50 results on '"L. Saber"'
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2. Sertraline: Theoretical Studies and a New Potentiometric PVC Membrane Sensor for its Determination
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Amr L. Saber, Burak Tuzun, Hussain Alessa, and Jalal T. Althakafy
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Analytical Chemistry - Abstract
Background: Sertraline (ST) hydrochloride is an anti-depressant of the selective serotonin reuptake inhibitor (SSRI) class. Potentiometric sensors are an appealing route for detecting drugs due to some advantages in terms of sensitivity, feasibility, selectivity, fast response, tolerance to turbidity and colour of solutions, and cost-effectiveness. Methods: A mixture of polyvinyl chloride powder (PVC) with o-nitrophenyl octyl ether and the ion association complex was dissolved in tetrahydrofuran (THF) to prepare the membrane for the proposed sensor. The sensor was calibrated and then electrochemically used for detecting ST in pharmaceutical samples. Results: The near Nernstian response was observed for a concentration of 1.0 x 10-8 – 1.0 x 10-2 mol L-1 with 58.62 mV as a slope per concentration decade. This direct potentiometric measurement resulted in average recoveries of 96.0 ± 0.2%. Moreover, good selectivity for sertraline with respect to many inorganic and organic cations was observed. Conclusion: The proposed sensor was simple to use and produced accurate and precise results. The molecule's chemical and biological activities were revealed using theoretical calculations. Regarding the chemical activities, calculations were made on the 3-21g and 6-31g while the SDD bases were set at B3LYP, HF, and the M062X level. Molecular docking calculations were designed against cancer proteins in order to have details regarding the molecule's biological activity.
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- 2023
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3. Gene Environment Interaction in Chronic Obstructive Pulmonary Disease: Involvement of a Nicotinic Receptor Gene Polymorphism
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L. Massara, G. Kervoaze, A. Ollivier, M. Pichavant, L. Saber - Cherif, S. Pons, U. Maskos, V.C.R. Dormoy, and P. Gosset
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- 2023
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4. Gene environment interaction in COPD: Involvement of a nicotinic receptor gene polymorphism
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L. Massara, L. Saber Cherif, S. Pons, G. Kervoaze, A. Ollivier, M. Pichavant, V. Dormoy, U. Maskos, P. Gosset, Centre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 (CIIL), Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille)-Centre National de la Recherche Scientifique (CNRS), Pathologies Pulmonaires et Plasticité Cellulaire - UMR-S 1250 (P3CELL), Université de Reims Champagne-Ardenne (URCA)-Institut National de la Santé et de la Recherche Médicale (INSERM), Neurobiologie intégrative des Systèmes cholinergiques / Integrative Neurobiology of Cholinergic Systems (NISC), and Institut Pasteur [Paris] (IP)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
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Pulmonary and Respiratory Medicine ,[SDV]Life Sciences [q-bio] - Abstract
International audience
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- 2022
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5. Impact of rs16969968 polymorphism (SNPα5) on epithelial differentiation in COPD patients
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L SABER CHERIF, Z Diabasana, J Perotin, J Ancel, P Gosset, U Maskos, G Deslée, and V Dormoy
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- 2022
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6. Spectrophotometric determination of Mercury(II) ions in laboratory and Zamzam water using bis Schiff base ligand based on 1,2,4-Triazole-3,5-diamine and o-Vaniline
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Layla Alzahrani, Hoda A. El-Ghamry, Amr L. Saber, and Gharam I. Mohammed
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General Chemical Engineering ,General Chemistry - Published
- 2023
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7. Impact du SNPα5 (rs16969968) sur la ciliogenèse de l’épithélium respiratoire dans la BPCO
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L. Saber Cherif, Z. Diabasana, J.M. Perotin, J. Ancel, M. Polette, G. Deslée, and V. Dormoy
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Pulmonary and Respiratory Medicine - Published
- 2022
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8. Characterization of Palladium Chelates and Their Interactions with Z-N'-(Benzo(d)Thiazol-2-yl)-N,N-Dimethylformimidamide using the Spectrophotometric and Computational Methods
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Wael A. Zordok, Amr L. Saber, Abdu Subaihi, and Ahmed Alharbi
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chemistry.chemical_classification ,biology ,010401 analytical chemistry ,Supramolecular chemistry ,Evisa ,chemistry.chemical_element ,02 engineering and technology ,General Chemistry ,021001 nanoscience & nanotechnology ,biology.organism_classification ,01 natural sciences ,Biochemistry ,Medicinal chemistry ,0104 chemical sciences ,Coordination complex ,chemistry ,GEOBASE ,FLUIDEX ,Drug Discovery ,Theoretical chemistry ,Environmental Chemistry ,Chelation ,0210 nano-technology ,Palladium - Abstract
A rapid, selective and sensitive method for the quantification of Pd (II) using spectrophotometric technique associated with Z-N'-(benzo(d) thiazol-2-yl)-N,N-dimethylformimidamide BTDF as new chelating agent is described. Yellow colored complex of Pd (II) with BTDF is formed in Britton-Robinson universal buffer of pH 9 and extracted with chloroform. The formed complex clearly illustrate an absorption at ∼384 nm and follw Beer’s law in the range of concentration between 0.5–18.0 µg ml−1 of Pd (II) with absorbance of 3.62 × 104 L mol-1 cm-1 and limit of detection(LOD) of Pd (II) 0.07 µg ml−1. The effects of different experimental parameters have been established by study the optimum conditions for the extraction and quantification of palladium ion. Density functional theory (DFT) havealso been employed to computethe influence of the cation on theoretical parameters of Pd2+ complexes. The effect of donating centers was investigated theoretically which prove that Pd2+ favor coordinated with two molecules of Z-N'-(benzo(d)thiazol-2-yl)-N,N-dimethylformimidamide through two nitrogen atoms.The performance of the examined method was estimated to detect the impact of current method over the presented methods in the literature without interference effect of cations and anions. The examined method has successfully demonstrated the quantification of Pd(II) in natural and spiked water samples.
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- 2019
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9. Liquid chromatographic and potentiometric methods for deteminations of clopidogrel
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Alaa Alside Amin, H. M. Killa, Mohmed Alaa Elmosallamy, and Amr L. Saber
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Pharmacology ,0303 health sciences ,Chromatography ,030309 nutrition & dietetics ,Formic acid ,010401 analytical chemistry ,Potentiometric titration ,Phthalate ,Ether ,01 natural sciences ,Diluent ,0104 chemical sciences ,03 medical and health sciences ,chemistry.chemical_compound ,chemistry ,Ammonium formate ,Acetonitrile ,Selectivity ,Food Science - Abstract
Two different techniques are developed for the determination of clopidogrel in pharmaceutical preparations. HPLC method has been developed where chromatographic analysis is performed on Nova-Pak(superscript ®) C18 column (3.9 mm×150 mm, 5 μm) with an ammonium formate buffer adjusted with formic acid to pH 4.0, acetonitrile (40:60, v/v) as mobile phase, and detection at 225 nm. Good linearity (0.9993, r), accuracy (≥99.20%) and precision (≤0.6 RSD) were obtained. Potentiometric measurments are based on tetrakis (p-chlorophenyl) borate-clopidogrel ion-pair as an electroactive material incorporating a plasticized PVC membrane with o-nitrophenyl octyl ether or dioctyl phthalate. The sensor is conditioned for at least two days in 0.1 M drug solution before use. It exhibits fast and stable Nernstian response for clopidogrel over the concentration range of 1.0×10^(-5)~1.0×10^(-2) M and pH range of 1.5-4.0. Results with an average recovery of 100.6% and a mean standard deviation of 0.86% of the nominal were obtained. The sensor shows reasonable selectivity towards clopidogrel hydrogen sulphate in presence of many cations. No significant interferences are caused by drug excipients and diluents.
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- 2020
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10. Up‐to‐date studies regarding the determination of melatonin by chromatographic methods
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Amr L. Saber, Hussain Alessa, and Jalal T. Althakafy
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Drug ,Chromatography ,Chemistry ,media_common.quotation_subject ,Dietary supplement ,Pharmaceutical Science ,Food and drug administration ,Melatonin ,Structure-Activity Relationship ,Capillary electrophoresis ,Pharmaceutical Preparations ,Drug Discovery ,medicine ,Animals ,Humans ,Gas chromatography ,Chromatography, High Pressure Liquid ,Chromatography, Liquid ,media_common ,medicine.drug - Abstract
Melatonin is an indolic compound that has been reported in the literature to exist in human-based samples, vertebrates, vegetables, fruits, and pharmaceutical products. Melatonin is considered a dietary supplement and can regulate circadian rhythms, although it has not been classified as a drug by the US Food and Drug Administration. Several analytical methods have been used for its detection. This study aimed to summarize the recent outcomes of the chromatographic methods such as electrophoretic methods, gas chromatography, and liquid chromatography, which have been used for the determination of melatonin in the last three decades, with the focus on gas chromatography and high-performance liquid chromatography methods.
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- 2021
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11. Ni(II)-selective PVC membrane sensor based on 1,2,4-triazole bis Schiff base ionophore: Synthesis, characterization and application for potentiometric titration of Ni2+ ions against EDTA
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Jalal T. Althakafy, Gharam I. Mohammed, Hussain Alessa, Hoda A. El-Ghamry, and Amr L. Saber
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Electrode ,General Chemical Engineering ,Inorganic chemistry ,Potentiometric titration ,Ionophore ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,chemistry.chemical_compound ,1,2,4-triazole ,Chelation ,QD1-999 ,Schiff base ,Sensors ,Ligand ,Membrane ,Schiff base ligand ,General Chemistry ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Solvent ,Chemistry ,chemistry ,0210 nano-technology ,Selectivity - Abstract
This study involves the preparation and investigation of a novel and highly selective poly(vinyl chloride)-based membrane of 2-((5-(2-hydroxy-3-methoxybenzylideneamino)-2H-1,2,4-triazol-3-ylimino)methyl)-6-methoxyphenol Schiff base ligand (HMBT), which is a neutral ionophore with sodium tetraphenyl borate (STB) in the form of an excluder and o-nitrophenyloctyl ether (o-NPOE) in the form of solvent mediators (plasticizing) as a Ni(II)-selective electrode. The observation of optimal performance was done wherein the membrane was shown to have the HMBT–PVC–NPOE-STB composition of 4:32:63:1.It worked effectively across a broad range of concentration (1.0 × 10−8 to 1.0 × 10−2 mol L−1). Meanwhile, the Nernstian slope was recorded as 29.3 mV per decade of activity between pH 3.0 and 8.0. The response time of this electrode was fast at 11 s which was used for a span of 100 days with sound reproducibility. According to the selectivity coefficients for trivalent, divalent, and monovalent cations, excellent selectivity was indicated for Ni(II) ions across a large number of citations, whereas no interference was caused by anions like PO43-, SO42− and Cl−. The proposed method in this study was applied successfully to determine Ni(II) content in different samples of water, obtaining suitable recoveries. Additionally, the probed sensor is utilized as indicator electrode when considering Ni2+ ion potentiometric titration against EDTA. In addition, the chelate’s geometry and structure of the complex formed between Ni2+ ions and HMBT, abbreviated as HMBT-Ni2, was evaluated by separating the solid product. Complex structure was confirmed based on alternative analytical and spectral methods to be structured in the bimetallic form with the formula [Ni2(HMBT)(H2O)2 Cl2]. The diamagnetic nature of the complex, which was concluded from the room temperature magnetic moment measurement combined with the UV-Vis measurement, suggested the square planar geometry around the Ni centers.
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- 2021
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12. Rapid, sensitive, and selective copper (II) determination using sensitive chromogenic azo dye based on sulfonamide
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Gharam I. Mohammed, Hoda A. El-Ghamry, and Amr L. Saber
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Detection limit ,Aqueous solution ,Ligand ,Chromogenic ,Potentiometric titration ,Ionophore ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Copper ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,Analytical Chemistry ,chemistry ,Electroanalytical method ,0210 nano-technology ,Instrumentation ,Spectroscopy ,Nuclear chemistry - Abstract
A simple methods have been developed for determination of Cu(II) ions in aqueous solutions. The spectrophotometric method relied mainly on the reaction between Cu(II) ions and the azo dye ligand named N-diaminomethylene-4-(2,4-dihydroxy-phenylazo)-benzenesulfonamide (H2L) at pH 10.0. The influence of parameters such as concentration, pH and reaction time were inspected. A linear relationship (R2 = 0.9992) between absorbance and the concentration of Cu(II) was obtained at the maximum absorption peak of 474 nm within 1.6–9.6 × 10−6 mol L−1 concentration range. The limit of detection for Cu(II) ion and limit of quantitation were 1.1 × 10−7 mol L−1 and 3.7 × 10−7 mol L−1, respectively. The potentiometric method is based on a novel poly(vinyl chloride) membrane, containing the synthesized azo dye as an ionophore, was used to developed a Cu(II)- selective sensor. This newly developed sensor revealed a Nernstian response over Cu2+ ion in a concentration range 1.0 × 10−6–1.0 × 10−2 mol L−1 with cationic slopes of 29.5 ± 0.2 mV decade−1 and detection limits of 3.0 × 10−6 mol L−1 copper(II) for o-nitrophenyl-octyl ether (o-NPOE) based membrane sensor. The electrode showed good discrimination toward Cu2+ ions with respect to most common cations. The advantages of the proposed methods are their simplicity, selectivity, and high sensitivity. In addition, the sensor has been used as indicator electrode in the potentiometric titration of Cu2+ ion against EDTA. The structure and geometry of the complex formed between Cu(II) and H2L ligand was identified via isolation of the solid complex; Co(II) an Ni(II) complexes were synthesized as well. The geometrical structure around the metal centers were proved to be square planar for Cu(II) complex and tetrahedral for Co(II) an Ni(II) complexes.
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- 2021
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13. Recognition and Quantification of Some Monoamines Neurotransmitters
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Mohamed A. F. Elmosallamy and Amr L. Saber
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Detection limit ,Chromatography ,Chemistry ,010401 analytical chemistry ,Potentiometric titration ,Analytical chemistry ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Matrix (chemical analysis) ,chemistry.chemical_compound ,Epinephrine ,Monoamine neurotransmitter ,Dopamine ,Electrochemistry ,medicine ,Serotonin ,0210 nano-technology ,Neurotransmitter ,medicine.drug - Abstract
Three neurotransmitter sensors for dopamine, serotonin, and epinephrine have been developed. Potentiometric sensors for serotonin and epinephrine are novel and first to be introduced. The neurotransmitter potentiometric sensors are based on using dibenzo-30-crown-10 (DB30C10), dibenzo-24-crown-8 (DB24C8), and dibenzo-18-crown-6 (DB18C6) as ionophores and neutral carriers incorporating in poly(vinyl chloride) matrix membrane plasticized with o-nitrophenyl octyl ether. Sensors based on dibenzo-30-crown-10 show good responses for the dopamine, serotonin, and epinephrine (Type I–III, respectively) with a cationic slope of 57.9 mV decade−1 and detection limit of 4.0×10−5 mol L−1 dopamine, cationic slope of 55.9 mV decade−1 and detection limit of 4.0×10−5 mol L−1 serotonin, and cationic slope of 54.4 mV decade−1 and detection limit of 2.0×10−5 mol L−1 epinephrine. The sensors based on DB24C8 and DB18C6 (Types IV–IX) show poor responses in terms of calibration range and slope. The effect of the interferents on the response of the sensors reveals a high selectivity for the neurotransmitters over many inorganic cations, ascorbic and uric acids. The useful pH range for the three sensors is 3–7, the response time is fast (11 s), and the life span is long (2.5 months). Sensors (Types I and III) are successfully used for the quantification of dopamine and adrenaline in pharmaceutical preparations.
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- 2016
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14. Novel Ionophore for Aluminum Ion Sensors: Synthesis and Analytical Characterization
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Amr L. Saber and Abd El-Shafey I. Ahmed
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Chemistry ,010401 analytical chemistry ,Potentiometric titration ,Ionophore ,Cationic polymerization ,Analytical chemistry ,Ether ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Ion ,chemistry.chemical_compound ,Malonate ,Electrode ,Electroanalytical method ,Electrical and Electronic Engineering ,Instrumentation - Abstract
A new and rapid potentiometric method to quantify aluminum ions concentration was developed. The method involves the development of an aluminum ion sensor with a membrane consists of diethyl (2-azobenzoic acid) malonate (DAM) as a novel ionophore in poly (vinyl chloride) matrix membrane plasticized with orthonitrophenyl-octyl ether or dioctylphthalate. The structure of the synthesized ionophore (DAM) was identified using Fourier transform infrared, 1H Nuclear magnetic resonance, and elemental analysis. The proposed electrode reveals a Nernstian response over Al3+ ion in a concentration range $1\times 10^{\mathrm {-7}}$ – $1\times 10^{\mathrm {-2}}$ mol $\text{L}^{\mathrm {-1}}$ with the cationic slopes of 19.6 ± 0.3 and 19.3 ± 0.2 mV decade $^{\mathrm {-1}}$ , and the limits of detection $5 \times 10^{\mathrm {-8}}$ and $7 \times 10^{\mathrm {-8}}$ mol $\text{L}^{\mathrm {-1}}$ aluminum(III) for orthonitrophenyl-octyl ether and dioctylphthalate-based membrane sensors, respectively. The electrodes showed good discrimination toward Al3+ ion in the presence of the most common cations. The electrodes show response in a short time (10 s) for the entire concentration range and used for 11 weeks without significant variation in potentials. To evaluate the application of the investigated electrodes was used to determine Al3+ ion at different collected samples from environmental sources. In addition, these sensors have been used as indicator electrodes in the potentiometric titration of Al3+ ion against Ethylenediaminetetraacetic acid.
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- 2016
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15. New Potentiometric Sensor for the Determination of Bromate Ion in Drinking Water
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Amr L. Saber
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Detection limit ,Ammonium bromide ,010401 analytical chemistry ,Inorganic chemistry ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Bromate ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,Ion ,chemistry.chemical_compound ,chemistry ,Electrode ,Electrochemistry ,Rhodamine B ,Potentiometric sensor ,0210 nano-technology ,Selectivity - Abstract
The characteristics, performance and application of ion-selective electrodes for bromate ion based on rhodamine B and tetrahexyl ammonium bromide as electrode-active substances are described for the first time. These electrodes respond with sensitivities of (58.0±1.0) and (61.0±2.0) mV decade−1 over the range 1.0×10−8–1.0×10−2 mol l−1 at pH 4–9 and 4–8 and a detection limit of 6.0×10−8 and 4.0×10−8 mol l−1 for rhodamine B and tetrahexyl ammonium bromide sensors, respectively. The electrodes are easily constructed at a relatively low cost, have a fast response time and can be used for a period of 3 months without any considerable divergence in potential. The proposed sensors displayed good selectivity for bromate ion in the presence of several substances and inorganic anions. Sensors were used for the direct assay of bromate ion in drinking water samples.
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- 2015
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16. A PVC Membrane Sensor for Potentiometric Determination of Atorvastatin in Biological Samples and Pharmaceutical Preparations
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Amr L. Saber
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Chromatography ,Atorvastatin ,High selectivity ,Potentiometric titration ,Diluent ,Vinyl chloride ,Analytical Chemistry ,Matrix (chemical analysis) ,chemistry.chemical_compound ,Membrane ,chemistry ,Human plasma ,Electrochemistry ,medicine ,medicine.drug - Abstract
The present article reports for the first time the use of Aliquat 336S-atorvastatin as an electroactive material in a poly(vinyl chloride) matrix membrane sensor plasticized with ortho-nitrophenyl-octylether (o-NPOE) or dioctylphthalate (DOP) for determination of atorvastatin in biological samples (human plasma) and in pharmaceutical preparations. The sensor shows fast, stable and reproducible response over the concentration range of 1.0×10−7–1.0×10−2 mol L−1 atorvastatin with anionic slopes of 60.94±0.2 and 58.22±0.2 and pH range of 5.0–9.0 for o-NPOE and DOP plasticized based membrane sensors, respectively. The response time of the sensor is stable and fast (10 s). Results were achieved with average recoveries of 99.5 % and 99.3 % and mean standard deviations of ±1.1 % and ±1.4 % for o-NPOE and DOP plasticized based membrane sensors, respectively. The sensor exhibits high selectivity towards atorvastatin in the presence of many anions, drug excipients and diluents. Validation of the method according to the quality assurance standards shows suitability of the proposed sensors for use in the quality control assessment of the drug.
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- 2013
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17. Selective potentiometric method for determination of flucloxacillin antibiotic
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Mohmed Alaa Elmosallamy, Mohmed M. Ghoneim, H. M. Killa, and Amr L. Saber
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Chromatography ,010405 organic chemistry ,Chemistry ,010401 analytical chemistry ,High selectivity ,01 natural sciences ,Diluent ,Flucloxacillin ,0104 chemical sciences ,Matrix (chemical analysis) ,Poly vinyl chloride ,Aliquat 336S-flucloxacillin ion pair ,Membrane ,Potentiometry ,Electroanalytical method ,medicine ,Pharmaceutical analysis ,medicine.drug - Abstract
A new and rapid potentiometric method for determination of flucloxacillin is developed. The method involves development of a flucloxacillin sensor with a membrane consisting of Aliquat 336S-flucloxacillin as an electroactive material in poly vinyl chloride matrix membrane plasticized with orthonitrophenyl-octylether or dioctylphthalate. The sensor shows fast, stable and reproducible response over the concentration range of 1.0 × 10 −5 –1.0 × 10 −2 M flucloxacillin with anionic slopes of 60.7 ± 0.3 and 61.2 ± 0.2 and pH ranges of 6–11 and 7–11 for o -nitrophenyloctylether ( o -NPOE) and dioctylphthalate (DOP) plasticized based membrane sensors, respectively. The response time of the sensor is stable and fast (7 s). The sensor exhibits high selectivity towards flucloxacillin in presence of amoxicillin, ampicillin, dicluxacillin, pencillin, many anions and drug excipients and diluents. Validation of the method according to the quality assurance standards shows suitability of the proposed sensors for use in the quality control assessment of the drug. Results with average recoveries of 99.6% and 99.7% and mean standard deviations of ±1.2% and ±1.5% for o -NPOE and DOP plasticized based membrane sensors, respectively, of the nominal are obtained which compare fairly well with data obtained using the British Pharmacopoeia method.
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- 2013
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18. Potential of semiarid soil from Caatinga biome as a novel source for mining lignocellulose-degrading enzymes
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Gileno Vieira Lacerda Júnior, Irian L. Saber, Lucélia Cabral, Melline F. Noronha, Valéria Maia de Oliveira, Daniela Ferreira Domingos, Itamar Soares de Melo, and Sanderson Tarciso Pereira de Sousa
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0301 basic medicine ,Glycoside Hydrolases ,Biome ,030106 microbiology ,Biology ,Applied Microbiology and Biotechnology ,Microbiology ,Lignin ,03 medical and health sciences ,Soil ,Proteobacteria ,Animals ,Biomass ,Cellulose ,Phylogeny ,Soil Microbiology ,chemistry.chemical_classification ,Ecology ,Hydrolysis ,Microbiota ,Actinobacteria ,030104 developmental biology ,Enzyme ,chemistry ,Biofuels ,Brazil - Abstract
The litterfall is the major organic material deposited in soil of Brazilian Caatinga biome, thus providing the ideal conditions for plant biomass-degrading microorganisms to thrive. Herein, the phylogenetic composition and lignocellulose-degrading capacity have been explored for the first time from a fosmid library dataset of Caatinga soil by sequence-based screening. A complex bacterial community dominated by Proteobacteria and Actinobacteria was unraveled. SEED subsystems-based annotations revealed a broad range of genes assigned to carbohydrate and aromatic compounds metabolism, indicating microbial ability to utilize plant-derived material. CAZy-based annotation identified 7275 genes encoding 37 glycoside hydrolases (GHs) families related to hydrolysis of cellulose, hemicellulose, oligosaccharides and other lignin-modifying enzymes. Taxonomic affiliation of genes showed high genetic potential of the phylum Acidobacteria for hemicellulose degradation, whereas Actinobacteria members appear to play an important role in celullose hydrolysis. Additionally, comparative analyses revealed greater GHs profile similarity among soils as compared to the digestive tract of animals capable of digesting plant biomass, particularly in the hemicellulases content. Combined results suggest a complex synergistic interaction of community members required for biomass degradation into fermentable sugars. This large repertoire of lignocellulolytic enzymes opens perspectives for mining potential candidates of biochemical catalysts for biofuels production from renewable resources and other environmental applications.
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- 2016
19. Dual Biomarkers of Anaerobic Hydrocarbon Degradation in Historically Contaminated Groundwater
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Diane. L. Saber, Xiangyang Zhu, Lily Y. Young, Amita. R. Oka, and Craig D. Phelps
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Fresh Water ,Polymerase Chain Reaction ,law.invention ,chemistry.chemical_compound ,Denitrifying bacteria ,law ,RNA, Ribosomal, 16S ,Environmental Chemistry ,Anaerobiosis ,Water pollution ,Polymerase chain reaction ,Naphthalene ,biology ,Chemistry ,General Chemistry ,Biodegradation ,biology.organism_classification ,Hydrocarbons ,Biodegradation, Environmental ,Genes, Bacterial ,Environmental chemistry ,Benzylsuccinate synthase ,biology.protein ,Anaerobic exercise ,Biomarkers ,Water Pollutants, Chemical ,Bacteria ,Environmental Monitoring - Abstract
This study reports that ongoing in situ anaerobic hydrocarbon biodegradation at a manufactured gas plant impacted site is occurring, 9 years after the initial investigation. Groundwater samples from the site monitoring wells (MW) were analyzed for biomarkers by GC-MS, end-point PCR, and quantitative PCR (qPCR). Metabolic biomarkers included specific intermediates of anaerobic naphthalene and/or 2-methylnaphthalene degradation: 2-naphthoic acid (2-NA); 5,6,7,8-tetrahydro-2-NA (TH-2-NA); hexahydro-2-NA (HH-2-NA); and carboxylated-2-methylnaphthalene (MNA). The analogues of gene bssA, encoding alpha subunit of enzyme benzylsuccinate synthase, were used as a genetic biomarker. Results indicate 1-2 orders of magnitude higher abundance of total bacteria in the impacted wells than in the unimpacted wells. End-point PCR analysis of bssA gene, with degenerate primers, indicated the presence of hydrocarbon degrading bacteria within the plume. In qPCR analysis, using primers based on toluene-degrading denitrifying or sulfate-reducing/methanogenic bacteria, bssA genes were detected only in MW-24, located downstream from the source. Metabolic biomarkers were detected in multiple wells. The highest abundance of 2-NA (6.7 μg/L), TH-2-NA (2.6 μg/L), HH-2-NA, and MNA was also detected in MW-24. The distribution of two independent biomarkers indicates that the site is enriched for anaerobic hydrocarbon biodegradation and provides strong evidence in support of natural attenuation.
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- 2011
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20. Novel Potentiometric Sensors for Determination of Melatonin and Oxomemazine in Biological Samples and in Pharmaceutical Formulations
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Amr L. Saber
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Chromatography ,Chemistry ,Potentiometric titration ,Phthalate ,Ether ,Analytical Chemistry ,Melatonin ,Electroactive materials ,chemistry.chemical_compound ,Membrane ,Oxomemazine ,Electrochemistry ,medicine ,Selectivity ,medicine.drug - Abstract
Simple, selective and accurate sensors were developed for the determination of melatonin and oxomemazine in biological samples (urine) and in pharmaceutical preparations. Potentiometric measurements were based on bismus tetraiodate-drug ion-pair as novel electroactive materials incorporating a plasticized PVC membrane with o-nitrophenyl octyl ether or dioctyl phthalate. Each sensor was conditioned for at least two days in 0.1 M drug solution before use. It exhibited fast and stable Nernstian response for melatonin and oxomemazine over the concentration range of 1.0×10−6–1.0×10−2 M and 1.0×10−5–1.0×10−2 M, pH range of 3.0–6.5 and 3.5–6.0 for melatonin and oxomemazine sensors, respectively. Results with an average recovery not more than 101 % and a mean standard deviation less than 1.0 % of the nominal were obtained for the four sensors. The sensors showed reasonable selectivity towards investigated drugs in presence of many cations.
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- 2010
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21. On-line solid phase extraction coupled to capillary LC-ESI-MS for determination of fluoxetine in human blood plasma
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Amr L. Saber
- Subjects
Male ,Spectrometry, Mass, Electrospray Ionization ,Analyte ,Chromatography ,Chemistry ,Solid Phase Extraction ,Extraction (chemistry) ,Analytical chemistry ,Reversed-phase chromatography ,Analytical Chemistry ,Fluoxetine Hydrochloride ,Liquid–liquid extraction ,Fluoxetine ,Humans ,Sample preparation ,Solid phase extraction ,Quantitative analysis (chemistry) ,Chromatography, Liquid - Abstract
An instrumental setup including on-line solid phased extraction coupled to capillary liquid chromatography-electrospray ionization-mass spectrometry (SPE-capLC-ESI-MS) has been constructed to improve the sensitivity for quantification of fluoxetine hydrochloride in human plasma. Prior to injection, 0.5 mL of plasma spiked with metronidazole (internal standard) was mixed with ammonium formate buffer for effective chloroform liquid-liquid extraction. The method was validated in the range 5-60 ng mL(-1) fluoxetine, yielding a correlation coefficient of 0.999 (r(2)). The within-assay and between-assay precisions were between (8.5 and 11%) and (6.6 and 7.5%), respectively. The method was used to determine the amount of fluoxetine in a healthy male 14 h after an intake of one capsule of the antidepressant and anorectic Flutin, which contains 20mg fluoxetine per each capsule. Fluoxetine was detected, and the concentration was calculated to 9.0 ng mL(-1) plasma. In the preliminary experiments, conventional LC-UV instrumentation was employed. However, it was found that employing a capillary column with an inner diameter of (0.3mm I.D. x 50 mm, Zorbax C(18)) increased the sensitivity by a factor of approximately 100, when injecting the same mass of analyte. Incorporating an easily automated C(18) reversed phase column switching system with SPE (1.0mm I.D. x 5.0mm, 5 microm) made it possible to inject up to 100 microL of solution, and the total analysis time was 5.5 min.
- Published
- 2009
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- View/download PDF
22. Three Spectrophotometric Methods for the Determination of Oxomemazine Hydrochloride in Bulk and in Pharmaceutical Formulations Using Bromocresol Green, Congo Red, and Methyl Orange
- Author
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Amr L. Saber, Alaa S. Amin, Mohamed A. El‐Mossalamy, and H. M. Killa
- Subjects
Bromocresol green ,Chromatography ,medicine.diagnostic_test ,Hydrochloride ,Biochemistry (medical) ,Clinical Biochemistry ,Biochemistry ,Dosage form ,Analytical Chemistry ,Congo red ,chemistry.chemical_compound ,chemistry ,Spectrophotometry ,Methyl red ,Electrochemistry ,medicine ,Methyl orange ,Spectroscopy ,Triarylmethane dye - Abstract
Three simple, sensitive, and highly accurate spectrophotometric methods have been developed for the determination of oxomemazine hydrochloride (OXO‐HCl) in bulk and in pharmaceutical formulations. These methods are based on the formation of yellow ion‐pair complexes between the examined drug and bromocresol green (BCG), congo red (CR), and methyl orange (MO) as reagents in universal buffer solution of pH 3.0, 5.5, and 3.5, respectively. The formed complexes were extracted with chloroform and measured at 413, 495, and 484 nm, respectively for the three systems. The best conditions of the reaction were studied and optimized. Beer's law was obeyed in the concentration ranges 2.0–18.0, 2.0–14.0, and 2.0–16.0 µg ml−1 with molar absorptivity of 4.1×104, 1.1×104, and 3.5×104 mol−1cm−1, for the BCG, CR, and MO methods, respectively. Sandell's sensitivity, correlation coefficient, detection, and quantification limits are also calculated. The proposed methods have been applied successfully for the analysis...
- Published
- 2008
- Full Text
- View/download PDF
23. Determination of Oxomemazine in Human Plasma by Capillary LC‐ESI‐MS
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Amr L. Saber, Steven Ray Wilson, Tyge Greibrokk, Elsa Lundanes, and Mohamed A. F. Elmosallamy
- Subjects
Electrospray ,Chromatography ,Chemistry ,Clinical Biochemistry ,Extraction (chemistry) ,Analytical chemistry ,Pharmaceutical Science ,Biochemistry ,High-performance liquid chromatography ,Analytical Chemistry ,chemistry.chemical_compound ,Liquid chromatography–mass spectrometry ,Liquid–liquid extraction ,Reagent ,Methyl orange ,Solid phase extraction - Abstract
A method based on on‐line solid phased extraction capillary liquid chromatography‐electrospray ionization‐mass spectrometry (SPE‐capLC‐ESI‐MS) has been developed for the determination of oxomemazine in human plasma. Prior to injection, 0.5 mL of plasma spiked with metronidazole (internal standard) was mixed with ammonium formate buffer and methyl orange, which served as an ion pair reagent for effective chloroform liquid–liquid extraction. The employment of methyl orange as an ion pair reagent doubled the extraction efficiency, as compared to not using methyl orange. In preliminary experiments, conventional LC‐UV instrumentation was employed. However, it was found that employing a capillary column with an inner diameter of 0.3 mm increased the sensitivity by a factor of ∼100, when injecting the same mass of analyte. Incorporating an easily automated reversed phase column switching system with SPE made it possible to inject up to 100 µL of solution, and the total analysis time was 5 minutes. The m...
- Published
- 2007
- Full Text
- View/download PDF
24. Environmental Forensics Investigation in Sediments near a Former Manufactured Gas Plant Site
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David Mauro, Diane. L. Saber, and Tanita Sirivedhin
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chemistry.chemical_classification ,Soil test ,Chemistry ,Sediment ,Polycyclic aromatic hydrocarbon ,Management, Monitoring, Policy and Law ,law.invention ,Isotopes of carbon ,law ,Environmental chemistry ,Flame ionization detector ,Gas chromatography ,Waste Management and Disposal ,Chemical fingerprinting ,Urban runoff - Abstract
An investigation of lakebed sediment found elevated polycyclic aromatic hydrocarbon (PAH) levels, and a nearby former manufactured gas plant (MGP) site was identified as the most likely source. Forensic chemistry or “chemical fingerprinting” was conducted on sediment samples from a boat slip in the vicinity of the MGP and on-shore soil samples from the MGP property in order to determine whether or not the former MGP was the origin of the PAHs found in the sediment. An analysis of the data from gas chromatography with flame ionization detection (GC/FID) and mass spectrometry (GC/MS) suggested that the PAH distributions measured in the sediment samples were similar to those measured in samples of tarry soil from the former MGP site. However, because of the urban and industrial land use surrounding the former MGP site, it was also possible that there was a PAH contribution to the sediments from urban runoff or other industrial and municipal discharges. The compound-specific isotope ratios (CSIRs) of carbon i...
- Published
- 2006
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25. Potentiometric Membrane Sensor for Determination of Saccharin
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Mohamed M. Ghoneim, H. M. Killa, Amr L. Saber, and Mohamed A. F. Elmosallamy
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Sodium ,Potentiometric titration ,Inorganic chemistry ,chemistry.chemical_element ,Dosage form ,Vinyl chloride ,Analytical Chemistry ,chemistry.chemical_compound ,Polyvinyl chloride ,Membrane ,chemistry ,Selectivity ,Saccharin ,psychological phenomena and processes - Abstract
A potentiometric poly(vinyl chloride) membrane sensor for determination of saccharin is described. It is based on the use of Aliquat 336S-saccharinateion-pair as an electroactive material in plasticized PVC membranes with o-nitrophenyloctylether or dioctylphthalate. The sensor is conditioned for at least two days in 0.1 mol L−1 sodium saccharinate before use. It exhibits fast, stable and Nernstian response for saccharinate ions over the concentration range of 1.0 × 10−1–5.0 × 10−5 mol L−1 and pH range of 4.5–11. The sensor is used for determination of saccharin in some dosage forms. Results with an average recovery of 101% and a mean standard deviation of 0.2% are obtained which is compared favourably with data obtained using the British pharmacopoeia method. The sensor shows reasonable selectivity towards saccharin in presence of many anions and natural sweeteners.
- Published
- 2005
- Full Text
- View/download PDF
26. Applications of forensic chemistry to environmental work
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Tanita Sirivedhin, Diane. L. Saber, and David Mauro
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Flame Ionization ,Carbon Isotopes ,Chromatography, Gas ,Environmental remediation ,Chemistry ,Forensic chemistry ,Bioengineering ,Mass spectrometry ,Applied Microbiology and Biotechnology ,Gas Chromatography-Mass Spectrometry ,law.invention ,law ,Environmental chemistry ,Environmental monitoring ,Flame ionization detector ,Environmental Pollutants ,Gas chromatography ,Polycyclic Aromatic Hydrocarbons ,Gas chromatography–mass spectrometry ,Chemical fingerprinting ,Gasoline ,Environmental Monitoring ,Biotechnology - Abstract
Recent trends in environmental remediation have increasingly employed the use of environmental chemistry techniques to decipher the source(s) and fate of the contaminants and, in some cases, to determine their age or apportion them to sources. An extensive database of pyrogenic and petrogenic 'chemical fingerprints' has been constructed by the Gas Technology Institute (GTI) and META Environmental, Inc. using gas chromatography coupled with a flame ionization detector (GC/FID) or with a mass spectrometer (GC/MS). The use of these chemical fingerprinting techniques have been highly successful in discerning wastes from wholly different sources as well as among Manufactured Gas Plant (MGP)-type wastes from different plant operations. However, these techniques have been limited when low-level polycyclic aromatic hydrocarbon (PAH) discernment is required. Specifically, these techniques often do not provide data with sufficient conclusive discriminating power between the 'urban background'PAH sources and those from MGP-operations, which is pertinent for meeting low-level, stringent site-cleanup standards. GTI has been developing a new analytical method for the measurement of 'urban background' PAH contamination. This method measures the compound-specific isotope ratio (CSIR) carbon with a GC/IRMS (isotope ratio mass spectrometer). The GC/IRMS technique is a relatively new analytical tool that has great potential as an environmental forensic method at former MGP sites. This paper focuses on the applications of both chemical and isotopic analysis of samples to discern PAH contamination in the environment.
- Published
- 2005
- Full Text
- View/download PDF
27. BioRT-Flux-PIHM v1.0: a biogeochemical reactive transport model at the watershed scale
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W. Zhi, Y. Shi, H. Wen, L. Saberi, G.-H. C. Ng, K. Sadayappan, D. Kerins, B. Stewart, and L. Li
- Subjects
Geology ,QE1-996.5 - Abstract
Watersheds are the fundamental Earth surface functioning units that connect the land to aquatic systems. Many watershed-scale models represent hydrological processes but not biogeochemical reactive transport processes. This has limited our capability to understand and predict solute export, water chemistry and quality, and Earth system response to changing climate and anthropogenic conditions. Here we present a recently developed BioRT-Flux-PIHM (BioRT hereafter) v1.0, a watershed-scale biogeochemical reactive transport model. The model augments the previously developed RT-Flux-PIHM that integrates land-surface interactions, surface hydrology, and abiotic geochemical reactions. It enables the simulation of (1) shallow and deep-water partitioning to represent surface runoff, shallow soil water, and deeper groundwater and of (2) biotic processes including plant uptake, soil respiration, and nutrient transformation. The reactive transport part of the code has been verified against the widely used reactive transport code CrunchTope. BioRT-Flux-PIHM v1.0 has recently been applied in multiple watersheds under diverse climate, vegetation, and geological conditions. This paper briefly introduces the governing equations and model structure with a focus on new aspects of the model. It also showcases one hydrology example that simulates shallow and deep-water interactions and two biogeochemical examples relevant to nitrate and dissolved organic carbon (DOC). These examples are illustrated in two simulation modes of complexity. One is the spatially lumped mode (i.e., two land cells connected by one river segment) that focuses on processes and average behavior of a watershed. Another is the spatially distributed mode (i.e., hundreds of cells) that includes details of topography, land cover, and soil properties. Whereas the spatially lumped mode represents averaged properties and processes and temporal variations, the spatially distributed mode can be used to understand the impacts of spatial structure and identify hot spots of biogeochemical reactions. The model can be used to mechanistically understand coupled hydrological and biogeochemical processes under gradients of climate, vegetation, geology, and land use conditions.
- Published
- 2022
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- View/download PDF
28. Size and shape effect on the canted antiferromagnetism in α-Fe2O3 particles
- Author
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Amelia Montone, M. Polichetti, M. Angiolini, Dino Fiorani, A.M. Testa, and L. Saber
- Subjects
Acicular ,Materials science ,Morin transition ,Condensed matter physics ,Annealing (metallurgy) ,Semi-major axis ,Morin ,Condensed Matter Physics ,chemistry.chemical_compound ,Magnetization ,chemistry ,Minor axis ,Antiferromagnetism ,General Materials Science - Abstract
The effect of thermal treatments on both the Morin transition and the spin flop field (Hsf) of α-Fe2O3 acicular particles (major axis:(350 ± 50) nm; minor axis: (85 ± 15) nm.) has been investigated by means of magnetization vs temperature-magnetic field measurements. Both the Morin transition and the spin flop process have been observed only after an annealing treatment at 500 °C. Due to the finite size effect, the values of the Morin temperature and spin-flop field are significantly below the bulk value.
- Published
- 1999
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29. Study on solid phase extraction and spectrophotometric determination of vanadium with 2,3-dichloro-6-(2,7-dihydroxy-1-naphthylazo)quinoxaline
- Author
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Amr L. Saber, Alaa S. Amin, and Talaat Y. Mohammed
- Subjects
Vanadium ,chemistry.chemical_element ,Naphthalenes ,Analytical Chemistry ,chemistry.chemical_compound ,Surface-Active Agents ,Quinoxaline ,Spectrophotometry ,Quinoxalines ,medicine ,Solid phase extraction ,Instrumentation ,Spectroscopy ,Chromatography ,medicine.diagnostic_test ,Elution ,Solid Phase Extraction ,Buffer solution ,Molar absorptivity ,Hydrogen-Ion Concentration ,Atomic and Molecular Physics, and Optics ,chemistry ,Hydroxide ,Acids - Abstract
A sensitive, selective and rapid method has been developed for the determination micrograms per liter level of vanadium ion based on the rapid reaction of vanadium(V) with 2,3-dichloro-6-(2,7-dihydroxy-1-naphthylazo)quinoxaline (DCDHNAQ) and the solid phase extraction of the colored complex with C18 cartridge. The DCDHNAQ reacts with V(V) in the presence of citric acid-sodium hydroxide buffer solution (pH 3.3) and benzyldimethyl tetradecylammonium chloride (zephiramine) medium to form a violet complex of a molar ratio 1:2 [V(V) to DCDHNAQ]. This complex was enriched by solid phase extraction with C18 cartridge and the enrichment factor of 100 was obtained by elution of the complex from the cartridge with acetonitrile. The molar absorptivity and Sandell sensitivity of the complex are 2.45x10(5) L mol(-1) cm(-1) and 0.0208 ng cm(-2) at 573 nm in the measured solution. Beer's law is obeyed in the range of 0.01-0.45 microg mL(-1), whereas Ringbom optimum concentration ranges found to be 0.025-0.425 microg mL(-1). The detection and quantification limits are 3.2 and 9.9 microg L(-1), respectively in the original samples. This method was applied to the determination of vanadium(V) in steel, soil, water and biological samples with good results.
- Published
- 2008
30. Sinkholes and uvalas in evaporite karst: spatio-temporal development with links to base-level fall on the eastern shore of the Dead Sea
- Author
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R. A. Watson, E. P. Holohan, D. Al-Halbouni, L. Saberi, A. Sawarieh, D. Closson, H. Alrshdan, N. Abou Karaki, C. Siebert, T. R. Walter, and T. Dahm
- Subjects
Geology ,QE1-996.5 ,Stratigraphy ,QE640-699 - Abstract
Enclosed topographic depressions are characteristic of karst landscapes on Earth. The developmental relationship between depression types, such as sinkholes (dolines) and uvalas, has been the subject of debate, mainly because the long developmental timescales in classical limestone karst settings impede direct observation. Here we characterize the morphometric properties and spatio-temporal development of ∼1150 sinkholes and five uvalas formed from ∼1980 to 2017 in an evaporite karst setting along the eastern coast of the hypersaline Dead Sea (at Ghor Al-Haditha, Jordan). The development of sinkhole populations and individual uvalas is intertwined in terms of onset, evolution and cessation. The sinkholes commonly develop in clusters, within which they may coalesce to form compound or nested sinkholes. In general, however, the uvalas are not defined by coalescence of sinkholes. Although each uvala usually encloses several clusters of sinkholes, it develops as a larger-scale, gentler and structurally distinct depression. The location of new sinkholes and uvalas shows a marked shoreline-parallel migration with time, followed by a marked shoreline-perpendicular (i.e. seaward) growth with time. These observations are consistent with theoretical predictions of karstification controlled by a laterally migrating interface between saturated and undersaturated groundwater, as induced by the 35 m fall in the Dead Sea water level since 1967. More generally, our observations indicate that uvalas and the sinkhole populations within them, although morphometrically distinct, can develop near-synchronously by subsidence in response to subsurface erosion.
- Published
- 2019
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- View/download PDF
31. Multi-scale temporal variability in meltwater contributions in a tropical glacierized watershed
- Author
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L. Saberi, R. T. McLaughlin, G.-H. C. Ng, J. La Frenierre, A. D. Wickert, M. Baraer, W. Zhi, L. Li, and B. G. Mark
- Subjects
Technology ,Environmental technology. Sanitary engineering ,TD1-1066 ,Geography. Anthropology. Recreation ,Environmental sciences ,GE1-350 - Abstract
Climate models predict amplified warming at high elevations in low latitudes, making tropical glacierized regions some of the most vulnerable hydrological systems in the world. Observations reveal decreasing streamflow due to retreating glaciers in the Andes, which hold 99 % of all tropical glaciers. However, the timescales over which meltwater contributes to streamflow and the pathways it takes – surface and subsurface – remain uncertain, hindering our ability to predict how shrinking glaciers will impact water resources. Two major contributors to this uncertainty are the sparsity of hydrologic measurements in tropical glacierized watersheds and the complication of hydrograph separation where there is year-round glacier melt. We address these challenges using a multi-method approach that employs repeat hydrochemical mixing model analysis, hydroclimatic time series analysis, and integrated watershed modeling. Each of these approaches interrogates distinct timescale relationships among meltwater, groundwater, and stream discharge. Our results challenge the commonly held conceptual model that glaciers buffer discharge variability. Instead, in a subhumid watershed on Volcán Chimborazo, Ecuador, glacier melt drives nearly all the variability in discharge (Pearson correlation coefficient of 0.89 in simulations), with glaciers contributing a broad range of 20 %–60 % or wider of discharge, mostly (86 %) through surface runoff on hourly timescales, but also through infiltration that increases annual groundwater contributions by nearly 20 %. We further found that rainfall may enhance glacier melt contributions to discharge at timescales that complement glacier melt production, possibly explaining why minimum discharge occurred at the study site during warm but dry El Niño conditions, which typically heighten melt in the Andes. Our findings caution against extrapolations from isolated measurements: stream discharge and glacier melt contributions in tropical glacierized systems can change substantially at hourly to interannual timescales, due to climatic variability and surface to subsurface flow processes.
- Published
- 2019
- Full Text
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32. GSFLOW–GRASS v1.0.0: GIS-enabled hydrologic modeling of coupled groundwater–surface-water systems
- Author
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G.-H. C. Ng, A. D. Wickert, L. D. Somers, L. Saberi, C. Cronkite-Ratcliff, R. G. Niswonger, and J. M. McKenzie
- Subjects
Geology ,QE1-996.5 - Abstract
The importance of water moving between the atmosphere and aquifers has led to efforts to develop and maintain coupled models of surface water and groundwater. However, developing inputs to these models is usually time-consuming and requires extensive knowledge of software engineering, often prohibiting their use by many researchers and water managers, thus reducing these models' potential to promote science-driven decision-making in an era of global change and increasing water resource stress. In response to this need, we have developed GSFLOW–GRASS, a bundled set of open-source tools that develops inputs for, executes, and graphically displays the results of GSFLOW, the U.S. Geological Survey's coupled groundwater and surface-water flow model. In order to create a robust tool that can be widely implemented over diverse hydro(geo)logic settings, we built a series of GRASS GIS extensions that automatically discretizes a topological surface-water flow network that is linked with an underlying gridded groundwater domain. As inputs, GSFLOW–GRASS requires at a minimum a digital elevation model, a precipitation and temperature record, and estimates of channel parameters and hydraulic conductivity. We demonstrate the broad applicability of the toolbox by successfully testing it in environments with varying degrees of drainage integration, landscape relief, and grid resolution, as well as the presence of irregular coastal boundaries. These examples also show how GSFLOW–GRASS can be implemented to examine the role of groundwater–surface-water interactions in a diverse range of water resource and land management applications.
- Published
- 2018
- Full Text
- View/download PDF
33. Optimal Waste Load Allocation Using Multi-Objective Optimization and Multi-Criteria Decision Analysis
- Author
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L. Saberi, M.H. Niksokhan, and A. Sarang
- Subjects
MOPSO Algorithm ,Nash Bargaining Theory ,Waste Load Allocation ,Agriculture (General) ,S1-972 ,Irrigation engineering. Reclamation of wasteland. Drainage ,TC801-978 - Abstract
Introduction: Increasing demand for water, depletion of resources of acceptable quality, and excessive water pollution due to agricultural and industrial developments has caused intensive social and environmental problems all over the world. Given the environmental importance of rivers, complexity and extent of pollution factors and physical, chemical and biological processes in these systems, optimal waste-load allocation in river systems has been given considerable attention in the literature in the past decades. The overall objective of planning and quality management of river systems is to develop and implement a coordinated set of strategies and policies to reduce or allocate of pollution entering the rivers so that the water quality matches by proposing environmental standards with an acceptable reliability. In such matters, often there are several different decision makers with different utilities which lead to conflicts. Methods/Materials: In this research, a conflict resolution framework for optimal waste load allocation in river systems is proposed, considering the total treatment cost and the Biological Oxygen Demand (BOD) violation characteristics. There are two decision-makers inclusive waste load discharges coalition and environmentalists who have conflicting objectives. This framework consists of an embedded river water quality simulator, which simulates the transport process including reaction kinetics. The trade-off curve between objectives is obtained using the Multi-objective Particle Swarm Optimization Algorithm which these objectives are minimization of the total cost of treatment and penalties that must be paid by discharges and a violation of water quality standards considering BOD parameter which is controlled by environmentalists. Thus, the basic policy of river’s water quality management is formulated in such a way that the decision-makers are ensured their benefits will be provided as far as possible. By using MOPSO, five alternatives and their performances under criteria are found. Values that are calculated by MOPSO are applied to form the cardinal Multi-Criteria Decision Making (MCDM) matrix. Afterwards, the cardinal MCDM matrix is transformed into the ordinal form. For studying competitive behaviors in such situations, a mathematical tool called game theory is used. Hence the transition matrix is formed for solving the problem by game theory and qualitative data. Finally the best non-dominated solution is defined using the Nash conflict resolution theory. Results and Discussion: The interaction point of the Sefidrood River and Caspian Sea is considered as a checkpoint and the standard amount of BOD considering the Iranian Protection Agency’s standards is equivalent to 5 mg/l. In the studied area, none of waste load dischargers perform current wastewater treatment. Under this circumstance, the BOD has the value of 26.59 mg/l which violated its standard amount. By MOPSO algorithm and Nash theory five alternatives, which each of them includes both the amount of BOD in checkpoint and treatment and penalty total cost, are obtained for two decision makers. The best and final alternative, that is preferred by both of decision-makers, reduces the BOD amount and the total payable cost to 6.16 mg/l and 296,293 $/year respectively. Conclusion: The practical utility of the proposed model in decision-making is illustrated through a realistic example of the Sefidrood River in the northern part of Iran. As a final alternative, that suggests the most economical measurement by minimizing of treatment and penalty total cost, there are acceptable percentage of treatment per discharge and the violation of standard for BOD parameter is negligible.
- Published
- 2016
- Full Text
- View/download PDF
34. Delayed presentation of traumatic diaphragmatic hernia
- Author
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William E. Aragon, Ernest E. Moore, William L. Saber, and Alan R. Hopeman
- Subjects
Adult ,Male ,Thorax ,medicine.medical_specialty ,Time Factors ,Adolescent ,Diaphragmatic breathing ,Wounds, Penetrating ,Wounds, Nonpenetrating ,medicine ,Humans ,Hernia ,business.industry ,Emergency department ,Middle Aged ,medicine.disease ,Hernia, Diaphragmatic, Traumatic ,Surgery ,Diaphragm (structural system) ,medicine.anatomical_structure ,Abdominal trauma ,Blunt trauma ,Acute Disease ,Emergency Medicine ,Abdomen ,Radiography, Thoracic ,Emergency Service, Hospital ,business ,Intestinal Obstruction - Abstract
More than 111 patients with traumatic diaphragmatic hernia (TDH) were treated in a 512-year period; eight (7.2%) were first recognized more than 30 days postinjury. All were men, and their average age was 33.4 years. Seven injuries were on the left side; one was on the right side. The mechanism of injury was equally divided between penetrating and blunt trauma. Chest roentgenographic abnormalities were seen in all patients. Visceral reduction and diaphragmatic repair, despite strangulation in four patients, was accomplished without mortality and with minimal morbidity. Delayed presentation of TDH is reviewed, emphasizing diagnostic features encountered in the emergency department (ED).
- Published
- 1986
- Full Text
- View/download PDF
35. Intralesional Corticosteroid Therapy for Infantile Hemangiomas
- Author
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Kara Lew, Larry S. Nichter, John F. Reinisch, David T. Morwood, William L. Saber, and Gerald M. Sloan
- Subjects
Male ,medicine.medical_specialty ,Triamcinolone acetonide ,business.industry ,Follow up studies ,Infant ,Betamethasone ,Triamcinolone Acetonide ,Intralesional corticosteroid ,Injections ,Surgery ,Betamethasone acetate ,medicine ,Humans ,Female ,Facial Neoplasms ,Hemangioma ,business ,Head and neck ,Follow-Up Studies ,medicine.drug - Abstract
Intralesional corticosteroid injections were performed in 31 hemangiomas in 30 infants aged 1 to 10 months at first injection. One to five injections were given, spaced 6 weeks apart. Lesions were located throughout the head and neck region, except one that was on the buttock. A mixture of betamethasone acetate and triamcinolone acetonide was used. Four lesions (13 percent) virtually disappeared, ten (32 percent) showed greater than 50 percent reduction in volume, ten (32 percent) showed definite but less than 50 percent reduction in volume, and seven (23 percent) showed little or no decrease in size. None showed further growth. All injections were performed without anesthesia, and there were not significant complications. We conclude that intralesional corticosteroid injections are safe and effective in properly selected infants with hemangiomas.
- Published
- 1989
- Full Text
- View/download PDF
36. Microsomal preparations of normal bovine iris-ciliary body generate prostacyclin-like but not thromboxane-A2-like activity
- Author
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Helena M. T. Eakins, Willian L. Saber, Kenneth E. Eakins, and Prasad S. Kulkarni
- Subjects
medicine.medical_specialty ,Platelet Aggregation ,Indomethacin ,Iris ,Prostacyclin ,Prostaglandin Endoperoxides ,Biochemistry ,Cofactor ,Thromboxane A2 ,chemistry.chemical_compound ,Dogs ,Endocrinology ,Microsomes ,Internal medicine ,medicine ,Animals ,Humans ,Prostaglandins H ,Incubation ,Sheep ,biology ,Chemistry ,Ciliary Body ,Tranylcypromine ,Biological activity ,Arteries ,Iris ciliary body ,Epoprostenol ,Prostaglandins ,cardiovascular system ,biology.protein ,Microsome ,Cattle ,lipids (amino acids, peptides, and proteins) ,Rabbits ,Muscle Contraction ,circulatory and respiratory physiology ,medicine.drug - Abstract
Indomethacin-treated bovine iris-ciliary body microsomes (IBIM) have been studied for their ability to convert PG endoperoxides into either thromboxane-A2 (TxA2)-like or prostacyclin (PGI2)-like activity. The biological activity of the ocular tissue microsomes were compared with either indomethacin-treated human platelet microsomes (for TxA2-like activity) or rabbit aorta microsomes (for PGI2-like activity) under appropriate incubation conditions. No evidence could be found for the formation of TxA2-like activity from PG endoperoxides by the IBIM. In contrast, when the IBIM were incubated with PGH2 for 1 min at 22 degrees C without cofactors, PGI2-like activity was produced, causing profound relaxation of the isolated dog coronary artery preparation without contracting the rabbit aorta and inhibiting arachidonic acid-induced platelet aggregation. Equivalent quantities of boiled IBIM failed to alter the biological activity of PGH2 under identical conditions. Tranylcypromine (500 microgram/ml) completely abolished the appearance of PGI2-like activity. Furthermore, the PGI2-like activity found was stable for 10 min at 22 degrees C at pH 8.5 but completely lost under similar conditions at pH 5.5. It is concluded that microsomal preparations of normal bovine iris-ciliary body can synthesize PGI2-like activity in substantial amounts but not TxA2-like activity.
- Published
- 1977
- Full Text
- View/download PDF
37. Isolation and characterization of Flavobacterium strains that degrade pentachlorophenol
- Author
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R L Crawford and D L Saber
- Subjects
DNA, Bacterial ,Pentachlorophenol ,Biology ,Applied Microbiology and Biotechnology ,Flavobacterium ,Microbiology ,chemistry.chemical_compound ,Plasmid ,Species Specificity ,Soil Microbiology ,Sphingobium chlorophenolicum ,Ecology ,Strain (chemistry) ,DNA–DNA hybridization ,biology.organism_classification ,Kinetics ,chemistry ,Biochemistry ,Bacteria ,DNA ,Food Science ,Biotechnology ,Chlorophenols ,Plasmids ,Research Article - Abstract
Bacteria able to mineralize 100 to 200 ppm of pentachlorophenol (PCP) were isolated by selective enrichment from PCP-contaminated soils from three geographic areas of Minnesota. Although differing somewhat in their responses to various biochemical and biophysical tests, all strains were assigned to the genus Flavobacterium. Five representative strains were examined in detail. All strains metabolized PCP as a sole source of carbon and energy; 73 to 83% of all carbon in the form of [U-14C]PCP was returned as 14CO2, with full liberation of chlorine as chloride. A comparison between strains in their ability to metabolize PCP showed some strains to be more efficient than others. Guanine-plus-cytosine contents of DNA ranged from 58.8 to 63.8%, and DNA/DNA hybridization studies with total DNA digests suggested substantial genetic homology between strains. All strains were shown to possess an 80- to 100-kilobase plasmid, and evidence suggested the presence of a larger plasmid (greater than 200 kilobases).
- Published
- 1985
38. Interalesional Corticosteroid Therapy for Infantile Hemangiomas
- Author
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Gerald M. Sloan, John F. Reinisch, Larry S. Nichter, William L. Saber, Kara Lew, David T. Morwood, and Harvey A. Zarem
- Subjects
Surgery - Published
- 1989
- Full Text
- View/download PDF
39. Ni(II)-selective PVC membrane sensor based on 1,2,4-triazole bis Schiff base ionophore: Synthesis, characterization and application for potentiometric titration of Ni2+ ions against EDTA
- Author
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Gharam I. Mohammed, Amr L. Saber, Hoda A. El-Ghamry, Jalal T. Althakafy, and Hussain Alessa
- Subjects
1,2,4-triazole ,Ionophore ,Electrode ,Membrane ,Sensors ,Schiff base ligand ,Chemistry ,QD1-999 - Abstract
This study involves the preparation and investigation of a novel and highly selective poly(vinyl chloride)-based membrane of 2-((5-(2-hydroxy-3-methoxybenzylideneamino)-2H-1,2,4-triazol-3-ylimino)methyl)-6-methoxyphenol Schiff base ligand (HMBT), which is a neutral ionophore with sodium tetraphenyl borate (STB) in the form of an excluder and o-nitrophenyloctyl ether (o-NPOE) in the form of solvent mediators (plasticizing) as a Ni(II)-selective electrode. The observation of optimal performance was done wherein the membrane was shown to have the HMBT–PVC–NPOE-STB composition of 4:32:63:1.It worked effectively across a broad range of concentration (1.0 × 10−8 to 1.0 × 10−2 mol L−1). Meanwhile, the Nernstian slope was recorded as 29.3 mV per decade of activity between pH 3.0 and 8.0. The response time of this electrode was fast at 11 s which was used for a span of 100 days with sound reproducibility. According to the selectivity coefficients for trivalent, divalent, and monovalent cations, excellent selectivity was indicated for Ni(II) ions across a large number of citations, whereas no interference was caused by anions like PO43−, SO42− and Cl−. The proposed method in this study was applied successfully to determine Ni(II) content in different samples of water, obtaining suitable recoveries. Additionally, the probed sensor is utilized as indicator electrode when considering Ni2+ ion potentiometric titration against EDTA. In addition, the chelate’s geometry and structure of the complex formed between Ni2+ ions and HMBT, abbreviated as HMBT-Ni2, was evaluated by separating the solid product. Complex structure was confirmed based on alternative analytical and spectral methods to be structured in the bimetallic form with the formula [Ni2(HMBT)(H2O)2 Cl2]. The diamagnetic nature of the complex, which was concluded from the room temperature magnetic moment measurement combined with the UV–Vis measurement, suggested the square planar geometry around the Ni centers.
- Published
- 2021
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40. Peribronchial Inflammatory Cell Assessment in COPD Lung Tissues.
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Devilliers MA, Saber Cherif L, Petit LMG, Lalun N, Bonnomet A, Durlach A, Delepine G, Polette M, Perotin JM, Deslée G, and Dormoy V
- Published
- 2024
- Full Text
- View/download PDF
41. Insulin regulates human pancreatic endocrine cell differentiation in vitro.
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Cota P, Caliskan ÖS, Bastidas-Ponce A, Jing C, Jaki J, Saber L, Czarnecki O, Taskin D, Blöchinger AK, Kurth T, Sterr M, Burtscher I, Krahmer N, Lickert H, and Bakhti M
- Subjects
- Humans, Insulin metabolism, Cell Differentiation genetics, Pancreas metabolism, Insulin, Regular, Human metabolism, Induced Pluripotent Stem Cells metabolism, Endocrine Cells metabolism
- Abstract
Objective: The consequences of mutations in genes associated with monogenic forms of diabetes on human pancreas development cannot be studied in a time-resolved fashion in vivo. More specifically, if recessive mutations in the insulin gene influence human pancreatic endocrine lineage formation is still an unresolved question., Methods: To model the extremely reduced insulin levels in patients with recessive insulin gene mutations, we generated a novel knock-in H2B-Cherry reporter human induced pluripotent stem cell (iPSC) line expressing no insulin upon differentiation to stem cell-derived (SC-) β cells in vitro. Differentiation of iPSCs into the pancreatic and endocrine lineage, combined with immunostaining, Western blotting and proteomics analysis phenotypically characterized the insulin gene deficiency in SC-islets. Furthermore, we leveraged FACS analysis and confocal microscopy to explore the impact of insulin shortage on human endocrine cell induction, composition, differentiation and proliferation., Results: Interestingly, insulin-deficient SC-islets exhibited low insulin receptor (IR) signaling when stimulated with glucose but displayed increased IR sensitivity upon treatment with exogenous insulin. Furthermore, insulin shortage did not alter neurogenin-3 (NGN3)-mediated endocrine lineage induction. Nevertheless, lack of insulin skewed the SC-islet cell composition with an increased number in SC-β cell formation at the expense of SC-α cells. Finally, insulin deficiency reduced the rate of SC-β cell proliferation but had no impact on the expansion of SC-α cells., Conclusions: Using iPSC disease modelling, we provide first evidence of insulin function in human pancreatic endocrine lineage formation. These findings help to better understand the phenotypic impact of recessive insulin gene mutations during pancreas development and shed light on insulin gene function beside its physiological role in blood glucose regulation., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Author(s). Published by Elsevier GmbH.. All rights reserved.)
- Published
- 2024
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42. Airway ciliated cells in adult lung homeostasis and COPD.
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Petit LMG, Belgacemi R, Ancel J, Saber Cherif L, Polette M, Perotin JM, Spassky N, Pilette C, Al Alam D, Deslée G, and Dormoy V
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- Humans, Mucociliary Clearance, Axoneme metabolism, Cilia metabolism, Epithelial Cells metabolism, Homeostasis, Lung, Pulmonary Disease, Chronic Obstructive diagnosis, Pulmonary Disease, Chronic Obstructive therapy, Pulmonary Disease, Chronic Obstructive metabolism
- Abstract
Cilia are organelles emanating from the cell surface, consisting of an axoneme of microtubules that extends from a basal body derived from the centrioles. They are either isolated and nonmotile (primary cilia), or grouped and motile (motile cilia). Cilia are at the centre of fundamental sensory processes and are involved in a wide range of human disorders. Pulmonary cilia include motile cilia lining the epithelial cells of the conductive airways to orchestrate mucociliary clearance, and primary cilia found on nondifferentiated epithelial and mesenchymal cells acting as sensors and cell cycle keepers. Whereas cilia are essential along the airways, their regulatory molecular mechanisms remain poorly understood, resulting in a lack of therapeutic strategies targeting their structure or functions. This review summarises the current knowledge on cilia in the context of lung homeostasis and COPD to provide a comprehensive overview of the (patho)biology of cilia in respiratory medicine with a particular emphasis on COPD., Competing Interests: Conflict of interest: J-M. Perotin reports lecture honoraria from AstraZeneca, and travel support from Novartis, AstraZeneca and Chiesi, outside the submitted work. D. Al Alam reports grants from NIH/NHLBI R01HL141856, NIH/NHLBI and Office of the Director R21HL165411, outside the submitted work. G. Deslée reports support for attending meetings from Chiesi, and personal fees from Chiesi, Boehringer, GSK and AstraZeneca, outside the submitted work. V. Dormoy reports personal fees from Chiesi, and personal fees from AstraZeneca, outside the submitted work. All other authors have nothing to disclose., (Copyright ©The authors 2023.)
- Published
- 2023
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43. NEUROD2 function is dispensable for human pancreatic β cell specification.
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Cota P, Saber L, Taskin D, Jing C, Bastidas-Ponce A, Vanheusden M, Shahryari A, Sterr M, Burtscher I, Bakhti M, and Lickert H
- Subjects
- Humans, Animals, Mice, Transcription Factors metabolism, Cell Differentiation genetics, Cell Line, Pancreas, Basic Helix-Loop-Helix Transcription Factors genetics, Basic Helix-Loop-Helix Transcription Factors metabolism, Insulin-Secreting Cells metabolism, Neuropeptides metabolism
- Abstract
Introduction: The molecular programs regulating human pancreatic endocrine cell induction and fate allocation are not well deciphered. Here, we investigated the spatiotemporal expression pattern and the function of the neurogenic differentiation factor 2 (NEUROD2) during human endocrinogenesis., Methods: Using Crispr-Cas9 gene editing, we generated a reporter knock-in transcription factor (TF) knock-out human inducible pluripotent stem cell (iPSC) line in which the open reading frame of both NEUROD2 alleles are replaced by a nuclear histone 2B-Venus reporter (NEUROD2
nVenus/nVenus )., Results: We identified a transient expression of NEUROD2 mRNA and its nuclear Venus reporter activity at the stage of human endocrine progenitor formation in an iPSC differentiation model. This expression profile is similar to what was previously reported in mice, uncovering an evolutionarily conserved gene expression pattern of NEUROD2 during endocrinogenesis. In vitro differentiation of the generated homozygous NEUROD2nVenus/nVenus iPSC line towards human endocrine lineages uncovered no significant impact upon the loss of NEUROD2 on endocrine cell induction. Moreover, analysis of endocrine cell specification revealed no striking changes in the generation of insulin-producing b cells and glucagon-secreting a cells upon lack of NEUROD2., Discussion: Overall, our results suggest that NEUROD2 is expendable for human b cell formation in vitro ., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The authors declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision., (Copyright © 2023 Cota, Saber, Taskin, Jing, Bastidas-Ponce, Vanheusden, Shahryari, Sterr, Burtscher, Bakhti and Lickert.)- Published
- 2023
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44. Folate and Cobalamin Deficiencies during Pregnancy Disrupt the Glucocorticoid Response in Hypothalamus through N -Homocysteinilation of the Glucocorticoid Receptor.
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Michel A, Kokten T, Saber-Cherif L, Umoret R, Alberto JM, Helle D, Julien A, Daval JL, Guéant JL, Bossenmeyer-Pourié C, and Pourié G
- Subjects
- Pregnancy, Female, Animals, Rats, Receptors, Glucocorticoid genetics, Glucocorticoids, Epigenesis, Genetic, Dietary Supplements, Vitamin B 12 pharmacology, Hypothalamus, Folic Acid pharmacology, Vitamin B 12 Deficiency
- Abstract
Vitamin B9 (folate)/B12 (cobalamin) deficiency is known to induce brain structural and/or functional retardations. In many countries, folate supplementation, targeting the most severe outcomes such as neural tube defects, is discontinued after the first trimester. However, adverse effects may occur after birth because of some mild misregulations. Various hormonal receptors were shown to be deregulated in brain tissue under these conditions. The glucocorticoid receptor (GR) is particularly sensitive to epigenetic regulation and post-translational modifications. In a mother-offspring rat model of vitamin B9/B12 deficiency, we investigated whether a prolonged folate supplementation could restore the GR signaling in the hypothalamus. Our data showed that a deficiency of folate and vitamin B12 during the in-utero and early postnatal periods was associated with reduced GR expression in the hypothalamus. We also described for the first time a novel post-translational modification of GR that impaired ligand binding and GR activation, leading to decrease expression of one of the GR targets in the hypothalamus, AgRP. Moreover, this brain-impaired GR signaling pathway was associated with behavioral perturbations during offspring growth. Importantly, perinatal and postnatal supplementation with folic acid helped restore GR mRNA levels and activity in hypothalamus cells and improved behavioral deficits.
- Published
- 2023
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45. The Nicotinic Receptor Polymorphism rs16969968 Is Associated with Airway Remodeling and Inflammatory Dysregulation in COPD Patients.
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Saber Cherif L, Diabasana Z, Perotin JM, Ancel J, Petit LMG, Devilliers MA, Bonnomet A, Lalun N, Delepine G, Maskos U, Gosset P, Polette M, Muggeo A, Guillard T, Deslée G, and Dormoy V
- Subjects
- Airway Remodeling genetics, Formaldehyde, Genome-Wide Association Study, Humans, Inflammation Mediators, Pulmonary Disease, Chronic Obstructive genetics, Receptors, Nicotinic genetics
- Abstract
Genome-wide association studies unveiled the associations between the single nucleotide polymorphism rs16969968 of CHRNA5, encoding the nicotinic acetylcholine receptor alpha5 subunit (α5SNP), and nicotine addiction, cancer, and COPD independently. Here, we investigated α5SNP-induced epithelial remodeling and inflammatory response in human COPD airways. We included 26 α5SNP COPD patients and 18 wild-type α5 COPD patients in a multi-modal study. A comparative histologic analysis was performed on formalin-fixed paraffin-embedded lung tissues. Isolated airway epithelial cells from bronchial brushings were cultivated in the air-liquid interface. Broncho-alveolar fluids were collected to detect inflammatory mediators. Ciliogenesis was altered in α5SNP COPD bronchial and bronchiolar epithelia. Goblet cell hyperplasia was exacerbated in α5SNP small airways. The broncho-alveolar fluids of α5SNP COPD patients exhibited an increase in inflammatory mediators. The involvement of the rs16969968 polymorphism in airway epithelial remodeling and related inflammatory response in COPD prompts the development of innovative personalized diagnostic and therapeutic strategies.
- Published
- 2022
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46. Early warning of a COVID-19 surge on a university campus based on wastewater surveillance for SARS-CoV-2 at residence halls.
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Wang Y, Liu P, Zhang H, Ibaraki M, VanTassell J, Geith K, Cavallo M, Kann R, Saber L, Kraft CS, Lane M, Shartar S, and Moe C
- Subjects
- Humans, RNA, Viral, SARS-CoV-2, Universities, Wastewater-Based Epidemiological Monitoring, COVID-19 epidemiology, Wastewater
- Abstract
As COVID-19 continues to spread globally, monitoring the disease at different scales is critical to support public health decision making. Surveillance for SARS-CoV-2 RNA in wastewater can supplement surveillance based on diagnostic testing. In this paper, we report the results of wastewater-based COVID-19 surveillance on Emory University campus that included routine sampling of sewage from a hospital building, an isolation/quarantine building, and 21 student residence halls between July 13th, 2020 and March 14th, 2021. We examined the sensitivity of wastewater surveillance for detecting COVID-19 cases at building level and the relation between Ct values from RT-qPCR results of wastewater samples and the number of COVID-19 patients residing in the building. Our results show that weekly wastewater surveillance using Moore swab samples was not sensitive enough (6 of 63 times) to reliably detect one or two sporadic cases in a residence building. The Ct values of the wastewater samples over time from the same sampling location reflected the temporal trend in the number of COVID-19 patients in the isolation/quarantine building and hospital (Pearson's r < -0.8), but there is too much uncertainty to directly estimate the number of COVID-19 cases using Ct values. After students returned for the spring 2021 semester, SARS-CoV-2 RNA was detected in the wastewater samples from most of the student residence hall monitoring sites one to two weeks before COVID-19 cases surged on campus. This finding suggests that wastewater-based surveillance can be used to provide early warning of COVID-19 outbreaks at institutions., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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- View/download PDF
47. Role of micronutrients in the management of coronavirus disease 2019.
- Author
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AbdAllah M, Ez Elarab H, Raslan E, Saber L, Daoud E, and Saber M
- Abstract
Micronutrients play an important role in enhancing the immune system, therefore, proper nutritional support of micronutrients could have a positive impact on COVID-19 outcome., (© 2020 The Author(s).)
- Published
- 2020
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48. Methyl Donor Deficiency during Gestation and Lactation in the Rat Affects the Expression of Neuropeptides and Related Receptors in the Hypothalamus.
- Author
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Saber Cherif L, Pourié G, Geoffroy A, Julien A, Helle D, Robert A, Umoret R, Guéant JL, Bossenmeyer-Pourié C, and Daval JL
- Subjects
- Animals, Appetite Depressants pharmacology, Energy Metabolism drug effects, Feeding Behavior drug effects, Female, Folic Acid pharmacology, Gene Expression Regulation drug effects, Gene Expression Regulation genetics, Ghrelin blood, Hypothalamus metabolism, Insulin blood, Insulin genetics, Lactation, Leptin blood, Leptin genetics, Methylation drug effects, Peptide YY blood, Pregnancy, Pro-Opiomelanocortin blood, RNA, Messenger genetics, Rats, Vitamin B 12 genetics, Vitamin B 12 pharmacology, Energy Metabolism genetics, Ghrelin genetics, Peptide YY genetics, Pro-Opiomelanocortin genetics
- Abstract
The micronutrients vitamins B9 and B12 act as methyl donors in the one-carbon metabolism involved in transmethylation reactions which critically influence epigenetic mechanisms and gene expression. Both vitamins are essential for proper development, and their deficiency during pregnancy has been associated with a wide range of disorders, including persisting growth retardation. Energy homeostasis and feeding are centrally regulated by the hypothalamus which integrates peripheral signals and acts through several orexigenic and anorexigenic mediators. We studied this regulating system in a rat model of methyl donor deficiency during gestation and lactation. At weaning, a predominance of the anorexigenic pathway was observed in deficient pups, with increased plasma peptide YY and increased hypothalamic pro-opiomelanocortin (POMC) mRNA, in line with abnormal leptin, ghrelin, and insulin secretion and/or signaling during critical periods of fetal and/or postnatal development of the hypothalamus. These results suggest that early methyl donor deficiency can affect the development and function of energy balance circuits, resulting in growth and weight deficits. Maternal administration of folic acid (3 mg/kg/day) during the perinatal period tended to rectify peripheral metabolic signaling and central neuropeptide and receptor expression, leading to reduced growth retardation.
- Published
- 2019
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49. Developmental Impairments in a Rat Model of Methyl Donor Deficiency: Effects of a Late Maternal Supplementation with Folic Acid.
- Author
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Geoffroy A, Saber-Cherif L, Pourié G, Helle D, Umoret R, Guéant JL, Bossenmeyer-Pourié C, and Daval JL
- Subjects
- Animals, Behavior, Animal, Disease Models, Animal, Female, Folic Acid blood, Homocysteine blood, Methylation, MicroRNAs genetics, MicroRNAs metabolism, Nervous System growth & development, Pregnancy, Rats, Wistar, Vitamin B 12 blood, Dietary Supplements, Folic Acid pharmacology, Growth and Development drug effects
- Abstract
Vitamins B9 (folate) and B12 act as methyl donors in the one-carbon metabolism which influences epigenetic mechanisms. We previously showed that an embryofetal deficiency of vitamins B9 and B12 in the rat increased brain expression of let-7a and miR-34a microRNAs involved in the developmental control of gene expression. This was reversed by the maternal supply with folic acid (3 mg/kg/day) during the last third of gestation, resulting in a significant reduction of associated birth defects. Since the postnatal brain is subject to intensive developmental processes, we tested whether further folate supplementation during lactation could bring additional benefits. Vitamin deficiency resulted in weaned pups (21 days) in growth retardation, delayed ossification, brain atrophy and cognitive deficits, along with unchanged brain level of let-7a and decreased expression of miR-34a and miR-23a. Whereas maternal folic acid supplementation helped restore the levels of affected microRNAs, it led to a reduction of structural and functional defects taking place during the perinatal/postnatal periods, such as learning/memory capacities. Our data suggest that a gestational B-vitamin deficiency could affect the temporal control of the microRNA regulation required for normal development. Moreover, they also point out that the continuation of folate supplementation after birth may help to ameliorate neurological symptoms commonly associated with developmental deficiencies in folate and B12.
- Published
- 2019
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50. Microchimerism evaluation in recipients of living-related or unrelated deceased allograft renal transplants.
- Author
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Crispim JC, Wastowski IJ, Faggioni LP, Costa R, Saber L, and Donadi EA
- Subjects
- Adult, Base Sequence, Cadaver, Chromosomes, Human, Y, DNA Primers, Family, Female, Histocompatibility Testing, Humans, Kidney Transplantation immunology, Male, Middle Aged, Tissue Donors, Kidney Transplantation physiology, Living Donors, Transplantation Chimera
- Abstract
The presence of microchimerism in the peripheral blood of solid organ graft recipients has been associated with long-term solid organ acceptance, immunologic tolerance, and less aggressive immunosuppressive therapy. Molecular biology assays are among the most sensitive methods to detect microchimerism, primarily to evaluate Y chromosome sequences in females as indirect evidence of circulating male nucleated donor cells. We screened for the presence of the SRY sequence region in peripheral blood of 13 female recipients of male kidney grafts: 5 living-related and 8 deceased grafts. Only patients who received grafts from related living donors exhibited microchimerism. Five of 13 patients studied exhibited better graft outcomes, including the 4 who were positive for the SRY sequences.
- Published
- 2006
- Full Text
- View/download PDF
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