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1. Title Page, Copyright

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

2. Contents

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

3. Note from the Editor

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

4. 1. Why Both Feed the Line and Reduce the Line?

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

5. 2. A Refuge in the City

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

6. Introduction: Where Do We Come From? What Are We? Where Are We Going?

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

8. 4. Standing Up to the Super Polluters

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

9. 5. Making Your Garden Native and Natural

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

10. 7. Sister Joanna's House of Bread and Peace

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

11. 8. Creating Community

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

12. 6. A Community of Gardeners

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

13. 9. Friends and Neighbors: Photographs from the Open Door Community

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

14. 11. Books to Open Young Minds: For Preschool through Middle School

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

15. 10. Advocating for Children

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

16. 12. The Sweet Spot of Climate Action

Author

Poyser, Jim, Jordan, Kamela, Carr, Sally, Mans, Yvonne, Brown, Trisha, Kimbrough, Jr., R. Calvin, Rich, Amy, Pope, Jes, Hemminger, William, Stratman, Anna Jean, Hochwender, Cris G., Bredhold, Wendy, Kramer, Kyle, Dewig, Shelley, and Elliott, John A.

Published
2021

17. Physiological Adaptations to Progressive Endurance Exercise Training in Adult and Aged Rats: Insights from the Molecular Transducers of Physical Activity Consortium (MoTrPAC)

Author

Schenk, Simon, Sagendorf, Tyler J, Many, Gina M, Lira, Ana K, de Sousa, Luis GO, Bae, Dam, Cicha, Michael, Kramer, Kyle S, Muehlbauer, Michael, Hevener, Andrea L, Rector, R Scott, Thyfault, John P, Williams, John P, Goodyear, Laurie J, Esser, Karyn A, Newgard, Christopher B, Bodine, Sue C, Adkins, Joshua N, Albertson, Brent G, Amar, David, Amper, Mary Anne S, Ashley, Euan, Bamman, Marcas M, Barnes, Jerry, Bergman, Bryan C, Bessesen, Daniel H, Buford, Thomas W, Burant, Charles F, Cutter, Gary R, De Sousa, Luis Gustavo Oliveria, Fernández, Facundo M, Gaul, David A, Ge, Yongchao, Goodpaster, Bret H, Guevara, Kristy, Hirshman, Michael F, Huffman, Kim M, Jackson, Bailey E, Jankowski, Catherine M, Jimenez-Morales, David, Kohrt, Wendy M, Kraus, William E, Lessard, Sarah J, Lester, Bridget, Lindholm, Malene E, Many, Gina, Marjanovic, Nada, Marshall, Andrea G, Melanson, Edward L, Miller, Michael E, Moreau, Kerrie L, Nair, Venugopalan D, Ortlund, Eric A, Qian, Wei-Jun, Rasmussen, Blake B, Richards, Collyn Z-T, Rushing, Scott, Sanford, James A, Schauer, Irene E, Schwartz, Robert S, Sealfon, Stuart C, Seenarine, Nitish, Sparks, Lauren M, Stowe, Cynthia L, Talton, Jennifer W, Teng, Christopher, Tesfa, Nathan D, Thalacker-Mercer, Anna, Trappe, Scott, Trappe, Todd A, Vasoya, Mital, Wheeler, Matthew T, Walkup, Michael P, Yan, Zhen, and Zhen, Jimmy

Subjects
Biomedical and Clinical Sciences, Clinical Sciences, Prevention, Cardiovascular, Physical Activity, Behavioral and Social Science, Animals, Male, Rats, Inbred F344, Female, Physical Conditioning, Animal, Adaptation, Physiological, Rats, Aging, Physical Endurance, Muscle, Skeletal, Endurance Training, training, treadmill, maximal oxygen uptake, body composition, citrate synthase, skeletal muscle, biorepository, aging, MoTrPAC Study Group, Medical physiology
Abstract

While regular physical activity is a cornerstone of health, wellness, and vitality, the impact of endurance exercise training on molecular signaling within and across tissues remains to be delineated. The Molecular Transducers of Physical Activity Consortium (MoTrPAC) was established to characterize molecular networks underlying the adaptive response to exercise. Here, we describe the endurance exercise training studies undertaken by the Preclinical Animal Sites Studies component of MoTrPAC, in which we sought to develop and implement a standardized endurance exercise protocol in a large cohort of rats. To this end, Adult (6-mo) and Aged (18-mo) female (n = 151) and male (n = 143) Fischer 344 rats were subjected to progressive treadmill training (5 d/wk, ∼70%-75% VO2max) for 1, 2, 4, or 8 wk; sedentary rats were studied as the control group. A total of 18 solid tissues, as well as blood, plasma, and feces, were collected to establish a publicly accessible biorepository and for extensive omics-based analyses by MoTrPAC. Treadmill training was highly effective, with robust improvements in skeletal muscle citrate synthase activity in as little as 1-2 wk and improvements in maximum run speed and maximal oxygen uptake by 4-8 wk. For body mass and composition, notable age- and sex-dependent responses were observed. This work in mature, treadmill-trained rats represents the most comprehensive and publicly accessible tissue biorepository, to date, and provides an unprecedented resource for studying temporal-, sex-, and age-specific responses to endurance exercise training in a preclinical rat model.

Published
2024

18. Temporal dynamics of the multi-omic response to endurance exercise training

Author

Bae, Dam, Dasari, Surendra, Dennis, Courtney, Evans, Charles R, Gaul, David A, Ilkayeva, Olga, Ivanova, Anna A, Kachman, Maureen T, Keshishian, Hasmik, Lanza, Ian R, Lira, Ana C, Muehlbauer, Michael J, Nair, Venugopalan D, Piehowski, Paul D, Rooney, Jessica L, Smith, Kevin S, Stowe, Cynthia L, Zhao, Bingqing, Clark, Natalie M, Jimenez-Morales, David, Lindholm, Malene E, Many, Gina M, Sanford, James A, Smith, Gregory R, Vetr, Nikolai G, Zhang, Tiantian, Almagro Armenteros, Jose J, Avila-Pacheco, Julian, Bararpour, Nasim, Ge, Yongchao, Hou, Zhenxin, Marwaha, Shruti, Presby, David M, Natarajan Raja, Archana, Savage, Evan M, Steep, Alec, Sun, Yifei, Wu, Si, Zhen, Jimmy, Bodine, Sue C, Esser, Karyn A, Goodyear, Laurie J, Schenk, Simon, Montgomery, Stephen B, Fernández, Facundo M, Sealfon, Stuart C, Snyder, Michael P, Adkins, Joshua N, Ashley, Euan, Burant, Charles F, Carr, Steven A, Clish, Clary B, Cutter, Gary, Gerszten, Robert E, Kraus, William E, Li, Jun Z, Miller, Michael E, Nair, K Sreekumaran, Newgard, Christopher, Ortlund, Eric A, Qian, Wei-Jun, Tracy, Russell, Walsh, Martin J, Wheeler, Matthew T, Dalton, Karen P, Hastie, Trevor, Hershman, Steven G, Samdarshi, Mihir, Teng, Christopher, Tibshirani, Rob, Cornell, Elaine, Gagne, Nicole, May, Sandy, Bouverat, Brian, Leeuwenburgh, Christiaan, Lu, Ching-ju, Pahor, Marco, Hsu, Fang-Chi, Rushing, Scott, Walkup, Michael P, Nicklas, Barbara, Rejeski, W Jack, Williams, John P, Xia, Ashley, Albertson, Brent G, Barton, Elisabeth R, Booth, Frank W, Caputo, Tiziana, Cicha, Michael, De Sousa, Luis Gustavo Oliveira, Farrar, Roger, Hevener, Andrea L, Hirshman, Michael F, Jackson, Bailey E, Ke, Benjamin G, Kramer, Kyle S, Lessard, Sarah J, Makarewicz, Nathan S, Marshall, Andrea G, and Nigro, Pasquale

Subjects
Health Sciences, Sports Science and Exercise, Genetics, Prevention, Human Genome, Cardiovascular, Physical Activity, Behavioral and Social Science, 2.1 Biological and endogenous factors, 1.1 Normal biological development and functioning, Inflammatory and immune system, Generic health relevance, Good Health and Well Being, Animals, Female, Humans, Male, Rats, Acetylation, Blood, Cardiovascular Diseases, Databases, Factual, Endurance Training, Epigenome, Inflammatory Bowel Diseases, Internet, Lipidomics, Metabolome, Mitochondria, Multiomics, Non-alcoholic Fatty Liver Disease, Organ Specificity, Phosphorylation, Physical Conditioning, Animal, Physical Endurance, Proteome, Proteomics, Time Factors, Transcriptome, Ubiquitination, Wounds and Injuries, MoTrPAC Study Group, Lead Analysts, MoTrPAC Study Group, General Science & Technology
Abstract

Regular exercise promotes whole-body health and prevents disease, but the underlying molecular mechanisms are incompletely understood1-3. Here, the Molecular Transducers of Physical Activity Consortium4 profiled the temporal transcriptome, proteome, metabolome, lipidome, phosphoproteome, acetylproteome, ubiquitylproteome, epigenome and immunome in whole blood, plasma and 18 solid tissues in male and female Rattus norvegicus over eight weeks of endurance exercise training. The resulting data compendium encompasses 9,466 assays across 19 tissues, 25 molecular platforms and 4 training time points. Thousands of shared and tissue-specific molecular alterations were identified, with sex differences found in multiple tissues. Temporal multi-omic and multi-tissue analyses revealed expansive biological insights into the adaptive responses to endurance training, including widespread regulation of immune, metabolic, stress response and mitochondrial pathways. Many changes were relevant to human health, including non-alcoholic fatty liver disease, inflammatory bowel disease, cardiovascular health and tissue injury and recovery. The data and analyses presented in this study will serve as valuable resources for understanding and exploring the multi-tissue molecular effects of endurance training and are provided in a public repository ( https://motrpac-data.org/ ).

Published
2024

20. Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures

Author

Adkins, Joshua N., Almagro Armenteros, Jose Juan, Ashley, Euan, Bae, Dam, Bamman, Marcas, Bararpour, Nasim, Bennett, Alexis, Bergman, Bryan C., Bessesen, Daniel H., Bodine, Sue C., Buford, Thomas W., Chambers, Toby L., Chavez, Clarisa, Cortes, Tiffany, Cutter, Gary, Espinoza, Sara, Fernández, Facundo M., Gagne, Nicole, Gaul, David A., Goodpaster, Bret H., Hung, Chia-Jui, Jackson, Bailey E., Jankowski, Catherine M., Jin, Christopher A., Kohrt, Wendy M., Kramer, Kyle S., Lester, Bridget, Lira, Ana K., May, Sandy, Marjanovic, Nada, Melanson, Edward L., Moore, Samuel G., Moreau, Kerrie L., Musi, Nicolas, Nachum, Daniel, Nudelman, German, Pahor, Marco, Patel, Darpan, Piehowski, Paul D., Qian, Wei-Jun, Rasmussen, Blake B., Rirak, Stas, Rooney, Jessica L., Sanford, James A., Savage, Evan M., Schauer, Irene E., Serra, Monica, Stowe, Cynthia L., Thalacker-Mercer, Anna, Trappe, Todd A., Trappe, Scott, Vetr, Nikolai G., Volpi, Elena, Wheeler, Matthew T., Wu, Si, Zebarjadi, Navid, Zhen, Jimmy, Nair, Venugopalan D., Pincas, Hanna, Smith, Gregory R., Zaslavsky, Elena, Ge, Yongchao, Amper, Mary Anne S., Vasoya, Mital, Chikina, Maria, Sun, Yifei, Raja, Archana Natarajan, Mao, Weiguang, Gay, Nicole R., Esser, Karyn A., Smith, Kevin S., Zhao, Bingqing, Wiel, Laurens, Singh, Aditya, Lindholm, Malene E., Amar, David, Montgomery, Stephen, Snyder, Michael P., Walsh, Martin J., and Sealfon, Stuart C.

Published
2024
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21. The mitochondrial multi-omic response to exercise training across rat tissues

Author

Adkins, Joshua N., Armenteros, Jose Juan Almagro, Amper, Mary Anne S., Bae, Dam, Bamman, Marcas, Bararpour, Nasim, Barnes, Jerry, Bergman, Bryan C., Bessesen, Daniel H., Broskey, Nicholas T., Buford, Thomas W., Carr, Steven, Chambers, Toby L., Chavez, Clarisa, Chiu, Roxanne, Clark, Natalie, Cutter, Gary, Evans, Charles R., Franczak, Edziu, Gagne, Nicole, Ge, Yongchao, Hennig, Krista M., Houmard, Joseph A., Huffman, Kim M., Hung, Chia-Jui, Hutchinson-Bunch, Chelsea, Ilkayeva, Olga, Jackson, Bailey E., Jankowski, Catherine M., Jin, Christopher A., Johannsen, Neil M., Katz, Daniel H., Keshishian, Hasmik, Kohrt, Wendy M., Kramer, Kyle S., Kraus, William E., Lester, Bridget, Li, Jun Z., Lira, Ana K., Lowe, Adam, Mani, D.R., Many, Gina M., May, Sandy, Melanson, Edward L., Moore, Samuel G., Moreau, Kerrie L., Musi, Nicolas, Nachun, Daniel, Nair, Venugopalan D., Newgard, Christopher, Nudelman, German, Piehowski, Paul D., Pincas, Hanna, Qian, Wei-Jun, Rankinen, Tuomo, Rasmussen, Blake B., Ravussin, Eric, Rooney, Jessica L., Rushing, Scott, Samdarshi, Mihir, Sanford, James A., Schauer, Irene E., Sealfon, Stuart C., Smith, Kevin S., Smith, Gregory R., Snyder, Michael, Stowe, Cynthia L., Talton, Jennifer W., Teng, Christopher, Thalacker-Mercer, Anna, Tracy, Russell, Trappe, Scott, Trappe, Todd A., Vasoya, Mital, Vetr, Nikolai G., Volpi, Elena, Walkup, Michael P., Wiel, Laurens, Wu, Si, Yan, Zhen, Yu, Jiye, Zaslavsky, Elena, Zebarjadi, Navid, Zhen, Jimmy, Amar, David, Gay, Nicole R., Jimenez-Morales, David, Jean Beltran, Pierre M., Ramaker, Megan E., Raja, Archana Natarajan, Zhao, Bingqing, Sun, Yifei, Marwaha, Shruti, Gaul, David A., Hershman, Steven G., Ferrasse, Alexis, Xia, Ashley, Lanza, Ian, Fernández, Facundo M., Montgomery, Stephen B., Hevener, Andrea L., Ashley, Euan A., Walsh, Martin J., Sparks, Lauren M., Burant, Charles F., Rector, R. Scott, Thyfault, John, Wheeler, Matthew T., Goodpaster, Bret H., Coen, Paul M., Schenk, Simon, Bodine, Sue C., and Lindholm, Malene E.

Published
2024
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23. Outpatient Anesthesia

Author

Bennett, Jeffrey, Butterfield, Kevin, Kramer, Kyle J., Miloro, Michael, editor, Ghali, G. E., editor, Larsen, Peter E., editor, and Waite, Peter, editor

Published
2022
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25. Overview of Local Anesthesia

Author

Kramer, Kyle J., Riley, Cara J., Brady, Jason W., Ferneini, Elie M., editor, Goupil, Michael T., editor, McNulty, Margaret A., editor, and Niekrash, Christine E., editor

Published
2021
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49. Trophoblast Interferons

Author

Roberts, R. Michael, Cross, James C., Farin, Charlotte E., Farin, Peter W., Kramer, Kyle K., Francis, Harriet, Librach, Clifford, Fisher, Susan J., and Schomberg, David W., editor

Published
1991
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