13 results on '"Kolinger, Guilherme D."'
Search Results
2. Unsupervised Pattern Analysis to Differentiate Multiple Sclerosis Phenotypes Using Principal Component Analysis on Various MRI Sequences.
- Author
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van der Weijden, Chris W. J., Pitombeira, Milena S., Peretti, Débora E., Campanholo, Kenia R., Kolinger, Guilherme D., Rimkus, Carolina M., Buchpiguel, Carlos Alberto, Dierckx, Rudi A. J. O., Renken, Remco J., Meilof, Jan F., de Vries, Erik F. J., and de Paula Faria, Daniele
- Subjects
MAGNETIZATION transfer ,PRINCIPAL components analysis ,IMAGE analysis ,MULTIPLE sclerosis ,INDIVIDUALIZED medicine - Abstract
Background: Multiple sclerosis (MS) has two main phenotypes: relapse-remitting MS (RRMS) and progressive MS (PMS), distinguished by disability profiles and treatment response. Differentiating them using conventional MRI is challenging. Objective: This study explores the use of scaled subprofile modelling using principal component analysis (SSM/PCA) on MRI data to distinguish between MS phenotypes. Methods: MRI scans were performed on patients with RRMS (n = 30) and patients with PMS (n = 20), using the standard sequences T
1 w, T2 w, T2 w-FLAIR, and the myelin-sensitive sequences magnetisation transfer (MT) ratio (MTR), quantitative MT (qMT), inhomogeneous MT ratio (ihMTR), and quantitative inhomogeneous MT (qihMT). Results: SSM/PCA analysis of qihMT images best differentiated PMS from RRMS, with the highest specificity (87%) and positive predictive value (PPV) (83%), but a lower sensitivity (67%) and negative predictive value (NPV) (72%). Conversely, T1 w data analysis showed the highest sensitivity (93%) and NPV (89%), with a lower PPV (67%) and specificity (53%). Phenotype classification agreement between T1 w and qihMT was observed in 57% of patients. In the subset with concordant classifications, the sensitivity, specificity, PPV, and NPV were 100%, 88%, 90%, and 100%, respectively. Conclusions: SSM/PCA on MRI data revealed distinctive patterns for MS phenotypes. Optimal discrimination occurred with qihMT and T1 w sequences, with qihMT identifying PMS and T1 w identifying RRMS. When qihMT and T1 w analyses align, MS phenotype prediction improves. [ABSTRACT FROM AUTHOR]- Published
- 2024
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- View/download PDF
3. A dual-time-window protocol to reduce acquisition time of dynamic tau PET imaging using [18F]MK-6240
- Author
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Kolinger, Guilherme D., Vállez García, David, Lohith, Talakad G., Hostetler, Eric D., Sur, Cyrille, Struyk, Arie, Boellaard, Ronald, and Koole, Michel
- Published
- 2021
- Full Text
- View/download PDF
4. Repeatability of [18F]FDG PET/CT total metabolic active tumour volume and total tumour burden in NSCLC patients
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Kolinger, Guilherme D., Vállez García, David, Kramer, Gerbrand M., Frings, Virginie, Smit, Egbert F., de Langen, Adrianus J., Dierckx, Rudi A. J. O., Hoekstra, Otto S., and Boellaard, Ronald
- Published
- 2019
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5. Effects of tracer uptake time in non-small cell lung cancer 18F-FDG PET radiomics
- Author
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Kolinger, Guilherme D., Garc, David Vallez, Kramer, Gerbrand Maria, Frings, Virginie, Zwezerijnen, Gerben J. C., Smit, Egbert F., de Langen, Adrianus Johannes, Buvat, Irene, Boellaard, Ronald, Gastroenterology and hepatology, Radiology and nuclear medicine, CCA - Imaging and biomarkers, Pulmonary medicine, Intensive care medicine, Amsterdam Neuroscience - Brain Imaging, Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE), Guided Treatment in Optimal Selected Cancer Patients (GUTS), AII - Cancer immunology, CCA - Cancer Treatment and quality of life, CCA - Cancer biology and immunology, University of Groningen [Groningen], Amsterdam UMC - Amsterdam University Medical Center, Antoni van Leeuwenhoek Hospital, Laboratoire d'Imagerie Translationnelle en Oncologie (LITO ), Institut Curie [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM), and Buvat, Irène
- Subjects
[SDV.IB.IMA] Life Sciences [q-bio]/Bioengineering/Imaging ,PET ,Radiomics ,Texture analysis ,[SDV.IB.IMA]Life Sciences [q-bio]/Bioengineering/Imaging ,DUAL-TIME-POINT ,Radiology, Nuclear Medicine and imaging ,Repeatability ,Oncology: Lung - Abstract
International audience; PET radiomics applied to oncology allow the measurement of intratumoral heterogeneity. This quantification can be affected by image protocols; hence, there is an increased interest in understanding how radiomic expression on PET images is affected by different imaging conditions. To address that interest, this study explored how radiomic features are affected by changes in 18F-FDG uptake time, image reconstruction, lesion delineation, and radiomic binning settings. Methods: Ten non-small cell lung cancer patients underwent 18F-FDG PET on 2 consecutive days. On each day, scans were obtained at 60 and 90 min after injection and reconstructed following EARL version 1 and with point-spread-function resolution modeling (PSF-EARL2). Lesions were delineated with an SUV threshold of 4.0, with 40% of SUVmax, and with a contrast-based isocontour. PET image intensity was discretized with both a fixed bin width (FBW) and a fixed bin number before the calculation of the radiomic features. Repeatability of features was measured with the intraclass correlation coefficient, and the change in feature value over time was calculated as a function of its repeatability. Features were then classified into use-case scenarios based on their repeatability and susceptibility to tracer uptake time. Results: With PSF-EARL2 reconstruction, 40% of SUVmax lesion delineation, and FBW intensity discretization, most features (94%) were repeatable at both uptake times (intraclass correlation coefficient > 0.9), 35% being classified for dual-time-point use cases as being sensitive to changes in uptake time, 39% were classified for cross-sectional studies with an unclear dependency on time, 20% were classified for cross-sectional use while being robust to uptake time changes, and 6% were discarded for poor repeatability. EARL version 1 images had 1 fewer repeatable feature (neighborhood gray-level different matrix coarseness) than PSF-EARL2; the contrast-based delineation had the poorest repeatability of the delineation methods, with 45% of features being discarded; and fixed bin number resulted in lower repeatability than FBW (45% and 6% of features were discarded, respectively). Conclusion: Repeatability was maximized with PSF-EARL2 reconstruction, lesion delineation at 40% of SUVmax, and FBW intensity discretization. On the basis of their susceptibility to uptake time, radiomic features were classified into specific non-small cell lung cancer PET radiomics use cases.
- Published
- 2022
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6. Effects of Tracer Uptake Time in Non–Small Cell Lung Cancer 18F-FDG PET Radiomics
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Kolinger, Guilherme D., primary, García, David Vállez, additional, Kramer, Gerbrand Maria, additional, Frings, Virginie, additional, Zwezerijnen, Gerben J.C., additional, Smit, Egbert F., additional, de Langen, Adrianus Johannes, additional, Buvat, Irène, additional, and Boellaard, Ronald, additional
- Published
- 2021
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7. Additional file 1 of A dual-time-window protocol to reduce acquisition time of dynamic tau PET imaging using [18F]MK-6240
- Author
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Kolinger, Guilherme D., Vállez García, David, Lohith, Talakad G., Hostetler, Eric D., Sur, Cyrille, Struyk, Arie, Boellaard, Ronald, and Koole, Michel
- Abstract
Additional file 1. Fig S1: Correlation between Reference Logan (Ref Logan) and 2 Tissue Compartment Model (2TCM) Distribution Volume Ratios (DVR), both calculated relative to the cerebellar cortex using 120 min Time Activity Curves (TACs). For the Ref Logan DVR different approaches to estimate k2’ were considered.
- Published
- 2021
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8. Additional file 3 of A dual-time-window protocol to reduce acquisition time of dynamic tau PET imaging using [18F]MK-6240
- Author
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Kolinger, Guilherme D., Vállez García, David, Lohith, Talakad G., Hostetler, Eric D., Sur, Cyrille, Struyk, Arie, Boellaard, Ronald, and Koole, Michel
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sense organs ,skin and connective tissue diseases - Abstract
Additional file 3. Tables with a detailed overview of the bias for the different quantification methods induced by either perfusion changes or non-compliance with the scanning protocol. Table S1: Bias on Reference Logan DVR due to perfusion changes with constant R1; pooling target regions. Table S2: Bias on Reference Logan DVR due to perfusion changes with constant R1. Table S3: Bias on Reference Logan DVR due to perfusion changes with variable R1; pooling target regions. Table S4: Bias on Reference Logan DVR due to perfusion changes with variable R1. Table S5: Bias on Reference Logan DVR due to implementation of the dual-time-window protocol; pooling target regions. Table S6: Bias on Reference Logan DVR due to implementation of the dual-time-window protocol. Table S7: Bias on Reference Logan DVR from DTW TAC due to perfusion changes with constant R1; pooling target regions. Table S8: Bias on Reference Logan DVR from DTW TAC due to perfusion changes with constant R1. Table S9: Bias on Reference Logan DVR from DTW TAC due to perfusion changes with variable R1; pooling target regions. Table S10: Bias on Reference Logan DVR from DTW TAC due to perfusion changes with variable R1. Table S11: Bias on Reference Logan DVR from DTW protocol non-compliance; pooling target regions. Table S12: Bias on Reference Logan DVR from DTW protocol non-compliance. Table S13: Bias on SUVR90 due to perfusion changes with constant R1; pooling target regions. Table S14: Bias on SUVR90 due to perfusion changes with constant R1. Table S15: Bias on SUVR90 due to perfusion changes with variable R1; pooling target regions. Table S16: Bias on SUVR90 due to perfusion changes with variable R1. Table S17: Bias on SUVR90 from scanning protocol non-compliance; pooling target regions. Table S18: Bias on SUVR90 from scanning protocol non-compliance.
- Published
- 2021
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- View/download PDF
9. Additional file 2 of A dual-time-window protocol to reduce acquisition time of dynamic tau PET imaging using [18F]MK-6240
- Author
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Kolinger, Guilherme D., Vállez García, David, Lohith, Talakad G., Hostetler, Eric D., Sur, Cyrille, Struyk, Arie, Boellaard, Ronald, and Koole, Michel
- Abstract
Additional file 2. Fig S2: Comparing Standardized Uptake Value Ratios (SUVR) using a 90 to 120 min acquisition time interval post tracer injection with Reference Logan (Ref Logan) and 2 Tissue Compartment Model (2TCM) Distribution Volume Ratios (DVR). Ratios were calculated relative to the cerebellar cortex.
- Published
- 2021
- Full Text
- View/download PDF
10. Amyloid burden quantification depends on PET and MR image processing methodology
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Kolinger, Guilherme D., primary, Vállez García, David, additional, Willemsen, Antoon T. M., additional, Reesink, Fransje E., additional, de Jong, Bauke M., additional, Dierckx, Rudi A. J. O., additional, De Deyn, Peter P., additional, and Boellaard, Ronald, additional
- Published
- 2021
- Full Text
- View/download PDF
11. Effects of tracer uptake time in non-small cell lung cancer 18F-FDG PET radiomics.
- Author
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Kolinger, Guilherme D., García, David Vállez, Kramer, Gerbrand Maria, Frings, Virginie, Zwezerijnen, Gerben J. C., Smit, Egbert F., de Langen, Adrianus Johannes, Buvat, Irène, and Boellaard, Ronald
- Published
- 2021
- Full Text
- View/download PDF
12. Repeatability of [18F]FDG PET/CT total metabolic active tumour volume and total tumour burden in NSCLC patients.
- Author
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Kolinger, Guilherme D., Vállez García, David, Kramer, Gerbrand M., Frings, Virginie, Smit, Egbert F., de Langen, Adrianus J., Dierckx, Rudi A. J. O., Hoekstra, Otto S., and Boellaard, Ronald
- Subjects
NON-small-cell lung carcinoma ,POSITRON emission tomography ,CANCER diagnosis ,IMAGE reconstruction ,CANCER treatment ,NUCLEAR medicine - Abstract
Background: Total metabolic active tumour volume (TMATV) and total tumour burden (TTB) are increasingly studied as prognostic and predictive factors in non-small cell lung cancer (NSCLC) patients. In this study, we investigated the repeatability of TMATV and TTB as function of uptake interval, positron emission tomography/computed tomography (PET/CT) image reconstruction settings, and lesion delineation method. We used six lesion delineation methods, four direct PET image-derived delineations and two based on a majority vote approach, i.e. intersection between two or more delineations (MV2) and between three or more delineations (MV3). To evaluate the accuracy of those methods, they were compared with a reference delineation obtained from the consensus of the segmentations performed by three experienced observers. Ten NSCLC patients underwent two baseline whole-body [
18 F]2-Fluoro-2-deoxy-2-D-glucose ([18 F]FDG) PET/CT studies on separate days, within 3 days. Two scans were obtained on each day at 60 and 90 min post-injection to assess the influence of tracer uptake interval. PET/CT images were reconstructed following the European Association of Nuclear Medicine Research Ltd. (EARL) compliant settings and with point-spread-function (PSF) modelling. Repeatability between the measurements of each day was determined and the influence of uptake interval, reconstruction settings, and lesion delineation method was assessed using the generalized estimating equations model.Results: Based on the Jaccard index with the reference delineation, the MV2 lesion delineation method was the most successful method for automated lesion segmentation. The best overall repeatability (lowest repeatability coefficient, RC) was found for TTB from 90 min of tracer uptake scans reconstructed with EARL compliant settings and delineated with 41% of lesion's maximum SUV method (RC = 11%). In most cases, TMATV and TTB repeatability were not significantly affected by changes in tracer uptake time or reconstruction settings. However, some lesion delineation methods had significantly different repeatability when applied to the same images.Conclusions: This study suggests that under some circumstances TMATV and TTB repeatability are significantly affected by the lesion delineation method used. Performing the delineation with a majority vote approach improves reliability and does not hamper repeatability, regardless of acquisition and reconstruction settings. It is therefore concluded that by using a majority vote based tumour segmentation approach, TMATV and TTB in NSCLC patients can be measured with high reliability and precision. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
13. Effects of Tracer Uptake Time in Non-Small Cell Lung Cancer 18 F-FDG PET Radiomics.
- Author
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Kolinger GD, García DV, Kramer GM, Frings V, Zwezerijnen GJC, Smit EF, de Langen AJ, Buvat I, and Boellaard R
- Subjects
- Cross-Sectional Studies, Fluorodeoxyglucose F18, Humans, Image Processing, Computer-Assisted methods, Carcinoma, Non-Small-Cell Lung diagnostic imaging, Lung Neoplasms diagnostic imaging, Lung Neoplasms pathology
- Abstract
PET radiomics applied to oncology allow the measurement of intratumoral heterogeneity. This quantification can be affected by image protocols; hence, there is an increased interest in understanding how radiomic expression on PET images is affected by different imaging conditions. To address that interest, this study explored how radiomic features are affected by changes in
18 F-FDG uptake time, image reconstruction, lesion delineation, and radiomic binning settings. Methods: Ten non-small cell lung cancer patients underwent18 F-FDG PET on 2 consecutive days. On each day, scans were obtained at 60 and 90 min after injection and reconstructed following EARL version 1 and with point-spread-function resolution modeling (PSF-EARL2). Lesions were delineated with an SUV threshold of 4.0, with 40% of SUVmax , and with a contrast-based isocontour. PET image intensity was discretized with both a fixed bin width (FBW) and a fixed bin number before the calculation of the radiomic features. Repeatability of features was measured with the intraclass correlation coefficient, and the change in feature value over time was calculated as a function of its repeatability. Features were then classified into use-case scenarios based on their repeatability and susceptibility to tracer uptake time. Results: With PSF-EARL2 reconstruction, 40% of SUVmax lesion delineation, and FBW intensity discretization, most features (94%) were repeatable at both uptake times (intraclass correlation coefficient > 0.9), 35% being classified for dual-time-point use cases as being sensitive to changes in uptake time, 39% were classified for cross-sectional studies with an unclear dependency on time, 20% were classified for cross-sectional use while being robust to uptake time changes, and 6% were discarded for poor repeatability. EARL version 1 images had 1 fewer repeatable feature (neighborhood gray-level different matrix coarseness) than PSF-EARL2; the contrast-based delineation had the poorest repeatability of the delineation methods, with 45% of features being discarded; and fixed bin number resulted in lower repeatability than FBW (45% and 6% of features were discarded, respectively). Conclusion: Repeatability was maximized with PSF-EARL2 reconstruction, lesion delineation at 40% of SUVmax , and FBW intensity discretization. On the basis of their susceptibility to uptake time, radiomic features were classified into specific non-small cell lung cancer PET radiomics use cases., (© 2022 by the Society of Nuclear Medicine and Molecular Imaging.)- Published
- 2022
- Full Text
- View/download PDF
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