1,906 results on '"Korsak A"'
Search Results
2. Multiscale molecular modeling of chromatin with MultiMM: From nucleosomes to the whole genome
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Sevastianos Korsak, Krzysztof Banecki, and Dariusz Plewczynski
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Biotechnology ,TP248.13-248.65 - Abstract
Motivation: We present a user-friendly 3D chromatin simulation model for the human genome based on OpenMM, addressing the challenges posed by existing models with use-specific implementations. Our approach employs a multi-scale energy minimization strategy, capturing chromatin's hierarchical structure. Initiating with a Hilbert curve-based structure, users can input files specifying nucleosome positioning, loops, compartments, or subcompartments.Results: The model utilizes an energy minimization approach with a large choice of numerical integrators, providing the entire genome's structure within minutes. Output files include the generated structures for each chromosome, offering a versatile and accessible tool for chromatin simulation in bioinformatics studies. Furthermore, MultiMM is capable of producing nucleosome-resolution structures by making simplistic geometric assumptions about the structure and the density of nucleosomes on the DNA.Code availability: Open-source software and the manual are freely available on https://github.com/SFGLab/MultiMM or via pip https://pypi.org/project/MultiMM/.
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- 2024
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3. Water consumption, yield and quality of onions depending on humic fertilizer application under drip irrigation in Saratov Trans-Volga region
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Nina A. Pronko, Konstantin V. Korsakov, Victor V. Pronko, and Viktor V. Korsak
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onions ,drip irrigation ,humic fertilizers ,water consumption ,water consumption coefficient ,irrigation water use coefficient ,yield ,Hydraulic engineering ,TC1-978 - Abstract
Purpose: to study the features of humic fertilizer impact on water consumption, yield and quality of onions under drip irrigation in the dry-steppe zone of Saratov Trans-Volga region. Materials and methods. Field studies were carried out on dark chestnut soils in 2019–2022. The objects of the study were the zoned Chalcedony variety and fertilizers based on humic acids. Related observations and studies of water consumption, productivity formation and yield quality were carried out using generally accepted methods. Results. Research has shown that when maintaining a drip irrigation regime, which involves watering when soil moisture is reduced to 80 % of the lowest moisture capacity in the 0–30 cm layer, the total water consumption of onions on average over the years of the study amounted to 4102 cub. m/ha, average daily – 31 cub. m/ha. The humic fertilizer application contributed to a more economical use of moisture and irrigation water, as evidenced by a decrease in the water consumption coefficient by 7.1–23.3 %, and the cost of irrigation water to form a unit of marketable output by 15.9–24.0 %. Humic fertilizers also provided a significant yield increase – 4.9–15.31 t/ha (10–31 % higher than the control – without fertilizers). Conclusions: the humic fertilizer application, which have stimulating and adaptogenic features, when growing onions under the arid conditions of the Saratov Trans-Volga region with drip irrigation, is an effective technique that ensures more economical use of water resources and increases the yield of one of the leading vegetable crops – onions.
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- 2024
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4. THE ROLE OF STATE SUPPORT IN THE DEVELOPMENT OF THE HOTEL AND RESTAURANT BUSINESS IN THE CONTEXT OF CRISIS PHENOMENA AND EUROINTEGRATION PROCESSES
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Tetiana Hushtan and Roman Korsak
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efficiency ,economy ,crisis ,covid-19 pandemic ,hospitality ,hotel and restaurant business ,european integration processes ,legislation ,potential ,Economic growth, development, planning ,HD72-88 - Abstract
The article presents the results of a study of the state of the hotel and restaurant business in Ukraine in general and the Transcarpathian region in particular in the context of crisis phenomena. The authors analyse the peculiarities of functioning of hospitality enterprises in the context of military operations on the territory of Ukraine. The research provides an analytical review of the legislative framework and social factors that have influenced the activities of hospitality enterprises in conditions of instability. It also identifies the problems and prospects for the development of the hotel and restaurant business in the context of overcoming the consequences of military operations, European integration processes and legislative changes, and outlines promising ways of future recovery of the hospitality sector as a component of tourism. The purpose of the article is to conduct an analytical study of the state of the hotel and restaurant business in the post-covid period and the active phase of the military conflict, and also the impact of state regulation on overcoming such destructive factors against the background of Ukraine's European integration processes. Methodology. The study was conducted on the basis of an analysis of statistical indicators of the performance of temporary accommodation (accommodation) and catering enterprises, based on analytical and statistical materials of official statistics of the Zakarpattia Oblast for the period from 2020 to 2024, provided by the Main Department of Statistics in the Zakarpattia Oblast. The legal framework and regulatory documents related to the identified issues were analysed. The paper analyses the state and needs of SMEs in Ukraine as assessed by local hromadas, as well as an analytical study based on a survey of owners of hotel and restaurant businesses in Zakarpattia Oblast through personal interviews. The monitoring study covered 50 enterprises of different sizes and different forms of ownership. Results. The publication analyses the factors that stimulate the activity of enterprises in the accommodation sector, describes the destructive factors that suppress or complicate the activity of enterprises in this sphere of economic activity, and considers the state policy aimed at supporting the hotel and restaurant business and the tourism sector in general. The authors identify the commonality of problematic issues for the hromadas of Ukraine on the way to the future post-war reconstruction of the hospitality and tourism sector, as well as the functioning of this sector today. The research lists the opportunities for business on the way to European integration and the challenges associated with it. As a result, the authors suggested ways to accelerate and facilitate the integration of the local hotel and restaurant business, improve the legislative framework at the state and local levels for the development of the hotel and restaurant sector and its de-shadowing, and also emphasised the importance of close cooperation of SMEs with state and local authorities in terms of support, development promotion, investment prospects and implementation of European legislation in the activities of such enterprises.
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- 2024
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5. The morphological characteristic of regenerative neuroma of peripheral nerve in conditions of its injury and application of omega-3-polyunsaturated fatty acids.
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Korsak A.V., Chaikovsky Yu.B., Grabovyj O.M., and Skibinska T.R.
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peripheral nerve ,regenerations ,omega-3-polyunsaturated fatty acids ,Biology (General) ,QH301-705.5 - Abstract
Experiment was carried out on white rats, which were divided into 3 groups. Experimental trauma of the sciatic nerve was carried out in 1 end 2 groups. Standart trauma of the sciatic nerve was carried out in 3 groups. Drug correction was not applied in the first group. Omega-3-polyunsaturated fatty acids were applied during 3 weeks in a doze 0,04 g /kg a day in the second group of animals. Drug correction applied in the second group. Morphological characteristic of regenerative neuroma of sciatic nerve in 6 weeks after the injury in 1,2,3 groups of animals was studied. The results obtained testify, that in the group of rats with pharmacological correction by omega-3-polyunsaturated fatty acids process of regeneration was activated.
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- 2007
6. The applicability of the SERS technique in food contamination testing – The detailed spectroscopic, chemometric, genetic, and comparative analysis of food-borne Cronobacter spp. strains
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Niciński, K., Witkowska, E., Korsak, D., Szuplewska, M., and Kamińska, A.
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- 2025
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7. Multidisciplinary approach to the treatment of traumatic brain injury in children and rehabilitation
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S.M. Yaroslavska, A.V. Korsak, and L.V. Litvynova
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polytrauma ,children ,traumatic brain injury ,multidisciplinary approach ,psychological state ,anesthetic support. ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Оbjective ‒ to show the need for a comprehensive approach to the treatment and rehabilitation of patients with traumatic brain injury (TBI); the specifics of psychosomatic and psychophysiological complications in children as a result of trauma. Materials and methods. In period from 2019 to 2024 in the National Children's Specialized Hospital Okhmatdyt was applied a multidisciplinary approach in the treatment of TBI in 112 patients (children from 9 months to 16 years, the main group). In 22 (19.7 %) cases had isolated TBI and in 90 (80.3 %) had polytrauma. The peculiarity of treating children in the period 2022‒2024 is the presence of injuries as a result of hostilities. The mental state was assessed at the time of discharge and 3 months later using the State-Trait Anxiety Inventory (STAI) and the Kerdo index, and the Ronde index was used also. The control group was formed from 115 children who were treated until 2019, comparable in terms of age, type of injuries, length of stay in the hospital with patients of the main group. Results. The main complications in the psychoemotional, cognitive, psychosomatic, psychophysiological spheres are presented. The main general approaches in the treatment of brain injury and its consequences regarding the basic communicative work of a multidisciplinary team are shown: anesthesiologist, neurosurgeon, trauma surgeon, general surgeon, psychologist, neurologist, radiologist, doctor of functional diagnostics, rehabilitator. The features of anesthesiologist's work during sedation and anesthesia are described. A comparative assessment of the patient’s condition at discharge under 2019 (without of the principle of a multidisciplinary approach using) and in children who were treated with this method was performed. The dynamics of the various complications types presence in patients before 2019 and after was showed (with or without the multidisciplinary approach in treatment). Conclusions. A multidisciplinary approach to the treatment of both isolated TBI and polytrauma ensures timely diagnosis of psychological, psychosomatic, and psychophysiological disorders, and allows the involvement of appropriate specialists who carry out correction and rehabilitation. All this improves the quality of treatment and reduces the frequency of complications. Specialists who provide assistance to children with trauma should know the age-based foundations of child psychology in order to timely involve a psychologist in diagnosis and treatment at the stages of traumatic injury. Communication in the work between specialists makes it possible to pay attention to the peculiarities of the traumatic process, the complications that arise and to carry out correction and necessary rehabilitation in a timely manner. The most pronounced psychological and psychophysical complications in the main group were among children who suffered as a result of military actions and cruel treatment. Three months after receiving the injury, asthenic syndrome remained in 29.5 % of patients of the main group, 24.5 % of patients of the control group. In the control group, there is a decrease in these symptoms, but to a lesser extent, it can be interpreted so that the psychologist's recommendations were not taken into account by the neurosurgeon (surgeon) and the psychologist was not always involved in the treatment process, or some recommendations were not followed by the parents at the outpatient stage after discharge.
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- 2024
8. The COVID-19 crisis as a vector for changes in healthcare
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K. S. Korsak, E. V. Voropaev, A. A. Kovalev, T. M. Sharshakova, and I. O. Stoma
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pandemic ,covid-19 ,vaccination ,attitude to vaccination ,doctors of the republic of belarus ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objective. To assess the possible impact of the COVID-19 pandemic on the attitudes of Belarusian doctors toward vaccination.Materials and methods. A questionnaire survey has been conducted using the Google Forms service for doctors of different specialties in the Republic of Belarus.Results. A total of 1815 doctors from 7 regions of the Republic of Belarus participated in the survey. A considerable part of the respondents (79,89%, or 1450 people) have a positive attitude to vaccination, 16,42% (298 people) – neutral, a part of the respondents (3,69%, or 67 people) have a negative attitude towards vaccination. The highest percentage of positive evaluations of the attitude towards vaccination was revealed among infectious disease doctors, pediatricians and doctors of prophylactic specialization. For a significant proportion of respondents (62.7%, or 1,138 people), the pandemic raised an interest in vaccination issues. The attitudes toward vaccination by the majority of surveyed physicians either remained unchanged (49.2%, or 893 people) or changed for the better (47.22%, or 857 people). The vast majority of respondents are vaccinated against COVID-19 and influenza. Willingness to be vaccinated against influenza was most noted among infectious disease specialists and prophylactic physicians.Conclusion. The COVID-19 pandemic changed more than just practical medicine and science, it also transformed the information field, initiated educational reforms, and demonstrated the importance of human values. The COVID-19 pandemic influenced the physicians’ growing interest in vaccination.
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- 2024
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9. Characterization of the Bacillus cereus Group Isolated from Ready-to-Eat Foods in Poland by Whole-Genome Sequencing
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Joanna Kowalska, Elżbieta Maćkiw, Dorota Korsak, and Jacek Postupolski
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confectionery ,RTE ,WGS ,toxin profiles ,antimicrobial resistance ,Chemical technology ,TP1-1185 - Abstract
Bacillus cereus sensu lato can contaminate food and cause food poisoning by producing toxins such as cereulide, toxin BL, and cytotoxin K. In this study, we retrospectively analyzed B. cereus sensu lato from retail food products and food poisoning cases using PCR methods to determine their virulence profiles. A new toxin profile, encoding all four toxins (hbl, nhe, cytK, ces), was found in 0.4% of isolates. The toxin profiles, classified into A-J, revealed that 91.8% harbored nhe genes, while hbl, cytK, and ces were detected in 43.8%, 46.9%, and 4.2% of isolates, respectively. Whole-genome sequencing (WGS) identified four distinct species within the B. cereus group, with 21 isolates closely related to B. cereus sensu stricte, 25 to B. mosaicus, 2 to B. toyonensis, and 1 to B. mycoides. Three novel sequence types (STs 3297, 3298, 3299) were discovered. Antibiotic resistance genes were common, with 100% of isolates carrying beta-lactam resistance genes. Fosfomycin (80%), vancomycin (8%), streptothricin (6%), tetracycline (4%), and macrolide resistance (2%) genes were also detected. These results highlight the genetic diversity and antibiotic resistance potential of B. cereus sensu lato strains in Polish food products.
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- 2024
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10. Fungal Biostarter and Bacterial Occurrence of Dry-Aged Beef: The Sensory Quality and Volatile Aroma Compounds after 21 Days of Aging
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Wiesław Przybylski, Danuta Jaworska, Paweł Kresa, Grzegorz Ostrowski, Magdalena Płecha, Dorota Korsak, Dorota Derewiaka, Lech Adamczak, Urszula Siekierko, and Julia Pawłowska
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dry-aged beef (DAB) ,Mucor flavus ,sensory quality ,volatile compounds ,microbiological quality ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
In this study, we decided to test the hypothesis that the fungal biostarter M. flavus used during a 21-day beef dry-aging process significantly impacts the composition of other microorganisms, the profile of volatile compounds, meat hardness characteristics, and, consequently, the sensory quality. The experiments were performed on samples derived from animals crossbred between Holstein–Fresian cows and meat breed bulls. Two groups of samples were studied, including the control group, without biostarter, and a group inoculated with the M. flavus biostarter. Both sample groups were seasoned for 21 days in the dry-aging fridge. The physicochemical parameters (pH, color parameters), the chemical composition of muscle, the determination of the shear force, the profile of volatile compounds (VOCs), and the sensory quality were evaluated after aging. During this study, classical microbiological methods were used to investigate the influence of fungal biostarters on the growth and survival of bacteria and other fungi (e.g., yeasts) during the dry-aging process of beef (DAB). The M. flavus biostarter improved the sensory quality of DAB, allowing high sensory quality to be achieved after just 21 days. This is likely due to the diverse VOCs produced by the fungus, including 1-tetradecanol, 2-nonenal, trans-2-undecenoic acid, and the following esters: formic acid hexyl ester, 10-undecenoic acid methyl ester, and 4-methylpentanoic acid methyl ester. The presence of the biostarter had no significant effect on the number of the bacteria or the survivability of the L. monocytogenes on the meat’s surface in laboratory conditions.
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- 2024
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11. The Impact of an Extended Bleed-to-evisceration Interval on the Microbiological Quality of On-farm Slaughtered Cattle Carcasses
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Maldague, A., Daube, G., Martinelle, L., Lagamme, C., Crèvecoeur, S., Vandenheede, M., and Korsak, N.
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- 2024
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12. Advancements and future directions in single-cell Hi-C based 3D chromatin modeling
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Banecki, Krzysztof, Korsak, Sevastianos, and Plewczynski, Dariusz
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- 2024
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13. Multiscale molecular modeling of chromatin with MultiMM: From nucleosomes to the whole genome
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Korsak, Sevastianos, Banecki, Krzysztof, and Plewczynski, Dariusz
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- 2024
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14. Prevalence, antibiotic resistance, and virulence gene profile of Escherichia coli strains shared between food and other sources in Africa: A systematic review
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Eustache C. Hounkpe, Philippe Sessou, Souaïbou Farougou, Georges Daube, Véronique Delcenserie, Paulin Azokpota, and Nicolas Korsak
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africa ,antibiotic resistance ,escherichia coli virulence genes ,food ,systematic review ,Animal culture ,SF1-1100 ,Veterinary medicine ,SF600-1100 - Abstract
Background and Aim: Foodborne diseases caused by Escherichia coli are prevalent globally. Treatment is challenging due to antibiotic resistance in bacteria, except for foodborne infections due to Shiga toxin-producing E. coli, for which treatment is symptomatic. Several studies have been conducted in Africa on antibiotic resistance of E. coli isolated from several sources. The prevalence and distribution of resistant pathogenic E. coli isolated from food, human, and animal sources and environmental samples and their virulence gene profiles were systematically reviewed. Materials and Methods: Bibliographic searches were performed using four databases. Research articles published between 2000 and 2022 on antibiotic susceptibility and virulence gene profile of E. coli isolated from food and other sources were selected. Results: In total, 64 articles were selected from 14 African countries: 45% of the studies were conducted on food, 34% on animal samples, 21% on human disease surveillance, and 13% on environmental samples. According to these studies, E. coli is resistant to ~50 antimicrobial agents, multidrug-resistant, and can transmit at least 37 types of virulence genes. Polymerase chain reaction was used to characterize E. coli and determine virulence genes. Conclusion: A significant variation in epidemiological data was noticed within countries, authors, and sources (settings). These results can be used as an updated database for monitoring E. coli resistance in Africa. More studies using state-of-the-art equipment are needed to determine all resistance and virulence genes in pathogenic E. coli isolated in Africa.
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- 2023
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15. Thermal resistance of selected strains of Salmonella spp. isolated from eggs and sesame seeds
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Maćkiw, Elżbieta, Kowalska, Joanna, Korsak, Dorota, Stasiak, Monika, Antoszewska, Aleksandra, Ławrynowicz-Paciorek, Maja, and Postupolski, Jacek
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- 2024
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16. LoopSage: An energy-based Monte Carlo approach for the loop extrusion modeling of chromatin
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Korsak, Sevastianos and Plewczynski, Dariusz
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- 2024
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17. Multi-scale phase separation by explosive percolation with single-chromatin loop resolution
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Sengupta, Kaustav, Denkiewicz, Michał, Chiliński, Mateusz, Szczepińska, Teresa, Mollah, Ayatullah Faruk, Korsak, Sevastianos, D'Souza, Raissa, Ruan, Yijun, and Plewczynski, Dariusz
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Biochemistry and Cell Biology ,Biological Sciences ,Human Genome ,Bioengineering ,Genetics ,1.1 Normal biological development and functioning ,Underpinning research ,3D genomics ,Chromatin folding ,Compartmentalisation ,Loop extrusion ,Networks ,Percolation ,Phase separation ,Scalar parameter ,Numerical and Computational Mathematics ,Computation Theory and Mathematics ,Biochemistry and cell biology ,Applied computing - Abstract
The 2 m-long human DNA is tightly intertwined into the cell nucleus of the size of 10 μm. The DNA packing is explained by folding of chromatin fiber. This folding leads to the formation of such hierarchical structures as: chromosomal territories, compartments; densely-packed genomic regions known as Topologically Associating Domains (TADs), or Chromatin Contact Domains (CCDs), and loops. We propose models of dynamical human genome folding into hierarchical components in human lymphoblastoid, stem cell, and fibroblast cell lines. Our models are based on explosive percolation theory. The chromosomes are modeled as graphs where CTCF chromatin loops are represented as edges. The folding trajectory is simulated by gradually introducing loops to the graph following various edge addition strategies that are based on topological network properties, chromatin loop frequencies, compartmentalization, or epigenomic features. Finally, we propose the genome folding model - a biophysical pseudo-time process guided by a single scalar order parameter. The parameter is calculated by Linear Discriminant Analysis of chromatin features. We also include dynamics of loop formation by using Loop Extrusion Model (LEM) while adding them to the system. The chromatin phase separation, where fiber folds in 3D space into topological domains and compartments, is observed when the critical number of contacts is reached. We also observe that at least 80% of the loops are needed for chromatin fiber to condense in 3D space, and this is constant through various cell lines. Overall, our in-silico model integrates the high-throughput 3D genome interaction experimental data with the novel theoretical concept of phase separation, which allows us to model event-based time dynamics of chromatin loop formation and folding trajectories.
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- 2022
18. ccLoopER: Deep Prediction of CTCF and cohesin Mediated Chromatin looping Using DNA Transformer Model.
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Anup Kumar Halder, Abhishek Agarwal, Sevastianos Korsak, Karolina Jodkowska, and Dariusz Plewczynski
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- 2023
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19. Analysis of Skin Lesions for Cancer Detection Using Convolutional Neural Networks.
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Katarzyna Korsak, Marcin Hernes, Ewa Walaszczyk, Artur Rot, and Anna Grzeda
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- 2023
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20. ccLoopER: Deep Prediction of CTCF and cohesin Mediated Chromatin looping Using DNA Transformer Model
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Halder, Anup Kumar, Agarwal, Abhishek, Korsak, Sevastianos, Jodkowska, Karolina, Plewczynski, Dariusz, Goos, Gerhard, Founding Editor, Hartmanis, Juris, Founding Editor, Bertino, Elisa, Editorial Board Member, Gao, Wen, Editorial Board Member, Steffen, Bernhard, Editorial Board Member, Yung, Moti, Editorial Board Member, Maji, Pradipta, editor, Huang, Tingwen, editor, Pal, Nikhil R., editor, Chaudhury, Santanu, editor, and De, Rajat K., editor
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- 2023
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21. Turbidimetric flow analysis system for the investigation of microbial growth
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Czajkowska, Agnieszka, Korsak, Dorota, Fiedoruk-Pogrebniak, Marta, Koncki, Robert, and Strzelak, Kamil
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- 2024
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22. Analysis of the Energy Complex Member of the EАEU Countries and the Formation of Groups-Technologies of its Digitalization
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M. I. Rusetskaya, T. F. Mancerova, and E. P. Korsak
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installed capacity ,generation ,production structure ,consumption ,losses ,united electricity market ,united energy market ,digitalization ,technological cycle ,internet of things ,artificial intelligence ,distributed registry system ,virtual and augmented reality ,supporting functions and technologies ,Hydraulic engineering ,TC1-978 ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Due to the increasing internationalization of the member countries of the Eurasian Economic Union (EAEU), it is planned to create a common energy market and an electric energy market. To ensure the reliable functioning of the energy systems of individual states of the Union and their common energy market, it is necessary to increase energy efficiency and reduce costs at each stage of production, transmission, distribution and sale of electricity by optimizing processes in the industry through the introduction of digital technologies. The purpose of this work is to analyze the electric power complexes of the EAEU member states and to consider groups of digitalization technologies of industries in the context of the electric power industry, to form an algorithm for creating a classification of digitalization technologies of the electric power industry and on the basis of the latter to create the classification itself. The article provides an overview of the dynamics of the main economic indicators of the Union countries and the main indicators of their electric power industries, examines the structure of electricity production, energy portfolio, average electricity prices, total electricity consumption by sector. The import-export potential and the level of electricity losses in the networks have been analyzed. The interpretation of digital technologies of the electric power complex in the context of existing groups-digitalization technologies was made, the components of the interconnection of digital technologies were identified; the classification of the above components by production stages has been developed. Recommendations on the further use of the classification for the formation of an indicative system for assessing the level of digitalization of the electric power complex are put forward. It is concluded that digitalization of the electric power system on the technical side increases the energy security of the state and the competitiveness of the energy system on the world market, and on the economic side it helps to reduce costs at all stages of the entire technological cycle.
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- 2023
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23. Study of Humoral Immunity against Coronavirus Infection COVID-19 in Vaccinated Individuals with Vaccines Available in the Republic of Belarus (Sputnik V (Gam-COVID-Vac), RF and Sinopharm (BBIBP-CorV), PRC)
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K. S. Korsak, I. O. Stoma, E. V. Voropaev, O. V. Osipkina, and A. A. Kovalev
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vaccination ,immune response ,adverse reactions ,sputnik v (gam-covid-vac) ,sinopharm (bbibp-corv) ,covid-19 ,sars-cov-2 ,s-protein ,n-protein ,Epistemology. Theory of knowledge ,BD143-237 - Abstract
Relevance. Many countries around the world are developing effective vaccines against SARS-CoV-2. The measure of the effectiveness of the vaccination process has traditionally been antibody production. The frequency and intensity of adverse reactions is also an important factor in making a decision regarding a vaccine. This study presents the results of the evaluation of the formation of humoral immunity and the occurrence of reactions in response to the administration of Sputnik V (Gam-COVID-Vac), RF, and Sinopharm (BBIBP-CorV), PRC. Aim. Analyze immunogenicity and reactogenicity of COVID-19 vaccines used in the Republic of Belarus (Sputnik V and Sinopharm). Materials and methods. Evaluation of postvaccination immune response by enzyme immunoassay and differential enzyme immunoassay for class G immunoglobulins to S- and N-proteins SARS-CoV-2. Blood plasma of the study participants was used as biological material. Blood sampling was performed 3 times: immediately before the first vaccine dose, on day 42, and 6 months after the first vaccine dose. To evaluate the frequency and intensity of postvaccination reactions, study participants were questioned. Results. At 42 days after administration of both vaccines, antibody levels are rising, with a significantly higher quantitative IgG count for the Sputnik V vaccine. This trend is also observed 6 months after the first dose of both vaccines, both among those previously infected with SARS-CoV-2 and those without a history of COVID-19. The comparison of Sputnik V and Sinopharm vaccine groups in terms of IgG (BAU/ml) levels to S- and N-proteins revealed a statistically significant difference in IgG levels to S-protein: the Sputnik V vaccine group had significantly higher IgG levels to S-protein than the Sinopharm vaccine group (p = 0.0000196). The incidence of adverse reactions in this study was 45%. All reactions noted were mild to moderate in severity. The most common were soreness and redness at the injection site, elevated body temperature, and a combination of several reactions. The increased body temperature after vaccination was more common among those vaccinated with the Sputnik V vaccine. Conclusion. Compared to Sinopharm, Sputnik V vaccine produces higher antibody level. Adverse reactions were observed in both vaccinated groups. However, significant statistical differences were found with regard to fever in the Sputnik V vaccine group, which occurred more frequently.
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- 2023
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24. Application of Cad Systems to Accounting for Mechanical Stresses in the Development of Uncooled Thermal Detectors of the Bolometric Type
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Tran Van Trieu, I. Yu. Lovshenko, V. R. Stempitsky, K. V. Korsak, Tran Tuan Trung, Dao Dinh Ha, and V. V. Kolos
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integral uncooled thermal detector ,microbolometer ,modeling ,mechanical stresses ,deformation ,Information technology ,T58.5-58.64 - Abstract
A comparative analysis of the characteristics of the main types of bolometers is indicated in the article. The constructive solution of an uncooled thermal detector of the bolometric type, formed using the technology of microelectromechanical systems, is studied. By means of computer simulation in modern computer-aided design systems in microelectronics, a static mechanical analysis was performed to assess the effect of mechanical stresses arising in structural materials during their formation on the magnitude of deformation. It has been established that to ensure the normal functioning of the microbolometer (to reduce the maximum deviation value of the film from the nominal value), it is necessary to reduce the internal mechanical stresses in the NiCr film. For the Si3N4 films, on the contrary, this value should be increased.
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- 2023
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25. Часткова перев’язка ворітної вени печінки: морфологічна оцінка результатів моделювання допечінкової форми портальної гіпертензії
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O.S. Godik, A.F. Levytskii, D.S. Diehtiarova, I.M. Benzar, A.V. Korsak, and V.V. Likhodiievskyi
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портальна гіпертензія ,печінка ,гепатоцити ,мікроскопія ,просвічувальна електронна мікроскопія ,Pediatrics ,RJ1-570 ,Surgery ,RD1-811 - Abstract
Портальна гіпертензія - це підвищення тиску в системі ворітної вени печінки. Найпоширенішою моделлю допечінкової портальної гіпертензії на тваринах, що використовується зараз, є часткова перев’язка ворітної вени печінки в щурів, але наявні дослідження фокусуються на визначенні короткотермінових наслідків часткової перев’язки ворітної вени печінки. Мета - оцінити модель допечінкової портальної гіпертензії шляхом гістологічного дослідження впливу часткової перев’язки ворітної вени на стан печінки. Матеріали та методи. До дослідження залучено щурів-самців лінії Вістар (n=45), віком 6 тижнів і масою тіла 150±15 г. Тварин поділено на три групи: І група - проведено часткову перев’язку ворітної вени печінки (формування стенозу; n=15), II - виконано перев’язку ворітної вени печінки без її обструкції (псевдооперовані; n=15), ІІI - контрольна група (інтактні тварини; n=15). За 6 місяців після операції щурів виведено з експерименту. Для гістологічного дослідження взято фрагменти печінки, після стандартної підготовки препаратів сфотографовано на світловому мікроскопі «OLYMPUS BX51» та досліджено на електронному мікроскопі «ПЕМ-125к». Отримані мікрофотографії оброблено, проаналізовано за допомогою програми обробки біомедичних зображень «ImageJ v.1.50» (National Institutes of Health, США). Цифрові дані проаналізовано в статистичному пакеті «Graphpad Prizm v. 8.3» (Graphpad, США). Результати. У щурів І групи спостерігалася крупнокраплинна і тотальна жирова дистрофія гепатоцитів у центрі часточок. Відмічався розвиток сполучної тканини із формуванням центро-центральних і порто-центральних септ. Пролонгований у часі ефект часткової перев’язки ворітної вени найбільше відповідав картині зональної жирової паренхіматозної дистрофії печінки та балонної дегенерації гепатоцитів із подальшим фіброзом. У тварин І групи розподіл питомої кількості ядер гепатоцитів відрізнявся від нормального (p=0,0124), виявлено відмінність цього показника між тваринами трьох груп (p
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- 2023
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26. Surgical Prevention of Thromboembolic Complications in Transfascial Thrombosis
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Yaroslav M. Popovich, Vyacheslav V. Korsak, Patricia O. Boldizhar, and Orest P. Laver
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acute varicothrombophlebitis ,pulmonary embolism ,thrombectomy ,crossectomy ,striping ,Surgery ,RD1-811 - Abstract
The aim. To evaluate the effectiveness of surgical methods of prevention of venous thromboembolic complications in transfascial thrombosis of the lower extremities. Materials and methods. The paper analyzes the results of examination and surgical or conservative treatment of 417 patients with transfascial thrombosis treated at the Vascular Surgery Department of the Zakarpattia Regional Clinical Hospital named after A. Novak from 1995 to March 2020 and at the Surgical Department of the Central City Clinical Hospital of Uzhhorod from September 2020 to September 2022. The main (I) group consisted of 349 (83.7%) patients who were operated for transfascial thrombosis. The control (II) group consisted of 68 (16.3%) patients with transfascial thrombosis who received conservative treatment. Results. In case of acute varicothrombophlebitis complicated by transfascial thrombosis, the scope of surgery should be expanded in order to surgically prevent thromboembolism of the pulmonary artery. All the patients with transfascial thrombosis were treated as for deep vein thrombosis. The approach to the removal of the small saphenous vein should be differentiated depending on the extent of thrombotic occlusion and the confluence of the sural veins. Surgical treatment of patients with transfascial thrombosis made it possible to prevent recurrence of the thrombotic process in the superficial and deep veins of the lower extremities, thromboembolism of the pulmonary artery, while with conservative treatment their frequency was 5.1%, 3.4% and 3.4%, respectively. Active surgical tactics in patients of the I group made it possible to reduce the frequency of manifestations of decompensated chronic venous insufficiency from 27.1% to 7.0%, and manifestations of postthrombotic syndrome in the deep veins of the lower extremities from 100% to 3.7%. Conclusions. Implementation of operative treatment of acute varicothrombophlebitis complicated by transfascial thrombosis allows to effectively prevent venous thromboembolic complications, eliminate manifestations of chronic venous insufficiency and prevent the development of post-thrombotic changes in superficial and deep veins.
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- 2023
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27. Comparative immunogenicity and safety of Gam-COVID-Vac and Sinopharm BBIBP-CorV vaccines: results of a pilot clinical study
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Stoma, Igor, Korsak, Katsiaryna, Voropaev, Evgenii, Osipkina, Olga, and Kovalev, Aleksey
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- 2023
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28. Comparative immunogenicity and safety of Gam-COVID-Vac and Sinopharm BBIBP-CorV vaccines: results of a pilot clinical study
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Igor Stoma, Katsiaryna Korsak, Evgenii Voropaev, Olga Osipkina, and Aleksey Kovalev
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SARS-CoV-2 infection ,Vaccines ,Humoral immune response ,Enzyme-linked immunosorbent assay (ELISA) ,BAU/ml ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Introduction: There are few comparative studies on efficiency of broad range COVID19 vaccination strategy. This pilot aims to describe the effect of mixed COVID19 vaccination on vaccination adoption and subsequent total immunity, Conducted in Republic of Belarus, this pilot clinical study shows varying immunogenic responses to Sputnik V (Gam-COVID-Vac), Russian Federation (RF) and Sinopharm (BBIBP-CorV), People's Republic of China (PRC) vaccines. Objective: To compare the immunogenicity and reactogenicity of Sputnik V (Gam-COVID-Vac) and Sinopharm (BBIBP-CorV) vaccines in vaccinated individuals.Materials and MethodsA total of 60 adults participated in the present study. The immune response after vaccination was assessed using enzyme immunoassay. IgG levels were measured in all participants at three time points: before vaccination, on the 42nd day after the first vaccine dose, and in 6 months after the first vaccine dose. Age, sex of participants, vaccine type, history of COVID-19/IgG seropositivity were included in the multivariate analysis. The results of the SARS-CoV-2 infection antibody test were quantified according to the WHO First International Standard (NIBSC code:20/136) and measured in international units (BAU/ml). Results: The study participants (n = 60) were divided into two groups where 50 % (n = 30) were vaccinated with Sputnik V (Gam-COVID-Vac), and 50 % (n = 30) were vaccinated with Sinopharm (BBIBP-CorV). Women represented 63 % and 77 % of Sputnik V and Sinopharm groups, respectively. The IgG levels on day 42 after the first vaccine dose were: Sputnik V (Gam-COVID-Vac): Me = 650.4 (642.2–669.4); Sinopharm (BBIBP-CorV: Me = 376.5 (290.9–526.4) (UMann–Whitney = 164, p = 0.000024). The IgG levels in 6 months after the first vaccine dose were: Sputnik V (Gam-COVID-Vac)Me = 608.7 (574.6–647.1); Sinopharm (BBIBP-CorV) Me = 106.3 (78.21–332.4); (UMann–Whitney = 172.5, p-value = 0.000042)). In a multivariate model Sputnik V vaccine type and IgG seropositivity at the baseline were significantly associated with higher levels of IgG both at 42 days and 6 months post-vaccination. Reactions after vaccination appeared in 27 vaccinated people (45 %). Conclusion: This pilot study demonstrated that Sputnik V (Gam-COVID-Vac) vaccine was more immunogenic than Sinopharm (BBIBP-CorV) vaccine. IgG levels in vaccinated individuals who previously recovered from SARS-CoV-2 infection (hybrid immunity) were higher than in SARS-CoV-2 infection immune-naive people. Reactions after vaccines administration were mild to moderate.
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- 2023
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29. Hygiene practices of food of animal origin operators in primary schools in the Mono Department of Benin. A cross-sectional study
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Hounkpe, Eustache C., Sessou, Philippe, Farougou, Souaïbou, Dotche, Ignace, Daube, Georges, Delcenserie, Véronique, Azokpota, Paulin, and Korsak, Nicolas
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- 2023
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30. Efficacy of COVID-19 vaccination in organized group: results of a prospective study
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I. O. Stoma, E. S. Korsak, E. V. Voropaev, O. V. Osipkina, A. A. Kovalev, O. L. Tumash, and D. D. Redko
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vaccination ,covid-19 ,sars-cov-2 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objective: to assess the efficacy of COVID-19 vaccination against in organized group. Materials and methods: A total of 122 adults, employees of a higher education institution participated in the study. Study participants were observed prospectively and filled out a questionnaire where they indicated their age, presence of chronic diseases, history of COVID-19 and vaccination status. Findings: the study participants were divided into two groups: 59 vaccinated (48.36 %) and 63 unvaccinated (51.64 %) individuals with no differences in age between the groups. There were significantly fewer confirmed cases of COVID-19 in the vaccinated group (р = 0,0008457, df = 1; χ2 = 11,138), significant differences (p = 0.0084; df = 4; χ2 =13.678) were observed in the number of cases among study participants based on their vaccination status. Conclusion: participants diagnosed with pneumonia were 75 % unvaccinated (p = 0,00729; df = 1; χ2 = 7,2). All hospitalized study participants were unvaccinated (p = 0,004678; χ2 =8,0). None of the vaccinated participants needed respiratory support (p = 0,0455; df = 1; χ2 = 4,0). Chronic disease in vaccinated subjects made a significant (p = 0,04563; df = 2; χ2 = 6,1743) impact on COVID-19 severity.
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- 2023
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31. Force majeure need for humanity to turn to nootechnology and nooecology
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K. V. Korsak and Y. K. Korsak
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crisis of humanity ,ecological threats ,total collapse ,means of rescue ,noowave ,nootechnologies ,noosciences ,nooglossary ,nooecology ,Environmental sciences ,GE1-350 - Abstract
We see the relevance of this article in the study of existing scientific papers on the prevention of global dangers. The population of Homo Sapiens Sapienses is growing quantitatively, increasing the rate of destruction of the natural environment and accelerating the movement to total collapse. Scientists around the world create only "appeals" and warnings of danger, even the UN decisions and the three environmental forums in 1992, 2002 and 2012 do not indicate real means of salvation. Purpose. A critical analysis of existing forecasts for the future and environmental projects and plans. The objectives of the study are to propose a real way to save humanity through the replacement of modern industrial and smart technologies with environmentally friendly production and social nooprocesses, development and use of noosciences, in particular, nooecology. The research methodology is based on the achievements of many classical and very young sciences, on the basis of which we build our proposal to create and use a large group of noosciences that form the author's nooglossary. The main ones are noointegral, systemic and noohistorical methods within the perspective principle of global evolutionism with transdisciplinary approaches. Results. Evidence that in the flow of nanotechnology since 2000 environmentally friendly, which we propose to call "wise" ̶ nootechnology began to appear. They are few and the number is growing very slowly. Such technologies are considered impossible and are not included in national or world plans and projects. We present a fragment of our "Nooglossary", which contains "terms from the future". Unfortunately, it did not attract the attention of humanity, like the emotional & populist eco-declarations of Greta Thunberg, a girl from Sweden. Conclusion. In the context of the COVID-19 pandemic, we hope to use the little-known project "Plan S" to inform humanity about the existence of saving nootechnologies and noosciences. There was a force majeure need to immediately create not only nooecology, but also all the necessary noosciences. We claim that the nooera has already begun, but humanity has not yet noticed it. The UN Plan "17 Goals for Sustainable Development" should be transformed into a global document for the implementation of the noosymbiosis of humanity and the biosphere, and finally, to build the noosphere.
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- 2022
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32. Sustainable Development of the Region: Environmental and Economic Aspects of Security
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Khodkovskaya, Julia V., Fazrakhmanov, Ilvir I., Barkova, Ekaterina E., Korsak, Katsiaryna P., Popkova, Elena G., editor, and Sergi, Bruno S., editor
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- 2022
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33. Changes in the Composition and Dynamics of Soil Humus and Physical Properties in Dark Chestnut Soils of Trans-Volga Dry Steppes After 75 and 35 years of Irrigation Agriculture
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Pronko, Nina A., Korsak, Viktor V., Romanova, Lubov G., Falkovich, Alexandr S., Mueller, Lothar, Series Editor, Saljnikov, Elmira, editor, Lavrishchev, Anton, editor, and Eulenstein, Frank, editor
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- 2022
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34. Analyzing the Problem of Mass Rejection of Vaccination against COVID-19. Possible Solutions
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K. S. Korsak, E. V. Voropaev, and I. O. Stoma
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vaccination ,prevention ,vaccination coverage ,vaccines acceptance ,covid-19 ,sars-cov-2 ,vaccination adherence ,conspiracy theories ,Epistemology. Theory of knowledge ,BD143-237 - Abstract
Relevance. The first case of COVID-19 was registered in 2019. Several months later, the local outbreak became pandemic. The only way to curb the spread of SARS-CoV-2 infection is mass vaccination that aims to form a herd immunity. The success of vaccination depends on people’s acceptance, which might be problematic. The review summarizes the main barriers to mass vaccination against COVID-19, categorizing people based on their willingness to vaccinate, and pointing out possible areas of work to overcome the barriers listed above. Aim. Analyze the problem of mass rejection of vaccination against COVID-19. Determine possible solutions. Conclusion. The main reason for refusal to vaccinate against COVID-19 is the lack of public awareness about the safety and efficacy of vaccines. This review lists possible approaches to creating a supportive information environment and ways to stimulate citizens to accelerate the rates of mass vaccination.
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- 2022
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35. ХРОНИЧЕСКИЙ РЕЦИДИВИРУЮЩИЙ ПОСТКОИТАЛЬНЫЙ ЦИСТИТ: СОВРЕМЕННЫЙ ВЗГЛЯД НА ПРОБЛЕМУ
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N. A. Silchuk, A. N. Nechiporenko, V. E. Korsak, and A. S. Kniaziuk
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инфекции мочевыводящих путей ,посткоитальный цистит ,профилактика ,лечение ,Medicine - Abstract
Инфекции нижних мочевых путей (ИНМП) – одна из наиболее частых бактериальных инфекций у женщин, составляют почти 25% всех инфекций. ИНМП встречаются чаще у женщин, чем у мужчин, в соотношении 8:1. Примерно 50-60% женщин сообщают по крайней мере об одном эпизоде ИНМП за всю свою жизнь, и к 24 годам каждая третья будет иметь симптомы ИНМП, требующие лечения антибиотиками. Наиболее частое воспалительное заболевание мочевого пузыря у женщин – цистит. В течение жизни острый цистит переносят 20-25% женщин, у каждой третьей из них в течение года возникает рецидив заболевания, у 10% оно переходит в хроническую рецидивирующую форму. Формой рецидивирующего цистита выступает посткоитальный цистит – цистит, развивающийся в течение 1-2 суток после полового акта у женщин с высоким открытием наружного отверстия уретры и его гипермобильностью, а также при наличии уретрогименальных спаек.
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- 2022
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36. Characteristic and Antimicrobial Resistance of Bacillus cereus Group Isolated from Food in Poland
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Joanna Kowalska, Elżbieta Maćkiw, Dorota Korsak, and Jacek Postupolski
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pastry ,food safety ,toxin ,retail food ,food control ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Bacillus cereus is a foodborne pathogen causing food safety issues due to the formation of difficult to eliminate spores and biofilms. The objective of this study was to investigate the occurrence of B. cereus (conducted as part of monitoring in 2017-2018) and the presence of a toxin gene in strains isolated from retail products (pastries/cakes; vegetables, spices, delicatessen products) in Poland, and to determine the susceptibility of these microorganisms to different antimicrobial agents. A total of 267 B. cereus isolates from food products were examined, of which 95.51% were found positive for the presence of at least one toxin gene, with the highest frequency of the nhe gene (91.39%). The hbl and cytK genes were detected in 53.56% and 44.19% of B. cereus strains, respectively. The lowest frequency was found for the ces gene (2.62%). The susceptibility of B. cereus isolates to 16 antimicrobials was investigated. Ampicillin and penicillin resistance was the most common resistance phenotype and was identified in 100% of the B. cereus isolates. In addition, the tested isolates exhibited resistance to: amoxicillin-clavulanic acid (96.25%), cephalothin (67.79%), ceftriaxone (64.42%), rifampicin (46.82%), trimethoprim-sulfamethoxazole (5.62%), quinupristin/dalfopristin (4.87%), chloramphenicol (3.75%), clindamycin (2.62%), teicoplanin (1.87%), erythromycin (1.87%), ciprofloxacin (0.75%), imipenem (0.75%), tetracycline (0.37%), and gentamicin (0.37%). The study results contribute to characterizing the diversity of B. cereus isolated from various food products in Poland and their impact on food safety and public health. This study delivers practical information on antibiotic resistance and the frequency of toxin genes among strains isolated from food.
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- 2022
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37. Hygiene practices of food of animal origin operators in primary schools in the Mono Department of Benin. A cross-sectional study
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Eustache C. Hounkpe, Philippe Sessou, Souaïbou Farougou, Ignace Dotche, Georges Daube, Véronique Delcenserie, Paulin Azokpota, and Nicolas Korsak
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Food of animal origin ,Good hygiene and production practices ,Survey ,Food safety ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Food of animal origin is an important source of proteins for human beings. However, they are subject to microbial contamination. It is essential to ensure the safety of food products intended for school children regarding their vulnerability to food poisoning. Good sanitary quality of these products requires the respect of good practices during their processing and distribution.This study aims to evaluate the conditions of processing and sale of food of animal origin to school children in public schools, with or without canteens, in the Department of Mono in southern Benin.In the Department of Mono in the Republic of Benin, 137 operators were interviewed in public schools, with one operator per school, using a questionnaire created on the Epicollect5 platform. The interview showed that the operators involved in the processing and sale of food to school children were women. Most of these operators had primary education and did not undergo a medical examination. They transported food of animal origin mixed with other types of food. Frying and cooking were used to prepare or process the food. Direct observation revealed that food is produced in an unhealthy environment. The operators did not wear gloves during food processing but some wore aprons. All the operators washed their hands with soap and water (tap or well water) after using the toilet. There was not an adequate handwashing facility. The majority of operators used wooden cutting boards. Overall, food operators especially in schools without a canteen do not follow good hygiene and manufacturing practices in the kitchen. To guarantee food safety for school children, training should be organized to make operators aware of good hygiene and manufacturing practices in kitchens.
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- 2023
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38. THE ROLE OF STATE SUPPORT IN THE DEVELOPMENT OF THE HOTEL AND RESTAURANT BUSINESS IN THE CONTEXT OF CRISIS PHENOMENA AND EUROINTEGRATION PROCESSES
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Hushtan, Tetiana, primary and Korsak, Roman, additional
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- 2024
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39. A Search for Possible Long Range Spin Dependent Interactions of the Neutron From Exotic Vector Boson Exchange
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Haddock, Christopher C., Amadio, Joseph, Anderson, Eamon, Barron-Palos, Libertad, Crawford, Bret, Esposito, Daniel, Fox, Walter, Francis, Ian, Fry, Jason, Gardiner, Hanna, Holley, Adam, Korsak, Kirill, Lieffers, Justin, Magers, Scott, Maldonado-Velazquez, Marissa, Mayorov, Dimitry, Nico, Jefferey, Okudaira, Takuya, Paudel, Churamani, Santra, Satyaranjan, Sarsour, Murad, Shimizu, Hirohiko M., Snow, William M., Sprow, Aaron, Steffen, Kyle, Swanson, Erik, Tovesson, Fredrik, Vanderwerp, John, and Yergeau, Peter
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Nuclear Experiment ,High Energy Physics - Experiment ,Physics - Instrumentation and Detectors - Abstract
We present a search for possible spin dependent interactions of the neutron with matter through exchange of spin 1 bosons with axial vector couplings as envisioned in possible extensions of the Standard Model. This was sought using a slow neutron polarimeter that passed transversely polarized slow neutrons by unpolarized slabs of material arranged so that this interaction would tilt the plane of polarization and develop a component along the neutron momentum. The result for the rotation angle, $\phi'_{V_5} = [2.8\pm\,4.6(stat.)\pm\,4.0(sys.)]\times 10^{-5}~\mbox{rad/m}$ is consistent with zero. This result improves the upper bounds on the neutron-matter coupling $g_{A}^{2}$ from such an interaction by about three orders of magnitude for force ranges in the mm-$\mu$m regime., Comment: 10 pages, 3 figures
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- 2018
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40. Time-dependent effect of desensitization with wasp venom on selected parameters of the immune system
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Szymański, Łukasz, Urbańska, Weronika, Ciepielak, Martyna, Cios, Aleksandra, Stankiewicz, Wanda, Stelmasiak, Marta, Rzeszotarska, Agnieszka, Korsak, Jolanta, Lewicki, Sławomir, and Chciałowski, Andrzej
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- 2022
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41. Making the Unspoken Visible Through Clean Language: Interviews With Families Facing Encephalopathy in Their Child
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Korsak, Tania, primary
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- 2022
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42. Characterization of the Bacillus cereus Group Isolated from Ready-to-Eat Foods in Poland by Whole-Genome Sequencing.
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Kowalska, Joanna, Maćkiw, Elżbieta, Korsak, Dorota, and Postupolski, Jacek
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WHOLE genome sequencing ,FOOD poisoning ,BACILLUS cereus ,GENETIC variation ,DRUG resistance in bacteria ,TETRACYCLINES ,TOXINS - Abstract
Bacillus cereus sensu lato can contaminate food and cause food poisoning by producing toxins such as cereulide, toxin BL, and cytotoxin K. In this study, we retrospectively analyzed B. cereus sensu lato from retail food products and food poisoning cases using PCR methods to determine their virulence profiles. A new toxin profile, encoding all four toxins (hbl, nhe, cytK, ces), was found in 0.4% of isolates. The toxin profiles, classified into A-J, revealed that 91.8% harbored nhe genes, while hbl, cytK, and ces were detected in 43.8%, 46.9%, and 4.2% of isolates, respectively. Whole-genome sequencing (WGS) identified four distinct species within the B. cereus group, with 21 isolates closely related to B. cereus sensu stricte, 25 to B. mosaicus, 2 to B. toyonensis, and 1 to B. mycoides. Three novel sequence types (STs 3297, 3298, 3299) were discovered. Antibiotic resistance genes were common, with 100% of isolates carrying beta-lactam resistance genes. Fosfomycin (80%), vancomycin (8%), streptothricin (6%), tetracycline (4%), and macrolide resistance (2%) genes were also detected. These results highlight the genetic diversity and antibiotic resistance potential of B. cereus sensu lato strains in Polish food products. [ABSTRACT FROM AUTHOR]
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- 2024
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43. Fungal Biostarter and Bacterial Occurrence of Dry-Aged Beef: The Sensory Quality and Volatile Aroma Compounds after 21 Days of Aging.
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Przybylski, Wiesław, Jaworska, Danuta, Kresa, Paweł, Ostrowski, Grzegorz, Płecha, Magdalena, Korsak, Dorota, Derewiaka, Dorota, Adamczak, Lech, Siekierko, Urszula, and Pawłowska, Julia
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BEEF quality ,METHYL formate ,CATTLE breeding ,SHEARING force ,FUNGAL growth - Abstract
In this study, we decided to test the hypothesis that the fungal biostarter M. flavus used during a 21-day beef dry-aging process significantly impacts the composition of other microorganisms, the profile of volatile compounds, meat hardness characteristics, and, consequently, the sensory quality. The experiments were performed on samples derived from animals crossbred between Holstein–Fresian cows and meat breed bulls. Two groups of samples were studied, including the control group, without biostarter, and a group inoculated with the M. flavus biostarter. Both sample groups were seasoned for 21 days in the dry-aging fridge. The physicochemical parameters (pH, color parameters), the chemical composition of muscle, the determination of the shear force, the profile of volatile compounds (VOCs), and the sensory quality were evaluated after aging. During this study, classical microbiological methods were used to investigate the influence of fungal biostarters on the growth and survival of bacteria and other fungi (e.g., yeasts) during the dry-aging process of beef (DAB). The M. flavus biostarter improved the sensory quality of DAB, allowing high sensory quality to be achieved after just 21 days. This is likely due to the diverse VOCs produced by the fungus, including 1-tetradecanol, 2-nonenal, trans-2-undecenoic acid, and the following esters: formic acid hexyl ester, 10-undecenoic acid methyl ester, and 4-methylpentanoic acid methyl ester. The presence of the biostarter had no significant effect on the number of the bacteria or the survivability of the L. monocytogenes on the meat's surface in laboratory conditions. [ABSTRACT FROM AUTHOR]
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- 2024
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44. Bioanalytical insight into the life of microbial populations: A chemical monitoring of ureolytic bacteria growth
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Bzura, Justyna, Korsak, Dorota, and Koncki, Robert
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- 2022
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45. Multi-scale phase separation by explosive percolation with single-chromatin loop resolution
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Kaustav Sengupta, Michał Denkiewicz, Mateusz Chiliński, Teresa Szczepińska, Ayatullah Faruk Mollah, Sevastianos Korsak, Raissa D'Souza, Yijun Ruan, and Dariusz Plewczynski
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3D genomics ,Percolation ,Phase separation ,Chromatin folding ,Networks ,Scalar parameter ,Biotechnology ,TP248.13-248.65 - Abstract
The 2 m-long human DNA is tightly intertwined into the cell nucleus of the size of 10 μm. The DNA packing is explained by folding of chromatin fiber. This folding leads to the formation of such hierarchical structures as: chromosomal territories, compartments; densely-packed genomic regions known as Topologically Associating Domains (TADs), or Chromatin Contact Domains (CCDs), and loops. We propose models of dynamical human genome folding into hierarchical components in human lymphoblastoid, stem cell, and fibroblast cell lines. Our models are based on explosive percolation theory. The chromosomes are modeled as graphs where CTCF chromatin loops are represented as edges. The folding trajectory is simulated by gradually introducing loops to the graph following various edge addition strategies that are based on topological network properties, chromatin loop frequencies, compartmentalization, or epigenomic features. Finally, we propose the genome folding model - a biophysical pseudo-time process guided by a single scalar order parameter. The parameter is calculated by Linear Discriminant Analysis of chromatin features. We also include dynamics of loop formation by using Loop Extrusion Model (LEM) while adding them to the system. The chromatin phase separation, where fiber folds in 3D space into topological domains and compartments, is observed when the critical number of contacts is reached. We also observe that at least 80% of the loops are needed for chromatin fiber to condense in 3D space, and this is constant through various cell lines. Overall, our in-silico model integrates the high-throughput 3D genome interaction experimental data with the novel theoretical concept of phase separation, which allows us to model event-based time dynamics of chromatin loop formation and folding trajectories.
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- 2022
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46. SG-APSIC1049: Immunogenicity of Gam-COVID-Vac and Sinopharm BBIBP-CorV vaccines in seropositive and seronegative adults
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Igor Stoma, Katsiaryna Korsak, Evgenii Voropaev, Olga Osipkina, and Aleksey Kovalev
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Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Objectives: Data comparing the immunogenicity of Sputnik-V and Sinopharm vaccines in seropositive and seronegative groups are lacking. We compared the immunogenicity of Sputnik-V (Gam-COVID-Vac) and Sinopharm (BBIBP-CorV) vaccines in seronegative and seropositive groups. Methods: In total, 60 adults participated the study. The immune response after vaccination was assessed using enzyme immunoassay. IgG levels were measured in all participants at 3 time points: before vaccination, 42 days after the first vaccine dose, and 6 months after the first vaccine dose. The results of the SARS-CoV-2 antibody test were quantified according to the WHO First International Standard and expressed in international units (BAU per mL). Results: The study participants were divided into 2 groups: 30 people (50%) were vaccinated with Sputnik-V (Gam-COVID-Vac) and 30 people (50%) were vaccinated with Sinopharm (BBIBP-CorV). The groups had no difference in sex composition. The highest antibody levels were observed 42 days after vaccination in both the seronegative group (P = .006) and the seropositive group (P < .001). At 6 months after vaccination, the IgG value declined much farther among the seronegative group (P = .003) compared to those who had recovered from COVID-19 before vaccination. However, the “hybrid immunity” generated by the Sputnik-V vaccine had greater strength and duration (P < .001). Conclusions: This study showed that IgG levels in vaccinated individuals who previously recovered from SARS-CoV-2 infection (“hybrid immunity”) were higher than in SARS-CoV-2–naïve individuals. In a comparative part of the study, the Sputnik-V vaccine had greater strength and duration of immune response across the 6-month observation period (P < .001).
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- 2023
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47. On the Regulation of Arterial Blood Pressure by an Intracranial Baroreceptor
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Chapman, Pippa, primary, Korsak, Alla, additional, Kellett, Daniel, additional, Marina, Nephtali, additional, and Gourine, Alexander, additional
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- 2024
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48. The cytoplasm of living cells can sustain transient and steady intracellular pressure gradients
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Malboubi, Majid, primary, Esteki, Mohammad Hadi, additional, Korsak, Lulu I, additional, Petrie, Ryan J, additional, Moeendarbary, Emad, additional, and Charras, Guillaume, additional
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- 2024
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49. Microbiological safety of sliced tomatoes and onions in case of storage at room temperature
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Feys, Kim, primary, De Zutter, Lieven, additional, Herman, Lieve, additional, Korsak, Nicolas, additional, Van Hoorde, Koenraad, additional, Rajkovic, Andreja, additional, Scippo, Marie‐Louise, additional, and Ameryckx, Annemie Geeraerd, additional
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- 2024
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50. THE EFFECT OF GABA-BENZODIAZEPINE RECEPTOR COMPLEX MODULATORS (MPTD-01 AND BS 34-20) ON THE CEREBRAL CORTEX AFTER EXPERIMENTAL BRAIN INJURY
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Shemet, Ya.A., primary, Ziablitsev, S.V., additional, Likhodiievskyi, V.V., additional, Korsak, A.V., additional, Sychov, O.O., additional, and Chukhrai, S.M., additional
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- 2024
- Full Text
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