1. Detection of Ralstonia pseudosolanacearum in drain water based on concentration, enrichment and the use of a duplex TaqMan PCR test
- Author
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P.J.M. Bonants, L.M. Poleij, O. Mendes, Nasim Sedighian, and J.M. van der Wolf
- Subjects
0106 biological sciences ,Phylotype ,Ralstonia solanacearum ,biology ,Biovar ,Bacterial wilt ,fungi ,food and beverages ,Plant Science ,Cut flowers ,Horticulture ,biology.organism_classification ,01 natural sciences ,010602 entomology ,Biointeractions and Plant Health ,Ornamental plant ,TaqMan ,Life Science ,Agronomy and Crop Science ,Bacteria ,010606 plant biology & botany - Abstract
The Ralstonia solanacearum species complex (RSSC) can cause bacterial wilt in a wide variety of plant species, including a number of ornamental glasshouse crops. Recently in Europe, ornamental rose plants for the production of cut flowers and propagation materials have been strongly affected by Ralstonia pseudosolanacearum , phylotype I, biovar 3. To test for the presence of the pathogen in the glasshouse, sampling of water from a drainage gutter or well may be an efficient strategy since it is known that RSSC can be released from infected root systems in the water. A protocol was developed to detect low densities of R. pseudosolanacearum in drain water collected from rose growers. Drain water was filtered through a bacterial filter, the filtrate was collected and target bacteria enriched for 48 h in Semi‐selective Medium South Africa (SMSA) broth supplemented with sterilized tomato plant extracts. DNA extracted from the enrichment broth was analysed using a TaqMan test in a duplex format, based on specific egl sequences of RSSC and the use of an extraction and amplification control. The optimized protocol had a detection level of ≤1–10 colony forming units of R. pseudosolanacearum in drain water.
- Published
- 2020