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We present the results of multivariate and exploratory statistical analyses of a large dataset that includes zooarchaeological, archaeobotanical, chrono‐cultural and proxy environmental data. Data are drawn from published specialist reports from 39 archaeological sites and include 49 distinct chronological contexts dated from the Chalcolithic to Bronze Age (c.5300–1500 BCE) in southern Central Asia. Results support broad observations on the stability of agro‐pastoral subsistence, while indicating that the environment had a minor influence in comparison with the economic and cultural use of species, as revealed through subtle variations across sites and as packages of co‐occurring taxa that link sites within integrated socio‐economies. [ABSTRACT FROM AUTHOR]