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We present a catalog of $\sim$52,000 extragalactic HII regions and their spectroscopic properties obtained using Integral Field Spectroscopy (IFS) from MUSE observations. The sample analyzed in this study contains 678 galaxies within the nearby Universe (0.004 < z < 0.06) covering different morphological types and a wide range of stellar masses (6 < log(M$_{*}$/M$_{\odot}$) < 13). Each galaxy was analyzed using the Pipe3D and pyHIIextractor codes to obtain information of the ionized gas and underlying stellar populations. Specifically, the fluxes, equivalent widths, velocities and velocity dispersions of 30 emission lines covering the wavelength range between $\lambda$4750A to $\lambda$9300A, were extracted and were used to estimate luminosity weighted ages and metallicities of the underlying stellar populations from each HII region (of the original sample we detect HII regions in 539 galaxies). In addition, we introduce and apply a novel method and independent of any intrinsic physical property to estimate and decontaminate the contribution of the diffuse ionized gas. Using the final catalog, we explore the dependence of properties of the HII regions on different local and global galaxy parameters: (i) Hubble type, (ii) stellar mass, (iii) galactocentric distance, and (iv) the age and metallicity of the underlying/neighbour stellar populations. We confirm known relations between properties of the HII regions and the underlying stellar populations (in particular with the age) uncovered using data of lower spatial and spectral resolution. Furthermore, we describe the existence of two main families of diffuse ionized gas different for galaxies host or not of HII region, Comment: Submitted for publishing in MNRAS, 2O pages, 13 figures

Using the largest sample of galaxies observed with an optical integral field unit (IFU, the SDSS-IV MaNGA survey, $\sim$10000 targets), we derive the radial distribution of the physical properties obtained from the stellar continuum and the ionized-gas emission lines. Given the large sample, we are able to explore the impact of the total stellar mass and morphology by averaging those radial distributions for different bins of both global properties. We use a piece-wise analysis to characterize the slopes of the gradients from those properties at different galactocentric distances. In general we find that most of the properties -- derived from both the stellar continuum and the ionized gas emission lines -- exhibit a negative gradient with a secondary impact by global properties such as the total stellar mass or morphology. Our results confirm the intimate interplay between the properties of the stellar component and those of the ionized gas at local (kpc) scales in order to set the observed gradients. Furthermore, the resemblance of the gradients for similar global properties (in particular for the stellar parameters) indicates statistical similar histories of star formation and chemical enrichment with an initial radial gas distribution following the potential of the galaxy., Comment: 58 pages. 59 Figures. Submitted to the RMxAA

We present a new code named pyHIIextractor, which detects and extracts the main features (positions and radii) of clumpy ionized regions, i.e. candidate HII regions, using H{\alpha} emission line images. Our code is optimized to be used on the dataproducts provided by the Pipe3D pipeline (or dataproducts with such a format), applied to high spatial resolution Integral Field Spectroscopy data (like that provided by the AMUSING++ compilation, using MUSE). The code provides the properties of both the underlying stellar population and the emission lines for each detected H ii candidate. Furthermore, the code delivers a novel estimation of the diffuse ionized gas (DIG) component, independent of its physical properties, which enables a decontamination of the properties of the HII regions from the DIG. Using simulated data, mimicking the expected observations of spiral galaxies, we characterise pyHIIextractor and its ability to extract the main properties of the H ii regions (and the DIG), including the line fluxes, ratios and equivalent widths. Finally, we compare our code with other such tools adopted in the literature, which have been developed or used for similar purposes: pyhIIexplorer, SourceExtractor, HIIphot, and astrodendro. We conclude that pyHIIextractor exceeds the performance of previous tools in aspects such as the number of recovered regions and the distribution of sizes and fluxes (an improvement that is especially noticeable for the faintest and smallest regions). pyHIIextractor is therefore an optimals tool to detect candidate HII regions, offering an accurate estimation of their properties and a good decontamination of the DIG component., Comment: Submitted for publishing in RASTI, 26 pages, 14 figures

Our understanding of the structure, composition and evolution of galaxies has strongly improved in the last decades, mostly due to new results based on large spectroscopic and imaging surveys. In particular, the nature of ionized gas, its ionization mechanisms, its relation with the stellar properties and chemical composition, the existence of scaling relations that describe the cycle between stars and gas, and the corresponding evolution patterns have been widely explored and described. More recently, the introduction of additional techniques, in particular Integral Field Spectroscopy, and their use in large galaxy surveys, have forced us to re-interpret most of those recent results from a spatially resolved perspective. This review is aimed to complement recent efforts to compile and summarize this change of paradigm in the interpretation of galaxy evolution. In particular we cover three particular aspects not fully covered in detail in recent reviews: (i) the spatially resolved nature of the ionization properties in galaxies and the confusion introduced by considering just integrated quantities; (ii) the nature of the global scaling relations and their relations with the spatially resolved ones; and (iii) the dependence of the radial gradients and characteristic properties of the stellar populations and ionized gas on stellar mass and galaxy morphology. To this end we replicate published results, and present novel ones, based on the largest compilation of IFS data of galaxies in the nearby universe to date., Comment: 42 pages, 16 figures, accepted for publication in RMxAA

We present a detailed exploration of the stellar mass vs. gas-phase metallicity relation (MZR) using integral field spectroscopy data obtained from ~1000 galaxies observed by the SAMI Galaxy survey. These spatially resolved spectroscopic data allow us to determine the metallicity within the same physical scale (Reff) for different calibrators. The shape of the MZ relations is very similar between the different calibrators, while there are large offsets in the absolute values of the abundances. We confirm our previous results derived using the spatially resolved data provided by the CALIFA and MaNGA surveys: (1) we do not find any significant secondary relation of the MZR with either the star formation rate (SFR) nor the specific SFR (SFR/Mass) for any of the calibrators used in this study, based on the analysis of the {individual} residuals, (2) if there is a dependence with the SFR, it is weaker than the reported one ($r_c\sim -$0.3), it is confined to the low mass regime (M*<10$^9$Msun) or high SFR regimes, and it does not produce any significant improvement in the {description of the average population of galaxies. The aparent disagreement with published results based on single fiber spectroscopic data could be due to (i) the interpretation of the secondary relation itself, (ii) the lower number of objects sampled at the low mass regime by the current study, or (iii) the presence of extreme star-forming galaxies that drive the secondary relation in previous results, Comment: 30 pages, 15 figures, accepted for publishing in MNRAS

We report the detection of a highly collimated linear emission-line structure in the spiral galaxy NGC\,232 through the use of integral field spectroscopy data from the All-weather MUse Supernova Integral field Nearby Galaxies (AMUSING) survey. This jet--like feature extends radially from the nucleus and is primarily detected in [oiii]$\lambda$5007 without clear evidence of an optical continuum counterpart. The length of the radial structure projected on sky reaches $\sim 3$ kpc, which makes NGC\,232 the second longest emission-line jet reported. The ionized gas presents extreme [Oiii]/H$\beta$ and [Nii]/H$\alpha$ line ratios, increasing along the jet-like structure. We discuss three possible scenarios to explain the observed structure: (i) direct ionization of in-falling material from the intergalactic medium by the AGN; (ii) photo-ionization by an un-detected optical counter-part of the radio jet and (iii) fast shocks ionization due to the lateral expansion of the radio jet across the ISM. Our analysis favors in-situ ionization., Comment: 7 pages, 2 figures, accepted for publishing in ApJL

We present an updated version of the mass--metallicity relation (MZR) using integral field spectroscopy data obtained from 734 galaxies observed by the CALIFA survey. These unparalleled spatially resolved spectroscopic data allow us to determine the metallicity at the same physical scale ($\mathrm{R_{e}}$) for different calibrators. We obtain MZ relations with similar shapes for all calibrators, once the scale factors among them are taken into account. We do not find any significant secondary relation of the MZR with either the star formation rate (SFR) or the specific SFR for any of the calibrators used in this study, based on the analysis of the residuals of the best fitted relation. However we do see a hint for a (s)SFR-dependent deviation of the MZ-relation at low masses (M$<$10$^{9.5}$M$_\odot$), where our sample is not complete. We are thus unable to confirm the results by Mannucci et al. (2010), although we cannot exclude that this result is due to the differences in the analysed datasets. In contrast, our results are inconsistent with the results by Lara-Lopez et al. (2010), and we can exclude the presence of a SFR-Mass-Oxygen abundance Fundamental Plane. These results agree with previous findings suggesting that either (1) the secondary relation with the SFR could be induced by an aperture effect in single fiber/aperture spectroscopic surveys, (2) it could be related to a local effect confined to the central regions of galaxies, or (3) it is just restricted to the low-mass regime, or a combination of the three effects., Comment: 22 pages, 9 figures, accepted for publishing in MNRAS

We study the galactic wind in the edge-on spiral galaxy UGC 10043 with the combination of the CALIFA integral field spectroscopy data, scanning Fabry-Perot interferometry (FPI), and multiband photometry. We detect ionized gas in the extraplanar regions reaching a relatively high distance, up to ~ 4 kpc above the galactic disk. The ionized gas line ratios ([N ii]/Ha, [S ii]/Ha and [O i]/Ha) present an enhancement along the semi minor axis, in contrast with the values found at the disk, where they are compatible with ionization due to H ii-regions. These differences, together with the biconic symmetry of the extra-planar ionized structure, makes UGC 10043 a clear candidate for a galaxy with gas outflows ionizated by shocks. From the comparison of shock models with the observed line ratios, and the kinematics observed from the FPI data, we constrain the physical properties of the observed outflow. The data are compatible with a velocity increase of the gas along the extraplanar distances up to < 400 km/s and the preshock density decreasing in the same direction. We also observe a discrepancy in the SFR estimated based on Ha (0.36 Msun/yr ) and the estimated with the CIGALE code, being the latter 5 times larger. Nevertheless, this SFR is still not enough to drive the observed galactic wind if we do not take into account the filling factor. We stress that the combination of the three techniques of observation with models is a powerful tool to explore galactic winds in the Local Universe., Comment: 14 pages, 12 figures, accepted for publishing in MNRAS

The "main sequence of galaxies" $-$ defined in terms of the total star formation rate $\psi$ vs. the total stellar mass $M_*$ $-$ is a well-studied tight relation that has been observed at several wavelengths and at different redshifts. All earlier studies have derived this relation from integrated properties of galaxies. We recover the same relation from an analysis of spatially-resolved properties, with integral field spectroscopic (IFS) observations of 306 galaxies from the CALIFA survey. We consider the SFR surface density in units of log(M$_{\odot}$ yr$^{-1}$ Kpc$^{-2}$) and the stellar mass surface density in units of log(M$_{\odot}$ Kpc$^{-2}$) in individual spaxels which probe spatial scales of 0.5-1.5 Kpc. This local relation exhibits a high degree of correlation with small scatter ($\sigma = 0.23$ dex), irrespective of the dominant ionisation source of the host galaxy or its integrated stellar mass. We highlight: $(i)$ the integrated star formation main sequence formed by galaxies whose dominant ionisation process is related to star formation, for which we find a slope of 0.81 $\pm 0.02$; (ii) the spatially-resolved relation obtained with the spaxel analysis, we find a slope of 0.72 $\pm 0.04$; (iii) for the integrated main sequence we identified also a sequence formed by galaxies that are dominated by an old stellar population, which we have called the retired galaxies sequence., Comment: 5 pages, 2 figures. Recommended for publication in ApJ letters

We present Pipe3D, an analysis pipeline based on the FIT3D fitting tool, devel- oped to explore the properties of the stellar populations and ionized gas of Integral Field Spectroscopy data. Pipe3D was created to provide with coherent, simple to distribute, and comparable dataproducts, independently of the origin of the data, focused on the data of the most recent IFU surveys (e.g., CALIFA, MaNGA, and SAMI), and the last generation IFS instruments (e.g., MUSE). Along this article we describe the different steps involved in the analysis of the data, illustrating them by showing the dataproducts derived for NGC 2916, observed by CALIFA and P-MaNGA. As a practical use of the pipeline we present the complete set of dataproducts derived for the 200 datacubes that comprises the V500 setup of the CALIFA Data Release 2 (DR2), making them freely available through the network (ftp://ftp.caha.es/CALIFA/dataproducts/DR2/Pipe3D). Finally, we explore the hypothesis that the properties of the stellar populations and ionized gas of galaxies at the effective radius are representative of the overall average ones, finding that this is indeed the case., Comment: 53 pages, 17 figures, accepted for publishing in RevMxAA

We present an improved version of FIT3D, a fitting tool for the analysis of the spectroscopic properties of the stellar populations and the ionized gas derived from moderate resolution spectra of galaxies. FIT3D is a tool developed to analyze Integral Field Spectroscopy data and it is the basis of Pipe3D, a pipeline already used in the analysis of datasets like CALIFA, MaNGA, and SAMI. We describe the philosophy behind the fitting procedure, and in detail each of the different steps in the analysis. We present an extensive set of simulations in order to estimate the precision and accuracy of the derived parameters for the stellar populations. In summary, we find that using different stellar population templates we reproduce the mean properties of the stellar population (age, metallicity, and dust attenuation) within ~0.1 dex. A similar approach is adopted for the ionized gas, where a set of simulated emission- line systems was created. Finally, we compare the results of the analysis using FIT3D with those provided by other widely used packages for the analysis of the stellar population (Starlight, Steckmap, and analysis based on stellar indices) using real high S/N data. In general we find that the parameters for the stellar populations derived by FIT3D are fully compatible with those derived using these other tools., Comment: 35 pages, 18 figures, accepted for publishing in RevMexA&A