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Entrapped air in porous media can significantly affect water flow but simulations of air entrapment are still challenging. We developed a pore-network model using quasi-static algorithms to simulate air entrapment during spontaneous wetting and subsequent drainage processes. The model, implemented in OpenPNM, was tailored to replicate an experiment conducted on a medium-sized unconsolidated sand sample. We started building the model with three types of relatively small networks formed by 54,000 pore bodies which we used to calibrate basic network topological parameters by fitting the model to the water retention curve and the saturated hydraulic conductivity of the sand sample. Using these parameters, along with X-ray image data (µCT), a larger network formed by over 250,000 pore bodies was introduced in the form of stacked sub-networks where topological parameters were scaled along the z-axis. We investigated the impact of two different contact angles on air entrapment. For a contact angle of 0, the model showed good agreement with the experimental data, accurately predicting the amount of entrapped air and the saturated hydraulic conductivity. On the contrary, for a contact angle of π/4, the model provided reasonable accuracy for saturated hydraulic conductivity but overestimated the amount of entrapped air. Overall, this approach demonstrated that a reasonable match between simulated and experimental data can be achieved with minimal computational costs. [ABSTRACT FROM AUTHOR]

Hydro-pedotransfer functions (PTFs) relate easy-to-measure and readily available soil information to soil hydraulic properties (SHPs) for applications in a wide range of process-based and empirical models, thereby enabling the assessment of soil hydraulic effects on hydrological, biogeochemical, and ecological processes. At least more than 4 decades of research have been invested to derive such relationships. However, while models, methods, data storage capacity, and computational efficiency have advanced, there are fundamental concerns related to the scope and adequacy of current PTFs, particularly when applied to parameterise models used at the field scale and beyond. Most of the PTF development process has focused on refining and advancing the regression methods, while fundamental aspects have remained largely unconsidered. Most soil systems are not represented in PTFs, which have been built mostly for agricultural soils in temperate climates. Thus, existing PTFs largely ignore how parent material, vegetation, land use, and climate affect processes that shape SHPs. The PTFs used to parameterise the Richards–Richardson equation are mostly limited to predicting parameters of the van Genuchten–Mualem soil hydraulic functions, despite sufficient evidence demonstrating their shortcomings. Another fundamental issue relates to the diverging scales of derivation and application, whereby PTFs are derived based on laboratory measurements while often being applied at the field to regional scales. Scaling, modulation, and constraining strategies exist to alleviate some of these shortcomings in the mismatch between scales. These aspects are addressed here in a joint effort by the members of the International Soil Modelling Consortium (ISMC) Pedotransfer Functions Working Group with the aim of systematising PTF research and providing a roadmap guiding both PTF development and use. We close with a 10-point catalogue for funders and researchers to guide review processes and research. [ABSTRACT FROM AUTHOR]

Soil aggregation is an important process in nearly all soils across the globe. Aggregates develop over time through a series of abiotic and biotic processes and interactions, including plant growth and decay, microbial activity, plant and microbial exudation, bioturbation, and physicochemical stabilization processes, and are greatly influenced by soil management practices. Together, and through feedback with organic matter and primary soil particles, these processes form dynamic soil aggregates and pore spaces, which jointly constitute a soil's structure and contribute to overall soil functioning. Nevertheless, the concept of soil aggregates is hotly debated, leading to confusion about their function or relevancy to soil processes. We argue here that the opposition to the concept of soil aggregation likely stems from the fact that the methods for the characterization of soil aggregates have largely been developed in the context of arable soils, where tillage promotes the formation of distinct soil aggregates that are easily visible in the topsoil. We propose that the widespread use of conceptual figures showing detached and isolated aggregates can be misleading and has contributed to the skepticism towards soil aggregates. However, the fact that we do not always see discrete aggregates within soils in situ does not mean that aggregates do not exist or are not relevant to the study of soil processes. Given that, by definition, soil aggregates consist of any group of soil particles that cohere more strongly to each other than neighboring particles, aggregates may, but do not necessarily need to be, bordered by pore space. Here, we illustrate how aggregates can form and dissipate within the context of undisturbed, intact soils, highlighting the point that aggregates do not necessarily need to have a discrete physical boundary and can exist seamlessly embedded in the soil. We hope that our contribution helps the debate on soil aggregates and supports the foundation of a shared understanding on the characterization and function of soil structure. [ABSTRACT FROM AUTHOR]

Hydro-pedotransfer functions (PTFs) relate easy-to-measure and readily available soil information to soil hydraulic properties for applications in a wide range of process-based and empirical models, thereby enabling the assessment of soil hydraulic effects on hydrological, biogeochemical, and ecological processes. At least more than four decades of research have been invested to derive such relationships. However, while models, methods, data storage capacity, and computational efficiency have advanced, there are fundamental concerns related to the scope and adequacy of current PTFs, particularly when applied to parameterize models used at the field scale and beyond. Most of the PTF development process has focused on refining and advancing the regression methods, while fundamental aspects have remained largely unconsidered. Most system settings are not captured by existing PTFs, which have been built mostly for agricultural soils in temperate climates. Thus. existing PTFs largely ignorie how parent material, vegetation, land use, and climate affect processes that shape soil hydraulic properties. The PTFs used to parameterise the Richards-Richardson equation are mostly limited to predicting parameters of the van Genuchten-Mualem soil hydraulic functions, despite sufficient evidence demonstrating their shortcomings. Another fundamental issue relates to the diverging scales of derivation and application, whereby PTFs are derived based on laboratory measurements while being often applied at field to regional scales. Scaling, modulation, and constraining strategies exist to alleviate some of these shortcomings in the mismatch between scales. These aspects are addressed here in a joint effort by the members of the International Soil Modelling Consortium (ISMC) Pedotransfer Functions Working Group with the aim to systematise PTF research and provide a roadmap guiding both PTF development and use. [ABSTRACT FROM AUTHOR]

Summarizing information from large bodies of scientific literature is an essential but work-intensive task. This is especially true in environmental studies where multiple factors (e.g., soil, climate, vegetation) can contribute to the effects observed. Meta-analyses, studies that quantitatively summarize findings of a large body of literature, rely on manually curated databases built upon primary publications. However, given the increasing amount of literature, this manual work is likely to require more and more effort in the future. Natural language processing (NLP) facilitates this task, but it is not clear yet to which extent the extraction process is reliable or complete. In this work, we explore three NLP techniques that can help support this task: topic modeling, tailored regular expressions and the shortest dependency path method. We apply these techniques in a practical and reproducible workflow on two corpora of documents: the Open Tension-disk Infiltrometer Meta-database (OTIM) and the Meta corpus. The OTIM corpus contains the source publications of the entries of the OTIM database of near-saturated hydraulic conductivity from tension-disk infiltrometer measurements (https://github.com/climasoma/otim-db , last access: 1 March 2023). The Meta corpus is constituted of all primary studies from 36 selected meta-analyses on the impact of agricultural practices on sustainable water management in Europe. As a first step of our practical workflow, we identified different topics from the individual source publications of the Meta corpus using topic modeling. This enabled us to distinguish well-researched topics (e.g., conventional tillage, cover crops), where meta-analysis would be useful, from neglected topics (e.g., effect of irrigation on soil properties), showing potential knowledge gaps. Then, we used tailored regular expressions to extract coordinates, soil texture, soil type, rainfall, disk diameter and tensions from the OTIM corpus to build a quantitative database. We were able to retrieve the respective information with 56 % up to 100 % of all relevant information (recall) and with a precision between 83 % and 100 %. Finally, we extracted relationships between a set of drivers corresponding to different soil management practices or amendments (e.g., "biochar", "zero tillage") and target variables (e.g., "soil aggregate", "hydraulic conductivity", "crop yield") from the source publications' abstracts of the Meta corpus using the shortest dependency path between them. These relationships were further classified according to positive, negative or absent correlations between the driver and the target variable. This quickly provided an overview of the different driver–variable relationships and their abundance for an entire body of literature. Overall, we found that all three tested NLP techniques were able to support evidence synthesis tasks. While human supervision remains essential, NLP methods have the potential to support automated evidence synthesis which can be continuously updated as new publications become available. [ABSTRACT FROM AUTHOR]

Climate change will most likely lead to an increase of extreme weather events, including heavy rainfall with soil surface runoff and erosion. Adapting agricultural management practices that lead to increased infiltration capacities of soil has potential to mitigate these risks. However, effects of agricultural management practices (tillage, cover crops, amendment, …) on soil variables (hydraulic conductivity, aggregate stability, …) often depend on the pedo-climatic context. Hence, the only possibility to gather information needed to advise stakeholders on suitable management practices is to quantify such dependencies using meta-analyses of studies investigating this topic. As a first step, structured information from scientific publications needs to be extracted to build a meta-database, which then can be analyzed and recommendations can be given in dependence to the pedo-climatic context. Manually building such a database by going through all publications is very time-consuming. Given the increasing amount of literature, this task is likely to require more and more effort in the future. Natural language processing (NLP) facilitates this task, but it is not clear yet to which extent the extraction process is reliable or complete. In this work, two corpora of documents were used, which we refer to as the OTIM and the Meta corpus in the following. The OTIM corpus contains the source publications of the entries of the OTIM database of near-saturated hydraulic conductivity from tension-disk infiltrometer measurements (https://github.com/climasoma/otim-db). The Meta corpus is constituted of all primary studies from 36 selected meta-analyses on the impact of agricultural practices on sustainable water management in Europe. We focused on three NLP techniques: topic modeling, tailored regular expressions and dictionaries and the shortest dependency path. We used topic modeling to sort the individual source-publications of the Meta corpus into 6 topics (e.g. related to cover crops, biochar, …) with a coherence metric Cv ranging from 0.7 to 0.9; Then, we used tailored regular expressions and dictionaries to extract coordinates, soil texture, soil type, rainfall, disk diameter and tensions on the OTIM corpus. We found that the respective information could be retrieved with 56 % up to 100 % of all relevant information (recall) and with a precision between 83 % and 100 %. Finally, we extracted relationships between a set of practices keywords (e.g. 'biochar', 'zero tillage', …) and soil variables (e.g. 'soil aggregate', 'hydraulic conductivity', 'crop yield',…) from the source-publications' abstracts of the Meta corpus using the shortest dependency path between them. These relationships were further classified according to positive, negative or absent correlations between the driver and soil property. This quickly provided an overview of the different driver-variable relationships and their abundance for an entire body of literature. Overall, we found that all three tested NLP techniques were able to support evidence synthesis tasks such as selecting relevant publications on a topic, extracting specific information to build databases for meta-analysis and providing an overview of relationships found in the corpus. While human supervision remains essential, NLP methods have the potential to support fully automated evidence synthesis that can be continuously updated as new publications become available. [ABSTRACT FROM AUTHOR]