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We prove a conjecture of Gao and Kitaev on Wilf-equivalence of sets of patterns {12345,12354} and {45123,45213} that extends the list of 10 related conjectures proved in the literature in a series of papers. To achieve our goals, we prove generalized versions of shape-Wilf-equivalence results of Backelin, West, and Xin and use a particular result on shape-Wilf-equivalence of monotone patterns. We also derive general results on shape-Wilf-equivalence of certain classes of partially ordered patterns and use their specialization (also appearing in a paper by Bloom and Elizalde) as an essential piece in proving the conjecture. Our results allow us to show (shape-)Wilf-equivalence of large classes of sets of patterns, including 11 out of 12 classes found by Bean et al. in relation to the conjecture., Comment: 9 pages, 3 figures

We derive functional equations for distributions of six classical statistics (ascents, descents, left-to-right maxima, right-to-left maxima, left-to-right minima, and right-to-left minima) on separable and irreducible separable permutations. The equations are used to find a third degree equation for joint distribution of ascents and descents on separable permutations that generalizes the respective known result for the descent distribution. Moreover, our general functional equations allow us to derive explicitly (joint) distribution of any subset of maxima and minima statistics on irreducible, reducible and all separable permutations. In particular, there are two equivalence classes of distributions of a pair of maxima or minima statistics. Finally, we present three unimodality conjectures about distributions of statistics on separable permutations., Comment: To appear in Discrete Applied Mathematics

The 3D folding of a mammalian gene can be studied by a polymer model, where the chromatin fibre is represented by a semiflexible polymer which interacts with multivalent proteins, representing complexes of DNA-binding transcription factors and RNA polymerases. This physical model leads to the natural emergence of clusters of proteins and binding sites, accompanied by the folding of chromatin into a set of topologies, each associated with a different network of loops. Here we combine numerics and analytics to first classify these networks and then find their relative importance or statistical weight, when the properties of the underlying polymer are those relevant to chromatin. Unlike polymer networks previously studied, our chromatin networks have finite average distances between successive binding sites, and this leads to giant differences between the weights of topologies with the same number of edges and nodes but different wiring. These weights strongly favour rosette-like structures with a local cloud of loops with respect to more complicated non-local topologies. Our results suggest that genes should overwhelmingly fold into a small fraction of all possible 3D topologies, which can be robustly characterised by the framework we propose here., Comment: 8 pages, 2 figures

Polymer physics models suggest that chromatin spontaneously folds into loop networks with transcription units (TUs), such as enhancers and promoters, as anchors. Here we use combinatoric arguments to enumerate the emergent chromatin loop networks, both in the case where TUs are labelled and where they are unlabelled. We then combine these mathematical results with those of computer simulations aimed at finding the inter-TU energy required to form a target loop network. We show that different topologies are vastly different in terms of both their combinatorial weight and energy of formation. We explain the latter result qualitatively by computing the topological weight of a given network -- i.e., its partition function in statistical mechanics language -- in the approximation where excluded volume interactions are neglected. Our results show that networks featuring local loops are statistically more likely with respect to networks including more non-local contacts. We suggest our classification of loop networks, together with our estimate of the combinatorial and topological weight of each network, will be relevant to catalogue 3D structures of chromatin fibres around eukaryotic genes, and to estimate their relative frequency in both simulations and experiments., Comment: 19 pages, 11 figures

Word-representable graphs, which are the same as semi-transitively orientable graphs, generalize several fundamental classes of graphs. In this paper we propose a novel approach to study word-representability of graphs using a technique of homomorphisms. As a proof of concept, we apply our method to show word-representability of the simplified graph of overlapping permutations that we introduce in this paper. For another application, we obtain results on word-representability of certain subgraphs of simplified de Bruijn graphs that were introduced recently by Petyuk and studied in the context of word-representability., Comment: To appear in Discrete Applied Mathematics

A partial order $\prec$ on $[n]$ is naturally labelled (NL) if $x\prec y$ implies $x

Finding distributions of permutation statistics over pattern-avoiding classes of permutations attracted much attention in the literature. In particular, Bukata et al. found distributions of ascents and descents on permutations avoiding any two patterns of length 3. In this paper, we generalize these results in two different ways: we find explicit formulas for the joint distribution of six statistics (asc, des, lrmax, lrmin, rlmax, rlmin), and also explicit formulas for the joint distribution of four statistics (asc, des, MNA, MND) on these permutations in all cases. The latter result also extends the recent studies by Kitaev and Zhang of the statistics MNA and MND (related to non-overlapping occurrences of ascents and descents) on stack-sortable permutations. All multivariate generating functions in our paper are rational, and we provide combinatorial proofs of five equidistribution results that can be derived from the generating functions., Comment: 25 pages

The Eulerian polynomials $A_n(x)$ give the distribution of descents over permutations. It is also known that the distribution of descents over stack-sortable permutations (i.e. permutations sortable by a certain algorithm whose internal storage is limited to a single stack data structure) is given by the Narayana numbers $\frac{1}{n}{n \choose k}{n \choose k+1}$. On the other hand, as a corollary of a much more general result, the distribution of the statistic ``maximum number of non-overlapping descents'', MND, over all permutations is given by $\sum_{n,k \geq 0}D_{n,k}x^k\ frac{t^n}{n!}=\frac{e^t}{1-x(1+(t-1)e^t)}$. In this paper, we show that the distribution of MND over stack-sortable permutations is given by $\frac{1}{n+1}{n+1\choose 2k+1}{n+k \choose k}$. We give two proofs of the result via bijections with rooted plane (binary) trees allowing us to control MND. Moreover, we show combinatorially that MND is equidistributed with the statistic MNA, the maximum number of non-overlapping ascents, over stack-sortable permutations. The last fact is obtained by establishing an involution on stack-sortable permutations that gives equidistribution of 8 statistics., Comment: To appear in Discrete Applied Mathematics

This paper introduces the notion of mesh patterns in multidimensional permutations and initiates a systematic study of singleton mesh patterns (SMPs), which are multidimensional mesh patterns of length 1. A pattern is avoidable if there exist arbitrarily large permutations that do not contain it. As our main result, we give a complete characterization of avoidable SMPs using an invariant of a pattern that we call its rank. We show that determining avoidability for a $d$-dimensional SMP $P$ of cardinality $k$ is an $O(d\cdot k)$ problem, while determining rank of $P$ is an NP-complete problem. Additionally, using the notion of a minus-antipodal pattern, we characterize SMPs which occur at most once in any $d$-dimensional permutation. Lastly, we provide a number of enumerative results regarding the distributions of certain general projective, plus-antipodal, minus-antipodal and hyperplane SMPs., Comment: Theorem 12 and Conjecture 1 are replaced by a more general Theorem 12; the paper is to appear in JCTA

A crucial permutation is a permutation that avoids a given set of prohibitions, but any of its extensions, in an allowable way, results in a prohibition being introduced. In this paper, we introduce five natural types of crucial permutations with respect to monotone patterns, notably quadrocrucial permutations that are linked most closely to Erd\H{o}s-Szekeres extremal permutations. The way we define right-crucial and bicrucial permutations is consistent with the definition of respective permutations studied in the literature in the contexts of other prohibitions. For each of the five types, we provide its characterization in terms of Young tableaux via the RSK correspondence. Moreover, we use the characterizations to prove that the number of such permutations of length $n$ is growing when $n\to\infty$, and to enumerate minimal crucial permutations in all but one case. We also provide other enumerative results.

Partially ordered patterns (POPs) generalize the notion of classical patterns studied in the literature in the context of permutations, words, compositions and partitions. In this paper, we give a number of general, and specific enumerative results for POPs in permutations defined by bipartite graphs, substantially extending the list of known results in this direction. In particular, we completely characterize the Wilf-equivalence for patterns defined by the N-shape posets.

A directed graph is semi-transitive if and only if it is acyclic and for any directed path $u_1\rightarrow u_2\rightarrow \cdots \rightarrow u_t$, $t \geq 2$, either there is no edge from $u_1$ to $u_t$ or all edges $u_i\rightarrow u_j$ exist for $1 \leq i < j \leq t$. Recognizing semi-transitive orientability of a graph is an NP-complete problem. A split graph is a graph in which the vertices can be partitioned into a clique and an independent set. Semi-transitive orientability of spit graphs was recently studied in the literature. The main result in this paper is proving that recognition of semi-transitive orientability of split graphs can be done in a polynomial time. We also characterize, in terms of minimal forbidden induced subgraphs, semi-transitively orientable split graphs with the size of the independent set at most 3, hence extending the known classification of such graphs with the size of the clique at most 5.

A graph is word-representable if it can be represented in a certain way using alternation of letters in words. Word-representable graphs generalise several important and well-studied classes of graphs, and they can be characterised by semi-transitive orientations. Recognising word-representability is an NP-complete problem, and the bottleneck of the theory of word-representable graphs is convincing someone that a graph is non-word-representable, keeping in mind that references to (even publicly available and user-friendly) software are not always welcome. (Word-representability can be justified by providing a semi-transitive orientation as a certificate that can be checked in polynomial time.) In the literature, a variety of (usually ad hoc) proofs of non-word-representability for particular graphs, or families of graphs, appear, but for a randomly selected graph, one should expect looking at O(2^{#{edges}}) orientations and justifying that none of them is semi-transitive. In this paper, we develop methods for an automatic search of human-verifiable proofs of graph non-word-representability. As a proof-of-concept, we provide ``short'' proofs of non-word-representability, generated automatically by our publicly available user-friendly software, of the Shrikhande graph on 16 vertices and 48 edges (6 ``lines'' of proof) and the Clebsch graph on 16 vertices and 40 edges (10 ``lines'' of proof). As a bi-product of our studies, we correct two mistakes published multiple times (two graphs out of the 25 non-word-representable graphs on 7 vertices were actually word-representable, while two non-word-representable graphs on 7 vertices were missing)., Comment: A useful tool (Theorem 6) is added and used. The theorem allows to shorten proofs of non-word-representability significantly

A directed graph is semi-transitive if and only if it is acyclic and for any directed path $u_1\rightarrow u_2\rightarrow \cdots \rightarrow u_t$, $t \geq 2$, either there is no edge from $u_1$ to $u_t$ or all edges $u_i\rightarrow u_j$ exist for $1 \leq i < j \leq t$. In this paper, we study semi-transitivity of families of directed split graphs obtained by iterations of morphisms applied to the adjacency matrices and giving in the limit infinite directed split graphs. A split graph is a graph in which the vertices can be partitioned into a clique and an independent set. We fully classify semi-transitive infinite directed split graphs when a morphism in question can involve any $n\times m$ matrices over $\{-1,0,1\}$ with a single natural condition., Comment: 28 pages, 1 figure

We introduce the notion of a properly ordered coloring (POC) of a weighted graph, that generalizes the notion of vertex coloring of a graph. Under a POC, if $xy$ is an edge, then the larger weighted vertex receives a larger color; in the case of equal weights of $x$ and $y$, their colors must be different. In this paper, we shall initiate the study of this special coloring in graphs. For a graph $G$, we introduce the function $f(G)$ which gives the maximum number of colors required by a POC over all weightings of $G$. We show that $f(G)=\ell(G)$, where $\ell(G)$ is the number of vertices of a longest path in $G$. Another function we introduce is $\chi_{POC}(G;t)$ giving the minimum number of colors required over all weightings of $G$ using $t$ distinct weights. We show that the ratio of $\chi_{POC}(G;t)-1$ to $\chi(G)-1$ can be bounded by $t$ for any graph $G$; in fact, the result is shown by determining $\chi_{POC}(G;t)$ when $G$ is a complete multipartite graph. We also determine the minimum number of colors to give a POC on a vertex-weighted graph in terms of the number of vertices of a longest directed path in an orientation of the underlying graph. This extends the so called Gallai-Hasse-Roy-Vitaver theorem, a classical result concerning the relationship between the chromatic number of a graph $G$ and the number of vertices of a longest directed path in an orientation of $G$., Comment: To appear in "Order"

We give a brief overview of the life and combinatorics of Jeff Remmel, a mathematician with successful careers in both logic and combinatorics., Comment: To appear in "Enumerative Combinatorics and Applications"

The notion of a $p$-Riordan graph generalizes that of a Riordan graph, which, in turn, generalizes the notions of a Pascal graph and a Toeplitz graph. In this paper we introduce the notion of a $p$-Riordan word, and show how to encode $p$-Riordan graphs by $p$-Riordan words. For special important cases of Riordan graphs (the case $p=2$) and oriented Riordan graphs (the case $p=3$) we provide alternative encodings in terms of pattern-avoiding permutations and certain balanced words, respectively. As a bi-product of our studies, we provide an alternative proof of a known enumerative result on closed walks in the cube., Comment: To appear in Graphs and Combinatorics, 14 pages, 1 fiugure

The notion of a Riordan graph was introduced recently, and it is a far-reaching generalization of the well-known Pascal graphs and Toeplitz graphs. However, apart from a certain subclass of Toeplitz graphs, nothing was known on independent sets in Riordan graphs. In this paper, we give exact enumeration and lower and upper bounds for the number of independent sets for various classes of Riordan graphs. Remarkably, we offer a variety of methods to solve the problems that range from the structural decomposition theorem to methods in combinatorics on words. Some of our results are valid for any graph., Comment: Accepted for publication in Discrete Mathematics

An orientation of a graph is semi-transitive if it is acyclic, and for any directed path $v_0\rightarrow v_1\rightarrow \cdots\rightarrow v_k$ either there is no arc between $v_0$ and $v_k$, or $v_i\rightarrow v_j$ is an arc for all $0\leq i

The notion of a 12-representable graph was introduced by Jones et al.. This notion generalizes the notions of the much studied permutation graphs and co-interval graphs. It is known that any 12-representable graph is a comparability graph, and also that a tree is 12-representable if and only if it is a double caterpillar. Moreover, Jones et al.\ initiated the study of 12-representability of induced subgraphs of a grid graph, and asked whether it is possible to characterize such graphs. This question in is meant to be about induced subgraphs of a grid graph that consist of squares, which we call square grid graphs. However, an induced subgraph in a grid graph does not have to contain entire squares, and we call such graphs line grid graphs. In this paper we answer the question of Jones et al.\ by providing a complete characterization of $12$-representable square grid graphs in terms of forbidden induced subgraphs. Moreover, we conjecture such a characterization for the line grid graphs and give a number of results towards solving this challenging conjecture. Our results are a major step in the direction of characterization of all 12-representable graphs since beyond our characterization, we also discuss relations between graph labelings and 12-representability, one of the key open questions in the area., Comment: To appear in Discussiones Mathematicae Graph Theory

There is a long line of research in the literature dedicated to word-representable graphs, which generalize several important classes of graphs. However, not much is known about word-representability of split graphs, another important class of graphs. In this paper, we show that threshold graphs, a subclass of split graphs, are word-representable. Further, we prove a number of general theorems on word-representable split graphs, and use them to characterize computationally such graphs with cliques of size 5 in terms of 9 forbidden subgraphs, thus extending the known characterization for word-representable split graphs with cliques of size 4. Moreover, we use split graphs, and also provide an alternative solution, to show that gluing two word-representable graphs in any clique of size at least 2 may, or may not, result in a word-representable graph. The two surprisingly simple solutions provided by us answer a question that was open for about ten years.

A universal cycle, or u-cycle, for a given set of words is a circular word that contains each word from the set exactly once as a contiguous subword. The celebrated de Bruijn sequences are a particular case of such a u-cycle, where a set in question is the set $A^n$ of all words of length $n$ over a $k$-letter alphabet $A$. A universal word, or u-word, is a linear, i.e. non-circular, version of the notion of a u-cycle, and it is defined similarly. Removing some words in $A^n$ may, or may not, result in a set of words for which u-cycle, or u-word, exists. The goal of this paper is to study the probability of existence of the universal objects in such a situation. We give lower bounds for the probability in general cases, and also derive explicit answers for the case of removing up to two words in $A^n$, or the case when $k=2$ and $n\leq 4$., Comment: 17 pages, 4 tables

Distinct letters $x$ and $y$ alternate in a word $w$ if after deleting in $w$ all letters but the copies of $x$ and $y$ we either obtain a word of the form $xyxy\cdots$ (of even or odd length) or a word of the form $yxyx\cdots$ (of even or odd length). A graph $G=(V,E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ if and only if $xy$ is an edge in $E$. In this paper we initiate the study of word-representable Toeplitz graphs, which are Riordan graphs of the Appell type. We prove that several general classes of Toeplitz graphs are word-representable, and we also provide a way to construct non-word-representable Toeplitz graphs. Our work not only merges the theories of Riordan matrices and word-representable graphs via the notion of a Riordan graph, but also it provides the first systematic study of word-representability of graphs defined via patterns in adjacency matrices. Moreover, our paper introduces the notion of an infinite word-representable Riordan graph and gives several general examples of such graphs. It is the first time in the literature when the word-representability of infinite graphs is discussed., Comment: To appear in Discrete Applied Mathematics

Partially ordered patterns (POPs) generalize the notion of classical patterns studied widely in the literature in the context of permutations, words, compositions and partitions. In an occurrence of a POP, the relative order of some of the elements is not important. Thus, any POP of length $k$ is defined by a partially ordered set on $k$ elements, and classical patterns correspond to $k$-element chains. The notion of a POP provides a convenient language to deal with larger sets of permutation patterns. This paper contributes to a long line of research on classical permutation patterns of length 4 and 5, and beyond, by conducting a systematic search of connections between sequences in the Online Encyclopedia of Integer Sequences (OEIS) and permutations avoiding POPs of length 4 and 5. As the result, we (i) obtain 13 new enumerative results for classical patterns of length 4 and 5, and a number of results for patterns of arbitrary length, (ii) collect under one roof many sporadic results in the literature related to avoidance of patterns of length 4 and 5, and (iii) conjecture 6 connections to the OEIS. Among the most intriguing bijective questions we state, 7 are related to explaining Wilf-equivalence of various sets of patterns, e.g.\ 5 or 8 patterns of length 4, and 2 or 6 patterns of length~5.

An orientation of a graph is semi-transitive if it is acyclic, and for any directed path $v_0\rightarrow v_1\rightarrow \cdots\rightarrow v_k$ either there is no edge between $v_0$ and $v_k$, or $v_i\rightarrow v_j$ is an edge for all $0\leq i

Br\"and\'en and Claesson introduced mesh patterns to provide explicit expansions for certain permutation statistics as linear combinations of (classical) permutation patterns. The first systematic study of avoidance of mesh patterns was conducted by Hilmarsson et al., while the first systematic study of the distribution of mesh patterns was conducted by the first two authors. In this paper, we provide far-reaching generalizations for 8 known distribution results and 5 known avoidance results related to mesh patterns by giving distribution or avoidance formulas for certain infinite families of mesh patterns in terms of distribution or avoidance formulas for smaller patterns. Moreover, as a corollary to a general result, we find the distribution of one more mesh pattern of length 2., Comment: 27 pages

A systematic study of avoidance of mesh patterns of length 2 was conducted by Hilmarsson et al., where 25 out of 65 non-equivalent cases were solved. In this paper, we give 27 distribution results for these patterns including 14 distributions for which avoidance was not known. Moreover, for the unsolved cases, we prove an equidistribution result (out of 6 equidistribution results we prove in total), and conjecture 6 more equidistributions. Finally, we find seemingly unknown distribution of the well known permutation statistic ``strict fixed point'', which plays a key role in many of our enumerative results. This paper is the first systematic study of distributions of mesh patterns. Our techniques to obtain the results include, but are not limited to, obtaining functional relations for generating functions, and finding recurrence relations and bijections., Comment: Advances in Applied Mathematics 110 (2019) 1-32; there is a mistake in the proof of Theorem 5.1 in version 1 of the paper; its statement is now a conjecture

A simple graph $G=(V,E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ iff $xy\in E$. Word-representable graphs generalize several important classes of graphs. A graph is word-representable iff it admits a semi-transitive orientation. We use semi-transitive orientations to enumerate connected non-word-representable graphs up to the size of 11 vertices, which led to a correction of a published result. Obtaining the enumeration results took 3 CPU years of computation. Also, a graph is word-representable iff it is $k$-representable for some $k$, that is, if it can be represented using $k$ copies of each letter. The minimum such $k$ for a given graph is called graph's representation number. Our computational results in this paper not only include distribution of $k$-representable graphs on at most 9 vertices, but also have relevance to a known conjecture on these graphs. In particular, we find a new graph on 9 vertices with high representation number. Finally, we introduce the notion of a $k$-semi-transitive orientation refining the notion of a semi-transitive orientation, and show computationally that the refinement is not equivalent to the original definition unlike the equivalence of $k$-representability and word-representability.

Distinct letters $x$ and $y$ alternate in a word $w$ if after deleting in $w$ all letters but the copies of $x$ and $y$ we either obtain a word of the form $xyxy\cdots$ (of even or odd length) or a word of the form $yxyx\cdots$ (of even or odd length). A simple graph $G=(V,E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ if and only if $xy$ is an edge in $E$. Thus, edges of $G$ are defined by avoiding the consecutive pattern 11 in a word representing $G$, that is, by avoiding $xx$ and $yy$. In 2017, Jeff Remmel has introduced the notion of a $k$-$11$-representable graph for a non-negative integer $k$, which generalizes the notion of a word-representable graph. Under this representation, edges of $G$ are defined by containing at most $k$ occurrences of the consecutive pattern $11$ in a word representing $G$. Thus, word-representable graphs are precisely $0$-$11$-representable graphs. Our key result in this paper is showing that any graph is $2$-$11$-representable by a concatenation of permutations, which is rather surprising taking into account that concatenation of permutations has limited power in the case of $0$-$11$-representation. Also, we show that the class of word-representable graphs, studied intensively in the literature, is contained strictly in the class of $1$-$11$-representable graphs. Another result that we prove is the fact that the class of interval graphs is precisely the class of $1$-$11$-representable graphs that can be represented by uniform words containing two copies of each letter. This result can be compared with the known fact that the class of circle graphs is precisely the class of $0$-$11$-representable graphs that can be represented by uniform words containing two copies of each letter., Comment: A key result on 2-11-representability of any graph was added

The authors of this paper have used the theory of Riordan matrices to introduce the notion of a Riordan graph in \cite{CJKM}. Riordan graphs are proved to have a number of interesting (fractal) properties, and they are a far-reaching generalization of the well known and well studied Pascal graphs and Toeplitz graphs, and also some other families of graphs. The main focus in \cite{CJKM} is the study of structural properties of families of Riordan graphs obtained from certain infinite Riordan graphs. In this paper, we use a number of results in~\cite{CJKM} to study spectral properties of Riordan graphs. Our studies include, but are not limited to the spectral graph invariants for Riordan graphs such as the adjacency eigenvalues, (signless) Laplacian eigenvalues, nullity, positive and negative inertias, and rank. We also study determinants of Riordan graphs, in particular, giving results about determinants of Catalan graphs., Comment: 33 pages

A universal cycle for permutations of length $n$ is a cyclic word or permutation, any factor of which is order-isomorphic to exactly one permutation of length $n$, and containing all permutations of length $n$ as factors. It is well known that universal cycles for permutations of length $n$ exist. However, all known ways to construct such cycles are rather complicated. For example, in the original paper establishing the existence of the universal cycles, constructing such a cycle involves finding an Eulerian cycle in a certain graph and then dealing with partially ordered sets. In this paper, we offer a simple way to generate a universal cycle for permutations of length $n$, which is based on applying a greedy algorithm to a permutation of length $n-1$. We prove that this approach gives a unique universal cycle $\Pi_n$ for permutations, and we study properties of $\Pi_n$.

In this paper, we use the theory of Riordan matrices to introduce the notion of a Riordan graph. The Riordan graphs are a far-reaching generalization of the well known and well studied Pascal graphs and Toeplitz graphs, and also some other families of graphs. The Riordan graphs are proved to have a number of interesting (fractal) properties, which can be useful in creating computer networks with certain desirable features, or in obtaining useful information when designing algorithms to compute values of graph invariants. The main focus in this paper is the study of structural properties of families of Riordan graphs obtained from infinite Riordan graphs, which includes a fundamental decomposition theorem and certain conditions on Riordan graphs to have an Eulerian trail/cycle or a Hamiltonian cycle. We will study spectral properties of the Riordan graphs in a follow up paper., Comment: 45 pages, 12 figures

Letters $x$ and $y$ alternate in a word $w$ if after deleting in $w$ all letters but the copies of $x$ and $y$ we either obtain a word $xyxy\cdots$ (of even or odd length) or a word $yxyx\cdots$ (of even or odd length). A graph $G=(V,E)$ is word-representable if and only if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ if and only if $xy\in E$. It is known that a graph is word-representable if and only if it admits a certain orientation called semi-transitive orientation. Word-representable graphs generalize several important classes of graphs such as $3$-colorable graphs, circle graphs, and comparability graphs. There is a long line of research in the literature dedicated to word-representable graphs. However, almost nothing is known on word-representability of split graphs, that is, graphs in which the vertices can be partitioned into a clique and an independent set. In this paper, we shed a light to this direction. In particular, we characterize in terms of forbidden subgraphs word-representable split graphs in which vertices in the independent set are of degree at most 2, or the size of the clique is 4. Moreover, we give necessary and sufficient conditions for an orientation of a split graph to be semi-transitive.

This paper initiates the study of shortening universal cycles (u-cycles) and universal words (u-words) for permutations either by using incomparable elements, or by using non-deterministic symbols. The latter approach is similar in nature to the recent relevant studies for the de Bruijn sequences. A particular result we obtain in this paper is that u-words for $n$-permutations exist of lengths $n!+(1-k)(n-1)$ for $k=0,1,\ldots,(n-2)!$.

Letters $x$ and $y$ alternate in a word $w$ if after deleting in $w$ all letters but the copies of $x$ and $y$ we either obtain a word $xyxy\cdots$ (of even or odd length) or a word $yxyx\cdots$ (of even or odd length). A graph $G=(V,E)$ is word-representable if and only if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ if and only if $xy\in E$. Word-representable graphs generalize several important classes of graphs such as circle graphs, $3$-colorable graphs and comparability graphs. This paper offers a comprehensive introduction to the theory of word-representable graphs including the most recent developments in the area., Comment: To appear in Lecture Notes in Computer Science 10396

A graph $G=(V,E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ if and only if $xy$ is an edge in $E$. It is known that any word-representable graph $G$ is $k$-word-representable for some $k$, that is, there exists a word $w$ representing $G$ such that each letter occurs exactly $k$ times in $w$. The minimum such $k$ is called $G$'s representation number. A crown graph $H_{n,n}$ is a graph obtained from the complete bipartite graph $K_{n,n}$ by removing a perfect matching. In this paper we show that for $n\geq 5$, $H_{n,n}$'s representation number is $\lceil n/2 \rceil$. This result not only provides a complete solution to the open Problem 7.4.2 in \cite{KL}, but also gives a negative answer to the question raised in Problem 7.2.7 in \cite{KL} on 3-word-representability of bipartite graphs. As a byproduct we obtain a new example of a graph class with a high representation number.

Comtet introduced the notion of indecomposable permutations in 1972. A permutation is indecomposable if and only if it has no proper prefix which is itself a permutation. Indecomposable permutations were studied in the literature in various contexts. In particular, this notion has been proven to be useful in obtaining non-trivial enumeration and equidistribution results on permutations. In this paper, we give a complete classification of indecomposable permutations avoiding a classical pattern of length 3 or 4, and of indecomposable permutations avoiding a non-consecutive vincular pattern of length 3. Further, we provide a recursive formula for enumerating $12\cdots k$-avoiding indecomposable permutations for $k\geq 3$. Several of our results involve the descent statistic. We also provide a bijective proof of a fact relevant to our studies., Comment: 22 pages; The reference [14] is added and is mentioned in the text after Theorems 3.5 and 3.7

A graph $G = (V,E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $w$ if and only if $xy$ is an edge in $E$. Word-representable graphs are the subject of a long research line in the literature initiated in \cite{KP}, and they are the main focus in the recently published book \cite{KL}. A word $w=w_1\cdots w_{n}$ avoids the pattern $132$ if there are no $1\leq i_1

A universal word for a finite alphabet $A$ and some integer $n\geq 1$ is a word over $A$ such that every word in $A^n$ appears exactly once as a subword (cyclically or linearly). It is well-known and easy to prove that universal words exist for any $A$ and $n$. In this work we initiate the systematic study of universal partial words. These are words that in addition to the letters from $A$ may contain an arbitrary number of occurrences of a special `joker' symbol $\Diamond\notin A$, which can be substituted by any symbol from $A$. For example, $u=0\Diamond 011100$ is a linear partial word for the binary alphabet $A=\{0,1\}$ and for $n=3$ (e.g., the first three letters of $u$ yield the subwords $000$ and $010$). We present results on the existence and non-existence of linear and cyclic universal partial words in different situations (depending on the number of $\Diamond$s and their positions), including various explicit constructions. We also provide numerous examples of universal partial words that we found with the help of a computer.

The idea of (combinatorial) Gray codes is to list objects in question in such a way that two successive objects differ in some pre-specified small way. In this paper, we utilize beta-description trees to cyclicly Gray code three classes of cubic planar maps, namely, bicubic planar maps, 3-connected cubic planar maps, and cubic non-separable planar maps.

A graph $G=(V,E)$ is word-representable if there exists a word $w$ over the alphabet $V$ such that letters $x$ and $y$, $x\neq y$, alternate in $w$ if and only if $(x,y)\in E$. Halld\'{o}rsson et al.\ have shown that a graph is word-representable if and only if it admits a so-called semi-transitive orientation. A corollary to this result is that any 3-colorable graph is word-representable. Akrobotu et al.\ have shown that a triangulation of a grid graph is word-representable if and only if it is 3-colorable. This result does not hold for triangulations of grid-covered cylinder graphs, namely, there are such word-representable graphs with chromatic number 4. In this paper we show that word-representability of triangulations of grid-covered cylinder graphs with three sectors (resp., more than three sectors) is characterized by avoiding a certain set of six minimal induced subgraphs (resp., wheel graphs $W_5$ and $W_7$)., Comment: 19 pages

A word $w=w_1w_2\cdots w_n$ is alternating if either $w_1w_3\cdots$ (when the word is up-down) or $w_1>w_2w_4<\cdots$ (when the word is down-up). The study of alternating words avoiding classical permutation patterns was initiated by the authors in~\cite{GKZ}, where, in particular, it was shown that 123-avoiding up-down words of even length are counted by the Narayana numbers. However, not much was understood on the structure of 123-avoiding up-down words. In this paper, we fill in this gap by introducing the notion of a cut-pair that allows us to subdivide the set of words in question into equivalence classes. We provide a combinatorial argument to show that the number of equivalence classes is given by the Catalan numbers, which induces an alternative (combinatorial) proof of the corresponding result in~\cite{GKZ}. Further, we extend the enumerative results in~\cite{GKZ} to the case of alternating words avoiding a vincular pattern of length 3. We show that it is sufficient to enumerate up-down words of even length avoiding the consecutive pattern $\underline{132}$ and up-down words of odd length avoiding the consecutive pattern $\underline{312}$ to answer all of our enumerative questions. The former of the two key cases is enumerated by the Stirling numbers of the second kind., Comment: 25 pages; To appear in Discrete Mathematics