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International audience; Understanding how land-use changes affect different facets of plant biodiversity in seminatural European grasslands is of particular importance for biodiversity conservation. As conclusions of previous experimental or synchronic observational studies did not converge toward a general agreement, assessing the recent trends in vegetation change in various grassland systems using a diachronic approach is needed. In this resurvey study, we investigated the recent changes in grassland vegetation of the French Jura Mountains, a region with a long tradition of pastoralism. We compared the floristic composition of 150 grassland plots recorded between 1990 and 2000 with new relevés made in 2012 on the same plots. We considered taxonomic, phylogenetic and functional diversity as well as ecological characteristics of the plant communities derived from ecological indicator values and life strategies of the species. PCA of the floristic composition revealed a significant general trend linked to the sampling year. Wilcoxon paired tests showed that contemporary communities were generally more dominated by grass species and presented a higher tolerance to defoliation, a higher pastoral value, and a higher nutrient indicator value. Comparisons revealed a decrease in phylogenetic and functional diversity. By contrast, local species richness has slightly increased. The intensity of change in species composition, measured by Hellinger distance between pairs of relevés, was dependent on neither the time lag between the two surveys, the author of the first relevé nor its location or elevation. The most important changes were observed in grasslands that previously presented low pastoral value, low grass cover, low tolerance to defoliation, and high proportion of stress-tolerant species. This trend was likely linked to the intensification of grassland management reported in the region, with a parallel increase in mowing frequency, grazing pressure, and fertilization level. More restrictive specifications should be applied to agricultural practices to avoid overexploitation of mountain species-rich grasslands and its negative consequences on their biodiversity and resilience.

Distinct guidelines have been proposed in Romania and Switzerland for the management of pasture woodlands that either focused on the regulation of grazing pressure (Romanian production perspective) or overall tree cover (Swiss conservation perspective). However, the landscape structural diversity and the cover of forest-grassland ecotones, which are both crucial for nature conservation value, were not explicitly considered. We aimed to compare the country-specific management guidelines regarding their efficiency for the conservation of the structurally diverse forest-grassland mosaics in the light of recent land-use and climate change. In strategic simulation experiments using the process-based model of pasture-woodland ecosystems WoodPaM, we analyzed the relationships among drivers for the formation of mosaic patterns (grazing intensity, climate change) and the resulting landscape properties (tree cover, forest-grassland ecotones, mosaic structure) during the past until today (2000 AD). The results showed that tree canopy densification following recent climate warming is likely to trigger landscape structural shifts. Medium grazing pressure promoted the development of the full range of pasture-woodland habitats and is therefore confirmed as a management strategy that balances agronomic demands and nature conservation value. Tree cover is rejected as a criteria to monitor pasture-woodland conservation status, because its relationship to landscape structural diversity and to the cover of forest grassland ecotones did not hold for changing climate. Our results suggest "experimental-retrospective" analysis as a useful tool to test conclusions from expert knowledge. (C) 2016 Elsevier B.V. All rights reserved.

International audience; Peatlands in the northern hemisphere have accumulated more atmospheric carbon (C) during the Holocene than any other terrestrial ecosystem, making peatlands long-term C sinks of global importance. Projected increases in nitrogen (N) deposition and temperature make future accumulation rates uncertain. * Here, we assessed the impact of N deposition on peatland C sequestration potential by investigating the effects of experimental N addition on Sphagnum moss. We employed meta-regressions to the results of 107 field experiments, accounting for sampling dependence in the data. * We found that high N loading (comprising N application rate, experiment duration, background N deposition) depressed Sphagnum production relative to untreated controls. The interactive effects of presence of competitive vascular plants and high tissue N concentrations indicated intensified biotic interactions and altered nutrient stochiometry as mechanisms underlying the detrimental N effects. Importantly, a higher summer temperature (mean for July) and increased annual precipitation intensified the negative effects of N. The temperature effect was comparable to an experimental application of almost 4 g N m)2 yr)1 for each 1°C increase. * Our results indicate that current rates of N deposition in a warmer environment will strongly inhibit C sequestration by Sphagnum-dominated vegetation.

The pasture-woodlands of Central Europe are low-intensity grazing systems in which the structural richness of dynamic forest-grassland mosaics is causal for their high biodiversity. Distinct mosaic patterns in Picea abies- and Fagus sylvatica-dominated pasture-woodlands in the Swiss Jura Mountains suggest a strong influence of tree species regeneration ecology on landscape structural properties. At the landscape scale, however, cause-effect relationships are complicated by habitat selectivity of livestock. We asked which tree species regeneration traits and what kind of feedbacks among local-scale vegetation dynamics and landscape-scale herbivore behavior are causal for the contrasted landscape structural characteristics of Picea- and Fagus-dominated pasture-woodlands. We performed simulation experiments of mosaic pattern formation in both pasture-woodland types. The regeneration traits, namely dispersal distance, resistance to browsing and tolerance to shade, and the rules for habitat selection of cattle were modified and the corresponding shifts in landscape structure were analyzed. Dispersal distance showed a significant, but only local, effect promoting forest fringe formation. Saplings’ resistance to browsing mainly determined overall tree cover, but did not influence landscape structure. At the landscape scale, both shade tolerance of saplings and selective habitat use by cattle were responsible for forest-grassland segregation: high shade tolerance triggered segregation, whereas non-selective habitat use hindered it. Existing local-scale theory on pasture-woodland dynamics is complemented by an herbivore-vegetation feedback among spatial scales. In low-intensity pastures, where large herbivores are preferentially “grazers” and trees form dense canopies, an intrinsic trend towards forest-grassland segregation at the expense of forest-grassland ecotones is predicted.

Questions: What is the impact of nitrogen (N) inputs on the vegetation of mountain permanent grasslands? Beyond the effect of fertilizer quantity (total and available N supply), is there a specific effect of fertilizer quality (the various N sources) on the multiple biodiversity facets of plant communities? Location: Jura Mountains (France). Methods: Based on a vegetation and agronomic survey of 29 mown grasslands, we considered taxonomic, phylogenetic and multi-trait functional diversity indices as well as community-weighted means of seven functional traits (CWMs) including CSR strategies. Using partial redundancy analysis (pRDA) and Spearman correlations, we assessed the response of these biodiversity metrics to (1) the medium-term total N input and the short-term available N input of any origin, and (2) the relative contribution of industrial fertilizers, solid manure, liquid manure, livestock restitutions and atmospheric deposition to the amount of available N added to the soil during the year preceding vegetation sampling. Results: We report significant negative rank correlations between total or available N input and two diversity metrics: species richness and functional richness. Among CWMs, high N inputs were positively correlated with specific leaf area (SLA), competitive and ruderal strategies, and negatively with seed mass and stress-tolerant strategy. Results also revealed various trends according to the N source: when the proportion of available N from livestock restitutions was high, plant communities showed higher taxonomic and phylogenetic diversity and lower leaf dry matter content. In contrast, communities receiving mainly industrial fertilizers showed lower taxonomic and phylogenetic diversity and higher SLA. Moreover, pRDA suggested contrasting impacts of the main N source on life strategies: R strategy appeared more favoured by a high proportion of industrial fertilizers, while C strategy was enhanced by liquid or solid manure. Conclusions: Our observations support the common finding that a high N supply impacts plant functional composition and is associated with a decrease in species richness through the loss of stress-tolerant species. In addition, they show that biodiversity patterns mostly depend on fertilizer origin. In particular, industrial fertilizers appear to be the most detrimental sources of nutrients for both taxonomic and phylogenetic diversity in mountain grasslands.

This study aims at elucidating modern pollen spectra/environmental data relationships from both natural and human-induced vegetation types as an aid for palaeoecological reconstructions. A set of 51 surface moss polsters was sampled from different vegetation and land-use types in the Champsaur area (French Alps) and analysed to obtain modern pollen analogues of ancient cultural landscapes in mountain ecosystems. Samples were selected from grazed areas,mown meadows, cultivated fields, fallow land and deciduous and coniferous forests.Vegetation composition around the sampling points and seventeen types of environmental variables (e.g., management type, soil and topography) were collected all for these 51 sites. Patterns of modern local pollen variation in relation to the environmental variables were explored by means of canonical correspondence analysis (CCA) and associated statistical tests. This correlative model allows us to determine the major explanatory variables and to identify taxa indicative of particular anthropogenic activities, and thus may help to calibrate fossil pollen assemblages.The indicator pollen types are evaluated in the light of comparable material from lowland and mid-elevation areas of western Europe. The results of the French data-set confirm some of the conclusions drawn from the North European data-sets, but also show some site specific features.Pollen markers with a broader global significance common to other regions include Rhinanthus type, Apiaceae and Dipsacaceae for mown meadows, Urtica type, Plantago media/major, Trifolium type and Potentilla type for grazed areas, and Cerealia type, Centaurea cyanus,and Polygonum aviculare for cultivated fields. New pollen anthropogenic indicators typical of our study area are Sanguisorba officinalis, Vicia type (mowing), Lotus type, Onobrychis type, Centaurea nigra type, Serratula type (grazing), Sinapis type and Papaver rhoeas (cultivation). This study provides potentially valuable analogues for humaninduced vegetation types, and it may then become possible to interpret more objectively local pollen diagrams from Alpine mountain environments in terms of past cultural landscape development.

The variability of terminal restriction fragment polymorphism analysis applied to complex microbial communities was assessed statistically. Recent technological improvements were implemented in the successive steps of the procedure, resulting in a standardized procedure which provided a high level of reproducibility.

International audience

International audience; This study examines the effects of land-use policies and natural events on the evolution of two woodland-pastures in the Jura Mountains in Switzerland between 1934 and 2000. The socioeconomic context and the local conditions were seen as major driving forces influencing land management practices which in turn redefined land-use policies. We studied the dynamics of the Jura Mountains’ woodland-pastures, combining a thorough knowledge of the historic context together with aerial image analysis. Besides pointing out general milestones in the evolution of Swiss land policy, we compiled chronicles on the management for both study sites on the basis of archives and interviews. Aerial images taken at time intervals of approximately 15 years were chosen to identify land-cover changes. The method used to analyze them relied on a structural classification of phytocoenoses allowing the determination of four categories of tree-cover densities ranging from unwooded pastures to ungrazed forest. We reported overall areal changes for each tree density class as well as spatial transitions from one category to another. The combination of spatial statistics with qualitative data depicting the evolution of the historic context gives a better understanding of the land-use changes and its rationale. The most important changes in tree density occurred during World War II and resulted in a more open landscape. The intensive use of wooded pastures during the war was the consequence of a high demand for wood and food resources. Postwar protectionist regulations, agricultural subsidies and technical improvements maintained considerable pressure on wooded pastures. Storms and drought episodes further exacerbated this process in some areas. The trend then reversed from the 70s onwards because of the limitations put on milk production and the falling price of wood. This resulted in a more extensive use of pastures leading to tree encroachment. However, remote sites were more impacted than pastures closer to inhabited areas which exhibited a trend towards more segregation between grassland and densely wooded pastures. With both extensification and segregation of land-use, the complex vegetation mosaic and the landscape diversity that characterize woodland pastures are threatened but still offer good economic opportunities that call for differentiated management strategies.

International audience; Silvopastoral systems of the Swiss Jura Mountains serve as a traditional source of forage and timber in the subalpine vegetation belt, but their vulnerability to land use and climate change puts their future sustainability at stake. We coupled experimental and modeling approaches to assess the impact of climate change on the pasture-woodland landscape. We drew conclusions on the resistance potential of wooded pastures with different management intensities by sampling along a canopy cover gradient. This gradient spanned from unwooded pastures associated with intensive farming to densely wooded pastures associated with extensive farming. Transplanted mesocosms of these ecosystems placed at warmer and drier conditions provided experimental evidence that climate change reduced herbaceous biomass production in unwooded pastures but had no effect in sparsely wooded pastures, and even stimulated productivity in densely wooded pastures. Through modeling these results with a spatially explicit model of wooded pastures (WoodPaM) modified for the current application, results were extrapolated to the local landscape under two regionalized Intergovernmental Panel on Climate Change scenarios for climate change. This led to the suggestion that within the Jura pasture-woodlands, forage production in the near future (2000–2050 AD) would be affected disproportionately throughout the landscape. A stable forage supply in hot, dry years would be provided only by extensive and moderate farming, which allows the development of an insulating tree cover within grazed pastures. We conclude that such structural landscape diversity would grant wood-pastures with a buffering potential in the face of climate change in the forthcoming decades.

International audience; An effective implementation of payment for environmental services (PES) must allow for complex interactions of coupled social-ecological systems. We present an integrative study of the pasture-woodland landscape of the Swiss Jura Mountains combining methods from natural and social sciences to explore feedback between vegetation dynamics on paddock level, farm-based decision making, and policy decisions on the national political level. Our modeling results show that concomitant climatic and socioeconomic changes advance the loss of open grassland in silvopastoral landscapes. This would, in the longer term, deteriorate the historical wooded pastures in the region, which fulfill important functions for biodiversity and are widely considered as landscapes that deserve protection. Payment for environmental services could counteract this development while respecting historical land-use and ecological boundary conditions. The assessed policy feedback process reveals that current policy processes may hinder the implementation of PES, even though a payment for the upkeep of wooded pasture would generally enjoy the backing of the relevant policy network. To effectively support the upkeep of the wooded pastures in the Jura, concomitant policy changes, such as market deregulation, must also be taken into account.

International audience

• Peat bogs have accumulated more atmospheric carbon (C) than any other terrestrial ecosystem today. Most of this C is associated with peat moss (Sphagnum) litter. Atmospheric nitrogen (N) deposition can decrease Sphagnum production, compromising the C sequestration capacity of peat bogs. The mechanisms underlying the reduced production are uncertain, necessitating multifactorial experiments. • We investigated whether glasshouse experiments are reliable proxies for field experiments for assessing interactions between N deposition and environment as controls on Sphagnum N concentration and production. We performed a meta-analysis over 115 glasshouse experiments and 107 field experiments. • We found that glasshouse and field experiments gave similar qualitative and quantitative estimates of changes in Sphagnum N concentration in response to N application. However, glasshouse-based estimates of changes in production - even qualitative assessments - diverged from field experiments owing to a stronger N effect on production response in absence of vascular plants in the glasshouse, and a weaker N effect on production response in presence of vascular plants compared to field experiments. • Thus, although we need glasshouse experiments to study how interacting environmental factors affect the response of Sphagnum to increased N deposition, we need field experiments to properly quantify these effects. © 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.

International audience

Modern analogs are commonly used to investigate the relationships between modern pollen rain and the surrounding present vegetation and to improve our interpretation of fossil data. We collected modern pollen and spore rain in 18 more or less grazed and/or forested sites around Lake Saint-Point (Jura Mountains, France). Multivariate numerical techniques were applied to understand how modern pollen and non-pollen palynomorphs (NPP) taxa, collected in moss and dung samples, record local vegetation in the surroundings, and to identify indicators of tree cover or grazing. We show a strong relationship between current local herbaceous vegetation and pollen but underline the limits of past vegetation reconstructions based on AP/NAP ratio. In moss samples, we identified Picea, Abies, Fagus and Coollus pollen as well as Trichocladium, Kretschmaria deusta and Cirrenalia as indicators of tree cover. Spores of Sporormiella and some undetermined palynomorphs such as new NPP LCE-13 were positively correlated with openness while LCE-23 and LCE-32 could represent grazing indicators and/or coprophilous types. As compared to moss samples, dung samples contained much more pollen grains from Trifolium repens-type, Trifolium pratense-type, Plantago lanceolata-type and Plantago major/media-type taxa (grassland species eaten by cattle) and spores from coprophilous fungi. (C) 2012 Elsevier B.V. All rights reserved.

Impact of grazing on the floristic diversity of arid rangelands in South Tunisia. If the effects of grazing on plant diversity have been extensively studied in a wide range of ecosystems, effects of controlled grazing are still largely unknown. Species diversity indices are useful indicators of the sustainability of collective rangelands in southern Tunisia. In order to determine an optimal management method of arid rangelands with high heritage value, we examined the respective effects of continuous grazing, moderate grazing and rest on the plant community’s diversity. We compared diversity indices of the vegetation for three levels of grazing pressure (null, moderate and heavy) in the collective rangelands dominated by Gymnocarpos decander, Hammada schmittiana, Stipagrostis pungens and Anthyllis sericea of Dhahars in the south-eastern region of Tataouine (Tunisia). Species richness and Simpson’s diversity tended to decrease with increased grazing pressure, but the difference was not significant between ungrazed and moderately grazed rangelands. By contrast, species evenness tended to increase with grazing pressure. Diversity and vegetation biological spectrum were only slightly affected by controlled grazing. This study demonstrates the value of this management practice for biodiversity conservation., Si les effets du pâturage sur la diversité floristique ont été largement étudiés sur une large gamme d’écosystèmes, les effets du pâturage contrôlé restent encore très peu connus. Les indices de diversité spécifique sont des indicateurs utiles pour l’évaluation de la durabilité des parcours collectifs. En vue de déterminer un mode de gestion optimal des parcours arides à forte valeur patrimoniale du sud tunisien, nous avons examiné les effets respectifs du pâturage continu, modéré et de mise en repos sur la diversité des communautés végétales. Les indices de diversité de la végétation ont été comparés en fonction de trois niveaux de pression pastorale (nulle, modérée, forte) sur des parcours communautaires à Gymnocarpos decander, Hammada schmittiana, Stipagrostis pungens et Anthyllis sericea des Dhahars de la région au sud-est de Tataouine (Tunisie). La richesse spécifique et la diversité de Simpson tendent à diminuer quand la pression de pâturage est plus élevée, mais la différence n’est pas significative entre les parcours non ou modérément pâturés. L’équitabilité tend par contre à augmenter avec l’augmentation de la charge animale. La diversité spécifique et le spectre biologique de la végétation n’ont été que peu affectés par le pâturage contrôlé. Cette étude montre donc l’intérêt de ce type de gestion pour la conservation de la biodiversité., Gamoun Mouldi,Ouled Belgacem Azaiez,Hanchi Belgacem,Neffati Mohamed,Gillet François. Effet du pâturage sur la diversité floristique des parcours arides du Sud Tunisien. In: Revue d'Écologie (La Terre et La Vie), tome 67, n°3, 2012. pp. 271-282.

International audience; Background and aims - A large variety of methods are used by ecologists for studies at plant community level. While early works were mainly descriptive, more manipulative experiments are now being undertaken because they provide a better functional understanding and a greater insight into underlying mechanisms. Mathematical models are also being increasingly used, in particular for predicting biodiversity under global change. The aim of this study is to highlight the strengths, limitations, and advantages of these three approaches, namely observational, experimental and theoretical modelling. Methods - We assessed 149 papers published during the last four years in three specialized disciplinary journals (DJ) and 151 papers in three generalist high impact journals (HIJ) dealing with plant ecology, and checked the methods that were used. We asked participants of the ECOVEG7 meeting held in Switzerland (Lausanne, April 2011) whether observational, experimental and theoretical modelling approaches can, or should, be used alone or in combination when studying plant communities and ecosystem functioning in the context of global change. Key results - About 50% of articles published in both journal types used only a single approach. Nevertheless, papers in HIJ used the approaches in similar proportions, while articles in DJ had eight times more observational than modelling studies. Combined approaches represented only 8% in DJ, while this percentage was more than double in HIJ. Conclusion - Plant community ecologists favour a combination of several approaches, but for practical difficulties (communicating among people using different approaches and publication strategies), singleapproach studies are generally preferred. A combination of the three highlighted approaches seems to be the most appropriate way to respond to future challenges in plant community ecology such as biodiversity loss and impact of climate change as such studies require work on different temporal and spatial scales.

Recent and future evolution of the silvopastoral landscape in the Jura vaudois Land-use management in silvopastoral landscapes is particularly complex because such ecosystems depend on a subtle equilibrium in the management scheme which aims to provide various ecological goods and services such as fodder, timber and biodiversity, as well as areas for leisure and attractive scenery. In this study we investigated land-use changes in the Parc naturel régional Jura vaudois, and the changes in tree cover density in two pastures using land-use statistics and aerial photographs. A prospective modelling approach was also undertaken on one pasture to assess changes in the landscape structure under two climate scenarios. A general tendency towards segregation between closed forests and open pastures was observed. The agriculture policy has markedly influenced the dynamics of tree cover density, but this effect depended very much on the local situation, for example, the proximity of a village, which allows a better optimization of farm management. The simulation of future development of these landscapes suggests that one might expect large changes in the structure and composition of the vegetation because of climate change. In the long run, areas of high tree densities will expand, and spruce will give way to beech and pine, depending on the warming intensity. Nevertheless, adaptation to new environmental conditions for sustaining ecological goods and services will call for management measures appropriate to the intensity of climate change. Furthermore, an active adaptive management based on experimentation and innovation, as well as allowing collaboration between scientists and land managers will be required to face and mitigate the ecological problems associated with climate change.

International audience; Since 2005, eCoVeG conferences aim to stimulate research and training in the field of plant community ecology by pro- viding every year a forum for discussion and exchange to students, young scientists and researchers from european and African French-speaking countries. topics are related to both theoretical questions (abiotic filtering, biotic interac- tions, species assembly rules, functional traits, phylogeny...) and environmental issues associated with plant communities (global change and disturbances, biodiversity conservation, ecosystem restoration, biological invasions...).

International audience; Aboveground vegetation, four belowground fauna groups and humus composition have been analyzed in order to investigate the links between autotrophic and heterotrophic communities in a Norwayspruce mountain forest in Tours-en-Savoie (France). The aboveground plant community was recorded in small patches corresponding to contrasting microhabitats. Animal communities and humus layers were sampled within the same patches. The relationships between humus profile, faunistic and floristic compositional gradients were investigated by Multiple Factor Analysis (MFA) and, for the first time in ecology, a Hierarchical Multiple Factor Analysis (HMFA) was used to interpret differences among humus layers. The analysis revealed a pattern with three main groups of microhabitats. The thorough study of separate humus layers could explain this result. The interplay of plant-animal-soil interactions is likely to drive the ecosystem toward three alternative states supporting humus traditional classification between mull-mor-moder. HMFA revealed the importance of depth to explain this contrast among humus forms, using humus layers as diagnostic tools in both inert and living components. HMFA also showed contrast between unexploited and exploited parts of the forest, but the study of soil and vegetation indicate that this contrast does not only hold in forest management but also in geomorphology. RV-coefficients among the six groups of variables showed significant fauna-fauna relationships in almost all humus layers except Actinedida. Plant-soil interactions are not as strong as expected and are even weaker when the soil in question is deep. In addition, HMFA failed to show direct interactions between plant and soil fauna but, paradoxically, HMFA does suggest that indirect plant-fauna interactions are at the focus of the ecosystem strategy that leads to the differentiation of ecological niches within the forest mosaic.

Invasion success is favoured by the introduction of pre-adapted genotypes. In addition, novel pressures in the introduced range may lead to phenotypic changes related to fitness or competitive ability of introduced plants. Polyploidy appears to be over-represented in invasive plants, but differences between cytotypes in growth strategies including trade-offs among plant traits have received little attention so far in the context of biological invasions. We grew Centaurea stoebe L. and Senecio inaequidens D.C. in a greenhouse experiment to test for differences in fitness (shoot biomass, reproductive output) and competitive ability (vegetative size, specific leaf area, leaf dry matter content, root–shoot ratio) between diploid and polyploid cytotypes as well as between native and introduced plants. For both species, diploid and tetraploid genotypes occur in the native range, whereas only tetraploids are present in the introduced range. In the native range of both species, diploid and tetraploid genotypes had different growth strategies. Tetraploid genotypes of C. stoebe and S. inaequidens had, respectively, higher specific leaf area and stem height than diploid ones. Thus, for both species, native tetraploids appeared more competitive than native diploids, which could explain, at least partially, the invasion success of the pre-adapted tetraploid genotypes. The comparison of native and introduced tetraploid genotypes revealed differences in traits linked to competitive ability, which could be linked to novel selection in the new environment. In S. inaequidens, we found evidence for a competition-colonisation trade-off, whereas persistence of C. stoebe in the new range seemed to be linked to a competition-defence trade-off.

Due to their spatial complexity and dynamic nature, floodplains provide a wide range of ecosystem functions. However, because of flow regulation, many riverine floodplains have lost their characteristic heterogeneity. Restoration of floodplain habitats and the rehabilitation of key ecosystem functions, many of them linked to organic carbon (C) dynamics in riparian soils, has therefore become a major goal of environmental policy. The fundamental understanding of the factors that drive the processes involved in C cycling in heterogeneous and dynamic systems such as floodplains is however only fragmentary. We quantified soil organic C pools (microbial C and water extractable organic C) and fluxes (soil respiration and net methane production) in functional process zones of adjacent channelized and widened sections of the Thur River, NE Switzerland, on a seasonal basis. The objective was to assess how spatial heterogeneity and temporal variability of these pools and fluxes relate to physicochemical soil properties on one hand, and to soil environmental conditions and flood disturbance on the other hand. Overall, factors related to seasonality and flooding (temperature, water content, organic matter input) affected soil C dynamics more than soil properties did. Coarse-textured soils on gravel bars in the restored section were characterized by low base-levels of organic C pools due to low TOC contents. However, frequent disturbance by flood pulses led to high heterogeneity with temporarily and locally increased C pools and soil respiration. By contrast, in stable riparian forests, the finer texture of the soils and corresponding higher TOC contents and water retention capacity led to high base-levels of C pools. Spatial heterogeneity was low, but major floods and seasonal differences in temperature had additional impacts on both pools and fluxes. Soil properties and base levels of C pools in the dam foreland of the channelized section were similar to the gravel bars of the restored section. By contrast, spatial heterogeneity, seasonal effects and flood disturbance were similar to the forests, except for indications of high CH4 production that are explained by long travel times of infiltrating water favoring reducing conditions. Overall, the restored section exhibited both a larger range and a higher heterogeneity of organic C pools and fluxes as well as a higher plant biodiversity than the channelized section. This suggests that restoration has indeed led to an increase in functional diversity.

International audience; Natural disturbances play a key role in ecosystem dynamics and are important factors for sustainable forest ecosystem management. Quantitative models are frequently employed to tackle the complexities associated with disturbance processes. Here we review the wide variety of approaches to modelling natural disturbances in forest ecosystems, addressing the full spectrum of disturbance modelling from single events to integrated disturbance regimes. We applied a general, process-based framework founded in disturbance ecology to analyze modelling approaches for drought, wind, forest fires, insect pests and ungulate browsing. Modelling approaches were reviewed by disturbance agent and mechanism, and a set of general disturbance modelling concepts was deduced. We found that although the number of disturbance modelling approaches emerging over the last 15 years has increased strongly, statistical concepts for descriptive modelling are still largely prevalent over mechanistic concepts for explanatory and predictive applications. Yet, considering the increasing importance of disturbances for forest dynamics and ecosystem stewardship under anthropogenic climate change, the latter concepts are crucial tool for understanding and coping with change in forest ecosystems. Current challenges for disturbance modelling in forest ecosystems are thus (i) to overcome remaining limits in process understanding, (ii) to further a mechanistic foundation in disturbance modelling, (iii) to integrate multiple disturbance processes in dynamic ecosystem models for decision support in forest management, and (iv) to bring together scaling capabilities across several levels of organization with a representation of system complexity that captures the emergent behaviour of disturbance regimes.

In a future warmer world, peatlands may change from a carbon sink function to a carbon source function. This study tracks changes in water-extractable organic matter (WEOM) after 1 year of in situ experimental warming using open top chambers (OTCs). WEOM was studied in the upper peat layers (0-10 cm) through analysis of water-extractable organic carbon (WEOC), stable C isotopic composition (delta C-13), specific UV absorbance at 280 nm and sugar composition of cores taken from an open bog (DRY sites) and a transitional poor fen (WET sites). At the DRY sites, the impact of OTCs was weak with respect to WEOM parameters, whereas at the WET sites, the air warming treatment led to a decrease in peat water content, suggesting that the supply of heat by OTCs was used mainly for evapotranspiration. OTCs at the WET sites also induced a relative enrichment at the surface (0-5 cm depth) of aliphatic and/or aromatic compounds with concomitant decrease in WEOC, as a result of decomposition. On the contrary, WEOC and sugar content increased in the deeper peat layer (7.5-10 cm depth) probably as a result of increased leaching of phenolic compounds by roots, which then inhibits microbial activity. The different response to experimental warming at DRY and WET sites suggests that the spatial variability of moisture is critical for understanding of the impact of global warming on the fate of OM and the carbon cycle in peatlands. (C) 2011 Elsevier Ltd. All rights reserved.

International audience; Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical Ecology and the implementation of this discipline in the R language. After short theoretical overviews, the authors accompany the users through the exploration of the methods by means of applied and extensively commented examples. Users are invited to use this book as a teaching companion at the computer. The travel starts with exploratory approaches, proceeds with the construction of association matrices, then addresses three families of methods: clustering, unconstrained and canonical ordination, and spatial analysis. All the necessary data files, the scripts used in the chapters, as well as the extra R functions and packages written by the authors, can be downloaded from a web page accessible through the Springer web site (http://www.springer.com/978-1-4419-7975-9). This book is aimed at professional researchers, practitioners, graduate students and teachers in ecology, environmental science and engineering, and in related fields such as oceanography, molecular ecology, agriculture and soil science, who already have a background in general and multivariate statistics and wish to apply this knowledge to their data using the R language, as well as people willing to accompany their disciplinary learning with practical applications. People from other fields (e.g. geology, geography, paleoecology, phylogenetics, anthropology, the social and education sciences, etc.) may also benefit from the materials presented in this book. The three authors teach numerical ecology, both theoretical and practical, to a wide array of audiences, in regular courses in their Universities and in short courses given around the world. Daniel Borcard is lecturer of Biostatistics and Ecology and researcher in Numerical Ecology at Université de Montréal, Québec, Canada. François Gillet is professor of Community Ecology and Ecological Modelling at Université de Franche-Comté, Besançon, France. Pierre Legendre is professor of Quantitative Biology and Ecology at Université de Montréal, Fellow of the Royal Society of Canada, and ISI Highly Cited Researcher in Ecology/Environment.

1. We studied vascular plant and soil-dwelling testate amoeba communities in deglaciated sites across a range of substrate ages in Kenai Fjords, Alaska, USA to test four hypotheses. (i) Patterns of community assembly are similar for vascular plants and testate amoebae. (ii) Vascular plant and testate amoeba communities are more strongly correlated to abiotic variables than to each other, since these communities are not directly linked trophically. (iii) Plant community structure becomes less associated with abiotic condition in succession relative to testate amoebae, as species replacement is believed to be more common for plants than testate amoebae. (iv) Above- and below-ground communities become more strongly linked over the succession, due a shift from predominantly allogenic to autogenic forces. 2. We assessed relationships among biotic communities and abiotic site variables across the chronosequence using multiple factor analysis, redundancy analysis (RDA) and a moving-window analysis. 3. The diversity patterns and the communities’ response to site and soil variables differed between groups. The composition of both communities was significantly explained by bedrock type and moisture regime. The vascular plant community, however, was more influenced by distance from the glacier. 4. Testate amoeba and vascular plant community patterns were significantly linked to each other and to location and physical conditions. The moving-window RDA indicates the variation explained by the physical and chemical environment tended to slightly decrease through the chronosequence for testate amoebae, while a bell-shape response was evidenced for vascular plants. The variation of the microbial community explained by the plant community was very low in the early stages of the succession and became higher than the variation explained by the environmental variables later in the chronosequence. 5. Synthesis. These results suggest that vascular plants and testate amoebae are as linked or more in ecosystem development than either community is to changes in site condition. Furthermore, the strength of interactions varies along the succession. Thus, ecological links may be more important than macro-scale abiotic site condition is to community development, even between communities without direct trophic interactions.

In forest management there is a tendency towards measuring less and simulating more. In this context the development of reliable, user friendly forest simulators has become economically relevant. The objective of this perspective paper is to highlight the recent trends in forest simulation and to identify the remaining challenges to make forest simulation a reliable tool for forest policy and management. Experiences with forest simulators for various purposes in different geographical contexts illustrate how the important challenges of forest decision support can be addressed through flexible customization for different end-user categories, offering spatially explicit approaches at the landscape scale, and integrating empirical and mechanistic models in hybrid and bayesian simulation approaches. Recent development trends in forest simulation for decision support are mainly related to the ever increasing calculation speed and capacity of computers, facilitating the development of robust tools with comfortable user interface and realistic functions and options. Another trend is the combination of simulation tools with optimization and choice algorithms fading away the difference between simulators and decision support systems. The remaining challenges are basically in the high expectations of stakeholders concerning the ability of simulators to predict a range of outcomes in terms of ecosystem services and sustainability indicators, as well as the quality of their outcome in terms of output credibility to stakeholders. Need for accepted and realistic model validation and verification methods preferably using empirical data is crucial in this matter. En la planificación de la gestión forestal existe la tendencia a medir menos y similar más. En este contexto, el desarrollo de simuladores forestales es económicamente relevante para el gestor. El objetivo de este artículo es el de discutir y enfatizar tendencias en el ámbito de la simulación forestal e identificar retos importantes para que la simulación forestal sea una herramienta fiable en el proceso decisorio de la planificación forestal y en el de desarrollo de políticas. Varios ejemplos de simuladores forestales existentes y que responden a objetivos y escalas geográficas distintas, ilustran como la capacidad analítica de los gestores puede mejorar sustancialmente para responder a los grandes retos en el proceso decisorio de la gestión forestal. El artículo presenta simuladores que responden a necesidades de diferentes usuarios y hacen frente a distintas cuestiones, utilizando distintos enfoques y herramientas; desde simuladores espacialmente explícitos basados en modelos empíricos que son integrados con herramientas de optimización, hasta simuladores mecanísticos o basados en enfoques híbridos y bayesianos. El desarrollo más reciente en simulación forestal esta sobretodo relacionado con el incremento de capacidad de cálculo de los computadores, lo que ha facilitado el desarrollo de herramienta robustas y visuales, fáciles de utilizar por los usuarios finales. Otra tendencia, importante es la combinación de herramientas de simulación con técnicas de optimización númerica, lo cual posibilita el desarrollo de los mas modernos sistemas de soporte a la decisión. Uno de los retos más importantes es el de colmar las altas expectativas de los principales agentes y centros decisores forestales en relación a la capacidad de los simuladores y sistemas de apoyo a la decisión para proporcionar información relevante en relación a los servicios ecosistémicos e indicadores de sostenibilidad. En este contexto, es necesaria la validación de los diferentes modelos que configuran los simuladores haciendo uso de información empírica disponible.

Documentation technique de Phytobase 8.

International audience

Cattle activity greatly influences plant species composition and biomass production of grassland ecosystems. Dung deposition by cattle together with grazing and trampling can be considered as one of the important factors driving vegetation dynamics in pastures. The objective of this study was to investigate at 10-cm and 1-month resolution the plant community dynamics induced by dung deposition in two plant communities (a mesotrophic and an oligotrophic grassland) in a pasture of the Swiss Jura Mountains. Vegetation was sampled four or three times during the vegetation period in contiguous 10 cm x 10 cm quadrats from the centre of the dung pat to a distance of 60 cm. A lower grazing intensity near the dung pat was recorded for all observation periods. In the mesotrophic grassland the canopy was higher near the dung pat already one week after dung deposition. Vegetation around dung pats was submitted to two opposite fertilizing and grazing gradients, which induced changes in vegetation texture and structure at fine scale and short term. We observed a positive rank correlation between species turnover and distance to the dung for both communities, suggesting a seasonal stabilizing effect of dung on the plant composition of their direct surroundings (0-10 cm) likely due to cattle avoidance. Since dung pats are dropped every year in different locations, they create in the pasture a shifting mosaic of nutrient availability and grazing intensity inducing at seasonal scale micro-successions in plant communities. (c) 2009 Elsevier B.V. All rights reserved.

Significant areas of temperate bogs have been damaged by peat harvesting. After abandonment and spontaneous regeneration, these secondary mires can become important methane sources towards the atmosphere (Basiliko et al., 2007). Recent studies have shown the importance of methane oxidising bacteria (MOB) for the recycling of carbon from methane effluxes (e.g., Dedysh et al., 2001; Raghoebarsing et al., 2005). We set up a factorial experiment that allowed us to tests the effects of three levels of naturally fluctuating water table depths (13, 22, 35 cm) crossed with the effects of four different litter types (control, E. vaginatum, E. angustifolium, S. fallax). With help of improved 16 rRNA fluorescent in-situ hybridisation techniques we quantified the number of type II methane oxidising bacteria (MOB) living at different depths and just bellow the surface. The results show that the water table can strongly influence the active type II methan-otrophs living in the first 5 cm of the regenerating bare peat. These methane oxidis-ing bacteria were also hampered by the presence of plant litter placed on top of the bare peat surface. This could have important implication for the methane oxidation potential of methane and on restoration management practices.

Significant areas of temperate bogs have been damaged by peat harvesting. After abandonment and spontaneous regeneration, these secondary mires can become important methane sources towards the atmosphere (Basiliko et al., 2007). Recent studies have shown the importance of methane oxidising bacteria (MOBs) for the recycling of carbon from methane effluxes (e.g., Dedysh et al., 2001; Raghoebarsing et al., 2005) but very little information has been gathered on the ecology of these climatically important organisms along regeneration gradients (Artz et al., 2007). The relationship between MOBs and the conditions found in typical regeneration stages was investigated at four European peatlands (CH, F, UK, FIN), each with up to five sites representing a gradient of natural regeneration stages. These sites were extensively characterized with physico-chemical and plant biological descriptors. With help of refined 16 rRNA fluorescent in-situ hybridisation techniques we quantified the number of various types of MOBs (Type I, Type II, AcidM181) living between 5 and 10 cm below the active Sphagnum carpet. The main axes of explained variance were also compared to methane effluxes. The restricted multivariate analyses show that next to important physico-chemical explanations there is a clear correlation between the time since abandonment of the peat cutting (TAPC) and the various functional groups of active MOBs. For exemple, the type I MOBs were negatively - while type II MOBs were positively - related to time. The AcidM181 MOBs show no significant relationship to time. These different strategies in the ecology of MOBs could have important implications for the oxidation of the effusing methane in this particular type of restoration management practice.

Influenced by the combined action of grazing and forest management, wooded pastures represent a traditional form of multiple use of natural resources in some European mountains. This fragile semi-natural ecosystem is characterized by the coexistence of high biodiversity and extensive land use. Based on experimental and observational studies carried out at various spatial scales in the Swiss Jura Mountains, this chapter provides an insight into patterns and processes occurring in this typical silvopastoral ecosystem. Summer grazing by cattle is the main driving force affecting vegetation dynamics. Large herbivores influence vegetation in three ways: grazing and browsing, dung and urine deposition and trampling. Field observations reveal a high heterogeneity of cattle activities at both fine and large scales. Cattle habitat use controls the dynamics of plant species and functional groups in the herb layer. Natural tree regeneration is also closely affected by cattle activity and related to the heterogeneous environment. Distribution of tree seedlings is spatially associated with specific physical structures or nurse plants that facilitate their survival in the herb and the shrub layers. Moreover, the growth of tree saplings is related to grazing intensity. Knowledge of ecological functioning of wooded pastures has allowed the development of a novel, spatially explicit, mosaic compartment model of the dynamics of silvopastoral ecosystems. This model is able to explain some aspects of the origin of vegetation heterogeneity in pasture-woodland landscapes. The conservation of such ecosystems is an important challenge considering its complexity and the present change in agricultural practices in mountain regions. A better integration of ecological and socio-economic processes into predictive multi-level models will permit the exploration of the conditions for sustainable management schemes compatible with biodiversity conservation.

Die Förderung der Baumregeneration durch Ammengebüsche, die einen Schutz gegen große Herbivoren bieten, ist eine wichtige treibende Kraft für die Dynamik von Waldweiden. An dieser Stelle fragten wir uns, ob die Reaktion auf die Förderung durch Ammengebüsch von der Beweidungsresistenz der geschützten Schösslinge abhängt. Wir untersuchten den schützenden Effekt der dornigen Rosa rubiginosa auf die Beweidungsfrequenz, die Überlebensrate und die Veränderungen in der Biomasse für Schösslinge aus zwei Artengruppen experimentell, von denen wir annehmen, dass sie sich in der Beweidungsresistenz unterscheiden: die Nadelbäume Abies alba und Picea abies und die Laubbäume Acer pseudoplatanus und Fagus sylvatica. Die Schösslinge wurden unter die und außerhalb (1,5 m) der gepflanzten Ammengebüsche bei fehlender Beweidung, geringer und hoher Beweidungsintensität gepflanzt. Insgesamt wurden 1920 junge Schösslinge in 60 Blöcken verpflanzt und über ein Jahr beobachtet. Obwohl sich die Anzahl der beweideten Schösslinge nicht zwischen den Artengruppen unterschied, zeigten die Nadelbaumschösslinge eine geringere Resistenz gegenüber der Rinderbeweidung (d. h. geringere Überlebens- und Wachstumsraten) als die Laubbaumschösslinge. Die weniger resistenten Nadelbaumschösslinge profitierten signifikant mehr von den Ammengebüschen als die resistenteren Laubbaumschösslinge in Bezug auf das Wachstum der überlebenden Schösslinge, aber nicht in Bezug auf die Überlebensrate. Dies war wahrscheinlich auf die Beweidung der Ammengebüsche zurückzuführen, bei der zufällig die geschützten Schösslinge mit beweidet wurden, und auf die unterschiedliche Wegnahme von Biomasse. Bei hohen Beweidungsintensitäten nahmen die fördernden Effekte der Ammengebüsche insbesondere für die Nadelbäume ab. Diese Ergebnisse haben wichtige Schlussfolgerungen für die gefährdeten Waldweiden in Westeuropa. Für ein nachhaltiges Management und einen Schutz, der ein Nachwachsen der Bäume ermöglicht, sollte die Beweidungsintensität niedrig bleiben, um den besten Förderungsprozess zu für alle Baumarten zu erlauben, insbesondere für die weniger resistenten Nadelbaumschösslinge. Facilitation of tree regeneration by nurse shrubs that offer protection against large herbivores is an important driver of wood-pasture dynamics. Here we asked whether the response to facilitation by nurse shrubs depends on the grazing resistance of the protégé saplings. We experimentally tested the protective effects of the thorny Rosa rubiginosa on browsing frequency, survival, and biomass change of saplings of two species-groups, presumably differing in grazing resistance: the coniferous Abies alba and Picea abies and the deciduous Acer pseudoplatanus and Fagus sylvatica saplings. The saplings were planted under and outside (1.5 m) planted nurse shrubs, under zero, low and high grazing intensity. In total, 1920 young saplings were transplanted to 60 blocks and followed for 1 year.Although the number of saplings browsed did not differ between species-groups, the coniferous saplings showed lower resistance to cattle browsing (i.e. lower survival and growth rates) than the deciduous saplings. The less resistant coniferous saplings benefited significantly more from nurse shrubs than the more resistant deciduous species in terms of growth of the surviving saplings, but not in terms of overall survival. This was likely due to herbivory on the nurse shrubs causing incidental browsing on protégé saplings and differences in biomass off-take. At high grazing intensity facilitative effects of the nurse shrubs decreased, especially for the coniferous species.These results have important management implications for the endangered wood-pastures in Western Europe. For a sustainable management and conservation that allows tree recruitment, grazing intensity should remain low to best promote facilitation processes for all tree species, but in particular for the less resistant conifer saplings.

communication orale; International audience; Within the PEATWARM project, we use Sphagnum peatlands as a model to analyse their vulnerability to climate change using an experimental system (ITEX) that simulates in situ an increase in average temperature. We aim to determine the effects of temperature increase on the vegetation, the balance of above- and belowground gas fluxes (CO2 and CH4), the microbial diversity and activity in Sphagnum mosses and in peat, and the dynamics of labile and recalcitrant organic matter of peat. The ultimate objective is the creation of a biogeochemical model of C coupled with N and S cycles that includes interactions between these key compartments.

International audience

The ability of saplings to tolerate browsing (i.e. the ability to persist with reduced biomass and to compensate for biomass loss) is influenced by the level of stress and their growth strategies. Ultimately, insight into species-specific responses of saplings to browsing, shade and competition from neighbours will help explain diversity, structure and function of grazed ecosystems such as the endangered wood-pasture systems. We measured the survival, whole-sapling biomass and compensatory growth responses of two coniferous (Picea abies and Abies alba) and two deciduous (Acer pseudoplatanus and Fagus sylvatica) tree species to simulated summer browsing (one single clipping event), shade (installation of a shade cloth) and neighbour removal (mowing surrounding vegetation to ground level) treatments and the interactions between them after two-growing seasons. For all species, there were interacting effects on growth of browsing and environmental condition (shade and neighbours). Simulated browsing resulted in relatively smaller growth losses when plants were growing slowly due to competitive conditions related to herbaceous neighbours. Although none of the clipped saplings could fully compensate for their biomass losses, the saplings were closer to compensation under high competitive conditions than under low competitive conditions. Survival of the clipped saplings remained relatively high and was only significantly reduced for Picea and Acer. Picea was least tolerant of competition and was the only species for which growth was not negatively affected by strong irradiance of a mountain pasture. Surprisingly, the tolerance of saplings to herbivory as browsing tolerance was enhanced under conditions that negatively affected sapling performance (i.e. survival and growth). Apparently, the relative impact of browsing at the early sapling stage is linked to tree life history characteristics such as competition and shade tolerance and will be lower in situations with intense competitive interactions and/or strong irradiance.

International audience; The fine-scale ecological determinants for wood-inhabiting aphyllophoroid basidiomycetes were investigated with statistical analyses of the occurrence of fruit bodies on woody debris collected in Switzerland and Ukraine. Three substrate descriptors were considered: diameter, degree of decomposition and host tree species. By means of Multiple Regression Trees, thresholds in the response of fungal communities to these local environmental descriptors were detected. Three classes for diameter, as well as for degree of decomposition were thus delimited. They revealed the importance of very small sizes, which were not reported in the literature so far: the relevant diameter class limits were about 0.72 cm and 1.35 cm. Within the host tree species, a clear distinction between coniferous and broadleaf species was found. The next splits followed rather climatic determinants of tree distribution than taxonomical entities such as families or genera. The fidelity of the 59 fungal species to diameter classes, decomposition classes and host tree species was measured by the Dufrêne-Legendre index and only significant responses after permutation tests were retained. This brought new insights on the ecology of many wood-inhabiting aphyllophoroid basidiomycetes. Redundancy Analysis was applied to investigate the response of fungal species to diameter and degree of decomposition of woody debris from the most common host tree species, Fagus sylvatica. This direct gradient analysis made it possible to reconstruct the succession of fungal species along the wood decomposition process.

Browsing by livestock has been identified as an important factor preventing tree regeneration in wooded pastures. Two field experiments were performed to investigate the effects of cattle browsing on tree sapling growth in a mountainwooded pasture. Two size classes (ca. 12–17 cm and 41–59 cm) of each of 4 species (Picea abies, Abies alba, Acer pseudoplatanus and Fagus sylvatica) were exposed to zero, low and high grazing intensities. We measured the proportion of saplings browsed and the effect of browsing on growth. A mowing treatment within the zero grazing intensity treatment showed no significant effect on sapling growth. One percent of the large saplings but 25% of the small saplings escaped browsing. Saplings were better protected when surrounded by taller vegetation. The proportion of saplings browsed was not significantly different among species although evergreen tree saplings lost a larger proportion of biomass than deciduous species when browsed. Under grazing, average current-year shoot production and total aboveground biomass of all species were significantly reduced. Browsing effects tended to be smaller at the lower grazing intensity. Because the deciduous species were least reduced in aboveground growth, especially under the low grazing intensity, we conclude that at least in short-term, deciduous species are less affected by cattle browsing.

The loss of biodiversity has become a matter of urgent concern and a better understanding of local drivers is crucial for conservation. Although environmental heterogeneity is recognized as an important determinant of biodiversity, this has rarely been tested using field data at management scale. We propose and provide evidence for the simple hypothesis that local species diversity is related to spatial environmental heterogeneity. Species partition the environment into habitats. Biodiversity is therefore expected to be influenced by two aspects of spatial heterogeneity: 1) the variability of environmental conditions, which will affect the number of types of habitat, and 2) the spatial configuration of habitats, which will affect the rates of ecological processes, such as dispersal or competition. Earlier, simulation experiments predicted that both aspects of heterogeneity will influence plant species richness at a particular site. For the first time, these predictions were tested for plant communities using field data, which we collected in a wooded pasture in the Swiss Jura mountains using a four-level hierarchical sampling design. Richness generally increased with increasing environmental variability and "roughness" (i.e. decreasing spatial aggregation). Effects occurred at all scales, but the nature of the effect changed with scale, suggesting a change in the underlying mechanisms, which will need to be taken into account if scaling up to larger landscapes. Although we found significant effects of environmental heterogeneity, other factors such as history could also be important determinants. If a relationship between environmental heterogeneity and species richness can be shown to be general, recently available high-resolution environmental data can be used to complement the assessment of patterns of local richness and improve the prediction of the effects of land use change based on mean site conditions or land use history.

Management-oriented models of cattle habitat use often treat grazing pressure as a single variable summarizing all cattle activities. This paper addresses the following questions: How does the spatial pattern of cattle effects vary between cattle activities in a highly heterogeneous landscape? Do these patterns change over the grazing season as forage availability decreases? What are the respective roles of natural and management-introduced structures? We estimated the intensity of herbage removal, dung deposition and trampling after each of three grazing periods on a grid of 25 m × 25 m cells covering an entire paddock in the Swiss Jura Mountains. We found no significant positive correlations between cattle effects. Spatial patterns weakened through the season for grazing and trampling, whereas dunging patterns changed little between grazing periods. Redundancy analysis showed that different cattle effects were correlated with different environmental variables and that the importance of management-introduced variables was highest for herbage removal. Autocorrelograms and partial redundancy analyses using principal coordinates of neighbour matrices suggested that dunging patterns were more coarse-grained than the others. Systematic differences in the spatial and seasonal patterns of cattle effects may result in complex interactions with vegetation involving feedback effects through nutrient shift, with strong implications for ecosystem management. In heterogeneous environments, such as pasture-woodland landscapes, spatially explicit models of vegetation dynamics need to model cattle effects separately.

Cattle influences gap dynamics in pastures in two ways: (1) by creating gaps and (2) by affecting the colonization process. This effect of cattle activity on gap revegetation can be subdivided in three main factors: herbage removal, trampling and dung and urine deposition. The objective of this study was to assess how these three effects moderate the plant succession following gap creation. In an exclosure, four controlled treatments simulating cattle activity (repeated mowing, trampling, manuring and untreated control) were applied on plots of 2 X 2 in. In the centre of each plot, one artificial gap of 60 X 60 cm was created. During three years, vegetation changes were monitored in spring and in autumn, with 2 a square grid of 100 cells of 0.01 m(2) centred on the gap. Our experiment confirmed that fine-scale gap creation may have a high impact on relative abundances of species in the community. The gap environment acts on species as a filter and this filtering was described in terms of regenerative attributes. Colonizers were species with small seeds, unspecialized seed dispersal, persistent seed bank and high vegetation spread. However, the role of dung deposition, herbage removal or trampling by cattle did not seem to be of primary importance in the revegetation process, but could moderate vegetation response. Therefore, the different cattle effects act as secondary filters that selectively favoured or disadvantaged different species from the gap-regenerating community. These complex interactions are probably keys to understand plant coexistence in perennial grasslands.

International audience; Plant specialized metabolites play an important role in soil carbon (C) and nutrient fluxes. Through anti-microbial effects, they can modulate microbial assemblages and associated microbial-driven processes, such as nutrient cycling, so to positively or negatively cascade on plant fitness. As such, plant specialized metabolites can be used as a tool to supplant competitors. These compounds are little studied in bryophytes. This is especially notable in peatlands where Sphagnum mosses can dominate the vegetation and show strong interspecific competition. Sphagnum mosses form carpets where diverse microbial communities live and play a crucial role in Sphagnum fitness by regulating C and nutrient cycling. Here, by means of a microcosm experiment, we assessed to what extent moss metabolites of two Sphagnum species (S. fallax and S. divinum) modulate the competitive Sphagnum microbiome, with particular focus on microbial respiration. Using a reciprocal leachate experiment, we found that interactions between Sphagnum leachates and microbiome are species-specific. We show that both Sphagnum leachates differed in compound richness and compound relative abundance, especially sphagnum acid derivates, and that they include microbial-related metabolites. The addition of S. divinum leachate on the S. fallax microbiome immediately reduced microbial respiration (−95%). Prolonged exposition of S. fallax microbiome to S. divinum leachate destabilized the food web structure due to a modulation of microbial abundance. In particular, leachate addition decreased the biomass of testate amoebae and rotifers but increased that of ciliates. These changes did not influence microbial CO 2 respiration, suggesting that the structural plasticity of the food web leads to its functional resistance through the replacement of species that are functionally redundant. In contrast, S. fallax leachate neither affected S. divinum microbial respiration, nor microbial biomass. We, however, found that S. fallax leachate addition stabilized the food web structure associated to S. divinum by changing trophic interactions amongspecies. The differences in allelopathic effects between both Sphagnum leachates might impact their competitiveness and affect species distribution at local scale. Our study further paves the way to better understand the role of moss and microbial specialized metabolites in peatland C dynamics.

International audience; In mountain ecosystems with marked seasonality, climate change can affect various processes in soils, potentially modifying long-term key soil services via change in soil organic carbon (C) storage. Based on a four-year soil transplantation experiment in Swiss subalpine grasslands, we investigated how imposed climate warming and reduced precipitation modified the drivers of soil carbon enzyme potential activities across winter and summer seasons. Specifically, we used structural equation models (SEMs) to identify biotic (microbial community structure, abundance and activity) and abiotic (quantity and quality of organic matter resources) drivers of soil C-enzymes (hydrolase and oxidase) in two seasons under two different climate scenarios. We found contrasting impacts of the climate manipulation on the drivers of C-enzymes between winter and summer. In winter, no direct effect of climate manipulation (reduced rainfall and warming) on enzyme activity was observed. Yet, climate indirectly down-regulated enzyme activity through a decrease in the availability of water extractable organic carbon (WEOC) labile resources. During summer, reduced soil moisture -induced by the climate manipulation- directly reduced soil microbial biomass, which led to a decrease in C-enzyme activity. In general, across both seasons, neither microbial community structure, nor organic matter quality were strong determinants of enzymatic activity. In particular organic matter recalcitrance (aromaticity) was not found as a general driver of either hydrolase or oxidase C-enzyme potential activities, though we did observe higher C-enzyme activities led to an increase of particulate organic matter recalcitrance in the summer season. Overall, our results highlight the seasonality of climate change effects on soil organic matter enzymatic decomposition, providing a comprehensive picture of seasonal potential cause and effect relationships governing C mineralization in subalpine grassland.

Peatlands are ecosystems for which carbon budget relies strongly on the meteorological and hydrological conditions. Here, using a manipulative field experiment, we measured ecosystem respiration (RECO) over two years (2013–2014) in a poor fen in Poland to estimate the carbon emission in a changing climate. The experiment consisted of warming (open-top chambers - OTC) and water table manipulation. The application of OTC increased the mean values of daily maximum air temperature by approx. 1.1–1.8 °C. Warming or the increased water table depth separately resulted in an increase in ecosystem respiration by approx. 0.1 μmol CO2 m−2 s−1 and 0.3 μmol CO2 m−2 s−1, respectively. However, our results show also the additive nature of warming and water table drawdown impact on daily RECO during the studied years (2013–0.80 μmol CO2 m−2 s−1 and 2014–1.16 μmol CO2 m−2 s−1). With the natural dry period event which occurred in 2014, the seasonal RECO increased by approx. 0.2 μmol CO2 m−2 s−1 as compared to the previous year. Projected global warming will therefore significantly enhance C loss from poor fens in this region of Europe.

(IF 5.29; Q1); International audience; Plants and earthworms, as soil ecosystem engineers, play a crucial role during stabilisation of organic matter in soil through its incorporation into soil aggregates. It is therefore essential to better understand the mechanisms and interactions of soil engineering organisms regarding soil organic matter stabilisation. Several methods have already been successfully applied to differentiate soil aggregates by their origin, but they cannot specify the degree of organic matter stability within soil aggregates. Rock-Eval pyrolysis has already been proved to be pertinent for analyses of soil organic matter bulk chemistry and thermal stability, but it has not yet been directly applied to identify biogenic organic matter signatures within soil aggregates. In this study, Rock-Eval pyrolysis was used for the identification of the soil aggregate origin as well as for the determination of the soil organic matter bulk chemistry and thermal stability in a controlled experiment. Mesocosms were set up, containing treatments with a plant, an earthworm species, or both. Water stable soil macro-aggregates > 250 μm were sampled and tested with Rock-Eval pyrolysis after a two-month incubation period. Rock-Eval pyrolysis was able to differentiate soil macro-aggregates by their origin, and to identify a specific signature for each treatment. Macro-aggregates from the plant and earthworm treatment were characterized by a mixed signature incoming from the two soil engineers, indicating that both engineers contribute concomitantly to soil aggregate formation. Organic matter thermal stability was not positively affected by earthworms and even tends to decrease for the plant treatment, emphasising that organic matter was mainly physically protected during the incubation period, but not stabilised. However, future research is required to test if signatures for the tested organisms are species-specific or generally assignable to other plant and earthworm species.

Northern peatlands are large repositories of carbon. Peatland vascular plant community composition has been functionally associated to a set of biogeochemical processes such as carbon cycling. Yet, we do not fully understand to what extent vascular plant functional types (PFTs) affect the quality of dissolved organic matter, and if there is any feedback on soil microbial activity. Using a longer-term plant removal experiment in a boreo-nemoral peatland in Southern Sweden, we relate the dominance of different vascular plant functional types (i.e. ericoids and graminoids) to the chemistry of the dissolved organic matter (DOM) and microbial enzymatic activities (fluorescein diacetate hydrolysis, FDA). Our results show that PFTs modifies the composition of DOM moieties, with a decrease of low molecular weight organic compounds after vascular plant removal. The decrease of enzymatic activity by up to 68 % in the plant removal plots suggests a reduction in DOM mineralization in the absence of vascular plants. Our results show that plant-derived low molecular organic compounds enhance peatland microbial activity, and suggest that an increase of vascular plant cover in response to climate change can potentially destabilize the OM in peatlands, leading to increased carbon losses.

Assessing the effect of global warming on forest growth requires a better understanding of species-specific responses to climate change conditions. Norway spruce and European beech are among the dominant tree species in Europe and are largely used by the timber industry. Their sensitivity to changes in climate and extreme climatic events, however, endangers their future sustainability. Identifying the key climatic factors limiting their growth and survival is therefore crucial for assessing the responses of these two species to ongoing climate change. We studied the vulnerability of beech and spruce to warmer and drier conditions by transplanting saplings from the top to the bottom of an elevational gradient in the Jura Mountains in Switzerland. We (1) demonstrated that a longer growing season due to warming could not fully account for the positive growth responses, and the positive effect on sapling productivity was species-dependent, (2) demonstrated that the contrasting growth responses of beech and spruce were mainly due to different sensitivities to elevated vapor-pressure deficits (VPD), (3) determined the species-specific limits to VPD above which growth rate began to decline, and (4) demonstrated that models incorporating extreme climatic events could account for the response of growth to warming better than models using only average values. These results support that the sustainability of forest trees in the coming decades will depend on how extreme climatic events will change, irrespective of the overall warming trend.

This is the peer reviewed version of the following article: Jassey, V. E. J., Reczuga, M. K., Zielinska, M., Slowinska, S., Robroek, B. J. M., Mariotte, P., ... Buttler, A. (2017) Tipping point in plant–fungal interactions under severe drought causes abrupt rise in peatland ecosystem respiration. Global Change Biology, 24(3), 972-98., which has been published in final form at https://doi.org/10.1111/gcb.13928. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions. Ecosystems are increasingly prone to climate extremes, such as drought, with long‐lasting effects on both plant and soil communities and, subsequently, on carbon (C) cycling. However, recent studies underlined the strong variability in ecosystem's response to droughts, raising the issue of nonlinear responses in plant and soil communities. The conundrum is what causes ecosystems to shift in response to drought. Here, we investigated the response of plant and soil fungi to drought of different intensities using a water table gradient in peatlands—a major C sink ecosystem. Using moving window structural equation models, we show that substantial changes in ecosystem respiration, plant and soil fungal communities occurred when the water level fell below a tipping point of −24 cm. As a corollary, ecosystem respiration was the greatest when graminoids and saprotrophic fungi became prevalent as a response to the extreme drought. Graminoids indirectly influenced fungal functional composition and soil enzyme activities through their direct effect on dissolved organic matter quality, while saprotrophic fungi directly influenced soil enzyme activities. In turn, increasing enzyme activities promoted ecosystem respiration. We show that functional transitions in ecosystem respiration critically depend on the degree of response of graminoids and saprotrophic fungi to drought. Our results represent a major advance in understanding the nonlinear nature of ecosystem properties to drought and pave the way towards a truly mechanistic understanding of the effects of drought on ecosystem processes.