47 results on '"Koushik Dhara"'
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2. Endoplasmic Reticulum-Targeted Fluorescent Probes for Metal-Free Tracking of Carbon Monoxide in Living Cells
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Koushik Dhara, Arnab Sarkar, Samaresh Hansda, Tiasha Dutta, Sourav Ghoshal, Sujay Mukhopadhyay, Pranab Sarkar, Sushil Kumar Mandal, Nimai Chandra Saha, and Pabitra Chattopadhyay
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- 2023
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3. Encapsulation and Stabilization of a Donor–Acceptor Stenhouse Adduct Isomer in Water Inside the Blue Box: A Combined Experimental and Theoretical Approach
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Koushik Dhara, Sujay Mukhopadhyay, Pranab Sarkar, Arnab Sarkar, Sourav Ghoshal, and Pabitra Chattopadhyay
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Barbituric acid ,010304 chemical physics ,Binding energy ,Water ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Fluorescence ,0104 chemical sciences ,Surfaces, Coatings and Films ,Adduct ,chemistry.chemical_compound ,Photochromism ,Spectrometry, Fluorescence ,Isomerism ,chemistry ,0103 physical sciences ,Materials Chemistry ,Molecule ,Density functional theory ,Physical and Theoretical Chemistry ,Derivative (chemistry) - Abstract
We synthesized two types of donor-acceptor Stenhouse adducts (DASAs), a new type of photochromic molecules showing dual color in two different isomeric forms in solution phase, using Meldrum acid (DASA-Mel) and barbituric acid (DASA-Bar), along with a naphthalimide derivative to obtain interesting fluorescence properties. DASA-Mel was found to have fast photochromic conversion in comparison to DASA-Bar, evident from ultraviolet-visible (UV-vis) and fluorescence spectroscopic studies. The colored form of DASA-Mel was encapsulated inside the water-soluble Stoddart's blue box and became soluble in water much faster than DASA-Bar. Interestingly, the competitive encapsulation experiment showed that DASA-Mel was selectively encapsulated inside the blue box in water whereas DASA-Bar was mostly separated out from the solution after centrifugation, and this phenomenon was confirmed by 1H and DOSY NMR and mass spectroscopies. Moreover, we found through density functional theory (DFT) optimization that the open form of DASA-Mel was more stable during the encapsulation reaction in a water medium in comparison to DASA-Bar. The calculated binding energies of encapsulated DASA-Mel and DASA-Bar are -10.2 and -9.9 kcal/mol, respectively, clearly showing that the former is more stable by 0.3 kcal. Consequently, the organic macrocycle selectively separating one kind of DASA from a mixture by encapsulation in water is reported for the first time with experimental and theoretical support in the literature.
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- 2021
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4. Bilirubin Quantification in Human Blood Serum by Deoxygenation Reaction Switch-Triggered Fluorescent Probe
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Asit Mondal, Nimai Chandra Saha, Arnab Sarkar, Somenath Lohar, Pabitra Chattopadhyay, Ejaj Ahmmed, Sujaya Chakraborty, and Koushik Dhara
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HEPES ,Chromatography ,Human blood ,Bilirubin ,Metal ions in aqueous solution ,Biochemistry (medical) ,Biomedical Engineering ,General Chemistry ,Highly selective ,Coumarin ,Fluorescence ,Biomaterials ,chemistry.chemical_compound ,chemistry ,heterocyclic compounds - Abstract
A coumarin-based fluorescent compound, Bilirubin Fluorescent Probe N-oxide (BFPNox), was successfully designed and synthesised for highly selective and sensitive detection of free bilirubin with sh...
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- 2020
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5. A new half-condensed Schiff base platform: structures and sensing of Zn2+ and H2PO4− ions in an aqueous medium
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Koushik Dhara, Pabitra Chattopadhyay, Sujaya Chakraborty, Somenath Lohar, Ennio Zangrando, Raktim Ghosh, and Somasri Dam
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Inorganic Chemistry ,In situ ,chemistry.chemical_compound ,Crystallography ,Schiff base ,chemistry ,Aqueous medium ,Fluorescence microscope ,Moiety ,Absorption (chemistry) ,Selectivity ,Ion - Abstract
A newly designed and synthesized half-condensed organic moiety 2-hydroxy-5-methyl-3-[(2-phenylamino-phenylimino)-methyl]-benzaldehyde (HL') and a Zn2L4 complex sequentially detect Zn2+ and H2PO4- ions as low as 1.13 nM and1.23 μM, respectively. HL' and a dinuclear Zn(ii) complex of in situ generated L- in a solution formulated as Zn2L4 under investigation were characterized by physicochemical and spectroscopic studies along with detailed structural analyses by single-crystal X-ray crystallography. The selectivity and sensitivity of HL' towards Zn2+ ions and of the Zn2L4 complex towards H2PO4- ions are based on CHEF and via displacement pathways, respectively. Dual sensing of Zn2+ ions and H2PO4-ions in an aqueous medium via "Green-Blue-Green" emission with the reversible transformation of in situ formed HL' to HL was established by detailed electronic absorption and emission spectroscopic studies. This non-cytotoxic probe (HL', i.e. produced HL in solution) and Zn2L4 complexes are able to monitor the subcellular distribution changes of Zn2+ and H2PO4- ions, respectively, by fluorescence microscopy using the human semen sample.
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- 2020
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6. A Lysosome-Targetable Fluorescence Sensor for Ultrasensitive Detection of Hg2+ in Living Cells and Real Samples
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Koushik Dhara, Arnab Sarkar, Nimai Chandra Saha, Ejaj Ahmmed, Sushil Kumar Mandal, Sujaya Chakraborty, Pabitra Chattopadhyay, and Somenath Lohar
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Detection limit ,0303 health sciences ,Fluorophore ,General Medicine ,010501 environmental sciences ,Toxicology ,01 natural sciences ,Fluorescence ,Metal ,03 medical and health sciences ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,visual_art ,Lysosome ,Microscopy ,Fluorescence microscope ,visual_art.visual_art_medium ,Biophysics ,medicine ,Molecule ,030304 developmental biology ,0105 earth and related environmental sciences - Abstract
A new lysosome-targetable fluorescence sensor, Lyso-HGP, was designed and synthesized based on 4-methyl-2,6-diformylphenol as a fluorophore. Lyso-HGP displays highly sensitive fluorescent detection of Hg2+ in HEPES buffer solution (10 mM, DMSO 1%) of pH 7.0 at 37 °C due to the formation of highly fluorescent formyl-functionalized derivative Lyso-HGP-CHO. The sensor triggered a "turn-on" fluorescence response to Hg2+ with a simultaneous increase of fluorescence intensity by 180-fold just after 10 min. The response is very selective over a variety of biologically relevant cations, anions, molecules, and competitive toxic heavy metal cations. The limit of detection (LOD) was calculated as low as 6.82 nM. So, it can be utilized to detect this toxic heavy metal in biology and environmental samples in an aqueous buffer medium. Also, the sensor is able to monitor the subcellular distribution of Hg2+ specifically localized in the lysosome's compartment in the MCF7 human breast cancer cell line by fluorescence microscopy.
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- 2019
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7. Recent Advances in Fluorescence Light-Up Endogenous and Exogenous Carbon Monoxide Detection in Biology
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Arnab Sarkar, Sujay Mukhopadhyay, Pabitra Chattopadhyay, and Koushik Dhara
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Cell Nucleus ,Carbon Monoxide ,Molecular Structure ,Chemistry ,Cells ,Organic Chemistry ,Nanotechnology ,General Chemistry ,Biochemistry ,Fluorescence ,Mitochondria ,Humans ,Light Up ,Lysosomes ,Fluorescent Dyes - Abstract
Considerable attention has been paid by the scientific community to detect toxic carbon monoxide (CO) in sub-cellular organelles like mitochondria, lysosomes, nuclei, etc. due to their generation and accumulation through numerous biological processes and their role as signal transducer, therapeutics, etc. Various methods are also available for detection of CO, but fluorescence light-up detection is considered the best due to its easy and accurate sensing capability. As of now, no review is available in the literature dedicated to fluorescent detection of only CO both in vitro and in vivo, but considering the huge amount of work reporting every year, it is necessary to have an account of all the recent significant works devoted to it. This review will give special attention to the most noteworthy development of fluorescent light-up probes for the detection of cellular and sub-cellular targetable CO starting from 2012 and emphasizing also the mechanism of action and the applications.
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- 2020
8. A new half-condensed Schiff base platform: structures and sensing of Zn
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Sujaya, Chakraborty, Somenath, Lohar, Koushik, Dhara, Raktim, Ghosh, Somasri, Dam, Ennio, Zangrando, and Pabitra, Chattopadhyay
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A newly designed and synthesized half-condensed organic moiety 2-hydroxy-5-methyl-3-[(2-phenylamino-phenylimino)-methyl]-benzaldehyde (HL') and a Zn
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- 2020
9. A naphthalimide-based fluorescence ‘‘turn-on’’ chemosensor for highly selective detection of carbon monoxide: imaging applications in living cells
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Jatindra N. Bhakta, Koushik Dhara, Ejaj Ahmmed, Sushil Kumar Mandal, Ayan Patra, Pabitra Chattopadhyay, Somenath Lohar, and Biswajit Das
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Detection limit ,010405 organic chemistry ,Metal ions in aqueous solution ,chemistry.chemical_element ,General Chemistry ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Sulfur ,Fluorescence ,Oxygen ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Materials Chemistry ,Nitro ,Derivative (chemistry) ,Carbon monoxide - Abstract
A naphthalimide-based fluorescence chemosensor, COFP, was designed and synthesized for the detection of carbon monoxide (CO) in HEPES buffer (pH 7.4, 37 °C). The detection process is highly selective towards CO, over a variety of relevant reactive oxygen, nitrogen, and sulfur species. Also, the fluorescence response is not hampered in the presence of biologically relevant metal ions and/or species. The detection method was achieved through the transformation of the nitro group of COFP to an amino functionalized derivative in the presence of CO without using any heavy metals e.g. Pd, Rh, Ru etc. The chemosensor prompted a ‘turn-on’ fluorescence response to CO with a simultaneous increase of the fluorescence intensity by more than 33 times. The LOD (limit of detection) was calculated to be as low as 123 nM using the 3σ method. Moreover, the chemosensor is capable of monitoring the changes in intracellular CO in the C6 glioma cell line.
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- 2018
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10. A Nuclear-Localized Naphthalimide-Based Fluorescent Light-Up Probe for Selective Detection of Carbon Monoxide in Living Cells
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Somasri Dam, Koushik Dhara, Chandrani Fouzder, Pabitra Chattopadhyay, Rakesh Kundu, Ejaj Ahmmed, Sujaya Chakraborty, and Arnab Sarkar
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Cell Survival ,010501 environmental sciences ,Toxicology ,Photochemistry ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,Fluorescent light ,Animals ,Humans ,030304 developmental biology ,0105 earth and related environmental sciences ,Fluorescent Dyes ,Cell Nucleus ,0303 health sciences ,Carbon Monoxide ,Molecular Structure ,Optical Imaging ,food and beverages ,General Medicine ,Fluorescence ,Transformation (genetics) ,Naphthalimides ,RAW 264.7 Cells ,Spectrometry, Fluorescence ,chemistry ,Aqueous buffer ,A549 Cells ,Carbon monoxide - Abstract
A nuclear-localized fluorescent light-up probe, NucFP-NO2, was designed and synthesized that can detect CO selectively in an aqueous buffer (pH 7.4, 37 °C) through the CO-mediated transformation of...
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- 2020
11. A Lysosome-Targetable Fluorescence Sensor for Ultrasensitive Detection of Hg
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Arnab, Sarkar, Sujaya, Chakraborty, Somenath, Lohar, Ejaj, Ahmmed, Nimai Chandra, Saha, Sushil Kumar, Mandal, Koushik, Dhara, and Pabitra, Chattopadhyay
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Microscopy, Fluorescence ,Molecular Structure ,Phenols ,Cell Survival ,Limit of Detection ,Optical Imaging ,MCF-7 Cells ,Tumor Cells, Cultured ,Humans ,Mercury ,Lysosomes ,Fluorescent Dyes - Abstract
A new lysosome-targetable fluorescence sensor, Lyso-HGP, was designed and synthesized based on 4-methyl-2,6-diformylphenol as a fluorophore. Lyso-HGP displays highly sensitive fluorescent detection of Hg
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- 2019
12. Highly Sensitive Ratiometric Chemosensor and Biomarker for Cyanide Ions in the Aqueous Medium
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Santi P. Sinha Babu, Pabitra Chattopadhyay, Koushik Dhara, Priya Roy, and Somenath Lohar
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Nucleophilic addition ,Chemistry ,General Chemical Engineering ,Cyanide ,Inorganic chemistry ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Article ,0104 chemical sciences ,lcsh:Chemistry ,chemistry.chemical_compound ,Nucleophile ,Benzothiazole ,lcsh:QD1-999 ,Electrophile ,Molecule ,Ethanesulfonic acid ,0210 nano-technology ,Fukui function - Abstract
A newly designed cyanide-selective chemosensor based on chromone containing benzothiazole groups [3-(2,3-dihydro-benzothiazol-2-yl)-chromen-4-one (DBTC)] was synthesized and structurally characterized by physico-chemical, spectroscopic, and single-crystal X-ray diffraction analyses. The compound DBTC can detect cyanide anions based on nucleophilic addition as low as 5.76 nM in dimethyl sulfoxide–N-(2-hydroxyethyl)piperazine-N′-ethanesulfonic acid buffer (20 mM, pH 7.4) (v/v = 1:3). The binding mode between receptor DBTC and cyanide nucleophile has also been demonstrated by experimental studies using various spectroscopic tools and theoretical studies, and the experimental work has also been verified by characterizing one supporting compound of similar probable structure of the final product formed between DBTC and cyanide ion (DBTC–CN compound) by single-crystal X-ray analysis for detailed structural analyses. In theoretical study, density functional theory procedures have been used to calculate the molecular structure and the calculation of the Fukui function for evaluation of the electrophilic properties of each individual acceptor atom. Furthermore, the efficacy of the probe (DBTC) to detect the distribution of CN– ions in living cells has been checked by acquiring the fluorescence image using a confocal microscope. Notably, the paper strips with DBTC were prepared, and these could serve as efficient and suitable CN– test kits successfully.
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- 2018
13. A fluorescent probe for the selective detection of creatinine in aqueous buffer applicable to human blood serum
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Koushik Dhara, Pabitra Chattopadhyay, Manjira Mukherjee, Siddhartha Pal, and Somenath Lohar
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Metal ions in aqueous solution ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Catalysis ,chemistry.chemical_compound ,Materials Chemistry ,Humans ,Fluorescent Dyes ,Creatinine ,Chromatography ,Human blood ,Phosphate buffered saline ,Metals and Alloys ,Water ,General Chemistry ,021001 nanoscience & nanotechnology ,Fluorescence ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Naphthalimides ,chemistry ,Aqueous buffer ,Ceramics and Composites ,Water chemistry ,Creatinine blood ,0210 nano-technology - Abstract
A naphthalimide-based fluorescence light-up probe, FCP-Pd, has been designed and synthesized for selective detection and quantitation of creatinine in PBS buffer of pH 7.2 at 37 °C with a 'turn-on' response over a variety of interfering metal ions and/or anions and several biologically significant species. This probe is highly effective in estimating creatinine in human blood serum, which confirms the reliability and accuracy of this new system to be applied in clinical and toxicological analysis.
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- 2016
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14. A New Lysosome-Targetable Turn-On Fluorogenic Probe for Carbon Monoxide Imaging in Living Cells
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Swadhin Kumar Saha, Pabitra Chattopadhyay, Somenath Lohar, Priya Roy, Ayan Patra, Koushik Dhara, and Gobinda Chandra Sadhukhan
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Fluorophore ,Cell Survival ,Nitrogen Dioxide ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Oxygen ,Analytical Chemistry ,chemistry.chemical_compound ,Lysosome ,medicine ,Humans ,Fluorescent Dyes ,Carbon Monoxide ,Molecular Structure ,Optical Imaging ,Compartment (chemistry) ,021001 nanoscience & nanotechnology ,Fluorescence ,0104 chemical sciences ,Naphthalimides ,medicine.anatomical_structure ,Spectrometry, Fluorescence ,chemistry ,Biophysics ,Nitro ,MCF-7 Cells ,0210 nano-technology ,Lysosomes ,Intracellular ,Carbon monoxide - Abstract
A lysosome-targetable fluorogenic probe, LysoFP-NO2, was designed and synthesized based on a naphthalimide fluorophore that can detect selectively carbon monoxide (CO) in HEPES buffer (pH 7.4, 37 °C) through the transformation of the nitro group into an amino-functionalized system in the presence of CO. LysoFP-NO2 triggered a “turn-on” fluorescence response to CO with a simultaneous increase of fluorescence intensity by more than 75 times. The response is selective over a variety of relevant reactive nitrogen, oxygen, and sulfur species. Also, the probe is an efficient candidate for monitoring changes in intracellular CO in living cells (MCF7), and the fluorescence signals specifically localize in the lysosome compartment.
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- 2018
15. A new fluorogenic probe for the selective detection of carbon monoxide in aqueous medium based on Pd(0) mediated reaction
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Sushil Kumar Mandal, Manjira Mukherjee, Siddhartha Pal, Koushik Dhara, Somenath Lohar, Pabitra Chattopadhyay, and Buddhadeb Sen
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chemistry.chemical_element ,Photochemistry ,Mass spectrometry ,Oxygen ,Catalysis ,chemistry.chemical_compound ,Coumarins ,Cell Line, Tumor ,Materials Chemistry ,Humans ,Fluorescent Dyes ,Carbon Monoxide ,Sulfur Compounds ,Metals and Alloys ,Water ,General Chemistry ,Coumarin ,Reactive Nitrogen Species ,Nitrogen ,Sulfur ,Fluorescence ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Spectrometry, Fluorescence ,Lead ,Microscopy, Fluorescence ,chemistry ,Cyclization ,Intramolecular force ,Ceramics and Composites ,Reactive Oxygen Species ,Carbon monoxide - Abstract
A coumarin-based fluorogenic probe, PCO-1, senses carbon monoxide (CO) selectively in HEPES buffer at pH 8.0 through the intramolecular cyclization-elimination pathway based on Pd(0) mediated reaction. The probe exhibits a 'turn-on' response of CO over a variety of relevant reactive oxygen, nitrogen and sulfur species.
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- 2015
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16. A water soluble FRET-based ratiometric chemosensor for Hg(<scp>ii</scp>) and S2−applicable in living cell staining
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Sushil Kumar Mandal, Anisur Rahman Khuda-Bukhsh, Siddhartha Pal, Manjira Mukherjee, Buddhadeb Sen, Pabitra Chattopadhyay, and Koushik Dhara
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Detection limit ,chemistry.chemical_classification ,Sulfide ,Chemistry ,General Chemical Engineering ,General Chemistry ,Photochemistry ,Fluorescence ,Dissociation (chemistry) ,Ion ,chemistry.chemical_compound ,Förster resonance energy transfer ,Naked eye ,Acetamide - Abstract
A new highly sensitive and selective Hg(II) probe, 2-(rhodamine-b-hydrazido)-N-(quinolin-8-yl)acetamide (L1) was developed and characterized. L1 specifically binds to Hg(II) in the presence of a large excess of other competing ions with visually observable changes in both electronic and fluorescence spectral behaviour to make possible the naked eye detection of Hg(II) at a very low level (up to 4.5 × 10−7 M) through a fluorescence resonance energy transfer (FRET) process in HEPES buffer (1 mM, pH 7.4; 2% EtOH) at 25 °C. The theoretical and experimental kinetic study also support the binding of Hg(II) ion to induce the opening of the spirolactam ring in L1 for enabling the FRET process. Further studies reveal that the selective dissociation of the L–Hg complex in the presence of sulphide anions to restore the native structure of L1 is also useful in the detection of sulfide anions with a detection limit of a submicromolar range in the same medium of HEPES buffer (1 mM, pH 7.4; 2% EtOH) at 25 °C. L1 could be employed as a FRET based time dependent reversible chemosensor for imaging Hg(II) in living cells and whole bodies, and also could be used as an imaging probe for the detection of sulfide anions in HeLa cells.
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- 2014
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17. Synthesis, characterization and selective fluorescent zinc(II) sensing property of three Schiff-base compounds
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Koushik Dhara, Pradyot Banerjee, Mario Manassero, and Partha Roy
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Schiff base ,Ligand ,Metal ions in aqueous solution ,Inorganic chemistry ,chemistry.chemical_element ,Quantum yield ,Zinc ,Binding constant ,Fluorescence spectroscopy ,Inorganic Chemistry ,Crystallography ,chemistry.chemical_compound ,chemistry ,Materials Chemistry ,Physical and Theoretical Chemistry ,Acetonitrile - Abstract
Three Schiff-base compounds, 4-methyl-2,6-bis(1-(2-piperidinoethyl)iminomethyl)-phenol (HL1), 4-methyl-2,6-bis(1-(2-pyrrolidinoethyl)- iminomethyl)-phenol (HL2) and (4-methyl-2,6-bis(1-(2-morpholinoethyl)iminomethyl)-phenol) (HL3), have been synthesized and characterized by elemental analysis, FT-IR, 1H NMR, UV–Vis, electrospray ionisation mass and fluorescence spectroscopy. The emission quantum yield of the compounds increases by ca. 10–17 times by the addition of Zn2+ ion. Introduction of other metal ions of biological and environmental relevance either keeps unaltered or quenches the emission intensity of the ligands. This happens because of large binding constant (∼104 M−1) of the ligand with Zn2+ ion in acetonitrile. Each of the three ligands forms 1: 2 (ligand:metal) complexes which are characterized by single crystal X-ray diffraction analyses. This imposes rigidity to the ligand due to the complexation and, as a result, the radiative decay constant increases and the corresponding nonradiative decay parameter decreases. All of the ligands react with zinc chloride in acetonitrile to form dinuclear complexes which have been characterized by the elemental analysis, FT-IR, UV–Vis, electrospray ionisation mass spectroscopies and single crystal X-ray structural determinations.
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- 2009
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18. Synthesis, characterization and fluorescence properties of hexanuclear zinc(II) complexes
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Koushik Dhara, Pradyot Banerjee, Partha Roy, and Mario Manassero
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Schiff base ,chemistry.chemical_element ,Zinc ,Crystal structure ,Fluorescence ,Characterization (materials science) ,Inorganic Chemistry ,chemistry.chemical_compound ,Trigonal bipyramidal molecular geometry ,Crystallography ,chemistry ,Octahedron ,Elemental analysis ,Materials Chemistry ,Physical and Theoretical Chemistry - Abstract
Two hexanuclear zinc(II) complexes, [Zn6(L1)2(μ2-OH)2(μ2-CH3COO)8] · CH3CN (1 · CH3CN) and [Zn6(L2)2(μ2-OH)2(μ2-CH3COO)8] · 4CH3CN (2 · 4CH3CN), where HL1 = 4-methyl-2,6-bis(cyclohexylmethyliminomethyl)-phenol and HL2 = 4-methyl-2,6-bis(1-naphthalylmethyliminomethyl)-phenol, have been synthesized and characterized by elemental analysis, FT-IR and fluorescence spectroscopic methods, and by X-ray diffraction analysis. In the asymmetric unit of complex 1, two of the three zinc atoms have pentacoordinate geometries and the other is tetrahedrally coordinated, whereas the three distinct Zn atoms in complex 2 adopt three different coordination environments, namely distorted octahedral, trigonal bipyramidal and tetrahedral. The fluorescence properties of the ligands and complexes have been investigated.
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- 2009
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19. Selective Zinc(II)-Ion Fluorescence Sensing by a Functionalized Mesoporous Material Covalently Grafted with a Fluorescent Chromophore and Consequent Biological Applications
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Mahasweta Nandi, Koushik Dhara, Pradyot Banerjee, Asim Bhaumik, Krishanu Sarkar, and Partha Roy
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Fluorophore ,Materials science ,Inorganic chemistry ,Chromophore ,Mesoporous silica ,Condensed Matter Physics ,Photochemistry ,Fluorescence ,Electronic, Optical and Magnetic Materials ,Biomaterials ,Mesoporous organosilica ,chemistry.chemical_compound ,chemistry ,Electrochemistry ,Fourier transform infrared spectroscopy ,Hybrid material ,Mesoporous material - Abstract
A highly ordered 2D-hexagonal mesoporous silica material is functionalized with 3-aminopropyltriethoxysilane. This organically modified mesoporous material is grafted with a dialdehyde fluorescent chromophore, 4-methyl-2,6-diformyl phenol. Powder X-ray diffraction, transmission electron microscopy, N2 sorption, Fourier transform infrared spectroscopy, and UV-visible absorption and emission have been employed to characterize the material. This material shows excellent selective Zn2+ sensing, which is due to the fluorophore moiety present at its surface. Fluorescence measurements reveal that the emission intensity of the Zn2+-bound mesoporous material increases significantly upon addition of various concentrations of Zn2+, while the introduction of other biologically relevant (Ca2+, Mg2+, Na+, and K+) and environmentally hazardous transition-metal ions results in either unchanged or weakened intensity. The enhancement of fluorescence is attributed to the strong covalent binding of Zn2+, evident from the large binding constant value (0.87 × 104M−1). Thus, this functionalized mesoporous material grafted with the fluorescent chromophore could monitor or recognize Zn2+ from a mixture of ions that contains Zn2+ even in trace amounts and can be considered as a selective fluorescent probe. We have examined the application of this mesoporous zinc(II) sensor to cultured living cells (A375 human melanoma and human cervical cancer cell, HeLa) by fluorescence microscopy.
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- 2009
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20. A new organic compound for the synthesis of gold nanoparticles
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Koushik Dhara, Mario Manassero, Pradyot Banerjee, and Partha Roy
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chemistry.chemical_classification ,Hydroquinone ,Inorganic chemistry ,Crystal structure ,Organic compound ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Elemental analysis ,Transmission electron microscopy ,Colloidal gold ,Morpholine ,Materials Chemistry ,Physical and Theoretical Chemistry ,Single crystal - Abstract
2,3,5,6-Tetrakis-(morpholinomethyl)hydroquinone (1) is used for the first time in the preparation of gold nanoparticles by the reduction of HAuCl4 in water–methanol medium without using any capping agent. Compound 1 was prepared by Mannich-type aminomethylation of hydroquinone with morpholine. It is characterized by elemental analysis, FT-IR, UV–Vis and mass spectra and finally by single crystal X-ray diffraction. The ratio of HAuCl4 and compound 1 played a vital role in controlling the shape and size of gold nanoparticles. The samples were characterized by Transmission Electron Microscopy (TEM), XRD, FT-IR, UV–Vis measurements. With the increasing amount of gold(III) solution with respect to compound 1, two different morphologies such as self-assembled and spherical gold nanoparticles have been observed. The results indicate that the morphology of gold nanoparticles with different sizes can be controlled by changing the concentrations of compound 1 and gold(III) solution.
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- 2008
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21. Nanowires of Metal−Organic Complex by Photocrystallization: A System To Achieve Addressable Electrically Bistable Devices and Memory Elements
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Koushik Dhara, Amlan J. Pal, Arup K. Rath, and Pradyot Banerjee
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Bistability ,Nanowire ,Nanotechnology ,Surfaces and Interfaces ,Substrate (electronics) ,Condensed Matter Physics ,Photochemistry ,Organic memory ,Charge-transfer complex ,Benzoquinone ,Photoexcitation ,chemistry.chemical_compound ,chemistry ,Electrochemistry ,General Materials Science ,Acetonitrile ,Spectroscopy - Abstract
A new method has been achieved to form a Cu:benzoquinone derivative (DDQ) charge-transfer complex by the photoexcitation of [Cu(DDQ)2(CH 3COO)2] ( 1) that has been synthesized by the reaction of DDQ and hydrated cupric acetate in acetonitrile. Photoexcitation of coordinated complex 1 leads to the formation of charge-transfer complex Cu2+(DDQ(.-)2 ( 2). The charge transfer complex 2, when spun on solid substrates, forms nanowires. Sandwich structures of 2 exhibit electrical bistability associated with memory phenomenon. Read-only and random-access memory phenomena are evidenced in nanowires of 2 providing a route to attend the issues pertaining to the addressibility of organic memory devices.
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- 2008
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22. Mild Synthesis of a Family of Planar Triazinium Cations via Proton-Assisted Cyclization of Pyridyl Containing Azo Compounds and Studies on DNA Intercalation
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Mominul Sinan, Sreebrata Goswami, Abhrajyoti Ghosh, Manashi Panda, Koushik Dhara, P. E. Fanwick, and D. J. Chattopadhyay
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Models, Molecular ,Circular dichroism ,Cell Survival ,Pyridines ,Crystallography, X-Ray ,Photochemistry ,Biochemistry ,Catalysis ,Fluorescence spectroscopy ,Cell Line ,law.invention ,Coulometry ,Colloid and Surface Chemistry ,law ,Cations ,Chlorocebus aethiops ,Animals ,Humans ,Electron paramagnetic resonance ,Molecular Structure ,Viscosity ,Chemistry ,Circular Dichroism ,Electron Spin Resonance Spectroscopy ,DNA ,General Chemistry ,Bond length ,Crystallography ,DNA Intercalation ,Cyclization ,Spectrophotometry ,Cattle ,Cyclic voltammetry ,Azo Compounds ,Oxidation-Reduction ,Trifluoromethanesulfonate - Abstract
An efficient synthesis of a family of heteroaromatic triazinium compounds, [2a]X-[2g]X (X = Cl, ClO4, NO3, and HSO4), from 2-(arylazo)pyridines via proton-catalyzed heterocyclization is described. Characterization of the compounds is made by different spectroscopic, electrochemical techniques, as well as single-crystal structure determination of the triflate salt of a representative compound, [2a]CF3SO3. The bond parameters indicate that the tricyclo compound, 2a(+), is planar and aromatic with a N-N bond length of 1.275(6) A. These exhibited fluorescence with an emission maximum in the range of 540-535 nm with moderate quantum yields. The triazinium salts can be reduced in two successive one-electron steps as probed by cyclic voltammetry and coulometry. The paramagnetic radical intermediate 2a(*) is distinguished by a sharp and intense EPR spectrum. Fluorescence spectroscopy, circular dichroism, cyclic voltammetry, viscosity measurements, together with DNA melting studies have been used to characterize the binding of 2a(+) with calf thymus DNA. The emission quenching of the compound by [Fe(CN)6](4-) decreased when bound to DNA. As determined by a MTT assay, 2a(+) exhibited significant cytotoxicity at a higher concentration range of 1 mg/mL to 1 microg/mL; however, the % survival ratio increased with dilution. Cellular uptake studies of the referenced compound were followed by FACS analysis.
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- 2008
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23. A copper(II) complex with rare μ1,1,1-azide ligand: Active catalyst for heterogeneous olefin epoxidation
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Pradyot Banerjee, Koushik Dhara, Partha Roy, and Mario Manassero
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Olefin fiber ,Chemistry ,chemistry.chemical_element ,Mesoporous silica ,Heterogeneous catalysis ,Copper ,Catalysis ,Inorganic Chemistry ,chemistry.chemical_compound ,Elemental analysis ,Polymer chemistry ,Materials Chemistry ,Organic chemistry ,Phenol ,Azide ,Physical and Theoretical Chemistry - Abstract
A copper(II) complex [Cu2L(μ1,1-N3)(μ1,3-N3)(μ1,1,1-N3)] (1) where HL = 4-methyl-2,6-bis(phenylmethyliminomethyl)phenol, with N2O donor ligand was synthesized and characterized by elemental analysis, FT-IR spectra and X-ray crystallography. X-ray crystallographic study reveals that it is a 1D chain along crystallographic b axis and the existence of rare μ1,1,1-azide bridging mode. The complex was immobilized on mesoporous silica and the immobilized compound was used as the active catalyst for the oxidation of olefins using tert-butyl hydroperoxide as oxidant. The results show that corresponding epoxides were produced in high yield with high selectivity.
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- 2008
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24. A highly enantioselective chiral Schiff-base fluorescent sensor for mandelic acid
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Mahasweta Nandi, Koushik Dhara, Krishanu Sarkar, Partha Roy, Pradyot Banerjee, and Asim Bhaumik
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Schiff base ,Chemistry ,Organic Chemistry ,Enantioselective synthesis ,Mandelic acid ,Biochemistry ,Fluorescence ,Fluorescence intensity ,chemistry.chemical_compound ,Drug Discovery ,Organic chemistry ,Phenol ,Enantiomer ,Chiral derivatizing agent - Abstract
A chiral Schiff-base compound, 4-methyl-2,6-bis-[(2-hydroxy-1-phenylethylimino)methyl]phenol, is found to act as highly enantioselective fluorescent agent for α-hydroxycarboxylic acid, e.g., mandelic acid. It is observed that, within a certain concentration range, one enantiomer of the chiral acid can increase the fluorescence intensity of the Schiff-base compound 122-fold while the other enantiomer enhances the intensity only 42-fold. Such highly enantioselective responses towards the chiral acid make the unusual Schiff-base compound attractive as a fluorescent sensor for determining the enantiomeric composition of α-hydroxycarboxylic acids.
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- 2008
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25. Enhanced Emission from Single Component Organic Core–Shell Nanoparticles
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Pradyot Banerjee, Asim Bhaumik, Partha Roy, Krishanu Sarkar, and Koushik Dhara
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Materials science ,Biomedical Engineering ,Nucleation ,Quantum yield ,Nanoparticle ,Bioengineering ,General Chemistry ,Condensed Matter Physics ,Photochemistry ,Fluorescence ,Oligomer ,Fluorescence spectroscopy ,chemistry.chemical_compound ,Reaction rate constant ,chemistry ,Molecule ,General Materials Science - Abstract
By one-step mixed-solvent mediated approach, we have prepared fluorescent organic core–shell nanoparticles with an oligomer (1) derived from the Schiff base condensation reaction of 2,6-diformyl-4-methylphenol and o-phenylenediamine at room temperature. The core and shell structures are generated by the same oligomer (1) featuring the aggregation structure in core different from that in shell. The radial packing factor distribution of oligomer cluster depending on the solvent interaction in the time of nucleation is mainly responsible for the single component core–shell formation. Different morphologies of the core–shell nanospheres (CSNS) and core–shell nanohemispheres (CSNHS) were generated simply by changing the concentration of 1 in chloroform-methanol mixed solvent (1:2). We observed that fluorescent emission from those core–shell nanoparticles is intense whereas as-synthesized oligomer (1) itself is non-fluorescent in dilute solution. The enhanced emission in the core–shell form with more than 50 times increase in fluorescent quantum yield vis-à-vis 1 is a remarkable feature of the study. As UV absorption spectra of nanoparticles are blue-shifted relative to their properties in solution, the observed strong emission in the solid state makes the oligomer an outstanding exception to a well-established rule based on the molecular exciton model. The core–shell nanoparticles have been characterized by FE-SEM, TEM, XRD, nanosecond (ns) time-resolved fluorescence dynamics, UV-Vis and fluorescence spectroscopy. The longer fluorescence lifetimes (τ) of core–shell nanoparticles (3.50 ns and 3.52 ns for CSNS and CSNHS respectively) than 1 as-synthesized (1.28 ns) implies that the formation of the nanoparticles restricts the rotation and vibration of the groups in the molecules. The factor that induces fluorescent enhancement of nanoparticles is mainly ascribed to the increase of radiative rate constant (kr) and simultaneous decrease of nonradiative rate constant (knr).
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- 2007
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26. Synthesis, crystal structure, magnetic property and DNA cleavage activity of a new terephthalate-bridged tetranuclear copper(II) complex
- Author
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Mario Manassero, Koushik Dhara, Partha Roy, Jagnyeswar Ratha, and Pradyot Banerjee
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Stereochemistry ,chemistry.chemical_element ,Crystal structure ,Copper ,Oxygen ,Square pyramidal molecular geometry ,Inorganic Chemistry ,chemistry.chemical_compound ,Crystallography ,chemistry ,Intramolecular force ,Materials Chemistry ,Moiety ,Hydroxyl radical ,pUC19 ,Physical and Theoretical Chemistry - Abstract
A new terephthalate-bridged tetranuclear copper(II) complex has been synthesized and structurally characterized by X-ray crystallography: [Cu4(L)2(tp)(dmf)2] (1) (H3L = 1,3-bis(salicylideneamino)propan-2-ol, tp = terephthalate and dmf = N,N′-dimethylformamide). The dinucleating pentadentate character of the ligand (H3L) and the desired pair-of-dimers arrangement, through the incorporation of the bridging terephthalate moiety, is clearly evident from the structure of 1. The copper atoms are coordinated in a slightly distorted square pyramidal arrangement within each dinucleating half of the complex and are bridged mono-atomically by the secondary alkoxo oxygen of the ligand and di-atomically by the terephthalate moiety. The apical position is occupied by the oxygen atom of the dmf. The structure of 1 reveals a short intramolecular Cu–Cu separation (ca. 3.1 A), in combination with long intramolecular copper separations (ca. 11 A). The variable temperature-dependent susceptibility measurement (2–300 K) of 1 reveals a dominant ferromagnetic coupling, 2J = 18.70 cm−1. Complex 1 binds to double-stranded CT (calf-thymus) DNA giving a Kapp value of 1.25 × 107 M−1 and displays efficient cleavage of supercoiled pUC19 DNA in the presence of H2O2 following a hydroxyl radical pathway.
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- 2007
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27. Supramolecular Architecture in an Oxovanadium(V)-Schiff Base Complex: Synthesis, Ab initio Structure Determination from X-ray Powder Diffraction, DNA Binding and Cleavage Activity
- Author
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Alok K. Mukherjee, Koushik Dhara, Monika Mukherjee, Pradyot Banerjee, Soumen Ghosh, Swastik Mondal, and Jagnyeswar Ratha
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Schiff base ,Supramolecular chemistry ,Ab initio ,Vanadium ,chemistry.chemical_element ,Space group ,General Chemistry ,Crystal structure ,Condensed Matter Physics ,chemistry.chemical_compound ,Crystallography ,chemistry ,General Materials Science ,Powder diffraction ,Monoclinic crystal system - Abstract
The synthesis, spectroscopic characterization, X-ray powder structure determination, and thermal behavior of a binuclear bis(μ-oxo)-bridged vanadium(V) complex, [(VO2L)2], L = N,N‘-dimethylenediamine(o-hydroxyl acetophenon), along with its DNA binding ability and photoinduced DNA cleavage activity, have been described. The compound crystallizes in a monoclinic system with a = 7.679(3) A, b = 12.020(5) A, c = 13.882(6) A, β = 90.799(4)°, space group P21/c, and Z = 2. The crystal structure has been solved from laboratory X-ray powder diffraction data using the direct space approach and refined by the Rietveld method. The dimeric complex consists of two edge-sharing vanadium octahedra with each metal center coordinated to one oxo-, one phenolate-, and two bridging-oxygen ligands, and two nitrogen donor atoms. The molecular structure reveals a two-dimensional grid of (24) rings in the (011) plane, which on combination with one-dimensional polymeric chains along the [100] direction, forms a novel three-dimensi...
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- 2007
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28. Selective Fluorescence Zinc Ion Sensing and Binding Behavior of 4-Methyl-2,6-bis(((phenylmethyl)imino)methyl)phenol: Biological Application
- Author
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Jagnyeswar Ratha, Mario Manassero, Koushik Dhara, Pradyot Banerjee, and Partha Roy
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Molecular Conformation ,chemistry.chemical_element ,Zinc ,Crystallography, X-Ray ,Photochemistry ,Medicinal chemistry ,Absorption ,Inorganic Chemistry ,Mice ,chemistry.chemical_compound ,Phenols ,Cell Line, Tumor ,Animals ,Humans ,Phenol ,Physical and Theoretical Chemistry ,Fluorescence response ,Ions ,Chemistry ,Zinc ion ,Hydrogen-Ion Concentration ,Fluorescence ,Spectrometry, Fluorescence ,Models, Chemical ,Metals ,Excited state ,Luminescence ,Intracellular ,Protein Binding - Abstract
Zinc ion fluorescence sensing and the binding properties of 4-methyl-2,6-bis(((phenylmethyl)imino)methyl)phenol (HL) have been investigated. It displays high selectivity for Zn2+ and can be used as zinc ion-selective luminescent probe for biological application under physiological conditions. The increase in emission in the presence of Zn2+ is accounted for by the formation of hexanuclear complex [Zn6(L)2(OH)2(CH3COO)8] characterized by X-ray crystallography. An approximately 6-fold Zn2+-selective chelation-enhanced fluorescence response in HEPES buffer (pH 7.4) is attributed due to the strong coordination of Zn(II) that would impose rigidity and hence decrease the nonradiative decay of the excited state. By incubation of cultured living cells (B16F10 mouse melanoma and A375 human melanoma) with HL, intracellular Zn2+ concentration could be monitored.
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- 2007
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29. Synthesis, crystal structure, magnetic property and oxidative DNA cleavage activity of an octanuclear copper(II) complex showing water–perchlorate helical network
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Song Gao, Xin-Yi Wang, Pradyot Banerjee, Koushik Dhara, Jagnyeswar Ratha, and Mario Manassero
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Models, Molecular ,Perchlorates ,Coordination sphere ,Molecular Structure ,Hydrogen bond ,Hydrolysis ,Water ,chemistry.chemical_element ,Hydrogen Bonding ,DNA ,Crystal structure ,Crystallography, X-Ray ,Biochemistry ,Copper ,Square pyramidal molecular geometry ,Inorganic Chemistry ,Magnetics ,Crystallography ,Perchlorate ,chemistry.chemical_compound ,chemistry ,Intramolecular force ,Molecule - Abstract
A new octanuclear copper(II) complex has been synthesized and structurally characterized by X-ray crystallography: [Cu(8)(HL)(4)(OH)(4)(H(2)O)(2)(ClO(4))(2)].(ClO(4))(2).2H(2)O (1) (H(3)L=2,6-bis(hydroxyethyliminoethyl)-4-methyl phenol). The complex is formed by the linkage of two terminal bimetallic cationic units and a tetranuclear mu(3)-hydroxo bridged dicubane core by a very short intramolecular hydrogen bond (O-H...O, 1.48(3)A and the angle 175 degrees). The coordination sphere of the terminal copper atoms is square pyramidal, the apical positions being occupied by water and a perchlorate ion. Complex 1 self-assembles to form a new type of water-perchlorate helical network [(H(2)O)(2)(ClO(4))](infinity) involving oxygen atoms of coordinated perchlorate ion and the two lattice water molecules through hydrogen-bonding interaction. The variable temperature-dependent susceptibility measurement (2-300K) of 1 reveals a strong antiferromagnetic coupling, J(1)=-220cm(-1) and J(2)=-98cm(-1) (J(1) and J(2) representing the exchange constant within [Cu(2+)](4) and [Cu(2+)](2) units, respectively). The complex binds to double-stranded supercoiled plasmid DNA giving a K(app) value of 1.2x10(7)M(-1) and displays efficient oxidative cleavage of supercoiled DNA in the presence of H(2)O(2) following a hydroxyl radical pathway.
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- 2007
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30. Effect of substituents on FRET in rhodamine based chemosensors selective for Hg2+ ions
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Siddhartha Pal, Koushik Dhara, Buddhadeb Sen, Sushil Kumar Mandal, Ennio Zangrando, Anisur Rahman Khuda-Bukhsh, Manjira Mukherjee, Pabitra Chattopadhyay, Pal, Siddhartha, Sen, Buddhadeb, Mukherjee, Manjira, Dhara, Koushik, Zangrando, Ennio, Mandal, Sushil Kumar, Khuda Bukhsh, Anisur Rahman, and Chattopadhyay, Pabitra
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Cations, Divalent ,Fluorescent Dye ,Divalent ,Photochemistry ,Biochemistry ,Analytical Chemistry ,Ion ,Rhodamine ,chemistry.chemical_compound ,Cations ,Hydrazine ,Electrochemistry ,Fluorescence Resonance Energy Transfer ,Environmental Chemistry ,Spectroscopy ,Fluorescent Dyes ,Benzaldehydes ,Hydrazines ,Mercury ,Molecular Structure ,Rhodamines ,Chemistry ,Benzaldehyde ,Förster resonance energy transfer - Abstract
The effect of substituents on FRET in two newly designed rhodamine-based Hg(2+) ion selective chemosensors (L¹ and L²) has been explored by a systematic experimental and theoretical study. Comparison of these sensors in the analytical study and imaging of Hg(2+) ions in living cells has also been included.
- Published
- 2014
31. A fluorescent probe for detection of histone deacetylase activity based on aggregation-induced emission
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Koushik Dhara, Reisuke Baba, Yuichiro Hori, and Kazuya Kikuchi
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biology ,Chemistry ,Metals and Alloys ,General Chemistry ,Ethylenes ,Fluorescence ,Catalysis ,Histone Deacetylases ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Histone ,Spectrometry, Fluorescence ,Biochemistry ,Acetylation ,Materials Chemistry ,Ceramics and Composites ,Biophysics ,biology.protein ,Molecule ,Histone deacetylase activity ,Aggregation-induced emission ,Electrostatic interaction ,Enzyme Assays ,Fluorescent Dyes - Abstract
A tetraphenylethylene-derivative fluorescent probe for the one-step detection of histone deacetylases (HDAC) was developed. The deacetylation of the probe triggers electrostatic interaction between the molecules and automatically leads to fluorescence enhancement based on aggregation-induced emission (AIE).
- Published
- 2012
32. A ratiometric fluorescent chemosensor for iron: discrimination of Fe2+ and Fe3+ and living cell application
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Sandipan Sarkar, Koushik Dhara, Anupam Basu, Anuradha Moirangthem, Pabitra Chattopadhyay, Basab Chattopadhyay, and Supriti Sen
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Models, Molecular ,Solution state ,Cell Survival ,Iron ,Analytical chemistry ,Molecular Conformation ,Salt (chemistry) ,Living cell ,Biochemistry ,Chemistry Techniques, Analytical ,Analytical Chemistry ,Absorption ,chemistry.chemical_compound ,Electrochemistry ,Quinazoline ,Environmental Chemistry ,Humans ,Spectroscopy ,Fluorescent Dyes ,chemistry.chemical_classification ,Detection limit ,Fluorescence ,Molecular Imaging ,Spectrometry, Fluorescence ,chemistry ,Quinazolines ,Titration ,Naked eye ,Oxidation-Reduction ,HeLa Cells - Abstract
A newly designed probe, 6-thiophen-2-yl-5,6-dihydrobenzo[4,5]imidazo-[1,2-c] quinazoline (HL(1)) behaves as a highly selective ratiometric fluorescent sensor for Fe(2+) at pH 4.0-5.0 and Fe(3+) at pH 6.5-8.0 in acetonitrile-HEPES buffer (1/4) (v/v) medium. A decrease in fluorescence at 412 nm and increase in fluorescence at 472 nm with an isoemissive point at 436 nm with the addition of Fe(2+) salt solution is due to the formation of mononuclear Fe(2+) complex [Fe(II)(HL)(ClO(4))(2)(CH(3)CN)(2)] (1) in acetonitrile-HEPES buffer (100 mM, 1/4, v/v) at pH 4.5 and a decrease in fluorescence at 412 nm and increase in fluorescence at 482 nm with an isoemissive point at 445 nm during titration by Fe(3+) salt due to the formation of binary Fe(3+) complex, [Fe(III)(L)(2)(ClO(4))(H(2)O)] (2) with co-solvent at biological pH 7.4 have been established. Binding constants (K(a)) in the solution state were calculated to be 3.88 × 10(5) M(-1) for Fe(2+) and 0.21 × 10(3) M(-1/2) for Fe(3+) and ratiometric detection limits for Fe(2+) and Fe(3+) were found to be 2.0 μM and 3.5 μM, respectively. The probe is a "naked eye" chemosensor for two states of iron. Theoretical calculations were studied to establish the configurations of probe-iron complexes. The sensor is efficient for detecting Fe(3+)in vitro by developing a good image of the biological organelles.
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- 2012
33. A new half-condensed Schiff base compound: highly selective and sensitive pH-responsive fluorescent sensor
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Supriti Sen, Monika Mukherjee, Sushil Kumar Mandal, Koushik Dhara, Basab Chattopadhyay, Sander van Smaalen, Pabitra Chattopadhyay, Swastik Mondal, and Uday Chand Saha
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Models, Molecular ,Schiff base ,Molecular Structure ,Organic Chemistry ,Analytical chemistry ,Stereoisomerism ,Hydrogen-Ion Concentration ,Highly selective ,Crystallography, X-Ray ,Biochemistry ,Combinatorial chemistry ,Fluorescence ,Fluorescence intensity ,chemistry.chemical_compound ,chemistry ,Ph range ,Quantum Theory ,Titration ,Physical and Theoretical Chemistry ,Schiff Bases ,Fluorescent Dyes - Abstract
A new probe, 3-[(3-benzyloxypyridin-2-ylimino)methyl]-2-hydroxy-5-methylbenzaldehyde (1-H) behaves as a highly selective fluorescent pH sensor in a Britton-Robinson buffer at 25 °C. The pH titrations show a 250-fold increase in fluorescence intensity within the pH range of 4.2 to 8.3 with a pK(a) value of 6.63 which is valuable for studying many of the biological organelles.
- Published
- 2011
34. A highly selective fluorescent chemosensor for zinc ion and imaging application in living cells
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Pabitra Chattopadhyay, Sushil Kumar Mandal, Madeleine Helliwell, Sandipan Sarkar, Uday Chand Saha, Monika Mukherjee, Anisur Rahman Khuda-Bukhsh, Koushik Dhara, and Basab Chattopadhyay
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Cations, Divalent ,Metal ions in aqueous solution ,Quantum yield ,Buffers ,Photochemistry ,Crystallography, X-Ray ,Inorganic Chemistry ,Cresols ,Cell Line, Tumor ,Humans ,Physical and Theoretical Chemistry ,Incubation ,Melanoma ,Fluorescent Dyes ,Chemistry ,Zinc ion ,Hydrogen-Ion Concentration ,Highly selective ,Fluorescence ,Fluorescence intensity ,Zinc ,Spectrometry, Fluorescence ,Quinazolines ,Benzimidazoles ,HT29 Cells ,Intracellular - Abstract
A new 2,6-bis(5,6-dihydrobenzo[4,5]imidazo[1,2-c]quinazolin-6-yl)-4-methylphenol (1) serves as a highly selective and sensitive fluorescent probe for Zn(2+) in a HEPES buffer (50 mM, DMSO:water = 1:9 (v/v), pH = 7.2) at 25 °C. The increase in fluorescence in the presence of Zn(2+) is accounted for by the formation of dinuclear Zn(2+) complex [Zn(2)(C(35)H(25)N(6)O)(OH)(NO(3))(2)(H(2)O)] (2), characterized by X-ray crystallography. The fluorescence quantum yield of the chemosensor 1 is only 0.019, and it increases more than 12-fold (0.237) in the presence of 2 equiv of the zinc ion. Interestingly, the introduction of other metal ions causes the fluorescence intensity to be either unchanged or weakened. By incubation of cultured living cells (A375 and HT-29) with the chemosensor 1, intracellular Zn(2+) concentrations could be monitored through selective fluorescence chemosensing.
- Published
- 2011
35. A new functionalized mesoporous matrix supported Pd(II)-Schiff base complex: an efficient catalyst for the Suzuki Miyaura coupling reaction
- Author
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Asim Bhaumik, Pabitra Chattopadhyay, Subrata Saha, Krishanu Sarkar, Dipankar Srimani, and Koushik Dhara
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Schiff base ,Materials science ,Inorganic chemistry ,Heterogeneous catalysis ,Coupling reaction ,Catalysis ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,X-ray photoelectron spectroscopy ,Polymer chemistry ,Fourier transform infrared spectroscopy ,High-resolution transmission electron microscopy ,Mesoporous material - Abstract
[EN] A new Pd(II) bounded 2D-hexagonally ordered functionalized MCM-41 type material (IV) has been synthesized. Functionalization was carried out by the anchoring of 3-aminopropyltriethoxysilane in the MCM-41 type mesoporous material, followed by grafting with 2,6-diacetylpyridine (DAP) to give a N-3-type Schiff base chelating attachment for the Pd(II) species. Fourier transform infrared (FTIR), powder X-ray diffraction (PXRD) and high resolution transmission electron microscopy (HRTEM) studies have been used to characterize the material. Material IV behaves as a highly active catalyst towards Suzuki-Miyaura cross-coupling reaction for the synthesis of biaryl organics. In addition, IV acts as a true heterogeneous catalyst in coupling reaction. It was found that this catalyst is highly efficient and recyclable towards Suzuki-Miyaura reaction with high turn over frequencies. X-Ray photoelectron spectroscopic (XPS) analysis was employed to understand the oxidation state of the palladium atom in the catalyst (IV) and its loading in the material., PC acknowledges Department of Science and Technology (DST), New Delhi for financial support.
- Published
- 2010
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36. A two-dimensional coordination compound as a zinc ion selective luminescent probe for biological applications
- Author
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Pradyot Banerjee, Mario Manassero, Biswanath Mallik, Koushik Dhara, Goutam Chandra, Jagnyeswar Ratha, Partha Roy, and Santanu Karan
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inorganic chemicals ,Luminescence ,Inorganic chemistry ,chemistry.chemical_element ,Biosensing Techniques ,Crystallography, X-Ray ,Biochemistry ,Coordination complex ,chemistry.chemical_compound ,Mice ,Phenols ,Fluorescence microscope ,Animals ,chemistry.chemical_classification ,Organic Chemistry ,General Chemistry ,Polymer ,Copper ,Rats ,Crystallography ,Zinc ,Monomer ,chemistry ,Microscopy, Fluorescence ,Molecular Probes ,Alkoxide ,Biosensor - Abstract
A 2D coordination compound {[Cu2(HL)(N3)]ClO4}infinity (1; H3L = 2,6-bis(hydroxyethyliminoethyl)-4-methyl phenol) was synthesized and characterized by single-crystal X-ray diffraction to be a polymer in the crystalline state. Each [Cu2(HL)(N3)]+ species is connected to its adjacent unit by a bridging alkoxide oxygen atom of the ligand to form a helical propagation along the crystallographic a axis. The adjacent helical frameworks are connected by a ligand alcoholic oxygen atom along the crystallographic b axis to produce pleated 2D sheets. In solution, 1 dissociates into [Cu2(HL)2(H3L)]2H2O (2); the monomer displays high selectivity for Zn2+ and can be used in HEPES buffer (pH 7.4) as a zinc ion selective luminescent probe for biological application. The system shows a nearly 19-fold Zn2+-selective chelation-enhanced fluorescence response in the working buffer. Application of 2 to cultured living cells (B16F10 mouse melanoma and A375 human melanoma) and rat hippocampal slices was also studied by fluorescence microscopy.
- Published
- 2007
37. Attenuated Leishmanial sphingolipid induces apoptosis in A375 human melanoma cell via both caspase-dependent and -independent pathways
- Author
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Koushik Dhara, Suman K. Singh, Ranjan Bhadra, Jagnyeswar Ratha, Krishna Das Saha, and Kajal Nayan Majumdar
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p38 mitogen-activated protein kinases ,Clinical Biochemistry ,Apoptosis ,Mitochondrion ,p38 Mitogen-Activated Protein Kinases ,Tumor Cells, Cultured ,Animals ,Humans ,Molecular Biology ,Melanoma ,Caspase ,Leishmania ,Sphingolipids ,biology ,Dose-Response Relationship, Drug ,Kinase ,Cytochrome c ,JNK Mitogen-Activated Protein Kinases ,Cell Biology ,General Medicine ,Sphingolipid ,Cell biology ,Mitochondria ,Caspases ,biology.protein ,Apoptosis-inducing factor ,Reactive Oxygen Species ,Signal Transduction - Abstract
A fraction of attenuated Leishmanial lipid (ALL) rich in sphingolipids, previously shown to have apoptosis inducing activity in mouse melanoma (B16F10) and human melanoma (A375) cells, was resolved to isolate the bioactive sphingolipid. The mechanism of apoptosis induction by this bioactive attenuated Leishmanial sphingolipid (ALSL) was studied in A375 cells. Apoptosis induced by ALSL in A375 cells was found to be dose and time-dependent. Exposure of cells to ALSL resulted in a rapid increase in reactive oxygen species generation. Pretreatment of cells with the antioxidant N-acetyl-cystein reduced ROS generation and attenuated apoptosis induced by ALSL. Again, ALSL sensitization resulted in the activation of caspase-3 and -9 but not caspase-8. However, inhibitors of these caspases could not protect the cells completely from ALSL-induced apoptosis. N-acetyl-cystein pretreatment was again found to attenuate the activation of caspase-3 and -9. ALSL treatment also resulted in the alteration of mitochondrial membrane potential, and release of pro-apoptotic factors such as cytochrome c and apoptosis inducing factor (AIF) from mitochondria. Furthermore, c-Jun N-terminal kinase was activated that resulted in apoptosis of A375 cells, whereas p38 MAPK was activated to counteract the stress generated in cells in response to ALSL treatment. Taken together, our results indicate that ALSL-induced apoptosis of A375 cells is mediated by both mitochondrial caspase-dependent and -independent pathways and it involves ROS and JNK activation in the mitogen-activated protein kinase cascade.
- Published
- 2007
38. 1C1424 Fluorescent Probe for the Direct Detection of Histone Deacetylase Activity(Proteins: Measurement, Analysis, Engineering,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)
- Author
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Reisuke Baba, Koushik Dhara, Kazuya Kikuchi, and Yuichiro Hori
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Presentation ,media_common.quotation_subject ,Histone deacetylase activity ,Computational biology ,Biology ,Molecular biology ,media_common - Published
- 2012
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39. Back matter
- Author
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Elizabeth Hillard, Lidong Cao, Carmela Bonaccorso, Daniele Leonori, PABITRA CHATTOPADHYAY, Bradley Ashburn, Vojtěch Kubíček, Celia Bonnet, Jing Li, Scott Dalgarno, Oliver Reiser, Rute Fernandes, Yoshihiro Kubota, Dai-Bin Kuang, Daniel Scherman, Steven Nolan, Christina Chai, Koushik Dhara, Radha Kishan Motkuri, Sitaram Velaga, and Antonios Kanaras
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chemistry.chemical_classification ,chemistry ,Condensation ,Materials Chemistry ,Metals and Alloys ,Ceramics and Composites ,General Chemistry ,Medicinal chemistry ,Catalysis ,Alkyl ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Published
- 2010
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40. A new water–soluble copper(ii) complex as a selective fluorescent sensor for azide ion
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Koushik Dhara, Sandipan Sarkar, Pabitra Chattopadhyay, Mario Manassero, Uday Chand Saha, and Abhijit Dan
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Models, Molecular ,Azides ,Molecular Conformation ,chemistry.chemical_element ,Photochemistry ,Mass spectrometry ,Catalysis ,Ion ,chemistry.chemical_compound ,Coordination Complexes ,Organometallic Compounds ,Materials Chemistry ,Solubility ,Fluorescent Dyes ,Temperature ,Metals and Alloys ,Water ,General Chemistry ,Fluorescence ,Copper ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Solutions ,Spectrometry, Fluorescence ,Water soluble ,chemistry ,Excited state ,Ceramics and Composites ,Azide - Abstract
{[Cu(2)(H(2)L)(OH)(H(2)O)].(ClO(4))(2)(H(2)O)} (1) serves as a selective azide ion fluorescent sensor in aqueous medium. 1 binds with N(3)(-) to give [Cu(6)(HL)(2)(mu(1,1)-N(3))(6)] (2) which imposes rigidity and decreases the non-radiative decay of the excited state to give rise to fluorescent enhancement. 1 is highly selective over other various anions in aqueous medium.
- Published
- 2010
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41. Crystal engineering of zinc(II) metal–organic frameworks: role of steric bulk and angular disposition of coordinating sites of the ligands
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Koushik Dhara, Raju Mondal, and Manas K. Bhunia
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Stereochemistry ,Hydrogen bond ,Ligand ,Coordination number ,Tetrahedral molecular geometry ,General Chemistry ,Condensed Matter Physics ,Crystal engineering ,Isophthalic acid ,chemistry.chemical_compound ,Crystallography ,chemistry ,General Materials Science ,Metal-organic framework ,Trimesic acid - Abstract
Three novel 2D and 3D coordination polymers, [Zn(TPA)(H2MDP)]n (1), [Zn(IPA)(H2MDP)]n (2) and [Zn(HTMA)(H2MDP)]n (3) (H2MDP = methylenebis(3,5-dimethylpyrazole), H2TPA = terephthalic acid, H2IPA = isophthalic acid and H3TMA = trimesic acid), have been synthesized under hydrothermal conditions and structurally characterized by single crystal X-ray diffraction. For all three structures, the zinc atoms show a coordination number of four and adopt tetrahedral geometry, and subsequently form a diamondoid, a (2,4) and a (4,4) network. The employment of sterically hindered H2MDP ligand, on the other hand, successfully prohibits interpenetration among the 2D grids. The complex 1 features a metal–organic framework exhibiting a three-fold interpenetrated diamondoid network with linear dicarboxylate ligand (H2TPA) as an auxiliary ligand. The bent dicarboxylate ligands (H2IPA and H3TMA), on the other hand, lead to 2D non interpenetrative grid networks for 2 and 3. A comparative study of 2 and 3 underpins the importance of the hydrogen bond and π–π interaction in the synthesis of coordination polymers.
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- 2008
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42. A New Half-Condensed Schiff Base Compound: Highly Selective and Sensitive pH-Responsive Fluorescent Sensor.
- Author
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Uday Chand Saha, Koushik Dhara, Basab Chattopadhyay, Sushil Kumar Mandal, Swastik Mondal, Supriti Sen, Monika Mukherjee, Sander van Smaalen, and Pabitra Chattopadhyay
- Subjects
- *
SCHIFF bases , *HYDROGEN-ion concentration , *FLUORESCENCE , *DETECTORS , *BUFFER solutions , *ORGANELLES - Abstract
A new probe, 3-[(3-benzyloxypyridin-2-ylimino)methyl]-2-hydroxy-5-methylbenzaldehyde (1-H) behaves as a highly selective fluorescent pH sensor in a Britton–Robinson buffer at 25 °C. The pH titrations show a 250-fold increase in fluorescence intensity within the pH range of 4.2 to 8.3 with a pKavalue of 6.63 which is valuable for studying many of the biological organelles. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
43. Crystal engineering of zinc(II) metal–organic frameworks: role of steric bulk and angular disposition of coordinating sites of the ligands.
- Author
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Raju Mondal, Manas Kumar Bhunia, and Koushik Dhara
- Subjects
COORDINATION compounds ,CRYSTALLINE polymers ,ZINC compounds ,X-ray diffraction ,TETRAHEDRAL coordinates ,STERIC hindrance ,COMPLEX compounds synthesis ,HYDROGEN bonding - Abstract
Three novel 2D and 3D coordination polymers, [Zn(TPA)(H2MDP)]n (1), [Zn(IPA)(H2MDP)]n (2) and [Zn(HTMA)(H2MDP)]n (3) (H2MDP = methylenebis(3,5-dimethylpyrazole), H2TPA = terephthalic acid, H2IPA = isophthalic acid and H3TMA = trimesic acid), have been synthesized under hydrothermal conditions and structurally characterized by single crystal X-ray diffraction. For all three structures, the zinc atoms show a coordination number of four and adopt tetrahedral geometry, and subsequently form a diamondoid, a (2,4) and a (4,4) network. The employment of sterically hindered H2MDP ligand, on the other hand, successfully prohibits interpenetration among the 2D grids. The complex 1 features a metal–organic framework exhibiting a three-fold interpenetrated diamondoid network with linear dicarboxylate ligand (H2TPA) as an auxiliary ligand. The bent dicarboxylate ligands (H2IPA and H3TMA), on the other hand, lead to 2D non interpenetrative grid networks for 2 and 3. A comparative study of 2 and 3 underpins the importance of the hydrogen bond and π–π interaction in the synthesis of coordination polymers. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
44. Nanowires of Metal−Organic Complex by Photocrystallization: A System To Achieve Addressable Electrically Bistable Devices and Memory Elements.
- Author
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Arup K. Rath, Koushik Dhara, Pradyot Banerjee, and Amlan J. Pal
- Published
- 2008
- Full Text
- View/download PDF
45. Attenuated Leishmanial sphingolipid induces apoptosis in A375 human melanoma cell via both caspase-dependent and -independent pathways.
- Author
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Jagnyeswar Ratha, Kajal Majumdar, Koushik Dhara, Suman Singh, Krishna Saha, and Ranjan Bhadra
- Abstract
Abstract A fraction of attenuated Leishmanial lipid (ALL) rich in sphingolipids, previously shown to have apoptosis inducing activity in mouse melanoma (B16F10) and human melanoma (A375) cells, was resolved to isolate the bioactive sphingolipid. The mechanism of apoptosis induction by this bioactive attenuated Leishmanial sphingolipid (ALSL) was studied in A375 cells. Apoptosis induced by ALSL in A375 cells was found to be dose and time-dependent. Exposure of cells to ALSL resulted in a rapid increase in reactive oxygen species generation. Pretreatment of cells with the antioxidant N-acetyl-cystein reduced ROS generation and attenuated apoptosis induced by ALSL. Again, ALSL sensitization resulted in the activation of caspase-3 and -9 but not caspase-8. However, inhibitors of these caspases could not protect the cells completely from ALSL-induced apoptosis. N-acetyl-cystein pretreatment was again found to attenuate the activation of caspase-3 and -9. ALSL treatment also resulted in the alteration of mitochondrial membrane potential, and release of pro-apoptotic factors such as cytochrome c and apoptosis inducing factor (AIF) from mitochondria. Furthermore, c-Jun N-terminal kinase was activated that resulted in apoptosis of A375 cells, whereas p38 MAPK was activated to counteract the stress generated in cells in response to ALSL treatment. Taken together, our results indicate that ALSL-induced apoptosis of A375 cells is mediated by both mitochondrial caspase-dependent and -independent pathways and it involves ROS and JNK activation in the mitogen-activated protein kinase cascade. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
46. Supramolecular Architecture in an Oxovanadium(V)-Schiff Base Complex: Synthesis, Ab initio Structure Determination from X-ray Powder Diffraction, DNA Binding and Cleavage Activity.
- Author
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Swastik Mondal, Monika Mukherjee, Koushik Dhara, Soumen Ghosh, Jagnyeswar Ratha, Pradyot Banerjee, and Alok K. Mukherjee
- Published
- 2007
- Full Text
- View/download PDF
47. Synthesis and crystal structure of an iron(II) dimeric complex
- Author
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Roy, P., Koushik Dhara, Chakraborty, J., Nethajib, M., and Banerjee, P.
- Subjects
Inorganic & Physical Chemistry - Abstract
An iron(II) complex, $[Fe_2(salen)_2]$ has been prepared by the reaction of $[Fe^{III}(salen)Cl]$ with copper(II) malonate dihydrate [salen = N,N'-ethylenebis(salicylideneiminato) dianion] in N,N-dimethylformamide-water mixture. The complex has been characterized by FT-IR spectroscopy, UV-vis spectra, thermogravimetric analysis, cyclic voltammetry and X-ray crystallography. The iron(II) complex 1 crystallizes in the monoclinic, space group C2/c, a = 26.664(5) \AA, b = 6.9943(11) \AA, c = 14.727(2) \AA, $\beta = 97.498(3)^o$, and Z = 8. The structural study reveals that it is a penta-coordinate Fe(II) dimeric complex.
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