with 517 magnetic resonance imaging scans, from the National Institutes of Health Magnetic Resonance Imaging Study of Normal Brain Development, were studied. Relationships between externalizing behaviors (measured with the Child Behavior Checklist) and cortical thickness, amygdala volume, and cortico-amygdalar structural networks were examined using first-order linear mixed-effects models, after controlling for age, sex, scanner, and total brain volume. Results significant at p ≤ .05, following multiple comparison correction, are reported., Results: Left orbitofrontal, right retrosplenial cingulate, and medial temporal cortex thickness were negatively correlated with externalizing behaviors. Although amygdala volume alone was not correlated with externalizing behaviors, an orbitofrontal cortex-amygdala network predicted rates of externalizing behavior. Children with lower levels of externalizing behaviors exhibited positive correlations between orbitofrontal cortex and amygdala structure, while these regions were not correlated in children with higher levels of externalizing behavior., Conclusions: Our findings identify key cortical nodes in frontal, cingulate, and temporal cortex associated with externalizing behaviors in children; and indicate that orbitofrontal-amygdala network properties may influence externalizing behaviors, along a continuum and across healthy and clinical samples., (Copyright © 2014 Society of Biological Psychiatry. Published by Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
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23. Anatomical substrates of the alerting, orienting and executive control components of attention: focus on the posterior parietal lobe.
- Author
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Yin X, Zhao L, Xu J, Evans AC, Fan L, Ge H, Tang Y, Khundrakpam B, Wang J, and Liu S
- Subjects
- Adolescent, Behavior physiology, Diffusion, Diffusion Tensor Imaging, Female, Humans, Male, Young Adult, Attention physiology, Executive Function physiology, Parietal Lobe anatomy & histology, Parietal Lobe physiology
- Abstract
Both neuropsychological and functional neuroimaging studies have identified that the posterior parietal lobe (PPL) is critical for the attention function. However, the unique role of distinct parietal cortical subregions and their underlying white matter (WM) remains in question. In this study, we collected both magnetic resonance imaging and diffusion tensor imaging (DTI) data in normal participants, and evaluated their attention performance using attention network test (ANT), which could isolate three different attention components: alerting, orienting and executive control. Cortical thickness, surface area and DTI parameters were extracted from predefined PPL subregions and correlated with behavioural performance. Tract-based spatial statistics (TBSS) was used for the voxel-wise statistical analysis. Results indicated structure-behaviour relationships on multiple levels. First, a link between the cortical thickness and WM integrity of the right inferior parietal regions and orienting performance was observed. Specifically, probabilistic tractography demonstrated that the integrity of WM connectivity between the bilateral inferior parietal lobules mediated the orienting performance. Second, the scores of executive control were significantly associated with the WM diffusion metrics of the right supramarginal gyrus. Finally, TBSS analysis revealed that alerting performance was significant correlated with the fractional anisotropy of local WM connecting the right thalamus and supplementary motor area. We conclude that distinct areas and features within PPL are associated with different components of attention. These findings could yield a more complete understanding of the nature of the PPL contribution to visuospatial attention.
- Published
- 2012
- Full Text
- View/download PDF
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