107 results on '"Kolega J"'
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2. Phototoxicity and photoinactivation of blebbistatin in UV and visible light
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Kolega, J
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- 2004
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3. Contributors
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Adams, S.R., primary, Aikens, R., additional, Antić, S., additional, Bacskai, B.J., additional, Badminton, M.N., additional, Bakker Schut, T.C., additional, Bar-Am, I., additional, Blancaflor, E., additional, Bobanović, F., additional, Bodsworth, N., additional, Bolsover, S., additional, Bootman, M.D., additional, Bowser, D.N., additional, Bruining, H.A., additional, Buschman, H.P.J., additional, Campbell, A.K., additional, Caspers, P.J., additional, Chance, B., additional, Cody, S.H., additional, Cohen, L.B., additional, Coremans, J.M.C.C., additional, Cox, G.C., additional, Culbert, A.A., additional, DeBasio, R., additional, de Feijter, A.W., additional, Dempster, J., additional, Dubbin, P.N., additional, Dubinsky, Z., additional, Falk, C.X., additional, Florine-Casteel, K., additional, Foote, N., additional, Fricker, M.D., additional, Gadella, T.W.J., additional, Gilroy, S., additional, Gratton, E., additional, Gurney, A.M., additional, Haggart, R., additional, Hahn, K., additional, Haugland, R.P., additional, Herman, B., additional, Hoekstra, D., additional, Horton, M.A., additional, Hoyland, J., additional, Ichihara, A., additional, Ishida, H., additional, Johnson, I.D., additional, Jones, H.E., additional, Kain, S.R., additional, Kannan, M.S., additional, Kasten, F.H., additional, Katz, S., additional, Kendall, J.M., additional, Knight, H., additional, Knight, M.R., additional, Kok, J.W., additional, Kolega, J., additional, Kurtz, I., additional, Lemasters, J.J., additional, Lipp, P., additional, Llewellyn, D.H., additional, Loew, L., additional, Lyons, A., additional, Mackay, C., additional, Malik, Z., additional, Mason, W.T., additional, Masters, B.R., additional, McCann, T.J., additional, Mitchison, T.J., additional, Montibeller, J., additional, Myers, J., additional, O'Brien, W., additional, Plieth, C., additional, Ploem, J.S., additional, Post, P., additional, Prakash, Y.S., additional, Puppels, G.J., additional, Römer, T.J., additional, Rothmann, C., additional, Rutter, G.A., additional, Sala-Newby, G.B., additional, Sawin, K.E., additional, Shankar, G., additional, Sheppard, C.J.R., additional, Shimizu, M., additional, Shorte, S.L., additional, Sieck, G.C., additional, Simons, E.R., additional, Singer, V., additional, Skews, G., additional, So, P.T.C., additional, Somasundaram, B., additional, Tanaami, T., additional, Tavaré, J.M., additional, Taylor, S.S., additional, Taylor, K.M., additional, Taylor, D.L., additional, Theriot, J.A., additional, Tomkins, P., additional, Trosko, J.E., additional, Tsien, R.Y., additional, Wade, M.H., additional, White, N.S., additional, Williams, D.A., additional, Wolthuis, R., additional, Wu, J.-y., additional, Yip, K.-P., additional, Zečević, D., additional, and Zelenin, A.V., additional
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- 1999
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4. Fluorescent Analogues: Optical Biosensors of the Chemical and Molecular Dynamics of Macromolecules in Living Cells
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HAHN, K., primary, KOLEGA, J., additional, MONTIBELLER, J., additional, DeBIASIO, R., additional, POST, P., additional, MYERS, J., additional, and TAYLOR, D.L., additional
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- 1999
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5. Increased Perviousness on CT for Acute Ischemic Stroke is Associated with Fibrin/Platelet-Rich Clots.
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Patel, T. R., Fricano, S., Waqas, M., Tso, M., Dmytriw, A. A., Mokin, M., Kolega, J., Tomaszewski, J., Levy, E. I., Davies, J. M., Snyder, K. V., Siddiqui, A. H., and Tutino, V. M.
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- 2021
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6. Bacteriophages Recovered from Septage
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Calabro, J. F., Cosenza, B. J., and Kolega, J. J.
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- 1972
7. Recovery of Gram Negative Bacteria with Hektoen Agar
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Calabro, J. F., Cosenza, B. J., and Kolega, J. J.
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- 1972
8. Land Disposal of Septage (Septic Tank Pumpings)
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Kolega, J. J., Dewey, A. W., Leonard, R. L., Cosenza, B. J., and Barrekette, Euval S., editor
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- 1973
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9. Aneurysmal Changes at the Basilar Terminus in the Rabbit Elastase Aneurysm Model
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Meng, H., primary, Natarajan, S.K., additional, Gao, L., additional, Ionita, C., additional, Kolega, J., additional, Siddiqui, A.H., additional, and Mocco, J., additional
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- 2010
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10. Development of aneurysm‐like remodeling on vessels subjected to impinging flow
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Meng, Hui, primary, Swartz, D D, additional, Wang, Z J, additional, Gao, L, additional, Hoi, Y, additional, Kolega, J, additional, Metaxa, E, additional, Szymanski, M P, additional, Paciorek, A M, additional, Yamamoto, J, additional, Sauvageau, E, additional, Levy, E I, additional, and Hopkins, L N, additional
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- 2006
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11. In vivo model to correlate complex geometries with hemodynamics associated with cerebral aneurysm development
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Meng, H., primary, Swartz, D.D., additional, Wang, Z.J., additional, Hoi, Y., additional, Kolega, J., additional, Metaxa, E., additional, Szymanski, M.P., additional, Gao, L., additional, Paciorek, A.M., additional, Yamamoto, J., additional, Sauvageau, E., additional, Levy, E.I., additional, and Hopkins, L.N., additional
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- 2006
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12. Distinguishing endothelial responses to impingement force, wall shear stress, and wall shear stress gradient
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Metaxa, E., primary, Kolega, J., additional, Szymanski, M.P., additional, Wang, Z.J., additional, Swartz, D.D., additional, and Meng, H., additional
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- 2006
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13. Cytoplasmic dynamics of myosin IIA and IIB: spatial ‘sorting’ of isoforms in locomoting cells
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Kolega, J., primary
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- 1998
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14. Quantitation of cytoskeletal fibers in fluorescence images: Stress fiber disassembly accompanies dephosphorylation of the regulatory light chains of myosin II
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Kolega, J, primary, Nederlof, M A, additional, and Taylor, D L, additional
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- 1993
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15. Gradients in the concentration and assembly of myosin II in living fibroblasts during locomotion and fiber transport.
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Kolega, J, primary and Taylor, D L, additional
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- 1993
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16. Myosin II phosphorylation and the dynamics of stress fibers in serum-deprived and stimulated fibroblasts.
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Giuliano, K A, primary, Kolega, J, additional, DeBiasio, R L, additional, and Taylor, D L, additional
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- 1992
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17. Characterization of a keratinocyte-specific extracellular epitope of desmoglein. Implications for desmoglein heterogeneity and function.
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Loomis, C.A., primary, Kolega, J, additional, Manabe, M, additional, and Sun, T.T., additional
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- 1992
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18. The role of solation-contraction coupling in regulating stress fiber dynamics in nonmuscle cells.
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Kolega, J, primary, Janson, L W, additional, and Taylor, D L, additional
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- 1991
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19. Modulation of contraction by gelation/solation in a reconstituted motile model.
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Janson, L W, primary, Kolega, J, additional, and Taylor, D L, additional
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- 1991
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20. Asymmetric vascular stent: feasibility study of a new low-porosity patch-containing stent.
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Ionita CN, Paciorek AM, Hoffmann KR, Bednarek DR, Yamamoto J, Kolega J, Levy EI, Hopkins LN, Rudin S, Mocco J, Ionita, Ciprian N, Paciorek, Ann M, Hoffmann, Kenneth R, Bednarek, Daniel R, Yamamoto, Junichi, Kolega, John, Levy, Elad I, Hopkins, L Nelson, Rudin, Stephen, and Mocco, J
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- 2008
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21. Nascent aneurysm formation at the basilar terminus induced by hemodynamics.
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Gao L, Hoi Y, Swartz DD, Kolega J, Siddiqui A, Meng H, Gao, Ling, Hoi, Yiemeng, Swartz, Daniel D, Kolega, John, Siddiqui, Adnan, and Meng, Hui
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- 2008
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22. Chapter forty-one - Fluorescent Analogues: Optical Biosensors of the Chemical and Molecular Dynamics of Macromolecules in Living Cells
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Hahn, K., Kolega, J., Montibeller, J., DeBiasio, R., Post, P., Myers, J., and Taylor, D.L.
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- 1999
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23. The movement of cell clusters in vitro: morphology and directionality
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Kolega, J.
- Abstract
The movement of cells in small groups, or clusters, was studied in vitro using epithelioid cells from Gordon-Kosswig melanomas (from poecelid fish) and time-lapse cinemicrography. Tumour explants cultured on glass yield cell sheets from which groups of cells separate and become independently motile clusters. These clusters typically contain 3–30 cells, but may have as many as 50. They propel themselves at speeds of 0.2-4.0 micrometer/min by means of broad hyaline lamellae. The distribution of lamellae around the perimeter of each cluster correlates with both direction and speed of cluster movement, i.e. a cluster moves with its most lamellar region at its leading edge, and the greater the extent of the leading lamellar region the greater the speed. Also, a cluster tends to keep moving in the same direction. This persistence is due to a relatively constant distribution of lamellae. Cells on the trailing edge usually lack lamellae and most are very elongate and oriented perpendicular to the direction of cluster movement. In general, whenever a cell elongates, there is a loss of lamellar activity along its taut edges, parallel to the axis of elongation. Thus, any region with less lamellar activity would tend to be elongated by the outward pull of the more active regions to either side and would, in consequence, suffer a further reduction in lamellar activity. In this way, the distribution of regions of lamellar activity is self-reinforcing and the result is persistence of movement in a particular direction. This phenomenon could play an important role in giving directionality to certain morphogenetic movements, such as neural crest cell migration.
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- 1981
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24. Effects of mechanical tension on protrusive activity and microfilament and intermediate filament organization in an epidermal epithelium moving in culture.
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Kolega, J
- Abstract
Mechanical tension influences tissue morphogenesis and the synthetic, mitotic, and motile behavior of cells. To determine the effects of tension on epithelial motility and cytoskeletal organization, small, motile clusters of epidermal cells were artificially extended with a micromanipulated needle. Protrusive activity perpendicular to the axis of tension was dramatically suppressed. To determine the ultrastructural basis for this phenomenon, cells whose exact locomotive behavior was recorded cinemicrographically were examined by transmission electron microscopy. In untensed, forward-moving lamellar protrusions, microfilaments appear disorganized and anisotropically oriented. But in cytoplasm held under tension by micromanipulation or by the locomotive activity of other cells within the epithelium, microfilaments are aligned parallel to the tension. In non-spreading regions of the epithelial margin, microfilaments lie in tight bundles parallel to apparent lines of tension. Thus, it appears that tension causes alignment of microfilaments. In contrast, intermediate filaments are excluded from motile protrusions, being confined to the thicker, more central part of the cell. They roughly follow the contours of the cell, but are not aligned relative to tension even when microfilaments in the same cell are. This suggests that the organization of intermediate filaments is relatively resistant to physical distortion and the intermediate filaments may act as passive structural support within the cell. The alignment of microfilaments under tension suggests a mechanism by which tension suppresses protrusive activity: microfilaments aligned by forces exerted through filament-surface or filament-filament interconnections cannot reorient against such force and so cannot easily extend protrusions in directions not parallel to tension.
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- 1986
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25. Rapid cellular translocation is related to close contacts formed between various cultured cells and their substrata
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Kolega, J., primary, Shure, M.S., additional, Chen, W.T., additional, and Young, N.D., additional
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- 1982
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26. Survivin as a mediator of stiffness-induced cell cycle progression and proliferation of vascular smooth muscle cells.
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Biber JC, Sullivan A, Brazzo JA 3rd, Heo Y, Tumenbayar BI, Krajnik A, Poppenberg KE, Tutino VM, Heo SJ, Kolega J, Lee K, and Bae Y
- Abstract
Stiffened arteries are a pathology of atherosclerosis, hypertension, and coronary artery disease and a key risk factor for cardiovascular disease events. The increased stiffness of arteries triggers a phenotypic switch, hypermigration, and hyperproliferation of vascular smooth muscle cells (VSMCs), leading to neointimal hyperplasia and accelerated neointima formation. However, the mechanism underlying this trigger remains unknown. Our analyses of whole-transcriptome microarray data from mouse VSMCs cultured on stiff hydrogels simulating arterial pathology identified 623 genes that were significantly and differentially expressed (360 upregulated and 263 downregulated) relative to expression in VSMCs cultured on soft hydrogels. Functional enrichment and gene network analyses revealed that these stiffness-sensitive genes are linked to cell cycle progression and proliferation. Importantly, we found that survivin, an inhibitor of apoptosis protein, mediates stiffness-dependent cell cycle progression and proliferation as determined by gene network and pathway analyses, RT-qPCR, immunoblotting, and cell proliferation assays. Furthermore, we found that inhibition of cell cycle progression did not reduce survivin expression, suggesting that survivin functions as an upstream regulator of cell cycle progression and proliferation in response to ECM stiffness. Mechanistically, we found that the stiffness signal is mechanotransduced via the FAK-E2F1 signaling axis to regulate survivin expression, establishing a regulatory pathway for how the stiffness of the cellular microenvironment affects VSMC behaviors. Overall, our findings indicate that survivin is necessary for VSMC cycling and proliferation and plays a role in regulating stiffness-responsive phenotypes., Competing Interests: The authors have no conflicts to disclose., (© 2023 Author(s).)
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- 2023
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27. Survivin regulates intracellular stiffness and extracellular matrix production in vascular smooth muscle cells.
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Krajnik A, Nimmer E, Brazzo JA 3rd, Biber JC, Drewes R, Tumenbayar BI, Sullivan A, Pham K, Krug A, Heo Y, Kolega J, Heo SJ, Lee K, Weil BR, Kim DH, Gupte SA, and Bae Y
- Abstract
Vascular dysfunction is a common cause of cardiovascular diseases characterized by the narrowing and stiffening of arteries, such as atherosclerosis, restenosis, and hypertension. Arterial narrowing results from the aberrant proliferation of vascular smooth muscle cells (VSMCs) and their increased synthesis and deposition of extracellular matrix (ECM) proteins. These, in turn, are modulated by arterial stiffness, but the mechanism for this is not fully understood. We found that survivin is an important regulator of stiffness-mediated ECM synthesis and intracellular stiffness in VSMCs. Whole-transcriptome analysis and cell culture experiments showed that survivin expression is upregulated in injured femoral arteries in mice and in human VSMCs cultured on stiff fibronectin-coated hydrogels. Suppressed expression of survivin in human VSMCs significantly decreased the stiffness-mediated expression of ECM components related to arterial stiffening, such as collagen-I, fibronectin, and lysyl oxidase. By contrast, expression of these ECM proteins was rescued by ectopic expression of survivin in human VSMCs cultured on soft hydrogels. Interestingly, atomic force microscopy analysis showed that suppressed or ectopic expression of survivin decreases or increases intracellular stiffness, respectively. Furthermore, we observed that inhibiting Rac and Rho reduces survivin expression, elucidating a mechanical pathway connecting intracellular tension, mediated by Rac and Rho, to survivin induction. Finally, we found that survivin inhibition decreases FAK phosphorylation, indicating that survivin-dependent intracellular tension feeds back to maintain signaling through FAK. These findings suggest a novel mechanism by which survivin potentially modulates arterial stiffness., Competing Interests: The authors have no conflicts to disclose., (© 2023 Author(s).)
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- 2023
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28. The association between hemodynamics and wall characteristics in human intracranial aneurysms: a review.
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Rajabzadeh-Oghaz H, Siddiqui AH, Asadollahi A, Kolega J, and Tutino VM
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- Hemodynamics, Humans, Magnetic Resonance Imaging, Stress, Mechanical, Intracranial Aneurysm surgery
- Abstract
Hemodynamics plays a key role in the natural history of intracranial aneurysms (IAs). However, studies exploring the association between aneurysmal hemodynamics and the biological and mechanical characteristics of the IA wall in humans are sparse. In this review, we survey the current body of literature, summarize the studies' methodologies and findings, and assess the degree of consensus among them. We used PubMed to perform a systematic review of studies that explored the association between hemodynamics and human IA wall features using different sources. We identified 28 publications characterizing aneurysmal flow and the IA wall: 4 using resected tissues, 17 using intraoperative images, and 7 using vessel wall magnetic resonance imaging (MRI). Based on correlation to IA tissue, higher flow conditions, such as high wall shear stress (WSS) with complex pattern and elevated pressure, were associated with degenerated walls and collagens with unphysiological orientation and faster synthesis. MRI studies strongly supported that low flow, characterized by low WSS and high blood residence time, was associated with thicker walls and post-contrast enhancement. While significant discrepancies were found among those utilized intraoperative images, they generally supported that thicker walls coexist at regions with prolonged residence time and that thinner regions are mainly exposed to higher pressure with complex WSS patterns. The current body of literature supports a theory of two general hemodynamic-biologic mechanisms for IA development. One, where low flow conditions are associated with thickening and atherosclerotic-like remodeling, and the other where high and impinging flow conditions are related to wall degeneration, thinning, and collagen remodeling., (© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2022
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29. A machine learning pipeline revealing heterogeneous responses to drug perturbations on vascular smooth muscle cell spheroid morphology and formation.
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Vaidyanathan K, Wang C, Krajnik A, Yu Y, Choi M, Lin B, Jang J, Heo SJ, Kolega J, Lee K, and Bae Y
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- Atherosclerosis pathology, Cells, Cultured, Focal Adhesion Kinase 1 antagonists & inhibitors, Focal Adhesion Kinase 1 physiology, Humans, Neointima pathology, Spheroids, Cellular physiology, Vascular System Injuries pathology, cdc42 GTP-Binding Protein antagonists & inhibitors, cdc42 GTP-Binding Protein physiology, rac GTP-Binding Proteins antagonists & inhibitors, rac GTP-Binding Proteins physiology, Machine Learning, Muscle, Smooth, Vascular cytology, Muscle, Smooth, Vascular drug effects, Spheroids, Cellular drug effects, Spheroids, Cellular pathology
- Abstract
Machine learning approaches have shown great promise in biology and medicine discovering hidden information to further understand complex biological and pathological processes. In this study, we developed a deep learning-based machine learning algorithm to meaningfully process image data and facilitate studies in vascular biology and pathology. Vascular injury and atherosclerosis are characterized by neointima formation caused by the aberrant accumulation and proliferation of vascular smooth muscle cells (VSMCs) within the vessel wall. Understanding how to control VSMC behaviors would promote the development of therapeutic targets to treat vascular diseases. However, the response to drug treatments among VSMCs with the same diseased vascular condition is often heterogeneous. Here, to identify the heterogeneous responses of drug treatments, we created an in vitro experimental model system using VSMC spheroids and developed a machine learning-based computational method called HETEROID (heterogeneous spheroid). First, we established a VSMC spheroid model that mimics neointima-like formation and the structure of arteries. Then, to identify the morphological subpopulations of drug-treated VSMC spheroids, we used a machine learning framework that combines deep learning-based spheroid segmentation and morphological clustering analysis. Our machine learning approach successfully showed that FAK, Rac, Rho, and Cdc42 inhibitors differentially affect spheroid morphology, suggesting that multiple drug responses of VSMC spheroid formation exist. Overall, our HETEROID pipeline enables detailed quantitative drug characterization of morphological changes in neointima formation, that occurs in vivo, by single-spheroid analysis., (© 2021. The Author(s).)
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- 2021
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30. RNA Sequencing Data from Human Intracranial Aneurysm Tissue Reveals a Complex Inflammatory Environment Associated with Rupture.
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Tutino VM, Zebraski HR, Rajabzadeh-Oghaz H, Chaves L, Dmytriw AA, Siddiqui AH, Kolega J, and Poppenberg KE
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- Humans, RNA, Sequence Analysis, RNA, Exome Sequencing, Aneurysm, Ruptured genetics, Intracranial Aneurysm genetics
- Abstract
Background: Intracranial aneurysm (IA) rupture leads to deadly subarachnoid hemorrhages. However, the mechanisms leading to rupture remain poorly understood. Altered gene expression within IA tissue is linked to the pathobiology of aneurysm development and progression. Here, we analyzed expression patterns of control tissue samples and compared them to those of unruptured and ruptured IA tissue samples using data from the Gene Expression Omnibus (GEO)., Methods: FASTQ files for 21 ruptured IAs, 21 unruptured IAs, and 16 control tissue samples were accessed from the GEO database. DESeq2 was used for differential expression analysis in three comparisons: unruptured IA versus control, ruptured IA versus control, and ruptured versus unruptured IA. Genes that were differentially expressed in multiple comparisons were evaluated to find those progressively increasing/decreasing from control to unruptured to ruptured. Significance was tested by either analysis of variance/Gabriel or Brown-Forsythe/Games Howell (p < 0.05 was considered significant). We used additional RNA sequencing and proteomics datasets to evaluate if our differentially expressed genes (DEGs) were present in other studies. Bioinformatics analyses were performed with g:Profiler and Ingenuity Pathway Analysis., Results: In total, we identified 1768 DEGs, of which 318 were found in multiple comparisons. Unruptured versus control reflected vascular remodeling processes, while ruptured versus control reflected inflammatory responses and cell activation/signaling. When comparing ruptured to unruptured IAs, we found massive activation of inflammation, inflammatory responses, and leukocyte responses. Of the 318 genes in multiple comparisons, 127 were found to be significant in the multi-cohort correlation analysis. Those that progressively increased (70 genes) were associated with immune system processes, while those that progressively decreased (38 genes) did not return any gene ontology terms. Many of our DEGs were also found in the other IA tissue sequencing studies., Conclusions: We found unruptured IAs relate more to remodeling processes, while ruptured IAs reflect more inflammatory and immune responses., (© 2021. The Author(s), under exclusive licence to Springer Nature Switzerland AG.)
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- 2021
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31. Endogenous animal models of intracranial aneurysm development: a review.
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Tutino VM, Rajabzadeh-Oghaz H, Veeturi SS, Poppenberg KE, Waqas M, Mandelbaum M, Liaw N, Siddiqui AH, Meng H, and Kolega J
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- Animals, Disease Models, Animal, Humans, Mice, Rats, Aneurysm, Ruptured, Hypertension, Intracranial Aneurysm
- Abstract
The pathogenesis and natural history of intracranial aneurysm (IA) remains poorly understood. To this end, animal models with induced cerebral vessel lesions mimicking human aneurysms have provided the ability to greatly expand our understanding. In this review, we comprehensively searched the published literature to identify studies that endogenously induced IA formation in animals. Studies that constructed aneurysms (i.e., by surgically creating a sac) were excluded. From the eligible studies, we reported information including the animal species, method for aneurysm induction, aneurysm definitions, evaluation methods, aneurysm characteristics, formation rate, rupture rate, and time course. Between 1960 and 2019, 174 articles reported endogenous animal models of IA. The majority used flow modification, hypertension, and vessel wall weakening (i.e., elastase treatment) to induce IAs, primarily in rats and mice. Most studies utilized subjective or qualitative descriptions to define experimental aneurysms and histology to study them. In general, experimental IAs resembled the pathobiology of the human disease in terms of internal elastic lamina loss, medial layer degradation, and inflammatory cell infiltration. After the early 2000s, many endogenous animal models of IA began to incorporate state-of-the-art technology, such as gene expression profiling and 9.4-T magnetic resonance imaging (MRI) in vivo imaging, to quantitatively analyze the biological mechanisms of IA. Future studies aimed at longitudinally assessing IA pathobiology in models that incorporate aneurysm growth will likely have the largest impact on our understanding of the disease. We believe this will be aided by high-resolution, small animal, survival imaging, in situ live-cell imaging, and next-generation omics technology., (© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH, DE part of Springer Nature.)
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- 2021
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32. Identification of intima-to-media signals for flow-induced vascular remodeling using correlative gene expression analysis.
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Kolega J, Poppenberg KE, Lim HW, Gutierrez LC, Veeturi SS, Siddiqui AH, Rajabzadeh-Oghaz H, and Tutino VM
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- Animals, Basilar Artery anatomy & histology, Basilar Artery physiology, Female, Gene Expression Profiling, Gene Ontology, Hemodynamics genetics, Hemodynamics physiology, Models, Animal, Models, Cardiovascular, Rabbits, Signal Transduction, Tunica Intima physiology, Tunica Media physiology, Vascular Remodeling genetics, Vascular Remodeling physiology
- Abstract
Changes in blood flow can induce arterial remodeling. Intimal cells sense flow and send signals to the media to initiate remodeling. However, the nature of such intima-media signaling is not fully understood. To identify potential signals, New Zealand white rabbits underwent bilateral carotid ligation to increase flow in the basilar artery or sham surgery (n = 2 ligated, n = 2 sham). Flow was measured by transcranial Doppler ultrasonography, vessel geometry was determined by 3D angiography, and hemodynamics were quantified by computational fluid dynamics. 24 h post-surgery, the basilar artery and terminus were embedded for sectioning. Intima and media were separately microdissected from the sections, and whole transcriptomes were obtained by RNA-seq. Correlation analysis of expression across all possible intima-media gene pairs revealed potential remodeling signals. Carotid ligation increased flow in the basilar artery and terminus and caused differential expression of 194 intimal genes and 529 medial genes. 29,777 intima-media gene pairs exhibited correlated expression. 18 intimal genes had > 200 medial correlates and coded for extracellular products. Gene ontology of the medial correlates showed enrichment of organonitrogen metabolism, leukocyte activation/immune response, and secretion/exocytosis processes. This demonstrates correlative expression analysis of intimal and medial genes can reveal novel signals that may regulate flow-induced arterial remodeling., (© 2021. The Author(s).)
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- 2021
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33. Increased Perviousness on CT for Acute Ischemic Stroke is Associated with Fibrin/Platelet-Rich Clots.
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Patel TR, Fricano S, Waqas M, Tso M, Dmytriw AA, Mokin M, Kolega J, Tomaszewski J, Levy EI, Davies JM, Snyder KV, Siddiqui AH, and Tutino VM
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- Aged, Blood Platelets pathology, Computed Tomography Angiography methods, Female, Fibrin analysis, Humans, Ischemic Stroke pathology, Male, Thrombectomy methods, Thrombosis pathology, Ischemic Stroke diagnostic imaging, Ischemic Stroke surgery, Thrombosis diagnostic imaging, Treatment Outcome
- Abstract
Background and Purpose: Clot perviousness in acute ischemic stroke is a potential CT imaging biomarker for mechanical thrombectomy efficacy. We investigated the association among perviousness, clot cellular composition, and first-pass effect., Materials and Methods: In 40 mechanical thrombectomy-treated cases of acute ischemic stroke, we calculated perviousness as the difference in clot density on CT angiography and noncontrast CT. We assessed the proportion of fibrin/platelet aggregates, red blood cells, and white blood cells on clot histopathology. We tested for linear correlation between histologic components and perviousness, differences in components between "high" and "low" pervious clots defined by median perviousness, and differences in perviousness/composition between cases that did and did not achieve a first-pass effect., Results: Perviousness significantly positively and negatively correlated with the percentage of fibrin/platelet aggregates ( P = .001) and the percentage of red blood cells ( P = .001), respectively. Higher pervious clots had significantly greater fibrin/platelet aggregate content ( P = .042). Cases that achieved a first-pass effect ( n = 14) had lower perviousness, though not significantly ( P = .055). The percentage of red blood cells was significantly higher ( P = .028) and the percentage of fibrin/platelet aggregates was significantly lower ( P = .016) in cases with a first-pass effect. There was no association between clot density on NCCT and clot composition or first-pass effect. Receiver operating characteristic analysis indicated that clot composition was the best predictor of first-pass effect (area under receiver operating characteristic curve: percentage of fibrin/platelet aggregates = 0.731, percentage of red blood cells = 0.706, perviousness = 0.668)., Conclusions: Clot perviousness on CT is associated with a higher percentage of fibrin/platelet aggregate content. Histologic data and, to a lesser degree, perviousness may have value in predicting first-pass outcome. Imaging metrics that more strongly reflect clot biology than perviousness may be needed to predict a first-pass effect with high accuracy., (© 2021 by American Journal of Neuroradiology.)
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- 2021
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34. Whole blood transcriptome biomarkers of unruptured intracranial aneurysm.
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Poppenberg KE, Li L, Waqas M, Paliwal N, Jiang K, Jarvis JN, Sun Y, Snyder KV, Levy EI, Siddiqui AH, Kolega J, Meng H, and Tutino VM
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- Case-Control Studies, Female, Humans, Intracranial Aneurysm blood, Male, Middle Aged, ROC Curve, Sequence Analysis, RNA, Support Vector Machine, Exome Sequencing, Biomarkers blood, Gene Expression Profiling methods, Intracranial Aneurysm genetics, RNA, Messenger blood
- Abstract
Background: The rupture of an intracranial aneurysm (IA) causes devastating subarachnoid hemorrhages, yet most IAs remain undiscovered until they rupture. Recently, we found an IA RNA expression signature of circulating neutrophils, and used transcriptome data to build predictive models for unruptured IAs. In this study, we evaluate the feasibility of using whole blood transcriptomes to predict the presence of unruptured IAs., Methods: We subjected RNA from peripheral whole blood of 67 patients (34 with unruptured IA, 33 without IA) to next-generation RNA sequencing. Model genes were identified using the least absolute shrinkage and selection operator (LASSO) in a random training cohort (n = 47). These genes were used to train a Gaussian Support Vector Machine (gSVM) model to distinguish patients with IA. The model was applied to an independent testing cohort (n = 20) to evaluate performance by receiver operating characteristic (ROC) curve. Gene ontology and pathway analyses investigated the underlying biology of the model genes., Results: We identified 18 genes that could distinguish IA patients in a training cohort with 85% accuracy. This SVM model also had 85% accuracy in the testing cohort, with an area under the ROC curve of 0.91. Bioinformatics reflected activation and recruitment of leukocytes, activation of macrophages, and inflammatory response, suggesting that the biomarker captures important processes in IA pathogenesis., Conclusions: Circulating whole blood transcriptomes can detect the presence of unruptured IAs. Pending additional testing in larger cohorts, this could serve as a foundation to develop a simple blood-based test to facilitate screening and early detection of IAs., Competing Interests: I have read the journal's policy and the authors of this manuscript have the following competing interests: JNJ—Principal Investigator: NIH Grant R01-AR-060604. KVS—Consulting/teaching: Canon Medical Systems Corporation, Penumbra Inc., Medtronic, Jacobs Institute. Co-Founder: Neurovascular Diagnostics, Inc. EIL—Intratech Medical Ltd. NeXtGen Biologics. Principal investigator: Medtronic US SWIFT PRIME Trials. Honoraria–Medtronic. Consultant–Pulsar Vascular. Advisory Board-Stryker, NeXtGen Biologics, MEDX, Cognition Medical. Other financial support—Abbott Vascular for carotid training sessions. AHS—Financial Interest/Investor/Stock Options/Ownership: Amnis Therapeutics, Apama Medical,BlinkTBI, Inc., Buffalo Technology Partners, Inc., Cardinal Health, Cerebrotech Medical Systems, Inc., Claret Medical, Cognition Medical, Endostream Medical, Ltd., Imperative Care, International Medical Distribution Partners, Rebound Therapeutics Corp., Silk Road Medical, StimMed, Synchron, Three Rivers Medical, Inc., Viseon Spine, Inc. Consultant/Advisory Board: Amnis Therapeutics, Boston Scientific, Canon Medical Systems USA, Inc., Cerebrotech Medical Systems, Inc., Cerenovus, Claret Medical, Corindus, Inc., Endostream Medical, Ltd., Guidepoint 15Global Consulting, Imperative Care, Integra, Medtronic, MicroVention, Northwest University—DSMB Chair for HEAT Trial, Penumbra, Rapid Medical,Rebound Therapeutics Corp., Silk Road Medical, StimMed, Stryker, Three Rivers Medical, Inc.,VasSol, W.L. Gore & Associates. National PI/Steering Committees: Cerenovus LARGE Trial and ARISE II Trial,Medtronic SWIFTPRIME and SWIFT DIRECT Trials, MicroVention FRED Trial & CONFIDENCE Study, MUSC POSITIVE Trial,Penumbra 3D Separator Trial, COMPASS Trial, INVEST Trial. Principal investigator: Cummings Foundation grant. HM—Principal investigator:NIH Grants R01-NS-091075 and R01-NS-064592. Grant support: Canon Medical Systems. Co-founder: Neurovascular Diagnostics, Inc. VMT—Principal investigator: National Science Foundation Award No. 1746694, Brain Aneurysm Foundation grant, and Center for Advanced Technology grant. Co-founder:Neurovascular Diagnostics, Inc. This does not alter our adherence to PLOS ONE policies on sharing data and materials.
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- 2020
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35. Classification models using circulating neutrophil transcripts can detect unruptured intracranial aneurysm.
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Poppenberg KE, Tutino VM, Li L, Waqas M, June A, Chaves L, Jiang K, Jarvis JN, Sun Y, Snyder KV, Levy EI, Siddiqui AH, Kolega J, and Meng H
- Subjects
- Cohort Studies, Gene Ontology, Humans, Neutrophils, ROC Curve, Intracranial Aneurysm genetics
- Abstract
Background: Intracranial aneurysms (IAs) are dangerous because of their potential to rupture. We previously found significant RNA expression differences in circulating neutrophils between patients with and without unruptured IAs and trained machine learning models to predict presence of IA using 40 neutrophil transcriptomes. Here, we aim to develop a predictive model for unruptured IA using neutrophil transcriptomes from a larger population and more robust machine learning methods., Methods: Neutrophil RNA extracted from the blood of 134 patients (55 with IA, 79 IA-free controls) was subjected to next-generation RNA sequencing. In a randomly-selected training cohort (n = 94), the Least Absolute Shrinkage and Selection Operator (LASSO) selected transcripts, from which we constructed prediction models via 4 well-established supervised machine-learning algorithms (K-Nearest Neighbors, Random Forest, and Support Vector Machines with Gaussian and cubic kernels). We tested the models in the remaining samples (n = 40) and assessed model performance by receiver-operating-characteristic (ROC) curves. Real-time quantitative polymerase chain reaction (RT-qPCR) of 9 IA-associated genes was used to verify gene expression in a subset of 49 neutrophil RNA samples. We also examined the potential influence of demographics and comorbidities on model prediction., Results: Feature selection using LASSO in the training cohort identified 37 IA-associated transcripts. Models trained using these transcripts had a maximum accuracy of 90% in the testing cohort. The testing performance across all methods had an average area under ROC curve (AUC) = 0.97, an improvement over our previous models. The Random Forest model performed best across both training and testing cohorts. RT-qPCR confirmed expression differences in 7 of 9 genes tested. Gene ontology and IPA network analyses performed on the 37 model genes reflected dysregulated inflammation, cell signaling, and apoptosis processes. In our data, demographics and comorbidities did not affect model performance., Conclusions: We improved upon our previous IA prediction models based on circulating neutrophil transcriptomes by increasing sample size and by implementing LASSO and more robust machine learning methods. Future studies are needed to validate these models in larger cohorts and further investigate effect of covariates.
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- 2020
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36. Landmark-Based Shape Analysis on Middle Cerebral Intracranial Aneurysms: A Geometric Morphometrics Approach to Infer Natural History.
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Tutino VM, Yan AJ, Veeturi SS, Patel TR, Rajabzadeh-Oghaz H, Waqas M, Siddiqui AH, Tseng J, and Kolega J
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- Aged, Disease Progression, Female, Humans, Male, Middle Aged, Intracranial Aneurysm diagnostic imaging, Middle Cerebral Artery diagnostic imaging
- Abstract
Background: Due to the scarcity of longitudinal data, the morphologic development of intracranial aneurysms (IAs) during their natural history remains poorly understood. However, longitudinal information can often be inferred from cross-sectional datasets as demonstrated by anatomists' use of geometric morphometrics to build evolutionary trees, reconstructing species inter-relationships based on morphologic landmarks., Objective: We adopted these tools to analyze cross-sectional image data and infer relationships between IA morphologies., Methods: On 3D reconstructions of 52 middle cerebral arteries (MCA) IAs (9 ruptured) and 10 IAfree MCAs (baseline geometries), 7 semi-automated landmarks were placed at the proximal parent artery and maximum height. From these, 64 additional landmarks were computationally generated to create a 71-landmark point cloud of 213 xyz coordinates. This data was normalized by Procrustes transformation and used in the principal component analysis, hierarchical clustering, and phylogenetic analyses., Results: Principal component analysis showed separation of IA-free MCA geometries and grouping of ruptured IAs from unruptured IAs. Hierarchical clustering delineated a cluster of only unruptured IAs that were significantly smaller and more spherical than clusters that had ruptured IAs. Phylogenetic classification placed ruptured IAs more distally in the tree than unruptured IAs, indicating greater shape derivation. Groups of unruptured IAs were observed, but ruptured IAs were invariably found in mixed lineages with unruptured IAs, suggesting that some pathways of shape change may be benign while others are more associated with rupture., Conclusion: Geometric morphometric analyses of larger datasets may indicate particular pathways of shape change leading toward aneurysm rupture versus stabilization., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
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- 2020
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37. Epigenetic landscapes suggest that genetic risk for intracranial aneurysm operates on the endothelium.
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Poppenberg KE, Jiang K, Tso MK, Snyder KV, Siddiqui AH, Kolega J, Jarvis JN, Meng H, and Tutino VM
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- Binding Sites, CCCTC-Binding Factor chemistry, CCCTC-Binding Factor genetics, CCCTC-Binding Factor metabolism, Case-Control Studies, DNA Methylation, Genome, Human, Genome-Wide Association Study, Histones genetics, Histones metabolism, Human Umbilical Vein Endothelial Cells, Humans, Intracranial Aneurysm pathology, Leukocytes cytology, Leukocytes metabolism, Linkage Disequilibrium, Polymorphism, Single Nucleotide, Risk Factors, Epigenesis, Genetic, Intracranial Aneurysm genetics
- Abstract
Background: Genetics play an important role in intracranial aneurysm (IA) pathophysiology. Genome-wide association studies have identified several single nucleotide polymorphisms (SNPs) that are linked to IA but how they affect disease pathobiology remains poorly understood. We used Encyclopedia of DNA Elements (ENCODE) data to investigate the epigenetic landscapes surrounding genetic risk loci to determine if IA-associated SNPs affect functional elements that regulate gene expression and if those SNPs are most likely to impact a specific type of cells., Methods: We mapped 16 highly significant IA-associated SNPs to linkage disequilibrium (LD) blocks within the human genome. Within these regions, we examined the presence of H3K4me1 and H3K27ac histone marks and CCCTC-binding factor (CTCF) and transcription-factor binding sites using chromatin immunoprecipitation-sequencing (ChIP-Seq) data. This analysis was conducted in several cell types relevant to endothelial (human umbilical vein endothelial cells [HUVECs]) and inflammatory (monocytes, neutrophils, and peripheral blood mononuclear cells [PBMCs]) biology. Gene ontology analysis was performed on genes within extended IA-risk regions to understand which biological processes could be affected by IA-risk SNPs. We also evaluated recently published data that showed differential methylation and differential ribonucleic acid (RNA) expression in IA to investigate the correlation between differentially regulated elements and the IA-risk LD blocks., Results: The IA-associated LD blocks were statistically significantly enriched for H3K4me1 and/or H3K27ac marks (markers of enhancer function) in endothelial cells but not in immune cells. The IA-associated LD blocks also contained more binding sites for CTCF in endothelial cells than monocytes, although not statistically significant. Differentially methylated regions of DNA identified in IA tissue were also present in several IA-risk LD blocks, suggesting SNPs could affect this epigenetic machinery. Gene ontology analysis supports that genes affected by IA-risk SNPs are associated with extracellular matrix reorganization and endopeptidase activity., Conclusion: These findings suggest that known genetic alterations linked to IA risk act on endothelial cell function. These alterations do not correlate with IA-associated gene expression signatures of circulating blood cells, which suggests that such signatures are a secondary response reflecting the presence of IA rather than indicating risk for IA.
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- 2019
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38. Biomarkers from circulating neutrophil transcriptomes have potential to detect unruptured intracranial aneurysms.
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Tutino VM, Poppenberg KE, Li L, Shallwani H, Jiang K, Jarvis JN, Sun Y, Snyder KV, Levy EI, Siddiqui AH, Kolega J, and Meng H
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- Aneurysm, Ruptured genetics, Databases, Genetic, Female, Gene Ontology, Humans, Intracranial Aneurysm genetics, Middle Aged, Models, Biological, Predictive Value of Tests, RNA, Messenger genetics, RNA, Messenger metabolism, Reproducibility of Results, Aneurysm, Ruptured blood, Aneurysm, Ruptured diagnosis, Biomarkers blood, Intracranial Aneurysm blood, Intracranial Aneurysm diagnosis, Neutrophils metabolism, Transcriptome genetics
- Abstract
Background: Intracranial aneurysms (IAs) are dangerous because of their potential to rupture and cause deadly subarachnoid hemorrhages. Previously, we found significant RNA expression differences in circulating neutrophils between patients with unruptured IAs and aneurysm-free controls. Searching for circulating biomarkers for unruptured IAs, we tested the feasibility of developing classification algorithms that use neutrophil RNA expression levels from blood samples to predict the presence of an IA., Methods: Neutrophil RNA extracted from blood samples from 40 patients (20 with angiography-confirmed unruptured IA, 20 angiography-confirmed IA-free controls) was subjected to next-generation RNA sequencing to obtain neutrophil transcriptomes. In a randomly-selected training cohort of 30 of the 40 samples (15 with IA, 15 controls), we performed differential expression analysis. Significantly differentially expressed transcripts (false discovery rate < 0.05, fold change ≥ 1.5) were used to construct prediction models for IA using four well-known supervised machine-learning approaches (diagonal linear discriminant analysis, cosine nearest neighbors, nearest shrunken centroids, and support vector machines). These models were tested in a testing cohort of the remaining 10 neutrophil samples from the 40 patients (5 with IA, 5 controls), and model performance was assessed by receiver-operating-characteristic (ROC) curves. Real-time quantitative polymerase chain reaction (PCR) was used to corroborate expression differences of a subset of model transcripts in neutrophil samples from a new, separate validation cohort of 10 patients (5 with IA, 5 controls)., Results: The training cohort yielded 26 highly significantly differentially expressed neutrophil transcripts. Models using these transcripts identified IA patients in the testing cohort with accuracy ranging from 0.60 to 0.90. The best performing model was the diagonal linear discriminant analysis classifier (area under the ROC curve = 0.80 and accuracy = 0.90). Six of seven differentially expressed genes we tested were confirmed by quantitative PCR using isolated neutrophils from the separate validation cohort., Conclusions: Our findings demonstrate the potential of machine-learning methods to classify IA cases and create predictive models for unruptured IAs using circulating neutrophil transcriptome data. Future studies are needed to replicate these findings in larger cohorts.
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- 2018
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39. Circulating neutrophil transcriptome may reveal intracranial aneurysm signature.
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Tutino VM, Poppenberg KE, Jiang K, Jarvis JN, Sun Y, Sonig A, Siddiqui AH, Snyder KV, Levy EI, Kolega J, and Meng H
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- Aged, Aged, 80 and over, Aneurysm, Ruptured genetics, Biomarkers blood, Cerebral Angiography, Cohort Studies, Computational Biology, Female, Gene Expression Profiling, Humans, Intracranial Aneurysm blood, Intracranial Aneurysm metabolism, Male, Middle Aged, Neutrophils metabolism, Risk Factors, Transcriptome, Intracranial Aneurysm genetics
- Abstract
Background: Unruptured intracranial aneurysms (IAs) are typically asymptomatic and undetected except for incidental discovery on imaging. Blood-based diagnostic biomarkers could lead to improvements in IA management. This exploratory study examined circulating neutrophils to determine whether they carry RNA expression signatures of IAs., Methods: Blood samples were collected from patients receiving cerebral angiography. Eleven samples were collected from patients with IAs and 11 from patients without IAs as controls. Samples from the two groups were paired based on demographics and comorbidities. RNA was extracted from isolated neutrophils and subjected to next-generation RNA sequencing to obtain differential expressions for identification of an IA-associated signature. Bioinformatics analyses, including gene set enrichment analysis and Ingenuity Pathway Analysis, were used to investigate the biological function of all differentially expressed transcripts., Results: Transcriptome profiling identified 258 differentially expressed transcripts in patients with and without IAs. Expression differences were consistent with peripheral neutrophil activation. An IA-associated RNA expression signature was identified in 82 transcripts (p<0.05, fold-change ≥2). This signature was able to separate patients with and without IAs on hierarchical clustering. Furthermore, in an independent, unpaired, replication cohort of patients with IAs (n = 5) and controls (n = 5), the 82 transcripts separated 9 of 10 patients into their respective groups., Conclusion: Preliminary findings show that RNA expression from circulating neutrophils carries an IA-associated signature. These findings highlight a potential to use predictive biomarkers from peripheral blood samples to identify patients with IAs.
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- 2018
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40. 9.4T Magnetic Resonance Imaging of the Mouse Circle of Willis Enables Serial Characterization of Flow-Induced Vascular Remodeling by Computational Fluid Dynamics.
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Tutino VM, Rajabzadeh-Oghaz H, Chandra AR, Gutierrez LC, Schweser F, Preda M, Chien A, Vakharia K, Ionita C, Siddiqui A, and Kolega J
- Subjects
- Animals, Disease Models, Animal, Hemodynamics physiology, Intracranial Aneurysm pathology, Ligation adverse effects, Male, Mice, Cerebrovascular Circulation physiology, Circle of Willis diagnostic imaging, Imaging, Three-Dimensional, Intracranial Aneurysm diagnostic imaging, Magnetic Resonance Imaging methods, Vascular Remodeling physiology
- Abstract
Background: The neurovasculature dynamically responds to changes in cerebral blood flow by vascular remodeling processes. Serial imaging studies in mouse models could help characterize pathologic and physiologic flow-induced remodeling of the Circle of Willis (CoW)., Method: We induced flow-driven pathologic cerebral vascular remodeling in the CoW of mice (n=3) by ligation of the left Common Carotid Artery (CCA), and the right external carotid and pterygopalatine arteries, increasing blood flow through the basilar and the right internal carotid arteries. One additional mouse was used as a wild-type control. Magnetic Resonance Imaging (MRI) at 9.4 Tesla (T) was used to serially image the mouse CoW over three months, and to obtain threedimensional images for use in Computational Fluid Dynamic (CFD) simulations. Terminal vascular corrosion casting and scanning electron microscope imaging were used to identify regions of macroscopic and microscopic arterial damage., Results: We demonstrated the feasibility of detecting and serially measuring pathologic cerebral vascular changes in the mouse CoW, specifically in the anterior vasculature. These changes were characterized by bulging and increased vessel tortuosity on the anterior cerebral artery and aneurysm- like remodeling at the right olfactory artery origin. The resolution of the 9.4T system further allowed us to perform CFD simulations in the anterior CoW, which showed a correlation between elevated wall shear stress and pathological vascular changes., Conclusion: In the future, serial high-resolution MRI could be useful for characterizing the flow environments corresponding to other pathologic remodeling processes in the mouse CoW, such as aneurysm formation, subarachnoid hemorrhage, and ischemia., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
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- 2018
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41. Assessment of Vascular Geometry for Bilateral Carotid Artery Ligation to Induce Early Basilar Terminus Aneurysmal Remodeling in Rats.
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Tutino VM, Liaw N, Spernyak JA, Ionita CN, Siddiqui AH, Kolega J, and Meng H
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- Animals, Disease Models, Animal, Female, Imaging, Three-Dimensional, Ligation adverse effects, Magnetic Resonance Angiography, Magnetic Resonance Imaging, Rabbits, Rats, Rats, Sprague-Dawley, Tomography Scanners, X-Ray Computed, Basilar Artery pathology, Carotid Stenosis complications, Intracranial Aneurysm diagnosis, Intracranial Aneurysm etiology
- Abstract
Bilateral common carotid artery (CCA) ligation in rabbits is a model for basilar terminus (BT) aneurysm formation. We asked if this model could be replicated in rats. Fourteen female Sprague Dawley rats underwent bilateral CCA ligation (n=8) or sham surgery (n=6). After 7 days, 5 ligated and 3 sham rats were euthanized for histological evaluation of BT aneurysm formation, while the remaining rats were imaged with magnetic resonance angiography, euthanized, and subjected to corrosion casting of the Circle of Willis (CoW). 3D micro computed tomography images of CoW casts were used for flow simulations at the rat BT, and electron micrographs of the casts were analyzed for aneurysmal and morphological changes. Results from these analyses were compared to rabbit model data (n=10 ligated and n=6 sham). Bilateral CCA ligation did not produce aneurysmal damage at the rat BT. While the surgical manipulation increased rat basilar artery flow, fluid dynamics simulations showed that the initial hemodynamic stress at the rat BT was significantly less than in rabbits. Rats also exhibited fewer morphological and pathological changes (minor changes only occurred in the posterior CoW) than rabbits, which had drastic changes throughout the CoW. A comparison of CoW anatomies demonstrated a greater number of branching arteries at the BT, larger CoW arteries in relation to basilar artery, and a steeper BT bifurcation angle in the rat. These differences could account for the lower hemodynamic stress at the BT and in the cerebrovasculature of the rat. In conclusion, bilateral CCA ligation in rats does not recapitulate the rabbit model of early flow-induced BT aneurysm. We suspect that the different CoW morphology of the rat lessens hemodynamic insults, thereby diminishing flow-induced aneurysmal remodeling.
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- 2016
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42. Hypertension and Estrogen Deficiency Augment Aneurysmal Remodeling in the Rabbit Circle of Willis in Response to Carotid Ligation.
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Tutino VM, Mandelbaum M, Takahashi A, Pope LC, Siddiqui A, Kolega J, and Meng H
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- Animals, Carotid Artery Diseases complications, Cerebrovascular Circulation, Disease Models, Animal, Female, Hypertension pathology, Intracranial Aneurysm etiology, Ligation, Microscopy, Electron, Scanning, Rabbits, Severity of Illness Index, Carotid Artery Diseases pathology, Circle of Willis pathology, Estrogens deficiency, Hypertension complications, Intracranial Aneurysm pathology
- Abstract
Increased cerebral blood flow has been shown to induce pathological structural changes in the Circle of Willis (CoW) in experimental models. Previously, we reported flow-induced aneurysm-like remodeling in the CoW secondary to flow redistribution after bilateral common carotid artery (CCA) ligation in rabbits. In the current study, we tested the hypothesis that loading rabbits with biological risk factors for vascular disease would increase flow-induced aneurysmal remodeling in the CoW. In the same series as the previously-reported bilateral CCA-ligation-alone (n = 6) and sham surgery (n = 3) groups, eight additional female rabbits (the experimental group in this study) were subjected to two risk factors for intracranial aneurysm (hypertension and estrogen deficiency) and then bilateral CCA ligation. Upon euthanasia at 6 months, vascular corrosion casts of the CoW were created and analyzed by scanning electron microscopy for morphological changes and aneurysmal damage. In rabbits with hypertension and estrogen deficiency, arterial caliber increased throughout the CoW, similar to rabbits with CCA ligation alone. However, aneurysmal remodeling (i.e., local bulging) in the CoW was significantly greater than in CCA-ligation-only rabbits and was more widespread, presenting in regions that did not show aneurysmal changes after CCA ligation alone. Furthermore, hypertension and estrogen deficiency caused greater increases in vessel length and tortuosity. These results suggest that hypertension and estrogen deficiency make the CoW more vulnerable to flow-induced aneurysmal remodeling and tortuosity. We propose they do so by lowering the tolerance of vascular tissue to hemodynamic forces caused by CCA ligation, thus lowering the threshold necessary to incite vascular damage., (© 2015 Wiley Periodicals, Inc.)
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- 2015
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43. Endothelial nitric oxide synthase and superoxide mediate hemodynamic initiation of intracranial aneurysms.
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Liaw N, Fox JM, Siddiqui AH, Meng H, and Kolega J
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- Animals, Disease Models, Animal, Female, Intracranial Aneurysm metabolism, Matrix Metalloproteinases, Membrane-Associated metabolism, Myocytes, Smooth Muscle metabolism, Myocytes, Smooth Muscle pathology, Rabbits, Reactive Oxygen Species metabolism, Spin Labels, Cyclic N-Oxides administration & dosage, Intracranial Aneurysm pathology, NG-Nitroarginine Methyl Ester administration & dosage, Nitric Oxide Synthase metabolism, Protein Synthesis Inhibitors administration & dosage, Superoxides metabolism
- Abstract
Background: Hemodynamic insults at arterial bifurcations are believed to play a critical role in initiating intracranial aneurysms. Recent studies in a rabbit model indicate that aneurysmal damage initiates under specific wall shear stress conditions when smooth muscle cells (SMCs) become pro-inflammatory and produce matrix metalloproteinases (MMPs). The mechanisms leading to SMC activation and MMP production during hemodynamic aneurysm initiation are unknown. The goal is to determine if nitric oxide and/or superoxide induce SMC changes, MMP production and aneurysmal remodeling following hemodynamic insult., Methods: Bilateral common carotid artery ligation was performed on rabbits (n = 19, plus 5 sham operations) to induce aneurysmal damage at the basilar terminus. Ligated animals were treated with the nitric oxide synthase (NOS) inhibitor LNAME (n = 7) or the superoxide scavenger TEMPOL (n = 5) and compared to untreated animals (n = 7). Aneurysm development was assessed histologically 5 days after ligation. Changes in NOS isoforms, peroxynitrite, reactive oxygen species (ROS), MMP-2, MMP-9, and smooth muscle α-actin were analyzed by immunohistochemistry., Results: LNAME attenuated ligation-induced IEL loss, media thinning and bulge formation. In untreated animals, immunofluorescence showed increased endothelial NOS (eNOS) after ligation, but no change in inducible or neuronal NOS. Furthermore, during aneurysm initiation ROS increased in the media, but not the intima, and there was no change in peroxynitrite. In LNAME-treated animals, ROS production did not change. Together, this suggests that eNOS is important for aneurysm initiation but not by producing superoxide. TEMPOL treatment reduced aneurysm development, indicating that the increased medial superoxide is also necessary for aneurysm initiation. LNAME and TEMPOL treatment in ligated animals restored α-actin and decreased MMPs, suggesting that eNOS and superoxide both lead to SMC de-differentiation and MMP production., Conclusion: Aneurysm-inducing hemodynamics lead to increased eNOS and superoxide, which both affect SMC phenotype, increasing MMP production and aneurysmal damage.
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- 2014
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44. Aneurysmal remodeling in the circle of Willis after carotid occlusion in an experimental model.
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Tutino VM, Mandelbaum M, Choi H, Pope LC, Siddiqui A, Kolega J, and Meng H
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- Animals, Carotid Artery Diseases complications, Disease Models, Animal, Female, Intracranial Aneurysm etiology, Microscopy, Electron, Scanning, Rabbits, Severity of Illness Index, Carotid Artery Diseases pathology, Carotid Artery, Common ultrastructure, Circle of Willis ultrastructure, Intracranial Aneurysm pathology
- Abstract
Carotid occlusions are associated with de novo intracranial aneurysm formation in clinical case reports, but this phenomenon is not widely studied. We performed bilateral carotid ligation (n=9) in rabbits to simulate carotid occlusion, and sham surgery (n=3) for control. Upon euthanasia (n=3 at 5 days, n=6 at 6 months post ligation, and n=3 at 5 days after sham operation), vascular corrosion casts of the circle of Willis (CoW) were created. Using scanning electron microscopy, we quantified gross morphologic, macroscopic, and microscopic changes on the endocasts and compared findings with histologic data. At 5 days, CoW arteries of ligated animals increased caliber. The posterior communicating artery (PCom) increased length and tortuosity, and the ophthalmic artery (OA) origin presented preaneurysmal bulges. At 6 months, calibers were unchanged from 5 days, PComs further increased tortuosity while presenting segmental dilations, and the OA origin and basilar terminus presented preaneurysmal bulges. This exploratory study provides evidence that flow increase after carotid occlusion produces both compensatory arterial augmentation and pathologic remodeling such as tortuosity and saccular/fusiform aneurysm. Our findings may have considerable clinical implications, as these lesser-known consequences should be considered when managing patients with carotid artery disease or choosing carotid ligation as a therapeutic option.
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- 2014
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45. Differential gene expression by endothelial cells under positive and negative streamwise gradients of high wall shear stress.
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Dolan JM, Meng H, Sim FJ, and Kolega J
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- Animals, Aorta, Apoptosis, Cattle, Cell Line, Cell Proliferation, Female, Gene Expression, Intracranial Aneurysm metabolism, Models, Cardiovascular, Rabbits, Regional Blood Flow, Shear Strength, Stress, Physiological, ADAM Proteins biosynthesis, Endothelial Cells metabolism, Hemodynamics, Ki-67 Antigen biosynthesis, Stress, Mechanical
- Abstract
Flow impingement at arterial bifurcations causes high frictional force [or wall shear stress (WSS)], and flow acceleration and deceleration in the branches create positive and negative streamwise gradients in WSS (WSSG), respectively. Intracranial aneurysms tend to form in regions with high WSS and positive WSSG. However, little is known about the responses of endothelial cells (ECs) to either positive or negative WSSG under high WSS conditions. We used cDNA microarrays to profile gene expression in cultured ECs exposed to positive or negative WSSG for 24 h in a flow chamber where WSS varied between 3.5 and 28.4 Pa. Gene ontology and biological pathway analysis indicated that positive WSSG favored proliferation, apoptosis, and extracellular matrix processing while decreasing expression of proinflammatory genes. To determine if similar responses occur in vivo, we examined EC proliferation and expression of the matrix metalloproteinase ADAMTS1 under high WSS and WSSG created at the basilar terminus of rabbits after bilateral carotid ligation. Precise hemodynamic conditions were determined by computational fluid dynamic simulations from three-dimensional angiography and mapped on immunofluorescence staining for the proliferation marker Ki-67 and ADAMTS1. Both proliferation and ADAMTS1 were significantly higher in ECs under positive WSSG than in adjacent regions of negative WSSG. Our results indicate that WSSG elicits distinct EC gene expression profiles and particular biological pathways including increased cell proliferation and matrix processing. Such EC responses may be important in understanding the mechanisms of intracranial aneurysm initiation at regions of high WSS and positive WSSG.
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- 2013
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46. A critical role for proinflammatory behavior of smooth muscle cells in hemodynamic initiation of intracranial aneurysm.
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Mandelbaum M, Kolega J, Dolan JM, Siddiqui AH, and Meng H
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- Animals, Down-Regulation drug effects, Doxycycline pharmacology, Female, Inflammation immunology, Inflammation metabolism, Inflammation pathology, Inflammation physiopathology, Intracranial Aneurysm immunology, Intracranial Aneurysm metabolism, Macrophages drug effects, Macrophages immunology, Macrophages metabolism, Matrix Metalloproteinase 2 metabolism, Matrix Metalloproteinase 9 metabolism, Muscle Contraction drug effects, Myocytes, Smooth Muscle drug effects, Rabbits, Up-Regulation drug effects, Hemodynamics, Intracranial Aneurysm pathology, Intracranial Aneurysm physiopathology, Myocytes, Smooth Muscle metabolism
- Abstract
Background: Intracranial aneurysm initiation is poorly understood, although hemodynamic insult is believed to play an important role in triggering the pathology. It has recently been found in a rabbit model that while macrophages are absent during hemodynamic aneurysm initiation, matrix metalloproteinases (MMPs) are elevated and co-localize with smooth muscle cells (SMCs). This study investigates whether SMCs play a mechanistic role in aneurysm initiation triggered by hemodynamics., Methods: Aneurysmal damage was induced at the basilar terminus via bilateral common carotid artery ligation in rabbits (n = 45, plus 7 sham controls). 16 ligated rabbits were treated with doxycycline to inhibit MMPs, 7 received clodronate liposomes to deplete circulating monocytes, and the rest received no drug. Effects of the treatments on aneurysm development were assessed histologically 5 days and 6 months after ligation. MMP production and expression of inflammatory markers by SMCs was monitored by immunohistochemistry and in situ hybridization., Results: Treatment with doxycycline attenuated aneurysmal development examined at 5 days and 6 months, suggesting that MMPs contribute to aneurysm initiation. However, systemic depletion of macrophages did not decrease MMPs or suppress aneurysmal development. Immunofluorescence showed that during aneurysm initiation MMP-2 and MMP-9 were distributed in SMCs, and in situ hybridization indicated that they were transcribed by SMCs. In regions of early aneurysmal lesion, SMCs exhibited decreased expression of smooth muscle actin and increased NF-κB and MCP-1 expressions., Conclusions: During aneurysm initiation triggered by hemodynamics, SMCs rather than macrophages are responsible for MMP production that is critical for aneurysmal lesion development. These SMCs exhibit proinflammatory behavior.
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- 2013
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47. Intracranial aneurysms occur more frequently at bifurcation sites that typically experience higher hemodynamic stresses.
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Alfano JM, Kolega J, Natarajan SK, Xiang J, Paluch RA, Levy EI, Siddiqui AH, and Meng H
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- Animals, Diagnosis, Computer-Assisted, Humans, Hydrodynamics, Middle Cerebral Artery physiopathology, Circle of Willis physiopathology, Hemodynamics physiology, Intracranial Aneurysm physiopathology
- Abstract
Background: Intracranial aneurysms (IAs) occur more frequently at certain bifurcations than at others. Hemodynamic stress, which promotes aneurysm formation in animal models, also differs among bifurcations, depending on flow and vessel geometry., Objective: To determine whether locations that are more likely to develop IAs experience different hemodynamic stresses that might contribute to higher IA susceptibility., Methods: We characterized the hemodynamic microenvironment at 10 sites in or around the circle of Willis where IAs commonly occur and examined statistical relationships between hemodynamic factors and the tendency for a site to form IAs. The tendency for each site to develop IAs was quantified on the basis of the site distribution from systematic literature analysis of 19 reports including 26418 aneurysms. Hemodynamic parameters for these sites were derived from image-based computational fluid dynamics of 114 cerebral bifurcations from 31 individuals. Wall shear stress and its spatial gradient were calculated in the impact zone surrounding the bifurcation apex. Linear and exponential regression analyses evaluated correlations between the tendency for IA formation and the typical hemodynamics of a site., Results: IA susceptibility significantly correlated with the magnitudes of wall shear stress and positive wall shear stress gradient within the hemodynamic impact zone calculated for each site., Conclusion: IAs occur more frequently at cerebral bifurcations that typically experience higher hemodynamic shear stress and stronger flow acceleration, conditions previously shown to promote aneurysm initiation in animals.
- Published
- 2013
- Full Text
- View/download PDF
48. High wall shear stress and spatial gradients in vascular pathology: a review.
- Author
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Dolan JM, Kolega J, and Meng H
- Subjects
- Animals, Arteries pathology, Arteries physiopathology, Endothelial Cells pathology, Endothelial Cells physiology, Humans, Stress, Mechanical, Vascular Diseases pathology, Vascular Diseases physiopathology
- Abstract
Cardiovascular pathologies such as intracranial aneurysms (IAs) and atherosclerosis preferentially localize to bifurcations and curvatures where hemodynamics are complex. While extensive knowledge about low wall shear stress (WSS) has been generated in the past, due to its strong relevance to atherogenesis, high WSS (typically >3 Pa) has emerged as a key regulator of vascular biology and pathology as well, receiving renewed interests. As reviewed here, chronic high WSS not only stimulates adaptive outward remodeling, but also contributes to saccular IA formation (at bifurcation apices or outer curves) and atherosclerotic plaque destabilization (in stenosed vessels). Recent advances in understanding IA pathogenesis have shed new light on the role of high WSS in pathological vascular remodeling. In complex geometries, high WSS can couple with significant spatial WSS gradient (WSSG). A combination of high WSS and positive WSSG has been shown to trigger aneurysm initiation. Since endothelial cells (ECs) are sensors of WSS, we have begun to elucidate EC responses to high WSS alone and in combination with WSSG. Understanding such responses will provide insight into not only aneurysm formation, but also plaque destabilization and other vascular pathologies and potentially lead to improved strategies for disease management and novel targets for pharmacological intervention.
- Published
- 2013
- Full Text
- View/download PDF
49. Newtonian viscosity model could overestimate wall shear stress in intracranial aneurysm domes and underestimate rupture risk.
- Author
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Xiang J, Tremmel M, Kolega J, Levy EI, Natarajan SK, and Meng H
- Subjects
- Aged, Carotid Artery, Internal pathology, Female, Humans, Intracranial Aneurysm diagnosis, Male, Middle Aged, Rheology methods, Risk Factors, Viscosity, Aneurysm, Ruptured prevention & control, Carotid Artery, Internal physiopathology, Intracranial Aneurysm physiopathology, Models, Cardiovascular, Shear Strength physiology, Stress, Mechanical
- Abstract
Objective: Computational fluid dynamics (CFD) simulations of intracranial aneurysm hemodynamics usually adopt the simplification of the Newtonian blood rheology model. A study was undertaken to examine whether such a model affects the predicted hemodynamics in realistic intracranial aneurysm geometries., Methods: Pulsatile CFD simulations were carried out using the Newtonian viscosity model and two non-Newtonian models (Casson and Herschel-Bulkley) in three typical internal carotid artery saccular aneurysms (A, sidewall, oblong-shaped with a daughter sac; B, sidewall, quasi-spherical; C, near-spherical bifurcation). For each aneurysm model the surface distributions of shear rate, blood viscosity and wall shear stress (WSS) predicted by the three rheology models were compared., Results: All three rheology models produced similar intra-aneurysmal flow patterns: aneurysm A had a slowly recirculating secondary vortex near the dome whereas aneurysms B and C contained only a large single vortex. All models predicted similar shear rate, blood viscosity and WSS in parent vessels of all aneurysms and in the sacs of B and C. However, large discrepancies in shear rate, viscosity and WSS among predictions by the various rheology models were found in the dome area of A where the flow was relatively stagnant. Here the Newtonian model predicted higher shear rate and WSS values and lower blood viscosity than the two non-Newtonian models., Conclusions: The Newtonian fluid assumption can underestimate viscosity and overestimate shear rate and WSS in regions of stasis or slowly recirculating secondary vortices, typically found at the dome in elongated or complex-shaped saccular aneurysms as well as in aneurysms following endovascular treatment. Because low shear rates and low WSS in such flow conditions indicate a high propensity for thrombus formation and rupture, CFD based on the Newtonian assumption may underestimate the propensity of these events.
- Published
- 2012
- Full Text
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50. A role for microtubules in endothelial cell protrusion in three-dimensional matrices.
- Author
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Martins GG and Kolega J
- Subjects
- Animals, Cattle, Cell Culture Techniques, Cell Movement, Cells, Cultured, Collagen metabolism, Endothelial Cells enzymology, Microtubules genetics, Signal Transduction, rho-Associated Kinases genetics, rho-Associated Kinases metabolism, Endothelial Cells cytology, Endothelial Cells metabolism, Extracellular Matrix metabolism, Microtubules metabolism
- Abstract
Background Information: Most cells reside in vivo in a three-dimensional (3D) environment surrounded by extracellular matrix and other neighbouring cells, conditions that are different from those found by cells cultured in vitro on two-dimensional (2D) substrata. Cell morphology and behaviour are very different under these two different conditions, but the structural basis for these differences is still not understood, especially the role of microtubules (MTs). To address this issue, we studied the early spreading behaviour of bovine aortic endothelial cells (BAECs) cultured in 3D collagen matrices and on 2D substrata, in the presence of MT-disrupting drugs., Results: We found that depolymerisation of MTs greatly reduces the ability of BAECs to form large and stable protrusions inside 3D collagen matrices, an effect that is less pronounced when the cells are cultured on 2D substrata. Colcemid-treated BAECs inside 3D matrices begin assembling protrusions and pull on the matrix, but they fail to extend those protrusions deep into the matrix. It has been previously reported that MT disruption affects Rho signalling which may result in increased cell rigidity and adhesiveness to 2D matrices. Accordingly, we demonstrate that colcemid treatment indeed leads to activation of Rho-kinase (ROCK) targets, which in turn results in activation of regulatory myosin light chains, and that blocking of ROCK mitigates some of the effects of MT disruption in cell spreading in 3D., Conclusions: Our results show that MT depolymerisation is particularly disruptive when cells interact with pliable 3D matrices, suggesting a role for MTs and the Rho pathway in the fine-tuning of contractile and adhesive forces necessary to sustain cell motility in vivo., (Copyright © 2012 Soçiété Francaise des Microscopies and Société de Biologie Cellulaire de France.)
- Published
- 2012
- Full Text
- View/download PDF
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