98 results on '"Kristin, Tessmar-Raible"'
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2. A Cryptochrome adopts distinct moon- and sunlight states and functions as sun- versus moonlight interpreter in monthly oscillator entrainment
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Birgit Poehn, Shruthi Krishnan, Martin Zurl, Aida Coric, Dunja Rokvic, N. Sören Häfker, Elmar Jaenicke, Enrique Arboleda, Lukas Orel, Florian Raible, Eva Wolf, and Kristin Tessmar-Raible
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Science - Abstract
Reproduction in numerous marine organisms is timed to specific moon phases, but the mechanisms for sensing moon phases are incompletely understood. Here the authors report that an ancient, light-sensitive protein L-Cryptochrome in a marine bristle worm can discriminate between sun- and moonlight, enabling the animals to properly decode moon phases.
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- 2022
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3. The Nereid on the rise: Platynereis as a model system
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B. Duygu Özpolat, Nadine Randel, Elizabeth A. Williams, Luis Alberto Bezares-Calderón, Gabriele Andreatta, Guillaume Balavoine, Paola Y. Bertucci, David E. K. Ferrier, Maria Cristina Gambi, Eve Gazave, Mette Handberg-Thorsager, Jörg Hardege, Cameron Hird, Yu-Wen Hsieh, Jerome Hui, Kevin Nzumbi Mutemi, Stephan Q. Schneider, Oleg Simakov, Hernando M. Vergara, Michel Vervoort, Gáspár Jékely, Kristin Tessmar-Raible, Florian Raible, and Detlev Arendt
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Annelida ,Spiralia ,Marine model species ,Evo-devo ,Integrative biology ,Evolution ,QH359-425 - Abstract
Abstract The Nereid Platynereis dumerilii (Audouin and Milne Edwards (Annales des Sciences Naturelles 1:195–269, 1833) is a marine annelid that belongs to the Nereididae, a family of errant polychaete worms. The Nereid shows a pelago-benthic life cycle: as a general characteristic for the superphylum of Lophotrochozoa/Spiralia, it has spirally cleaving embryos developing into swimming trochophore larvae. The larvae then metamorphose into benthic worms living in self-spun tubes on macroalgae. Platynereis is used as a model for genetics, regeneration, reproduction biology, development, evolution, chronobiology, neurobiology, ecology, ecotoxicology, and most recently also for connectomics and single-cell genomics. Research on the Nereid started with studies on eye development and spiralian embryogenesis in the nineteenth and early twentieth centuries. Transitioning into the molecular era, Platynereis research focused on posterior growth and regeneration, neuroendocrinology, circadian and lunar cycles, fertilization, and oocyte maturation. Other work covered segmentation, photoreceptors and other sensory cells, nephridia, and population dynamics. Most recently, the unique advantages of the Nereid young worm for whole-body volume electron microscopy and single-cell sequencing became apparent, enabling the tracing of all neurons in its rope-ladder-like central nervous system, and the construction of multimodal cellular atlases. Here, we provide an overview of current topics and methodologies for P. dumerilii, with the aim of stimulating further interest into our unique model and expanding the active and vibrant Platynereis community.
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- 2021
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4. Characterization of tmt-opsin2 in Medaka Fish Provides Insight Into the Interplay of Light and Temperature for Behavioral Regulation
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Theresa Zekoll, Monika Waldherr, and Kristin Tessmar-Raible
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behavior ,non-visual opsins ,temperature ,medaka ,deep learning algorithms ,seasonality ,Physiology ,QP1-981 - Abstract
One of the big challenges in the study of animal behavior is to combine molecular-level questions of functional genetics with meaningful combinations of environmental stimuli. Light and temperature are important external cues, influencing the behaviors of organisms. Thus, understanding the combined effect of light and temperature changes on wild-type vs. genetically modified animals is a first step to understand the role of individual genes in the ability of animals to cope with changing environments. Many behavioral traits can be extrapolated from behavioral tests performed from automated motion tracking combined with machine learning. Acquired datasets, typically complex and large, can be challenging for subsequent quantitative analyses. In this study, we investigate medaka behavior of tmt-opsin2 mutants vs. corresponding wild-types under different light and temperature conditions using automated tracking combined with a convolutional neuronal network and a Hidden Markov model-based approach. The temperatures in this study can occur in summer vs. late spring/early autumn in the natural habitat of medaka fish. Under summer-like temperature, tmt-opsin2 mutants did not exhibit changes in overall locomotion, consistent with previous observations. However, detailed analyses of fish position revealed that the tmt-opsin2 mutants spent more time in central locations of the dish, possibly because of decreased anxiety. Furthermore, a clear difference in location and overall movement was obvious between the mutant and wild-types under colder conditions. These data indicate a role of tmt-opsin2 in behavioral adjustment, at least in part possibly depending on the season.
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- 2021
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5. Characterization of cephalic and non-cephalic sensory cell types provides insight into joint photo- and mechanoreceptor evolution
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Roger Revilla-i-Domingo, Vinoth Babu Veedin Rajan, Monika Waldherr, Günther Prohaczka, Hugo Musset, Lukas Orel, Elliot Gerrard, Moritz Smolka, Alexander Stockinger, Matthias Farlik, Robert J Lucas, Florian Raible, and Kristin Tessmar-Raible
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photoreceptor ,opsin ,evolution ,behavior ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Rhabdomeric opsins (r-opsins) are light sensors in cephalic eye photoreceptors, but also function in additional sensory organs. This has prompted questions on the evolutionary relationship of these cell types, and if ancient r-opsins were non-photosensory. A molecular profiling approach in the marine bristleworm Platynereis dumerilii revealed shared and distinct features of cephalic and non-cephalic r-opsin1-expressing cells. Non-cephalic cells possess a full set of phototransduction components, but also a mechanosensory signature. Prompted by the latter, we investigated Platynereis putative mechanotransducer and found that nompc and pkd2.1 co-expressed with r-opsin1 in TRE cells by HCR RNA-FISH. To further assess the role of r-Opsin1 in these cells, we studied its signaling properties and unraveled that r-Opsin1 is a Gαq-coupled blue light receptor. Profiling of cells from r-opsin1 mutants versus wild-types, and a comparison under different light conditions reveals that in the non-cephalic cells light – mediated by r-Opsin1 – adjusts the expression level of a calcium transporter relevant for auditory mechanosensation in vertebrates. We establish a deep-learning-based quantitative behavioral analysis for animal trunk movements and identify a light– and r-Opsin-1–dependent fine-tuning of the worm's undulatory movements in headless trunks, which are known to require mechanosensory feedback. Our results provide new data on peripheral cell types of likely light sensory/mechanosensory nature. These results point towards a concept in which such a multisensory cell type evolved to allow for fine-tuning of mechanosensation by light. This implies that light-independent mechanosensory roles of r-opsins may have evolved secondarily.
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- 2021
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6. TMT-Opsins differentially modulate medaka brain function in a context-dependent manner.
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Bruno M Fontinha, Theresa Zekoll, Mariam Al-Rawi, Miguel Gallach, Florian Reithofer, Alison J Barker, Maximilian Hofbauer, Ruth M Fischer, Arndt von Haeseler, Herwig Baier, and Kristin Tessmar-Raible
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Biology (General) ,QH301-705.5 - Abstract
Vertebrate behavior is strongly influenced by light. Light receptors, encoded by functional opsin proteins, are present inside the vertebrate brain and peripheral tissues. This expression feature is present from fishes to human and appears to be particularly prominent in diurnal vertebrates. Despite their conserved widespread occurrence, the nonvisual functions of opsins are still largely enigmatic. This is even more apparent when considering the high number of opsins. Teleosts possess around 40 opsin genes, present from young developmental stages to adulthood. Many of these opsins have been shown to function as light receptors. This raises the question of whether this large number might mainly reflect functional redundancy or rather maximally enables teleosts to optimally use the complex light information present under water. We focus on tmt-opsin1b and tmt-opsin2, c-opsins with ancestral-type sequence features, conserved across several vertebrate phyla, expressed with partly similar expression in non-rod, non-cone, non-retinal-ganglion-cell brain tissues and with a similar spectral sensitivity. The characterization of the single mutants revealed age- and light-dependent behavioral changes, as well as an impact on the levels of the preprohormone sst1b and the voltage-gated sodium channel subunit scn12aa. The amount of daytime rest is affected independently of the eyes, pineal organ, and circadian clock in tmt-opsin1b mutants. We further focused on daytime behavior and the molecular changes in tmt-opsin1b/2 double mutants, and found that-despite their similar expression and spectral features-these opsins interact in part nonadditively. Specifically, double mutants complement molecular and behavioral phenotypes observed in single mutants in a partly age-dependent fashion. Our work provides a starting point to disentangle the highly complex interactions of vertebrate nonvisual opsins, suggesting that tmt-opsin-expressing cells together with other visual and nonvisual opsins provide detailed light information to the organism for behavioral fine-tuning. This work also provides a stepping stone to unravel how vertebrate species with conserved opsins, but living in different ecological niches, respond to similar light cues and how human-generated artificial light might impact on behavioral processes in natural environments.
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- 2021
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7. Parents in science
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Emily Perry, Kristin Tessmar-Raible, and Florian Raible
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Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Abstract
Abstract As part of our Q&A series, Genome Biology spoke to four scientists about their personal experiences as parents in their careers to highlight the challenges of researchers having children and the support they need in this regard. Our participants also included a couple (Kristin Tessmar-Raible and Florian Raible), as we were interested to know whether both parents being active researchers can have an impact. One of our participants wishes to remain anonymous.
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- 2018
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8. A Go-type opsin mediates the shadow reflex in the annelid Platynereis dumerilii
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Thomas Ayers, Hisao Tsukamoto, Martin Gühmann, Vinoth Babu Veedin Rajan, and Kristin Tessmar-Raible
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behaviour ,opsins ,non-visual ,marine ,Platynereis dumerilii ,annelid ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background The presence of photoreceptive molecules outside the eye is widespread among animals, yet their functions in the periphery are less well understood. Marine organisms, such as annelid worms, exhibit a ‘shadow reflex’, a defensive withdrawal behaviour triggered by a decrease in illumination. Herein, we examine the cellular and molecular underpinnings of this response, identifying a role for a photoreceptor molecule of the Go-opsin class in the shadow response of the marine bristle worm Platynereis dumerilii. Results We found Pdu-Go-opsin1 expression in single specialised cells located in adult Platynereis head and trunk appendages, known as cirri. Using gene knock-out technology and ablation approaches, we show that the presence of Go-opsin1 and the cirri is necessary for the shadow reflex. Consistently, quantification of the shadow reflex reveals a chromatic dependence upon light of approximately 500 nm in wavelength, matching the photoexcitation characteristics of the Platynereis Go-opsin1. However, the loss of Go-opsin1 does not abolish the shadow reflex completely, suggesting the existence of a compensatory mechanism, possibly acting through a ciliary-type opsin, Pdu-c-opsin2, with a Lambdamax of approximately 490 nm. Conclusions We show that a Go-opsin is necessary for the shadow reflex in a marine annelid, describing a functional example for a peripherally expressed photoreceptor, and suggesting that, in different species, distinct opsins contribute to varying degrees to the shadow reflex.
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- 2018
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9. Differential Impacts of the Head on Platynereis dumerilii Peripheral Circadian Rhythms
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Enrique Arboleda, Martin Zurl, Monika Waldherr, and Kristin Tessmar-Raible
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marine ,annelid ,daily ,rhythm ,clock ,chromatophores ,Physiology ,QP1-981 - Abstract
The marine bristle worm Platynereis dumerilii is a useful functional model system for the study of the circadian clock and its interplay with others, e.g., circalunar clocks. The focus has so far been on the worm’s head. However, behavioral and physiological cycles in other animals typically arise from the coordination of circadian clocks located in the brain and in peripheral tissues. Here, we focus on peripheral circadian rhythms and clocks, revisit and expand classical circadian work on the worm’s chromatophores, investigate locomotion as read-out and include molecular analyses. We establish that different pieces of the trunk exhibit synchronized, robust oscillations of core circadian clock genes. These circadian core clock transcripts are under strong control of the light-dark cycle, quickly losing synchronized oscillation under constant darkness, irrespective of the absence or presence of heads. Different wavelengths are differently effective in controlling the peripheral molecular synchronization. We have previously shown that locomotor activity is under circadian clock control. Here, we show that upon decapitation worms exhibit strongly reduced activity levels. While still following the light-dark cycle, locomotor rhythmicity under constant darkness is less clear. We also observe the rhythmicity of pigments in the worm’s individual chromatophores, confirming their circadian pattern. These size changes continue under constant darkness, but cannot be re-entrained by light upon decapitation. Our works thus provides the first basic characterization of the peripheral circadian clock of P. dumerilii. In the absence of the head, light is essential as a major synchronization cue for peripheral molecular and locomotor circadian rhythms, while circadian changes in chromatophore size can continue for several days in the absence of light/dark changes and the head. Thus, in Platynereis the dependence on the head depends on the type of peripheral rhythm studied. These data show that peripheral circadian rhythms and clocks should also be considered in “non-conventional” molecular model systems, i.e., outside Drosophila melanogaster, Danio rerio, and Mus musculus, and build a basic foundation for future investigations of interactions of clocks with different period lengths in marine organisms.
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- 2019
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10. Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase
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Sven Schenk, Stephanie C Bannister, Fritz J Sedlazeck, Dorothea Anrather, Bui Quang Minh, Andrea Bileck, Markus Hartl, Arndt von Haeseler, Christopher Gerner, Florian Raible, and Kristin Tessmar-Raible
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marine biology ,chronobiology ,development ,sexual differentiation ,proteomics ,transcriptomics ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Many marine animals, ranging from corals to fishes, synchronise reproduction to lunar cycles. In the annelid Platynereis dumerilii, this timing is orchestrated by an endogenous monthly (circalunar) clock entrained by moonlight. Whereas daily (circadian) clocks cause extensive transcriptomic and proteomic changes, the quality and quantity of regulations by circalunar clocks have remained largely elusive. By establishing a combined transcriptomic and proteomic profiling approach, we provide first systematic insight into the molecular changes in Platynereis heads between circalunar phases, and across sexual differentiation and maturation. Whereas maturation elicits large transcriptomic and proteomic changes, the circalunar clock exhibits only minor transcriptomic, but strong proteomic regulation. Our study provides a versatile extraction technique and comprehensive resources. It corroborates that circadian and circalunar clock effects are likely distinct and identifies key molecular brain signatures for reproduction, sex and circalunar clock phase. Examples include prepro-whitnin/proctolin and ependymin-related proteins as circalunar clock targets.
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- 2019
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11. Biological rhythms: Hormones under moon control
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Gabriele Andreatta, Florian Raible, and Kristin Tessmar-Raible
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Male ,Periodicity ,Gene Expression Regulation ,Fishes ,Animals ,Female ,Moon ,Gonads ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology - Abstract
Grass puffers are fish that engage in mass spawning controlled by the phase of the moon. A new study shows that prostaglandins released by males and females fine tune these events. In addition, regulation of gnrh1 by a transcription factor expressed in a semilunar rhythm suggests a timing signal for the long-term coordination of gonadal maturation.
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- 2022
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12. A Fast And Versatile Method for Simultaneous HCR, Immunohistochemistry And Edu Labeling (SHInE)
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Aida Ćorić, Alexander W Stockinger, Petra Schaffer, Dunja Rokvić, Kristin Tessmar-Raible, and Florian Raible
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Animal Science and Zoology ,Plant Science - Abstract
Access to newer, fast and cheap sequencing techniques, particularly on the single-cell level, have made transcriptomic data of tissues or single cells accessible to many researchers. As a consequence, there is increased need forin situvisualization of gene expression or encoded proteins to validate, localize or help interpret such sequencing data, as well as put them in context with cellular proliferation. A particular challenge for labeling and imaging transcripts are complex tissues that are often opaque and/or pigmented, preventing easy visual inspection. Here we introduce a versatile protocol that combinesin situhybridization chain reaction (HCR), immunohistochemistry (IHC) and proliferative cell labeling using 5-ethynyl-2’-deoxyuridine (EdU), and demonstrate its compatibility with tissue clearing. As a proof-of-concept, we show that our protocol allows for the parallel analysis of cell proliferation, gene expression and protein localization in bristleworm heads and trunks.
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- 2023
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13. Ciliary and rhabdomeric photoreceptor-cell circuits form a spectral depth gauge in marine zooplankton
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Csaba Verasztó, Martin Gühmann, Huiyong Jia, Vinoth Babu Veedin Rajan, Luis A Bezares-Calderón, Cristina Piñeiro-Lopez, Nadine Randel, Réza Shahidi, Nico K Michiels, Shozo Yokoyama, Kristin Tessmar-Raible, and Gáspár Jékely
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opsin ,ciliary photoreceptor ,rhabdomeric photoreceptor ,zooplankton ,UV avoidance ,phototaxis ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Ciliary and rhabdomeric photoreceptor cells represent two main lines of photoreceptor-cell evolution in animals. The two cell types coexist in some animals, however how these cells functionally integrate is unknown. We used connectomics to map synaptic paths between ciliary and rhabdomeric photoreceptors in the planktonic larva of the annelid Platynereis and found that ciliary photoreceptors are presynaptic to the rhabdomeric circuit. The behaviors mediated by the ciliary and rhabdomeric cells also interact hierarchically. The ciliary photoreceptors are UV-sensitive and mediate downward swimming in non-directional UV light, a behavior absent in ciliary-opsin knockout larvae. UV avoidance overrides positive phototaxis mediated by the rhabdomeric eyes such that vertical swimming direction is determined by the ratio of blue/UV light. Since this ratio increases with depth, Platynereis larvae may use it as a depth gauge during vertical migration. Our results revealed a functional integration of ciliary and rhabdomeric photoreceptor cells in a zooplankton larva.
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- 2018
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14. Rhythms and Clocks in Marine Organisms
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N. Sören Häfker, Gabriele Andreatta, Alessandro Manzotti, Angela Falciatore, Florian Raible, and Kristin Tessmar-Raible
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Oceanography - Abstract
The regular movements of waves and tides are obvious representations of the oceans' rhythmicity. But the rhythms of marine life span across ecological niches and timescales, including short (in the range of hours) and long (in the range of days and months) periods. These rhythms regulate the physiology and behavior of individuals, as well as their interactions with each other and with the environment. This review highlights examples of rhythmicity in marine animals and algae that represent important groups of marine life across different habitats. The examples cover ecologically highly relevant species and a growing number of laboratory model systems that are used to disentangle key mechanistic principles. The review introduces fundamental concepts of chronobiology, such as the distinction between rhythmic and endogenous oscillator-driven processes. It also addresses the relevance of studying diverse rhythms and oscillators, as well as their interconnection, for making better predictions of how species will respond to environmental perturbations, including climate change. As the review aims to address scientists from the diverse fields of marine biology, ecology, and molecular chronobiology, all of which have their own scientific terms, we provide definitions of key terms throughout the article. Expected final online publication date for the
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- 2023
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15. An Overview of Monthly Rhythms and Clocks
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Florian Raible, Hiroki Takekata, and Kristin Tessmar-Raible
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circalunar ,circadian ,moon ,light ,sleep ,mood ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Organisms have evolved to cope with geophysical cycles of different period lengths. In this review, we focus on the adaptations of animals to the lunar cycle, specifically, on the occurrence of biological rhythms with monthly (circalunar) or semi-monthly (circasemilunar) period lengths. Systematic experimental investigation, starting in the early twentieth century, has allowed scientists to distinguish between mythological belief and scientific facts concerning the influence of the lunar cycle on animals. These studies revealed that marine animals of various taxa exhibit circalunar or circasemilunar reproductive rhythms. Some of these rely on endogenous oscillators (circalunar or circasemilunar clocks), whereas others are directly driven by external cues, such as the changes in nocturnal illuminance. We review current insight in the molecular and cellular mechanisms involved in circalunar rhythms, focusing on recent work in corals, annelid worms, midges, and fishes. In several of these model systems, the transcript levels of some core circadian clock genes are affected by both light and endogenous circalunar oscillations. How these and other molecular changes relate to the changes in physiology or behavior over the lunar cycle remains to be determined. We further review the possible relevance of circalunar rhythms for terrestrial species, with a particular focus on mammalian reproduction. Studies on circalunar rhythms of conception or birth rates extend to humans, where the lunar cycle was suggested to also affect sleep and mental health. While these reports remain controversial, factors like the increase in “light pollution” by artificial light might contribute to discrepancies between studies. We finally discuss the existence of circalunar oscillations in mammalian physiology. We speculate that these oscillations could be the remnant of ancient circalunar oscillators that were secondarily uncoupled from a natural entrainment mechanism, but still maintained relevance for structuring the timing of reproduction or physiology. The analysis and comparison of circalunar rhythms and clocks are currently challenging due to the heterogeneity of samples concerning species diversity, environmental conditions, and chronobiological conditions. We suggest that future research will benefit from the development of standardized experimental paradigms, and common principles for recording and reporting environmental conditions, especially light spectra and intensities.
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- 2017
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16. SHInE - Simultaneous HCR, Immunohistochemistry, Nuclear staining and EdU v1
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Kristin Tessmar-Raible, Florian Raible, Aida Ćorić, and Alexander Stockinger
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This protocol allows the multiplexed use of four different molecular labelling techniques in whole-mount Platynereis tissues. In short, gene expression (via in situ HCR 3.0), cell proliferation (via EdU labelling), proteins (via Immunohistochemistry) and nuclei (DAPI/Hoechst staining) can be assessed in whole-mount tissue samples, allowing the co-visualisation of various types of molecules in the same specimen. This protocol combines knowledge from multiple sources (see below), and is being submitted in parallel with a manuscript detailing the applications of the method. (We will add the reference as soon as it's available.) We successfully applied this protocol to heads and posterior regenerates of the bristleworm Platynereis dumerilii, at various developmental stages of the animal. Given the general nature of the detected molecules, and the wide-spread use of the individual detection techniques, we anticipate that this protocol will be well applicable to a wider range of model systems. References: 1) Choi HMT, Calvert CR, Husain N, Huss D, Barsi JC, Deverman BE, Hunter RC, Kato M, Lee SM, Abelin ACT, Rosenthal AZ, Akbari OS, Li Y, Hay BA, Sternberg PW, Patterson PH, Davidson EH, Mazmanian SK, Prober DA, Rijn M van de, Leadbetter JR, Newman DK, Readhead C, Bronner ME, Wold B, Lansford R, Sauka-Spengler T, Fraser SE, Pierce NA. 2016. Mapping a multiplexed zoo of mRNA expression. Development 143:3632–3637. doi:10.1242/dev.140137 2) Choi HMT, Schwarzkopf M, Fornace ME, Acharya A, Artavanis G, Stegmaier J, Cunha A, Pierce NA. 2018. Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust. Development 145:dev165753. doi:10.1242/dev.165753 3) Kuehn E, Clausen DS, Null RW, Metzger BM, Willis AD, Özpolat BD. 2021. Segment number threshold determines juvenile onset of germline cluster proliferation in Platynereis dumerilii. Biorxiv 2021.04.22.439825. doi:10.1101/2021.04.22.439825 4) Pende M, Vadiwala K, Schmidbaur H, Stockinger AW, Murawala P, Saghafi S, Dekens MPS, Becker K, Revilla-i-Domingo R, Papadopoulos S-C, Zurl M, Pasierbek P, Simakov O, Tanaka EM, Raible F, Dodt H-U. 2020. A versatile depigmentation, clearing, and labeling method for exploring nervous system diversity. Sci Adv 6:eaba0365. doi:10.1126/sciadv.aba0365 5) Salic A, Mitchison TJ. 2008. A chemical method for fast and sensitive detection of DNA synthesis in vivo. Proc National Acad Sci 105:2415–2420. doi:10.1073/pnas.0712168105 6) Tessmar-Raible K, Steinmetz PRH, Snyman H, Hassel M, Arendt D. 2005. Fluorescent two-color whole mount in situ hybridization in Platynereis dumerilii (Polychaeta, Annelida), an emerging marine molecular model for evolution and development. Biotechniques 39:460–464. doi:10.2144/000112023
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- 2022
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17. Editor's evaluation: Sensory conflict disrupts circadian rhythms in the sea anemone Nematostella vectensis
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Kristin Tessmar-Raible
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- 2022
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18. Editor's evaluation: Peripheral and central employment of acid-sensing ion channels during early bilaterian evolution
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Kristin Tessmar-Raible
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- 2022
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19. Editor's evaluation: Adaptation to glucose starvation is associated with molecular reorganization of the circadian clock in Neurospora crassa
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Kristin Tessmar-Raible
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- 2022
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20. Behavioral rhythms are bad predictors of general organismal rhythmicity
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N. Sören Häfker, Laurenz Holcik, Karim Vadiwala, Isabel Beets, Audrey M. Mat, Alexander W. Stockinger, Stefan Hammer, Liliane Schoofs, Florian Raible, and Kristin Tessmar-Raible
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The circadian clock controls behavior and metabolism in various organisms. However, the exact timing and strength of rhythmic phenotypes can vary significantly between individuals of the same species. This is highly relevant for the rhythmically complex marine environments where organismal rhythmic diversity likely permits the occupation of different microenvironments. When investigating circadian locomotor behavior ofPlatynereis dumerilii,a model system for marine molecular chronobiology, we found strain-specific, high variability between individual worms. The individual patterns were reproducibly maintained for several weeks independent of basic culture conditions, such as population density or feeding. A diel head transcriptome comparison of behaviorally rhythmic versus arrhythmic wildtype worms showed that 24h cycling of core circadian clock transcripts is identical between both behavioral phenotypes. While behaviorally arrhythmic worms showed a similar total number of cycling transcripts compared to their behaviorally rhythmic counterparts, the annotation categories of their transcripts, however, differed substantially. Consistent with their locomotor phenotype, behaviorally rhythmic worms exhibit an enrichment of cycling transcripts related to neuronal/behavioral processes. In contrast, behaviorally arrhythmic worms showed significantly increased diel cycling for metabolism- and physiology-related transcripts. Phenotype-specific cycling of distinct matrix metalloproteinase transcripts, encoding extracellular enzymes that modulate synaptic circuit function and neuropeptide signaling, like pigment dispersing factor (PDF), prompted us to functionally investigatePlatynereis pdf. Differing from its role inDrosophila,loss ofpdfimpacts on overall activity levels, but shows only indirect effects on rhythmicity. Our results show that individuals arrhythmic in a given process can show increased rhythmicity in others. Across thePlatynereispopulation, variations of this exist as a reproducible continuum. We hypothesize that such diel rhythm breadth is an important biodiversity resource enabling the species to quickly adapt to heterogeneous marine environments and potentially also to the effects of climate change, which is however endangered with shrinking population sizes and hence diversity.
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- 2022
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21. Editor's evaluation: A dynamic and expandable digital 3D-atlas maker for monitoring the temporal changes in tissue growth during hindbrain morphogenesis
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Kristin Tessmar-Raible
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- 2022
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22. Circadian and Circalunar Clock Interactions in a Marine Annelid
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Juliane Zantke, Tomoko Ishikawa-Fujiwara, Enrique Arboleda, Claudia Lohs, Katharina Schipany, Natalia Hallay, Andrew D. Straw, Takeshi Todo, and Kristin Tessmar-Raible
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Biology (General) ,QH301-705.5 - Abstract
Life is controlled by multiple rhythms. Although the interaction of the daily (circadian) clock with environmental stimuli, such as light, is well documented, its relationship to endogenous clocks with other periods is little understood. We establish that the marine worm Platynereis dumerilii possesses endogenous circadian and circalunar (monthly) clocks and characterize their interactions. The RNAs of likely core circadian oscillator genes localize to a distinct nucleus of the worm’s forebrain. The worm’s forebrain also harbors a circalunar clock entrained by nocturnal light. This monthly clock regulates maturation and persists even when circadian clock oscillations are disrupted by the inhibition of casein kinase 1δ/ε. Both circadian and circalunar clocks converge on the regulation of transcript levels. Furthermore, the circalunar clock changes the period and power of circadian behavior, although the period length of the daily transcriptional oscillations remains unaltered. We conclude that a second endogenous noncircadian clock can influence circadian clock function.
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- 2013
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23. Instrument design and protocol for the study of light controlled processes in aquatic organisms, and its application to examine the effect of infrared light on zebrafish.
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Marcus P S Dekens, Nicholas S Foulkes, and Kristin Tessmar-Raible
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Medicine ,Science - Abstract
The acquisition of reliable data strongly depends on experimental design. When studying the effects of light on processes such as behaviour and physiology it is crucial to maintain all environmental conditions constant apart from the one under study. Furthermore, the precise values of the environmental factors applied during the experiment should be known. Although seemingly obvious, these conditions are often not met when the effects of light are being studied. Here, we document and discuss the wavelengths and light intensities of natural and artificial light sources. We present standardised experimental protocols together with building plans of a custom made instrument designed to accurately control light and temperature for experiments using fresh water or marine species. Infrared light is commonly used for recording behaviour and in electrophysiological experiments although the properties of fish photoreceptors potentially allow detection into the far red. As an example of our experimental procedure we have applied our protocol and instrument to specifically test the impact of infrared light (840 nm) on the zebrafish circadian clock, which controls many aspects of behaviour, physiology and metabolism. We demonstrate that infrared light does not influence the zebrafish circadian clock. Our results help to provide a solid framework for the future study of light dependent processes in aquatic organisms.
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- 2017
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24. Rhythms of behavior: are the times changin’?
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N Sören Häfker and Kristin Tessmar-Raible
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0301 basic medicine ,Behavior ,Periodicity ,Animal life ,General Neuroscience ,Biology ,Affect (psychology) ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Rhythm ,Animals ,Humans ,Evolutionary ecology ,Neuroscience ,Ecosystem ,030217 neurology & neurosurgery ,Cognitive psychology - Abstract
Animal life is rhythmic. Here we provide an overview of various rhythmic behaviors, connected environmental factors and endogenous mechanisms. We not only cover terrestrial species, but also highlight aquatic environments with typically complex interconnected rhythms. We further address diel, seasonal and potential lunar rhythms of humans. While we cannot be complete, we aim to emphasize three aspects: First, to raise awareness for the all-encompassing presence of behavioral rhythms and their importance in ecology and evolution. Second, to raise awareness how limited our mechanistic understanding is, besides analyses in a small set of model species. Finally, we discuss how anthropogenic effects can affect behavioral rhythmicity and how this might affect ecosystems in the future, as 'For the times they are a-changin''.
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- 2020
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25. Editor's evaluation: Real time, in vivo measurement of neuronal and peripheral clocks in Drosophila melanogaster
- Author
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Kristin Tessmar-Raible
- Published
- 2022
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26. Editor's evaluation: Green fluorescent protein-like pigments optimise the internal light environment in symbiotic reef-building corals
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Kristin Tessmar-Raible
- Published
- 2022
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27. Melanopsin elevates locomotor activity during the wake state of the diurnal zebrafish
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Marcus P S Dekens, Bruno M Fontinha, Miguel Gallach, Sandra Pflügler, and Kristin Tessmar‐Raible
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Mammals ,Mice ,Rod Opsins ,Genetics ,Animals ,Molecular Biology ,Biochemistry ,Locomotion ,Zebrafish ,Melatonin - Abstract
Mammalian and fish pineals play a key role in adapting behaviour to the ambient light conditions through the release of melatonin. In mice, light inhibits nocturnal locomotor activity via the non-visual photoreceptor Melanopsin. In contrast to the extensively studied function of Melanopsin in the indirect regulation of the rodent pineal, its role in the intrinsically photosensitive zebrafish pineal has not been elucidated. Therefore, it is not evident if the light signalling mechanism is conserved between distant vertebrates, and how Melanopsin could affect diurnal behaviour. A double knockout of melanopsins (opn4.1-opn4xb) was generated in the diurnal zebrafish, which manifests attenuated locomotor activity during the wake state. Transcriptome sequencing gave insight into pathways downstream of Melanopsin, implying that sustained repression of the melatonin pathway is required to elevate locomotor activity during the diurnal wake state. Moreover, we show that light induces locomotor activity during the diurnal wake state in an intensity-dependent manner. These observations suggest a common Melanopsin-driven mechanism between zebrafish and mammals, while the diurnal and nocturnal chronotypes are inversely regulated downstream of melatonin.
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- 2022
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28. Two light sensors decode moonlight versus sunlight to adjust a plastic circadian/circalunidian clock to moon phase
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Martin Zurl, Birgit Poehn, Dirk Rieger, Shruthi Krishnan, Dunja Rokvic, Vinoth Babu Veedin Rajan, Elliot Gerrard, Matthias Schlichting, Lukas Orel, Aida Ćorić, Robert J. Lucas, Eva Wolf, Charlotte Helfrich-Förster, Florian Raible, and Kristin Tessmar-Raible
- Subjects
Cryptochromes ,Multidisciplinary ,Drosophila melanogaster ,Circadian Clocks ,Rod Opsins ,Sunlight ,Animals ,Polychaeta ,Moon ,Circadian Rhythm - Abstract
Many species synchronize their physiology and behavior to specific hours. It is commonly assumed that sunlight acts as the main entrainment signal for ∼24-h clocks. However, the moon provides similarly regular time information. Consistently, a growing number of studies have reported correlations between diel behavior and lunidian cycles. Yet, mechanistic insight into the possible influences of the moon on ∼24-h timers remains scarce. We have explored the marine bristleworm Platynereis dumerilii to investigate the role of moonlight in the timing of daily behavior. We uncover that moonlight, besides its role in monthly timing, also schedules the exact hour of nocturnal swarming onset to the nights’ darkest times. Our work reveals that extended moonlight impacts on a plastic clock that exhibits24 h (moonlit) or24 h (no moon) periodicity. Abundance, light sensitivity, and genetic requirement indicate that the Platynereis light receptor molecule r-Opsin1 serves as a receptor that senses moonrise, whereas the cryptochrome protein L-Cry is required to discriminate the proper valence of nocturnal light as either moonlight or sunlight. Comparative experiments in Drosophila suggest that cryptochrome’s principle requirement for light valence interpretation is conserved. Its exact biochemical properties differ, however, between species with dissimilar timing ecology. Our work advances the molecular understanding of lunar impact on fundamental rhythmic processes, including those of marine mass spawners endangered by anthropogenic change.
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- 2022
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29. Assessment of Circalunar (~Monthly) Rhythms
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Birgit Poehn and Kristin Tessmar-Raible
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- 2022
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30. Editor's evaluation: Cnidarian hair cell development illuminates an ancient role for the class IV POU transcription factor in defining mechanoreceptor identity
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Kristin Tessmar-Raible
- Published
- 2021
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31. Fluorescent two-color whole mount in situ hybridization in Platynereis dumerilii (Polychaeta, Annelida), an emerging marine molecular model for evolution and development
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Kristin Tessmar-Raible, Patrick R.H. Steinmetz, Heidi Snyman, Monika Hassel, and Detlev Arendt
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Biology (General) ,QH301-705.5 - Published
- 2005
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32. Editor's evaluation: Desmosomal connectomics of all somatic muscles in an annelid larva
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Kristin Tessmar-Raible
- Published
- 2021
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33. Author response: Characterization of cephalic and non-cephalic sensory cell types provides insight into joint photo- and mechanoreceptor evolution
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Hugo Musset, Moritz Smolka, Günther Prohaczka, Roger Revilla-i-Domingo, Kristin Tessmar-Raible, Lukas Orel, Robert J. Lucas, Monika Waldherr, Alexander W. Stockinger, Matthias Farlik, Elliot Gerrard, Florian Raible, and Vinoth Babu Veedin Rajan
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Mechanoreceptor ,medicine.anatomical_structure ,medicine ,Biology ,Sensory cell ,Neuroscience ,Joint (geology) - Published
- 2021
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34. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima.
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Ariel D Chipman, David E K Ferrier, Carlo Brena, Jiaxin Qu, Daniel S T Hughes, Reinhard Schröder, Montserrat Torres-Oliva, Nadia Znassi, Huaiyang Jiang, Francisca C Almeida, Claudio R Alonso, Zivkos Apostolou, Peshtewani Aqrawi, Wallace Arthur, Jennifer C J Barna, Kerstin P Blankenburg, Daniela Brites, Salvador Capella-Gutiérrez, Marcus Coyle, Peter K Dearden, Louis Du Pasquier, Elizabeth J Duncan, Dieter Ebert, Cornelius Eibner, Galina Erikson, Peter D Evans, Cassandra G Extavour, Liezl Francisco, Toni Gabaldón, William J Gillis, Elizabeth A Goodwin-Horn, Jack E Green, Sam Griffiths-Jones, Cornelis J P Grimmelikhuijzen, Sai Gubbala, Roderic Guigó, Yi Han, Frank Hauser, Paul Havlak, Luke Hayden, Sophie Helbing, Michael Holder, Jerome H L Hui, Julia P Hunn, Vera S Hunnekuhl, LaRonda Jackson, Mehwish Javaid, Shalini N Jhangiani, Francis M Jiggins, Tamsin E Jones, Tobias S Kaiser, Divya Kalra, Nathan J Kenny, Viktoriya Korchina, Christie L Kovar, F Bernhard Kraus, François Lapraz, Sandra L Lee, Jie Lv, Christigale Mandapat, Gerard Manning, Marco Mariotti, Robert Mata, Tittu Mathew, Tobias Neumann, Irene Newsham, Dinh N Ngo, Maria Ninova, Geoffrey Okwuonu, Fiona Ongeri, William J Palmer, Shobha Patil, Pedro Patraquim, Christopher Pham, Ling-Ling Pu, Nicholas H Putman, Catherine Rabouille, Olivia Mendivil Ramos, Adelaide C Rhodes, Helen E Robertson, Hugh M Robertson, Matthew Ronshaugen, Julio Rozas, Nehad Saada, Alejandro Sánchez-Gracia, Steven E Scherer, Andrew M Schurko, Kenneth W Siggens, DeNard Simmons, Anna Stief, Eckart Stolle, Maximilian J Telford, Kristin Tessmar-Raible, Rebecca Thornton, Maurijn van der Zee, Arndt von Haeseler, James M Williams, Judith H Willis, Yuanqing Wu, Xiaoyan Zou, Daniel Lawson, Donna M Muzny, Kim C Worley, Richard A Gibbs, Michael Akam, and Stephen Richards
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Myriapods (e.g., centipedes and millipedes) display a simple homonomous body plan relative to other arthropods. All members of the class are terrestrial, but they attained terrestriality independently of insects. Myriapoda is the only arthropod class not represented by a sequenced genome. We present an analysis of the genome of the centipede Strigamia maritima. It retains a compact genome that has undergone less gene loss and shuffling than previously sequenced arthropods, and many orthologues of genes conserved from the bilaterian ancestor that have been lost in insects. Our analysis locates many genes in conserved macro-synteny contexts, and many small-scale examples of gene clustering. We describe several examples where S. maritima shows different solutions from insects to similar problems. The insect olfactory receptor gene family is absent from S. maritima, and olfaction in air is likely effected by expansion of other receptor gene families. For some genes S. maritima has evolved paralogues to generate coding sequence diversity, where insects use alternate splicing. This is most striking for the Dscam gene, which in Drosophila generates more than 100,000 alternate splice forms, but in S. maritima is encoded by over 100 paralogues. We see an intriguing linkage between the absence of any known photosensory proteins in a blind organism and the additional absence of canonical circadian clock genes. The phylogenetic position of myriapods allows us to identify where in arthropod phylogeny several particular molecular mechanisms and traits emerged. For example, we conclude that juvenile hormone signalling evolved with the emergence of the exoskeleton in the arthropods and that RR-1 containing cuticle proteins evolved in the lineage leading to Mandibulata. We also identify when various gene expansions and losses occurred. The genome of S. maritima offers us a unique glimpse into the ancestral arthropod genome, while also displaying many adaptations to its specific life history.
- Published
- 2014
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35. Two light sensors decode moonlight versus sunlight to adjust a plastic circadian/circalunidian clock to moon phase
- Author
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Florian Raible, Martin Zurl, Eva Wolf, Dunja Rokvic, Shruthi Krishnan, Lukas Orel, Birgit Poehn, Vinoth Babu Veedin Rajan, Kristin Tessmar-Raible, Matthias Schlichting, Elliot Gerrard, Dirk Rieger, Charlotte Helfrich-Förster, and Robert J. Lucas
- Subjects
Sunlight ,Moonlight ,Light sensitivity ,Cryptochrome ,biology ,Circadian rhythm ,Nocturnal ,biology.organism_classification ,Entrainment (chronobiology) ,Platynereis ,Astrobiology - Abstract
Many species synchronize their physiology and behavior to specific hours. It is commonly assumed that sunlight acts as the main entrainment signal for ~24h clocks. However, the moon provides similarly regular time information, and increasingly studies report correlations between diel behavior and lunidian cycles. Yet, mechanistic insight into the possible influences of the moon on ~24hr timers is scarce.We studiedPlatynereis dumeriliiand uncover that the moon, besides its role in monthly timing, also schedules the exact hour of nocturnal swarming onset to the nights’ darkest times. Moonlight adjusts a plastic clock, exhibiting 24h (no moon) periodicity. Abundance, light sensitivity, and genetic requirement indicatePlatynereisr-Opsin1 as receptor to determine moonrise, while the cryptochrome L-Cry is required to discriminate between moon- and sunlight valence. Comparative experiments inDrosophilasuggest that Cryptochrome’s requirement for light valence interpretation is conserved. Its exact biochemical properties differ, however, between species with dissimilar timing ecology.Our work advances the molecular understanding of lunar impact on fundamental rhythmic processes, including those of marine mass spawners endangered by anthropogenic change.
- Published
- 2021
- Full Text
- View/download PDF
36. A Cryptochrome adopts distinct moon- and sunlight states and functions as sun- versus moonlight interpreter in monthly oscillator entrainment
- Author
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Coric A, Lukas Orel, Eva Wolf, Rokvic D, Florian Raible, Kristin Tessmar-Raible, Enrique Arboleda, Martin Zurl, Birgit Poehn, and Krishnan S
- Subjects
Moonlight ,Sunlight ,Platynereis dumerilii ,Cryptochrome ,Biology ,Nocturnal ,biology.organism_classification ,Entrainment (chronobiology) ,Full moon ,Astrobiology - Abstract
The moon’s monthly cycle synchronizes reproduction in countless marine organisms. The mass-spawning bristle worm Platynereis dumerilii uses an endogenous monthly oscillator to phase reproduction to specific days. Classical work showed that this oscillator is set by full moon. But how do organisms recognize such a specific moon phase? We uncover that the light receptor L-Cryptochrome (L-Cry) is able to discriminate between different moonlight durations, as well as between sun- and moonlight. Consistent with L-Cry’s function as light valence interpreter, its genetic loss leads to a faster re-entrainment under artificially strong nocturnal light. This suggests that L-Cry blocks “wrong” light from impacting on the monthly oscillator. A biochemical characterization of purified L-Cry protein, exposed to naturalistic sun- or moonlight, reveals the formation of distinct sun- and moonlight states characterized by different photoreduction- and recovery kinetics of L-Cry’s co-factor Flavin Adenine Dinucleotide. In vivo, L-Cry’s sun-versus moonlight states correlate with distinct sub-cellular localizations, indicating different signalling. In contrast, r-Opsin1, the most abundant ocular opsin, is not required for monthly oscillator entrainment. Our work reveals a new concept for correct moonlight interpretation involving a “valence interpreter” that provides entraining photoreceptor(s) with light source and moon phase information. These findings advance our mechanistic understanding of a fundamental biological phenomenon: moon-controlled monthly timing. Such level of understanding is also an essential prerequisite to tackle anthropogenic threats on marine ecology.
- Published
- 2021
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37. Editor's evaluation: Testosterone pulses paired with a location induce a place preference to the nest of a monogamous mouse under field conditions
- Author
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Kristin Tessmar-Raible
- Published
- 2021
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38. Tools for gene-regulatory analyses in the marine annelid Platynereis dumerilii.
- Author
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Benjamin Backfisch, Vitaly V Kozin, Stephan Kirchmaier, Kristin Tessmar-Raible, and Florian Raible
- Subjects
Medicine ,Science - Abstract
The advent of high-throughput sequencing technology facilitates the exploration of a variety of reference species outside the few established molecular genetic model systems. Bioinformatic and gene expression analyses provide new ways for comparative analyses between species, for instance, in the field of evolution and development. Despite these advances, a critical bottleneck for the exploration of new model species remains the establishment of functional tools, such as the ability to experimentally express genes in specific cells of an organism. We recently established a first transgenic strain of the annelid Platynereis, using a Tc1/mariner-type Mos1 transposon vector. Here, we compare Mos1 with Tol2, a member of the hAT family of transposons. In Platynereis, Tol2-based constructs showed a higher frequency of nuclear genome insertion and sustained gene expression in the G0 generation. However, in contrast to Mos1-mediated transgenes, Tol2-mediated insertions failed to retain fluorescence in the G1 generation, suggesting a germ line-based silencing mechanism. Furthermore, we present three novel expression constructs that were generated by a simple fusion-PCR approach and allow either ubiquitous or cell-specific expression of a reporter gene. Our study indicates the versatility of Tol2 for transient transgenesis, and provides a template for transgenesis work in other emerging reference species.
- Published
- 2014
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39. Characterization of cephalic and non-cephalic sensory cell types provides insight into joint photo- and mechanoreceptor evolution
- Author
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Florian Raible, Vinoth Babu Veedin Rajan, Matthias Farlik, Lukas Orel, Monika Waldherr, Elliot Gerrard, Kristin Tessmar-Raible, Robert J. Lucas, Roger Revilla-i-Domingo, Hugo Musset, Moritz Smolka, and Günther Prohaczka
- Subjects
Mechanoreceptor ,Cell type ,Opsin ,medicine.anatomical_structure ,Mechanosensation ,medicine ,Sensory system ,Biology ,Sensory cell ,Neuroscience ,Function (biology) ,Visual phototransduction - Abstract
Rhabdomeric Opsins (r-Opsins) are light-sensors in cephalic eye photoreceptors, but also function in additional sensory organs. This has prompted questions on the evolutionary relationship of these cell types, and if ancient r-Opsins cells were non-photosensory. Our profiling of cephalic and non-cephalic r-opsin1-expressing cells of the marine bristlewormPlatynereis dumeriliireveals shared and distinct features. Non-cephalic cells possess a full set of phototransduction components, but also a mechanosensory signature. We determine that Pdu-r-Opsin1 is a Gαq-coupled blue-light receptor. Profiling of cells fromr-opsin1mutants versus wild-types, and a comparison under different light conditions reveals that in the non-cephalic cells, light – mediated by r-Opsin1 – adjusts the expression level of a calcium transporter relevant for auditory mechanosensation in vertebrates. We establish a deep learning-based quantitative behavioral analysis for animal trunk movements, and identify a light-and r-Opsin-1-dependent fine-tuning of the worm’s undulatory movements in headless trunks, which are known to require mechanosensory feedback.Our results suggest an evolutionary concept in which r-Opsins act as ancient, light-dependent modulators of mechanosensation, and suggest that light-independent mechanosensory roles of r-Opsins likely evolved secondarily.
- Published
- 2021
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40. Seasonal variation in UVA light drives hormonal and behavioural changes in a marine annelid via a ciliary opsin
- Author
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N Sören Häfker, Vinoth Babu Veedin Rajan, Maria Christina Buia, Birgit Poehn, Robert J. Lucas, Elliot Gerrard, Thomas Gossenreiter, Maximillian Hofbauer, Enrique Arboleda, Kristin Tessmar-Raible, Markus Hartl, Christopher Gerner, Christian Mühlestein, Maurizio Ribera d'Alcalà, and Andrea Bileck
- Subjects
0301 basic medicine ,photoperiodism ,Opsin ,Annelid ,Ecology ,biology ,Zoology ,Vasotocin ,Ultraviolet a ,Seasonality ,medicine.disease ,biology.organism_classification ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,0302 clinical medicine ,chemistry ,13. Climate action ,medicine ,14. Life underwater ,030217 neurology & neurosurgery ,Ecology, Evolution, Behavior and Systematics ,Hormone ,Uva light - Abstract
The right timing of animal physiology and behaviour ensures the stability of populations and ecosystems. To predict anthropogenic impacts on these timings, more insight is needed into the interplay between environment and molecular timing mechanisms. This is particularly true in marine environments. Using high-resolution, long-term daylight measurements from a habitat of the marine annelid Platynereis dumerilii, we found that temporal changes in ultraviolet A (UVA)/deep violet intensities, more than longer wavelengths, can provide annual time information, which differs from annual changes in the photoperiod. We developed experimental set-ups that resemble natural daylight illumination conditions, and automated, quantifiable behavioural tracking. Experimental reduction of UVA/deep violet light (approximately 370–430 nm) under a long photoperiod (16 h light and 8 h dark) significantly decreased locomotor activities, comparable to the decrease caused by a short photoperiod (8 h light and 16 h dark). In contrast, altering UVA/deep violet light intensities did not cause differences in locomotor levels under a short photoperiod. This modulation of locomotion by UVA/deep violet light under a long photoperiod requires c-opsin1, a UVA/deep violet sensor employing Gi signalling. C-opsin1 also regulates the levels of rate-limiting enzymes for monogenic amine synthesis and of several neurohormones, including pigment-dispersing factor, vasotocin (vasopressin/oxytocin) and neuropeptide Y. Our analyses indicate a complex inteplay between UVA/deep violet light intensities and photoperiod as indicators of annual time. The intensity of UVA light, in addition to the photoperiod, is shown to determine seasonal change in the marine mass spawning annelid Platynereis dumerilii.
- Published
- 2021
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- View/download PDF
41. TMT-Opsins differentially modulate medaka brain function in a context-dependent manner
- Author
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Mariam Al-Rawi, Arndt von Haeseler, Herwig Baier, Bruno M. Fontinha, Ruth M. Fischer, Miguel Gallach, Maximilian Hofbauer, Theresa Zekoll, Florian Reithofer, Kristin Tessmar-Raible, and Alison J. Barker
- Subjects
Opsin ,Life Cycles ,Embryo, Nonmammalian ,genetic structures ,Light ,Circadian clock ,Mutant ,Oryzias ,Social Sciences ,Zebrafish Hindbrain ,Animals, Genetically Modified ,0302 clinical medicine ,Larvae ,Medicine and Health Sciences ,Psychology ,Biology (General) ,Zebrafish ,Data Management ,0303 health sciences ,biology ,Animal Behavior ,Behavior, Animal ,General Neuroscience ,Physics ,Electromagnetic Radiation ,Vertebrate ,Eukaryota ,Brain ,Animal Models ,Experimental Organism Systems ,Osteichthyes ,Physical Sciences ,Vertebrates ,Anatomy ,General Agricultural and Biological Sciences ,Research Article ,Computer and Information Sciences ,QH301-705.5 ,Hindbrain ,Context (language use) ,Research and Analysis Methods ,General Biochemistry, Genetics and Molecular Biology ,Preprohormone ,03 medical and health sciences ,Model Organisms ,Ocular System ,biology.animal ,Transcription Activator-Like Effector Nucleases ,Animals ,Gene ,Ecosystem ,030304 developmental biology ,Behavior ,Metadata ,General Immunology and Microbiology ,Opsins ,Organisms ,Biology and Life Sciences ,biology.organism_classification ,eye diseases ,Fish ,Evolutionary biology ,Animal Studies ,Eyes ,Gene-Environment Interaction ,sense organs ,human activities ,Zoology ,Head ,030217 neurology & neurosurgery ,Function (biology) ,Developmental Biology - Abstract
Vertebrate behavior is strongly influenced by light. Light receptors, encoded by functional opsin proteins, are present inside the vertebrate brain and peripheral tissues. This expression feature is present from fishes to human and appears to be particularly prominent in diurnal vertebrates. Despite their conserved widespread occurrence, the nonvisual functions of opsins are still largely enigmatic. This is even more apparent when considering the high number of opsins. Teleosts possess around 40 opsin genes, present from young developmental stages to adulthood. Many of these opsins have been shown to function as light receptors. This raises the question of whether this large number might mainly reflect functional redundancy or rather maximally enables teleosts to optimally use the complex light information present under water. We focus on tmt-opsin1b and tmt-opsin2, c-opsins with ancestral-type sequence features, conserved across several vertebrate phyla, expressed with partly similar expression in non-rod, non-cone, non-retinal-ganglion-cell brain tissues and with a similar spectral sensitivity. The characterization of the single mutants revealed age- and light-dependent behavioral changes, as well as an impact on the levels of the preprohormone sst1b and the voltage-gated sodium channel subunit scn12aa. The amount of daytime rest is affected independently of the eyes, pineal organ, and circadian clock in tmt-opsin1b mutants. We further focused on daytime behavior and the molecular changes in tmt-opsin1b/2 double mutants, and found that—despite their similar expression and spectral features—these opsins interact in part nonadditively. Specifically, double mutants complement molecular and behavioral phenotypes observed in single mutants in a partly age-dependent fashion. Our work provides a starting point to disentangle the highly complex interactions of vertebrate nonvisual opsins, suggesting that tmt-opsin-expressing cells together with other visual and nonvisual opsins provide detailed light information to the organism for behavioral fine-tuning. This work also provides a stepping stone to unravel how vertebrate species with conserved opsins, but living in different ecological niches, respond to similar light cues and how human-generated artificial light might impact on behavioral processes in natural environments., Why do teleosts possess more than 40 opsins, many expressed outside the eyes? This study reveals that combined loss of two non-visual opsins rescues the effects of their individual losses on behavior, and on brain levels of the pre-pro-hormone sst1b and a voltage-gated sodium channel subunit. This implicates tmt-opsin-expressing cells, together with other opsins, in behavioral fine-tuning, dependent on ambient light.
- Published
- 2021
42. Co-expression of VAL- and TMT-opsins uncovers ancient photosensory interneurons and motorneurons in the vertebrate brain.
- Author
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Ruth M Fischer, Bruno M Fontinha, Stephan Kirchmaier, Julia Steger, Susanne Bloch, Daigo Inoue, Satchidananda Panda, Simon Rumpel, and Kristin Tessmar-Raible
- Subjects
Biology (General) ,QH301-705.5 - Abstract
The functional principle of the vertebrate brain is often paralleled to a computer: information collected by dedicated devices is processed and integrated by interneuron circuits and leads to output. However, inter- and motorneurons present in today's vertebrate brains are thought to derive from neurons that combined sensory, integration, and motor function. Consistently, sensory inter-motorneurons have been found in the simple nerve nets of cnidarians, animals at the base of the evolutionary lineage. We show that light-sensory motorneurons and light-sensory interneurons are also present in the brains of vertebrates, challenging the paradigm that information processing and output circuitry in the central brain is shielded from direct environmental influences. We investigated two groups of nonvisual photopigments, VAL- and TMT-Opsins, in zebrafish and medaka fish; two teleost species from distinct habitats separated by over 300 million years of evolution. TMT-Opsin subclasses are specifically expressed not only in hypothalamic and thalamic deep brain photoreceptors, but also in interneurons and motorneurons with no known photoreceptive function, such as the typeXIV interneurons of the fish optic tectum. We further show that TMT-Opsins and Encephalopsin render neuronal cells light-sensitive. TMT-Opsins preferentially respond to blue light relative to rhodopsin, with subclass-specific response kinetics. We discovered that tmt-opsins co-express with val-opsins, known green light receptors, in distinct inter- and motorneurons. Finally, we show by electrophysiological recordings on isolated adult tectal slices that interneurons in the position of typeXIV neurons respond to light. Our work supports "sensory-inter-motorneurons" as ancient units for brain evolution. It also reveals that vertebrate inter- and motorneurons are endowed with an evolutionarily ancient, complex light-sensory ability that could be used to detect changes in ambient light spectra, possibly providing the endogenous equivalent to an optogenetic machinery.
- Published
- 2013
- Full Text
- View/download PDF
43. Conditional and specific cell ablation in the marine annelid Platynereis dumerilii.
- Author
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Vinoth Babu Veedin-Rajan, Ruth M Fischer, Florian Raible, and Kristin Tessmar-Raible
- Subjects
Medicine ,Science - Abstract
The marine annelid Platynereis dumerilii has become a model system for evo-devo, neurobiology and marine biology. The functional assessment of its cell types, however, has so far been very limited. Here we report on the establishment of a generally applicable, cell type specific ablation technique to overcome this restriction. Using a transgenic strain expressing the bacterial enzyme nitroreductase (ntr) under the control of the worm's r-opsin1 locus, we show that the demarcated photoreceptor cells can be specifically ablated by the addition of the prodrug metronidazole (mtz). TUNEL staining indicates that ntr expressing cells undergo apoptotic cell death. As we used a transgenic strain co-expressing ntr with enhanced green fluorescent protein (egfp) coding sequence, we were able to validate the ablation of photoreceptors not only in fixed tissue, using r-opsin1 riboprobes, but also by monitoring eGFP+ cells in live animals. The specificity of the ablation was demonstrated by the normal presence of the eye pigment cells, as well as of neuronal markers expressed in other cells of the brain, such as phc2, tyrosine hydroxylase and brn1/2/4. Additional analyses of the position of DAPI stained nuclei, the brain's overall neuronal scaffold, as well as the positions and projections of serotonergic neurons further confirmed that mtz treatment did not induce general abnormalities in the worm's brain. As the prodrug is administered by adding it to the water, targeted ablation of specific cell types can be achieved throughout the life of the animal. We show that ablation conditions need to be adjusted to the size of the worms, likely due to differences in the penetration of the prodrug, and establish ablation conditions for worms containing 10 to 55 segments. Our results establish mtz/ntr mediated conditional cell ablation as a powerful functional tool in Platynereis.
- Published
- 2013
- Full Text
- View/download PDF
44. Seasonal variation in UVA light drives hormonal and behavioural changes in a marine annelid via a ciliary opsin
- Author
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Vinoth Babu, Veedin Rajan, N Sören, Häfker, Enrique, Arboleda, Birgit, Poehn, Thomas, Gossenreiter, Elliot, Gerrard, Maximillian, Hofbauer, Christian, Mühlestein, Andrea, Bileck, Christopher, Gerner, Maurizio, Ribera d'Alcala, Maria C, Buia, Markus, Hartl, Robert J, Lucas, and Kristin, Tessmar-Raible
- Subjects
Opsins ,Photoperiod ,Animals ,Polychaeta ,Seasons ,Ecosystem - Abstract
The right timing of animal physiology and behaviour ensures the stability of populations and ecosystems. To predict anthropogenic impacts on these timings, more insight is needed into the interplay between environment and molecular timing mechanisms. This is particularly true in marine environments. Using high-resolution, long-term daylight measurements from a habitat of the marine annelid Platynereis dumerilii, we found that temporal changes in ultraviolet A (UVA)/deep violet intensities, more than longer wavelengths, can provide annual time information, which differs from annual changes in the photoperiod. We developed experimental set-ups that resemble natural daylight illumination conditions, and automated, quantifiable behavioural tracking. Experimental reduction of UVA/deep violet light (approximately 370-430 nm) under a long photoperiod (16 h light and 8 h dark) significantly decreased locomotor activities, comparable to the decrease caused by a short photoperiod (8 h light and 16 h dark). In contrast, altering UVA/deep violet light intensities did not cause differences in locomotor levels under a short photoperiod. This modulation of locomotion by UVA/deep violet light under a long photoperiod requires c-opsin1, a UVA/deep violet sensor employing G
- Published
- 2020
45. The Still Dark Side of the Moon: Molecular Mechanisms of Lunar-Controlled Rhythms and Clocks
- Author
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Kristin Tessmar-Raible and Gabriele Andreatta
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lunar rhythms ,Light ,proteome ,QTL, quantitative trait loci ,Biology ,Marine species ,Article ,03 medical and health sciences ,Lunar Cycle ,0302 clinical medicine ,Rhythm ,FR-FM, free-running full moon ,Structural Biology ,Behavioral study ,Circadian Clocks ,Animals ,GnRH, gonadotropin-releasing hormone ,Circadian rhythm ,Moon ,Molecular Biology ,030304 developmental biology ,FM, full moon ,0303 health sciences ,hormones ,Far side of the Moon ,Adaptation, Physiological ,Circadian Rhythm ,PRX, peroxiredoxin ,Evolutionary biology ,physiology ,LQM, last quarter moon ,NM, new moon ,DD, dark/dark ,Period length ,transcriptome ,FQM, first quarter moon ,030217 neurology & neurosurgery ,Metabolic Networks and Pathways - Abstract
Starting with the beginning of the last century, a multitude of scientific studies has documented that the lunar cycle times behaviors and physiology in many organisms. It is plausible that even the first life forms adapted to the different rhythms controlled by the moon. Consistently, many marine species exhibit lunar rhythms, and also the number of documented “lunar-rhythmic” terrestrial species is increasing. Organisms follow diverse lunar geophysical/astronomical rhythms, which differ significantly in terms of period length: from hours (circalunidian and circatidal rhythms) to days (circasemilunar and circalunar cycles). Evidence for internal circatital and circalunar oscillators exists for a range of species based on past behavioral studies, but those species with well-documented behaviorally free-running lunar rhythms are not typically used for molecular studies. Thus, the underlying molecular mechanisms are largely obscure: the dark side of the moon. Here we review findings that start to connect molecular pathways with moon-controlled physiology and behaviors. The present data indicate connections between metabolic/endocrine pathways and moon-controlled rhythms, as well as interactions between circadian and circatidal/circalunar rhythms. Moreover, recent high-throughput analyses provide useful leads toward pathways, as well as molecular markers. However, for each interpretation, it is important to carefully consider the, partly substantially differing, conditions used in each experimental paradigm. In the future, it will be important to use lab experiments to delineate the specific mechanisms of the different solar- and lunar-controlled rhythms, but to also start integrating them together, as life has evolved equally long under rhythms of both sun and moon., Graphical abstract Unlabelled Image, Highlights • Historical and physiological/behavioral perspective on moon-controlled rhythms • Overview of the different types of lunar rhythms: possible mechanistic implications • Examples for inner oscillator-driven lunar rhythms • Overview of the interactions between known core circadian clocks and moon-controlled rhythms/clocks • Overview of neurohormonal systems in the context of lunar rhythms • Summary of several transcriptomics and proteomics analyses: possible commonalties and discrepancies • Physiological, behavioral, and molecular evidence for lunar influences on terrestrial organisms
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- 2020
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46. Differential Impacts of the Head on Platynereis dumerilii Peripheral Circadian Rhythms
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Martin Zurl, Kristin Tessmar-Raible, Monika Waldherr, and Enrique Arboleda
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0301 basic medicine ,Physiology ,Circadian clock ,Danio ,Biology ,Bristle ,rhythm ,lcsh:Physiology ,03 medical and health sciences ,0302 clinical medicine ,Rhythm ,Physiology (medical) ,14. Life underwater ,Circadian rhythm ,lcsh:QP1-981 ,marine ,biology.organism_classification ,daily ,Chromatophore ,locomotion ,clock ,chromatophores ,030104 developmental biology ,annelid ,Drosophila melanogaster ,transcription ,Neuroscience ,030217 neurology & neurosurgery ,Platynereis - Abstract
The marine bristle worm Platynereis dumerilii is a useful functional model system for the study of the circadian clock and its interplay with others, e.g. circalunar clocks. The focus has so far been on the worm’s head. However, behavioral and physiological cycles in other animals typically arise from the coordination of circadian clocks located in the brain and in peripheral tissues. Here we focus on peripheral circadian rhythms and clocks, revisit and expand classical circadian work on the worm’s chromatophores, investigate locomotion as read-out and include molecular analyses. We establish that different pieces of the trunk exhibit synchronized, robust oscillations of core circadian clock genes. These circadian core clock transcripts are under strong control of the light-dark cycle, quickly losing synchronized oscillation under constant darkness, irrespective of the absence or presence of heads. Different wavelengths are differently effective in controlling the peripheral molecular synchronization. We have previously shown that locomotor activity is under circadian clock control. Here we show that upon decapitation worms exhibit strongly reduced activity levels. While still following the light-dark cycle, locomotor rhythmicity under constant darkness is less clear. We also observe the rhythmicity of pigments in the worm’s individual chromatophores, confirming their circadian pattern. These size changes continue under constant darkness, but cannot be re-entrained by light upon decapitation. Our works thus provides the first basic characterization of the peripheral circadian clock of Platynereis dumerilii. In the absence of the head, light is essential as a major synchronization cue for peripheral molecular and locomotor circadian rhythms, while circadian changes in chromatophore size can continue for several days in the absence of light/dark changes and the head. Thus, in Platynereis the dependence on the head depends on the type of peripheral rhythm studied. These data show that peripheral circadian rhythms and clocks should also be considered in "non-conventional" molecular model systems, i.e. outside Drosophila melanogaster, Danio rerio and Mus musculus, and build a basic foundation for future investigations of interactions of clocks with different period lengths in marine organisms.
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- 2019
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47. Differential impacts of the head onPlatynereis dumeriliiperipheral circadian rhythms
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Kristin Tessmar-Raible, Martin Zurl, and Enrique Arboleda
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0303 health sciences ,Period (gene) ,Circadian clock ,Biology ,Constant darkness ,biology.organism_classification ,Chromatophore ,Peripheral ,03 medical and health sciences ,0302 clinical medicine ,Rhythm ,Platynereis dumerilii ,sense organs ,Circadian rhythm ,Neuroscience ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
BackgroundThe marine bristle wormPlatynereis dumeriliiis a useful functional model system for the study of the circadian clock and its interplay with others, e.g. circalunar clocks. The focus has so far been on the worm’s head. However, behavioral and physiological cycles in other animals typically arise from the coordination of circadian clocks located in the brain and in peripheral tissues. Here we focus on peripheral circadian rhythms and clocks, revisit and expand classical circadian work on the worm’s chromatophores, investigate locomotion as read-out and include molecular analyses.ResultsWe establish that different pieces of the trunk exhibit synchronized, robust oscillations of core circadian clock genes. These circadian core clock transcripts are under strong control of the light-dark cycle, quickly losing synchronized oscillation under constant darkness, irrespective of the absence or presence of heads. Different wavelengths are differently effective in controlling the peripheral molecular synchronization. We have previously shown that locomotor activity is under circadian clock control. Here we show that upon decapitation it still follows the light-dark cycle, but does not free-run under constant darkness. We also observe the rhythmicity of pigments in the worm’s individual chromatophores, confirming that chromatophore size changes follow a circadian pattern. These size changes continue under constant darkness, but cannot be re-entrained by light upon decapitation.ConclusionsHere we provide the first basic characterization of the peripheral circadian clock ofPlatynereis dumerilii. In the absence of the head, light is essential as a major synchronization cue for peripheral molecular and locomotor circadian rhythms. Circadian changes in chromatophore size can however continue for several days in the absence of light/dark changes and the head. Thus, the dependence on the head depends on the type of peripheral rhythm studied. These data show that peripheral circadian rhythms and clocks should be considered when investigating the interactions of clocks with different period lengths, a notion likely also true for other organisms with circadian and non-circadian clocks.
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- 2019
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48. Author response: Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase
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Andrea Bileck, Florian Raible, Bui Quang Minh, Dorothea Anrather, Kristin Tessmar-Raible, Fritz J. Sedlazeck, Markus Hartl, Christopher Gerner, Arndt von Haeseler, Sven Schenk, and Stephanie C Bannister
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Transcriptome ,Clock phase ,Proteome profiling ,Sex Maturation ,Computational biology ,Biology - Published
- 2019
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49. Parents in science
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Florian Raible, Emily Perry, and Kristin Tessmar-Raible
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Parents ,Medical education ,Career Choice ,lcsh:QH426-470 ,010504 meteorology & atmospheric sciences ,Decision Making ,0211 other engineering and technologies ,MEDLINE ,021107 urban & regional planning ,02 engineering and technology ,Biology ,01 natural sciences ,Research Personnel ,Human genetics ,Q and A ,lcsh:Genetics ,lcsh:Biology (General) ,Genome Biology ,Humans ,Personal experience ,Child ,lcsh:QH301-705.5 ,Career choice ,0105 earth and related environmental sciences - Abstract
As part of our Q&A series, Genome Biology spoke to four scientists about their personal experiences as parents in their careers to highlight the challenges of researchers having children and the support they need in this regard. Our participants also included a couple (Kristin Tessmar-Raible and Florian Raible), as we were interested to know whether both parents being active researchers can have an impact. One of our participants wishes to remain anonymous.
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- 2018
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50. A Go-type opsin mediates the shadow reflex in the annelid Platynereis dumerilii
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Martin Gühmann, Kristin Tessmar-Raible, Vinoth Babu Veedin Rajan, Thomas Ayers, and Hisao Tsukamoto
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non-visual ,0301 basic medicine ,Opsin ,genetic structures ,Physiology ,shadow reflex ,Plant Science ,Bristle ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Structural Biology ,evolution ,Shadow ,lcsh:QH301-705.5 ,Ecology, Evolution, Behavior and Systematics ,Appendage ,Annelid ,biology ,opsins ,Platynereis dumerilii ,marine ,Cell Biology ,biology.organism_classification ,behaviour ,Cell biology ,030104 developmental biology ,lcsh:Biology (General) ,peripheral photoreceptors ,Reflex ,sense organs ,annelid ,General Agricultural and Biological Sciences ,Developmental Biology ,Biotechnology ,Platynereis - Abstract
Background The presence of photoreceptive molecules outside the eye is widespread among animals, yet their functions in the periphery are less well understood. Marine organisms, such as annelid worms, exhibit a ‘shadow reflex’, a defensive withdrawal behaviour triggered by a decrease in illumination. Herein, we examine the cellular and molecular underpinnings of this response, identifying a role for a photoreceptor molecule of the Go-opsin class in the shadow response of the marine bristle worm Platynereis dumerilii. Results We found Pdu-Go-opsin1 expression in single specialised cells located in adult Platynereis head and trunk appendages, known as cirri. Using gene knock-out technology and ablation approaches, we show that the presence of Go-opsin1 and the cirri is necessary for the shadow reflex. Consistently, quantification of the shadow reflex reveals a chromatic dependence upon light of approximately 500 nm in wavelength, matching the photoexcitation characteristics of the Platynereis Go-opsin1. However, the loss of Go-opsin1 does not abolish the shadow reflex completely, suggesting the existence of a compensatory mechanism, possibly acting through a ciliary-type opsin, Pdu-c-opsin2, with a Lambdamax of approximately 490 nm. Conclusions We show that a Go-opsin is necessary for the shadow reflex in a marine annelid, describing a functional example for a peripherally expressed photoreceptor, and suggesting that, in different species, distinct opsins contribute to varying degrees to the shadow reflex.
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- 2018
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