119 results on '"Lace, B."'
Search Results
2. Genomic analyses in Cornelia de Lange Syndrome and related diagnoses: Novel candidate genes, genotype-phenotype correlations and common mechanisms.
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Kaur, M, Blair, J, Devkota, B, Fortunato, S, Clark, D, Lawrence, A, Kim, J, Do, W, Semeo, B, Katz, O, Mehta, D, Yamamoto, N, Schindler, E, Al Rawi, Z, Wallace, N, Wilde, JJ, McCallum, J, Liu, J, Xu, D, Jackson, M, Rentas, S, Tayoun, AA, Zhe, Z, Abdul-Rahman, O, Allen, B, Angula, MA, Anyane-Yeboa, K, Argente, J, Arn, PH, Armstrong, L, Basel-Salmon, L, Baynam, G, Bird, LM, Bruegger, D, Ch'ng, G-S, Chitayat, D, Clark, R, Cox, GF, Dave, U, DeBaere, E, Field, M, Graham, JM, Gripp, KW, Greenstein, R, Gupta, N, Heidenreich, R, Hoffman, J, Hopkin, RJ, Jones, KL, Jones, MC, Kariminejad, A, Kogan, J, Lace, B, Leroy, J, Lynch, SA, McDonald, M, Meagher, K, Mendelsohn, N, Micule, I, Moeschler, J, Nampoothiri, S, Ohashi, K, Powell, CM, Ramanathan, S, Raskin, S, Roeder, E, Rio, M, Rope, AF, Sangha, K, Scheuerle, AE, Schneider, A, Shalev, S, Siu, V, Smith, R, Stevens, C, Tkemaladze, T, Toimie, J, Toriello, H, Turner, A, Wheeler, PG, White, SM, Young, T, Loomes, KM, Pipan, M, Harrington, AT, Zackai, E, Rajagopalan, R, Conlin, L, Deardorff, MA, McEldrew, D, Pie, J, Ramos, F, Musio, A, Kline, AD, Izumi, K, Raible, SE, Krantz, ID, Kaur, M, Blair, J, Devkota, B, Fortunato, S, Clark, D, Lawrence, A, Kim, J, Do, W, Semeo, B, Katz, O, Mehta, D, Yamamoto, N, Schindler, E, Al Rawi, Z, Wallace, N, Wilde, JJ, McCallum, J, Liu, J, Xu, D, Jackson, M, Rentas, S, Tayoun, AA, Zhe, Z, Abdul-Rahman, O, Allen, B, Angula, MA, Anyane-Yeboa, K, Argente, J, Arn, PH, Armstrong, L, Basel-Salmon, L, Baynam, G, Bird, LM, Bruegger, D, Ch'ng, G-S, Chitayat, D, Clark, R, Cox, GF, Dave, U, DeBaere, E, Field, M, Graham, JM, Gripp, KW, Greenstein, R, Gupta, N, Heidenreich, R, Hoffman, J, Hopkin, RJ, Jones, KL, Jones, MC, Kariminejad, A, Kogan, J, Lace, B, Leroy, J, Lynch, SA, McDonald, M, Meagher, K, Mendelsohn, N, Micule, I, Moeschler, J, Nampoothiri, S, Ohashi, K, Powell, CM, Ramanathan, S, Raskin, S, Roeder, E, Rio, M, Rope, AF, Sangha, K, Scheuerle, AE, Schneider, A, Shalev, S, Siu, V, Smith, R, Stevens, C, Tkemaladze, T, Toimie, J, Toriello, H, Turner, A, Wheeler, PG, White, SM, Young, T, Loomes, KM, Pipan, M, Harrington, AT, Zackai, E, Rajagopalan, R, Conlin, L, Deardorff, MA, McEldrew, D, Pie, J, Ramos, F, Musio, A, Kline, AD, Izumi, K, Raible, SE, and Krantz, ID
- Abstract
Cornelia de Lange Syndrome (CdLS) is a rare, dominantly inherited multisystem developmental disorder characterized by highly variable manifestations of growth and developmental delays, upper limb involvement, hypertrichosis, cardiac, gastrointestinal, craniofacial, and other systemic features. Pathogenic variants in genes encoding cohesin complex structural subunits and regulatory proteins (NIPBL, SMC1A, SMC3, HDAC8, and RAD21) are the major pathogenic contributors to CdLS. Heterozygous or hemizygous variants in the genes encoding these five proteins have been found to be contributory to CdLS, with variants in NIPBL accounting for the majority (>60%) of cases, and the only gene identified to date that results in the severe or classic form of CdLS when mutated. Pathogenic variants in cohesin genes other than NIPBL tend to result in a less severe phenotype. Causative variants in additional genes, such as ANKRD11, EP300, AFF4, TAF1, and BRD4, can cause a CdLS-like phenotype. The common role that these genes, and others, play as critical regulators of developmental transcriptional control has led to the conditions they cause being referred to as disorders of transcriptional regulation (or "DTRs"). Here, we report the results of a comprehensive molecular analysis in a cohort of 716 probands with typical and atypical CdLS in order to delineate the genetic contribution of causative variants in cohesin complex genes as well as novel candidate genes, genotype-phenotype correlations, and the utility of genome sequencing in understanding the mutational landscape in this population.
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- 2023
3. VP.06 A new case of congenital myopathy related to TNNC2
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Lace, B., primary, Laflamme, N., additional, Setty, S. Thonta, additional, Rioux, N., additional, Ellezam, B., additional, Rivest, S., additional, and Chrestian, N., additional
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- 2022
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4. LGMD
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Lace, B., primary, Stavusis, J., additional, Micule, I., additional, Kenina, V., additional, Taurina, G., additional, Zdanovica, A., additional, Mroczek, M., additional, Burnyte, B., additional, and Inaskina, I., additional
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- 2021
- Full Text
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5. CAV3 gene sequence variations: National Genome Database and clinics
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Stavusis, J., Inashkina, I., Jankevics, E., Radovica, I., Micule, I., Strautmanis, J., Naudina, M. S., Utkus, A., Burnyte, B., and Lace, B.
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- 2015
- Full Text
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6. From clinical and biochemical to molecular genetic diagnosis of Wilson disease in Latvia
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Krumina, A., Keiss, J., Sondore, V., Chernushenko, A., Cernevska, G., Zarina, A., Micule, I., Piekuse, L., Kreile, M., Lace, B., Krumina, Z., and Rozentale, B.
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- 2008
- Full Text
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7. EIF2AK2 Missense Variants Associated with Early Onset Generalized Dystonia
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Kuipers, D. (Demy), Mandemakers, W.J. (Wim), Lu, C.-S. (Chin-Song), Olgiati, S. (Simone), Breedveld, G.J. (Guido), Fevga, C. (Christina), Tadic, V. (Vera), Carecchio, M. (Miryam), Osterman, B. (Bradley), Sagi-Dain, L. (Lena), Wu-Chou, Y.H. (Yah-Huei), Chen, C.C. (Chiung C.), Chang, H.C. (Hsiu-Chen), Wu, S.-L. (Shey-Lin), Yeh, T.-H. (Tu-Hsueh), Weng, Y.H. (Yi Hsin), Elia, A.E. (Antonio E.), Panteghini, C. (Celeste), Marotta, N. (Nicolas), Pauly, M.G. (Martje G.), Kühn, A.A. (Andrea A.), Volkmann, J. (Jens), Lace, B. (Baiba), Meijer, I.A. (Inge A.), Kandaswamy, K. (Krishna), Quadri, M. (Marialuisa), Garavaglia, B. (Barbara), Lohmann, K. (Katja), Bauer, P. (Peter), Mencacci, N.E. (Niccolo), Lubbe, S.J. (Steven J.), Klein, C. (Christoph), Bertoli Avella, A.M. (Aida), Bonifati, V. (Vincenzo), Kuipers, D. (Demy), Mandemakers, W.J. (Wim), Lu, C.-S. (Chin-Song), Olgiati, S. (Simone), Breedveld, G.J. (Guido), Fevga, C. (Christina), Tadic, V. (Vera), Carecchio, M. (Miryam), Osterman, B. (Bradley), Sagi-Dain, L. (Lena), Wu-Chou, Y.H. (Yah-Huei), Chen, C.C. (Chiung C.), Chang, H.C. (Hsiu-Chen), Wu, S.-L. (Shey-Lin), Yeh, T.-H. (Tu-Hsueh), Weng, Y.H. (Yi Hsin), Elia, A.E. (Antonio E.), Panteghini, C. (Celeste), Marotta, N. (Nicolas), Pauly, M.G. (Martje G.), Kühn, A.A. (Andrea A.), Volkmann, J. (Jens), Lace, B. (Baiba), Meijer, I.A. (Inge A.), Kandaswamy, K. (Krishna), Quadri, M. (Marialuisa), Garavaglia, B. (Barbara), Lohmann, K. (Katja), Bauer, P. (Peter), Mencacci, N.E. (Niccolo), Lubbe, S.J. (Steven J.), Klein, C. (Christoph), Bertoli Avella, A.M. (Aida), and Bonifati, V. (Vincenzo)
- Abstract
Objective: The study was undertaken to identify a monogenic cause of early onset, generalized dystonia. Methods: Methods consisted of genome-wide linkage analysis, exome and Sanger sequencing, clinical neurological examination, brain magnetic resonance imaging, and protein expression studies in skin fibroblasts from patients. Results: We identified a heterozygous variant, c.388G>A, p.Gly130Arg, in the eukaryotic tra
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- 2020
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8. A second cohort of CHD3 patients expands the molecular mechanisms known to cause Snijders Blok-Campeau syndrome
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Drivas, T. G., Li, D., Nair, D., Alaimo, J. T., Alders, M., Altmuller, J., Barakat, T. S., Bebin, E. M., Bertsch, N. L., Blackburn, P. R., Blesson, A., Bouman, A. M., Brockmann, K., Brunelle, P., Burmeister, M., Cooper, G. M., Denecke, J., Dieux-Coeslier, A., Dubbs, H., Ferrer, A., Gal, D., Bartik, L. E., Gunderson, L. B., Hasadsri, L., Jain, M., Karimov, C., Keena, B., Klee, E. W., Kloth, K., Lace, B., Macchiaiolo, M., Marcadier, J. L., Milunsky, J. M., Napier, M. P., Ortiz-Gonzalez, X. R., Pichurin, P. N., Pinner, J., Powis, Z., Prasad, C., Radio, F. C., Rasmussen, K. J., Renaud, D. L., Rush, E. T., Saunders, C., Selcen, D., Seman, A. R., Shinde, D. N., Smith, E. D., Smol, T., Snijders Blok, L., Stoler, J. M., Tang, S., Tartaglia, M., Thompson, M. L., van de Kamp, J. M., Wang, J., Weise, D., Weiss, K., Woitschach, R., Wollnik, B., Yan, H., Zackai, E. H., Zampino, Giuseppe, Campeau, P., Bhoj, E., Zampino G. (ORCID:0000-0003-3865-3253), Drivas, T. G., Li, D., Nair, D., Alaimo, J. T., Alders, M., Altmuller, J., Barakat, T. S., Bebin, E. M., Bertsch, N. L., Blackburn, P. R., Blesson, A., Bouman, A. M., Brockmann, K., Brunelle, P., Burmeister, M., Cooper, G. M., Denecke, J., Dieux-Coeslier, A., Dubbs, H., Ferrer, A., Gal, D., Bartik, L. E., Gunderson, L. B., Hasadsri, L., Jain, M., Karimov, C., Keena, B., Klee, E. W., Kloth, K., Lace, B., Macchiaiolo, M., Marcadier, J. L., Milunsky, J. M., Napier, M. P., Ortiz-Gonzalez, X. R., Pichurin, P. N., Pinner, J., Powis, Z., Prasad, C., Radio, F. C., Rasmussen, K. J., Renaud, D. L., Rush, E. T., Saunders, C., Selcen, D., Seman, A. R., Shinde, D. N., Smith, E. D., Smol, T., Snijders Blok, L., Stoler, J. M., Tang, S., Tartaglia, M., Thompson, M. L., van de Kamp, J. M., Wang, J., Weise, D., Weiss, K., Woitschach, R., Wollnik, B., Yan, H., Zackai, E. H., Zampino, Giuseppe, Campeau, P., Bhoj, E., and Zampino G. (ORCID:0000-0003-3865-3253)
- Abstract
There has been one previous report of a cohort of patients with variants in Chromodomain Helicase DNA-binding 3 (CHD3), now recognized as Snijders Blok-Campeau syndrome. However, with only three previously-reported patients with variants outside the ATPase/helicase domain, it was unclear if variants outside of this domain caused a clinically similar phenotype. We have analyzed 24 new patients with CHD3 variants, including nine outside the ATPase/helicase domain. All patients were detected with unbiased molecular genetic methods. There is not a significant difference in the clinical or facial features of patients with variants in or outside this domain. These additional patients further expand the clinical and molecular data associated with CHD3 variants. Importantly we conclude that there is not a significant difference in the phenotypic features of patients with various molecular disruptions, including whole gene deletions and duplications, and missense variants outside the ATPase/helicase domain. This data will aid both clinical geneticists and molecular geneticists in the diagnosis of this emerging syndrome.
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- 2020
9. AUTOIMMUNE MYOPATHIES
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Chrestian, N., primary, Rioux, N., additional, Proulx-Gauthier, J., additional, Ellezam, B., additional, Labrie, Y., additional, Rivest, S., additional, and Lace, B., additional
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- 2020
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10. CONGENITAL MYOPATHIES 1 – NEMALINE
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Chrestian, N., primary, Laflamme, N., additional, Labrie, Y., additional, Rioux, N., additional, Dugas, M., additional, Rivest, S., additional, and Lace, B., additional
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- 2020
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11. Age of SERPINA1 Gene PI Z Mutation: Swedish and Latvian Population Analysis
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Lace, B., Sveger, T., Krams, A., Cernevska, G., and Krumina, A.
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- 2008
12. LGMD: EP.195 The most common CAPN3 disease causing variant in north-eastern Europe population or controversial coincidence
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Lace, B., Stavusis, J., Micule, I., Kenina, V., Taurina, G., Zdanovica, A., Mroczek, M., Burnyte, B., and Inaskina, I.
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- 2021
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13. AUTOIMMUNE MYOPATHIES: P.297 A case of juvenile HMGCR antibody myositis presenting as limb girdle muscular dystrophy
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Chrestian, N., Rioux, N., Proulx-Gauthier, J., Ellezam, B., Labrie, Y., Rivest, S., and Lace, B.
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- 2020
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14. Muscle hyperthrophy with RYR1 mutation
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Chrestian, N., primary, Lace, B., additional, Gould, P., additional, and Dionne, A., additional
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- 2017
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15. Gate crashing arbuscular mycorrhizas: in vivo imaging shows the extensive colonization of both symbionts by Trichoderma atroviride
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Lace B., Genre A., Woo S., Faccio A., Lorito M., and Bonfante P.
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fungi ,food and beverages ,AM fungi - Abstract
Plant growth-promoting fungi include strains of Trichoderma species that are used in biocontrol, and arbuscular mycorrhizal (AM) fungi, that enhance plant nutrition and stress resistance. The concurrent interaction of plants with these two groups of fungi affects crop performance but has only been occasionally studied so far. Using in vivo imaging of green fluorescent protein-tagged lines, we investigated the cellular interactions occurring between Trichoderma atroviridePKI1, Medicago truncatula and two Gigaspora species under in vitro culture conditions. Trichoderma atroviride did not activate symbiotic-like responses in the plant cells, such as nuclear calcium spiking or cytoplasmic aggregations at hyphal contact sites. Furthermore, T.atroviride parasitized G.gigantea and G.margarita hyphae through localized wall breaking and degradation - although this was not associated with significant chitin lysis nor the upregulation of two major chitinase genes. Trichodermaatroviride colonized broad areas of the root epidermis, in association with localized cell death. The infection of both symbionts was also observed when T.atroviride was applied to a pre-established AM symbiosis. We conclude that - although this triple interaction is known to improve plant growth in agricultural environments - in vitro culture demonstrate a particularly aggressive mycoparasitic and plant-colonizing behaviour of a biocontrol strain of Trichoderma.
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- 2015
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16. CAV3gene sequence variations: National Genome Database and clinics
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Stavusis, J., primary, Inashkina, I., additional, Jankevics, E., additional, Radovica, I., additional, Micule, I., additional, Strautmanis, J., additional, Naudina, M. S., additional, Utkus, A., additional, Burnyte, B., additional, and Lace, B., additional
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- 2015
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17. Clinical and biochemical features guiding the diagnostics in neurometabolic cutis laxa
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Gardeitchik, T., Mohamed, M., Fischer, B., Lammens, M.M., Lefeber, D.J., Lace, B., Parker, M., Kim, K.J., Lim, B.C., Haberle, J., Garavelli, L., Jagadeesh, S., Kariminejad, A., Guerra, D., Leao, M., Keski-Filppula, R., Brunner, H.G., Nijtmans, L.G.J., Heuvel, B. van den, Wevers, R.A., Kornak, U., Morava, E., Gardeitchik, T., Mohamed, M., Fischer, B., Lammens, M.M., Lefeber, D.J., Lace, B., Parker, M., Kim, K.J., Lim, B.C., Haberle, J., Garavelli, L., Jagadeesh, S., Kariminejad, A., Guerra, D., Leao, M., Keski-Filppula, R., Brunner, H.G., Nijtmans, L.G.J., Heuvel, B. van den, Wevers, R.A., Kornak, U., and Morava, E.
- Abstract
Contains fulltext : 137634.pdf (publisher's version ) (Closed access), Patients with cutis laxa (CL) have wrinkled, sagging skin with decreased elasticity. Skin symptoms are associated with variable systemic involvement. The most common, genetically highly heterogeneous form of autosomal recessive CL, ARCL2, is frequently associated with variable metabolic and neurological symptoms. Progeroid symptoms, dysmorphic features, hypotonia and psychomotor retardation are highly overlapping in the early phase of these disorders. This makes the genetic diagnosis often challenging. In search for discriminatory symptoms, we prospectively evaluated clinical, neurologic, metabolic and genetic features in our patient cohort referred for suspected ARCL. From a cohort of 26 children, we confirmed mutations in genes associated with ARCL in 16 children (14 probands), including 12 novel mutations. Abnormal glycosylation and gyration abnormalities were mostly, but not always associated with ATP6V0A2 mutations. Epilepsy was most common in ATP6V0A2 defects. Corpus callosum dysgenesis was associated with PYCR1 and ALDH18A1 mutations. Dystonic posturing was discriminatory for PYCR1 and ALDH18A1 defects. Metabolic markers of mitochondrial dysfunction were found in one patient with PYCR1 mutations. So far unreported white matter abnormalities were found associated with GORAB and RIN2 mutations. We describe a large cohort of CL patients with neurologic involvement. Migration defects and corpus callosum hypoplasia were not always diagnostic for a specific genetic defect in CL. All patients with ATP6V0A2 defects had abnormal glycosylation. To conclude, central nervous system and metabolic abnormalities were discriminatory in this genetically heterogeneous group, although not always diagnostic for a certain genetic defect in CL.
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- 2014
18. P.476 - Muscle hyperthrophy with RYR1 mutation
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Chrestian, N., Lace, B., Gould, P., and Dionne, A.
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- 2017
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19. Risk of cancer in relatives of children born with isolated cleft lip and palate
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Vieira, AR, Khaliq, S, Lace, B, Vieira, AR, Khaliq, S, and Lace, B
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- 2012
20. Interaction between IRF6 and TGFA Genes Contribute to the Risk of Nonsyndromic Cleft Lip/Palate
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Letra, A, Fakhouri, W, Fonseca, RF, Menezes, R, Kempa, I, Prasad, JL, McHenry, TG, Lidral, AC, Moreno, L, Murray, JC, Daack-Hirsch, S, Marazita, ML, Castilla, EE, Lace, B, Orioli, IM, Granjeiro, JM, Schutte, BC, Vieira, AR, Letra, A, Fakhouri, W, Fonseca, RF, Menezes, R, Kempa, I, Prasad, JL, McHenry, TG, Lidral, AC, Moreno, L, Murray, JC, Daack-Hirsch, S, Marazita, ML, Castilla, EE, Lace, B, Orioli, IM, Granjeiro, JM, Schutte, BC, and Vieira, AR
- Abstract
Previous evidence from tooth agenesis studies suggested IRF6 and TGFA interact. Since tooth agenesis is commonly found in individuals with cleft lip/palate (CL/P), we used four large cohorts to evaluate if IRF6 and TGFA interaction contributes to CL/P. Markers within and flanking IRF6 and TGFA genes were tested using Taqman or SYBR green chemistries for case-control analyses in 1,000 Brazilian individuals. We looked for evidence of gene-gene interaction between IRF6 and TGFA by testing if markers associated with CL/P were overtransmitted together in the case-control Brazilian dataset and in the additional family datasets. Genotypes for an additional 142 case-parent trios from South America drawn from the Latin American Collaborative Study of Congenital Malformations (ECLAMC), 154 cases from Latvia, and 8,717 individuals from several cohorts were available for replication of tests for interaction. Tgfa and Irf6 expression at critical stages during palatogenesis was analyzed in wild type and Irf6 knockout mice. Markers in and near IRF6 and TGFA were associated with CL/P in the Brazilian cohort (p<10-6). IRF6 was also associated with cleft palate (CP) with impaction of permanent teeth (p<10-6). Statistical evidence of interaction between IRF6 and TGFA was found in all data sets (p = 0.013 for Brazilians; p = 0.046 for ECLAMC; p = 10-6 for Latvians, and p = 0.003 for the 8,717 individuals). Tgfa was not expressed in the palatal tissues of Irf6 knockout mice. IRF6 and TGFA contribute to subsets of CL/P with specific dental anomalies. Moreover, this potential IRF6-TGFA interaction may account for as much as 1% to 10% of CL/P cases. The Irf6-knockout model further supports the evidence of IRF6-TGFA interaction found in humans. © 2012 Letra et al.
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- 2012
21. Association studies of candidate genes and cleft lip and palate taking into consideration geographical origin
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Lace, B, Kempa, I, Piekuse, L, Grinfelde, I, Klovins, J, Pliss, L, Krumina, A, Vieira, AR, Lace, B, Kempa, I, Piekuse, L, Grinfelde, I, Klovins, J, Pliss, L, Krumina, A, and Vieira, AR
- Abstract
Isolated cleft lip and/or palate (CL/CLP) is a complex congenital anomaly with many contributing factors. There are several genes involved in the aetiology of CL/CLP, they are different in selected populations. In a previous study, the mitochondrial haplotypes of Latvian subjects with CL/CLP were characterized. Latvian subjects with CL/CLP have mostly mitochondrial haplogroups U4/U5 compared with the ethnic population of Latvia. The aim of this study was to stratify the results of genotyping based on European mitochondrial DNA (mtDNA) haplotypes. DNA samples from 108 patients with CL/CLP and from 182 unrelated and unaffected individuals selected randomly in Latvia (used as controls) were obtained for investigation. In this study, we analysed the data taking into consideration mitochondrial haplogroups and found that gene associations depended on the genetic origin of the population. The phenotype of patients with non-U haplotypes was associated with markers in wingless-type MMTV integration site family, member 3 (WNT3), collagen, type XI, alpha 2 (COL11A2), and fibroblast growth factor receptor 1 (FGFR1), whereas patients with U4 and U5 haplotypes showed significant association with WNT3 and COL11A2. It is unlikely that mtDNA variants play a direct role in the development of CL/CLP; rather, they may be a surrogate for population substructure and provide a tool to increase homogeneity and statistical power. © 2011 Eur J Oral Sci.
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- 2011
22. Mitochondrial DNA origins of the Latvian clefting population
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Vieira, AR, Pliss, L, Pelnena, I, Krumina, A, Baumanis, V, Lace, B, Vieira, AR, Pliss, L, Pelnena, I, Krumina, A, Baumanis, V, and Lace, B
- Abstract
Latvia has one of the highest prevalence of isolated cleft lip with or without cleft palate (CL/P) in Europe. To clarify the genetic origins of the Latvian cleft population and establish a method for genetic mapping, mitochondrial DNA variation was studied in a population affected with clefting. One-hundred and seven subjects and 351 samples from unrelated healthy volunteers representing four anthropologically, archaeologically and ethno-linguistically different regions of Latvia were selected. The case group showed a higher frequency of haplogroups U4 (p = 0.02) and U5 (p = 0.0003) than in non-U haplogroups. We hypothesize that U4 and U5 mtDNA haplotype carriers may also carry susceptibility genes for clefts. Future studies will take into consideration these definitions based on mtDNA haplotypes when analyzing genetic variations and their possible contribution to CL/P susceptibility. © 2010.
- Published
- 2011
23. Whole Xp Deletion in a Girl with Mental Retardation, Epilepsy, and Biochemical Features of OTC Deficiency
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Joost, K., primary, Tammur, P., additional, Teek, R., additional, Žilina, O., additional, Peters, M., additional, Kreile, M., additional, Lace, B., additional, Žordania, R., additional, Talvik, I., additional, and Õunap, K., additional
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- 2010
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24. PO26-TH-24 Experience of neuromuscular disease patients' care in Latvia
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Naudina, M.S.I., primary and Lace, B., additional
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- 2009
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25. G.P.15.12 Neuromuscular disease recognition rising awareness in Latvia
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Krumina, Z., primary, Grinfelde, I., additional, Pronina, N., additional, Lugovska, R., additional, and Lace, B., additional
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- 2008
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26. Evaluation of the susceptibility of pear cultivars to scab (venturia pirina aderh.)
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Lacisa, G., Lace, B., and Blukmanis, M.
27. Association of BMP4 polymorphisms with non-syndromic cleft lip with or without cleft palate and isolated cleft palate in Latvian and Lithuanian populations
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Kempa I, Laima Ambrozaityte, Stavusis J, Akota I, Barkane B, Krumina A, Matulevičienė A, Utkus A, Kučinskas V, and Lace B
28. Evaluation of european pear rust severity depending on agro-ecological factors
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Lace, B. and Biruta Bankina
29. RELATIONSHIP BETWEEN CARDIOVASCULAR PARAMETERS AND ACE GENE: PILOT STUDY.
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Aberberga-Augskalne, L., Rumaka, M., Lace, B., Piekuse, L., and Krumina, A.
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GENETIC polymorphisms - Abstract
An abstract of the article "Relationship Between Cardiovascular Parameters and ACE Gene: Pilot Study," by L. Aberberga-Augskalne, M. Rumaka, B. Lace, L. Piekuse, and A. Krumina is presented.
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- 2007
30. 279P Exploring myogenic tremor in an animal model of MYBPC1-associated myopathy: a comprehensive study.
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Inashkina, I., Zdanovica, A., Lunge, M., Zayakin, P., Upite, J., Dzirkale, Z., Alnis, J., Lace, B., Jansone, B., and Stavusis, J.
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CYTOSKELETAL proteins , *MUTANT proteins , *PHENOTYPIC plasticity , *OXIDATIVE phosphorylation , *GENETIC variation - Abstract
Congenital Myopathy with tremor, currently classified as Congenital Myopathy-16, represents a very rare disease phenotype, associated with domain-specific variants in the MYBPC1 gene. This gene encodes Myosin binding protein-C slow (sMyBP-C), a cytoskeletal protein expressed in skeletal muscle tissues with at least 10 different isoforms. This protein plays a crucial role in stabilizing the thick filament and regulating actin-myosin binding during cross-bridge formation. Previous research has suggested that observed sarcomeric deficits may underlie the molecular mechanisms causing the disease. We have created a mouse model for this disease, harboring a patient-specific variant (c.739T>C, p.(Y247H)). Here, we present a comprehensive description of the observed phenotype using a plethora of quantitative and qualitative methods, including behavioral tests, microscopy, protein quantification, biochemical assays including spectrophotometric measurements of OXPHOS enzyme activities, transcriptome analysis by RNA-seq, and proteomics. Our findings demonstrate strength deficits, myogenic tremor, and homozygous lethality in the model, as well as the localization of the mutant protein, similar to a previous model, carrying another patient-specific variant in the MYBPC1 gene. While we observed expected sarcomere disorder and misalignment, they were not as pronounced. Transcriptome data and biochemical assays unveil not only morphological abnormalities in mitochondria but also functional deficits in the oxidative phosphorylation system. This research reinforces the myogenic tremor phenotype observed in patients and the initial animal model, emphasizing the correlation between phenotypic severity and alterations in the binding potential of the mutant protein, as suggested in our previous work. Additionally, we provide evidence indicating mitochondrial dysregulation as a component of this disease. We thank ERAF Nr. 1.1.1.1/18/A/097. [ABSTRACT FROM AUTHOR]
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- 2024
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31. Genetic counselling legislation and practice in cancer in EU Member States.
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McCrary JM, Van Valckenborgh E, Poirel HA, de Putter R, van Rooij J, Horgan D, Dierks ML, Antonova O, Brunet J, Chirita-Emandi A, Colas C, Dalmas M, Ehrencrona H, Grima C, Janavičius R, Klink B, Koczok K, Krajc M, Lace B, Leitsalu L, Mistrik M, Paneque M, Primorac D, Roetzer KM, Ronez J, Slámová L, Spanou E, Stamatopoulos K, Stoklosa T, Strang-Karlsson S, Szakszon K, Szczałuba K, Turner J, van Dooren MF, van Zelst-Stams WAG, Vassallo LM, Wadt KAW, Žigman T, Ripperger T, Genuardi M, Van den Bulcke M, and Bergmann AK
- Subjects
- Humans, Genetic Testing legislation & jurisprudence, European Union, Genetic Counseling legislation & jurisprudence, Neoplasms genetics
- Abstract
Background: Somatic and germline genetic alterations are significant drivers of cancer. Increasing integration of new technologies which profile these alterations requires timely, equitable and high-quality genetic counselling to facilitate accurate diagnoses and informed decision-making by patients and their families in preventive and clinical settings. This article aims to provide an overview of genetic counselling legislation and practice across European Union (EU) Member States to serve as a foundation for future European recommendations and action., Methods: National legislative databases of all 27 Member States were searched using terms relevant to genetic counselling, translated as appropriate. Interviews with relevant experts from each Member State were conducted to validate legislative search results and provide detailed insights into genetic counselling practice in each country., Results: Genetic counselling is included in national legislative documents of 22 of 27 Member States, with substantial variation in legal mechanisms and prescribed details (i.e. the 'who, what, when and where' of counselling). Practice is similarly varied. Workforce capacity (25 of 27 Member States) and genetic literacy (all Member States) were common reported barriers. Recognition and/or better integration of genetic counsellors and updated legislation and were most commonly noted as the 'most important change' which would improve practice., Conclusions: This review highlights substantial variability in genetic counselling across EU Member States, as well as common barriers notwithstanding this variation. Future recommendations and action should focus on addressing literacy and capacity challenges through legislative, regulatory and/or strategic approaches at EU, national, regional and/or local levels., (© The Author(s) 2024. Published by Oxford University Press on behalf of the European Public Health Association.)
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- 2024
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32. The phenotypic spectrum of PTCD3 deficiency.
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Lace B, Faqeih E, Kaya N, Krumina Z, Mayr JA, Micule I, Wright NT, Achleitner MT, AlQudairy H, Pajusalu S, Stavusis J, Zayakin P, and Inashkina I
- Abstract
The PTCD3 gene product (protein PTCD3 or MRPS39) forms the entry channel of the mitochondrial small ribosomal subunit and binds to single-stranded mRNA. Here, we expand on the clinical manifestations of PTCD3 pathogenic variants by describing an early-onset patient with Leigh-like syndrome and two patients with milder form of disease, with combined oxidative phosphorylation deficiency. A 34-year-old male and his 33-year-old sister both have horizontal nystagmus, pronounced rough tremor, truncal ataxia, dysmetria, spasticity and hyperreflexia. The basal respiration rate decreased significantly for the male patient and his mother ( p < 0.0001) compared to the controls. The whole genome sequencing analysis revealed two heterozygous variants in the PTCD3 : c.1182T>A, p.(Tyr394Ter) and c.805C>T, p.(His269Tyr). Tyr394Ter variant ablates the C-terminal half of the protein, including a significant portion of the central fold. In silico modelling for the variant His269Tyr shows that the inclusion of the slightly larger tyrosine sidechain is well tolerated, with no significant change in either the position or the movement of the surrounding area. The third case is a 9-year-old boy, who has a global developmental delay, central hypotonia, hyperreflexia and abnormal MRI. PTCD3 pathogenic variant c.538+4A>G was identified by whole exome sequencing. To test the variant's effect on splicing, an RT-PCR experiment was performed, which revealed skipping of an out-of-frame exon 7., Competing Interests: The authors declare no conflicts of interest., (© 2024 The Authors. JIMD Reports published by John Wiley & Sons Ltd on behalf of SSIEM.)
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- 2024
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33. Unraveling the Pathogenetic Mechanisms Underlying the Association between Specific Mitochondrial DNA Haplogroups and Parkinson's Disease.
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Lan MY, Lin TK, Lace B, Utkus A, Burnyte B, Grigalioniene K, Lin YH, Inashkina I, and Liou CW
- Subjects
- Humans, Protein Phosphatase 1 genetics, Protein Phosphatase 1 metabolism, Mitochondria metabolism, Mitochondria genetics, Unfolded Protein Response genetics, Parkinson Disease genetics, DNA, Mitochondrial genetics, Haplotypes genetics
- Abstract
Variants of mitochondrial DNA (mtDNA) have been identified as risk factors for the development of Parkinson's disease (PD). However, the underlying pathogenetic mechanisms remain unclear. Cybrid models carrying various genotypes of mtDNA variants were tested for resistance to PD-simulating MPP
+ treatment. The most resistant line was selected for transcriptome profiling, revealing specific genes potentially influencing the resistant characteristic. We then conducted protein validation and molecular biological studies to validate the related pathways as the influential factor. Cybrids carrying the W3 mtDNA haplogroup demonstrated the most resistance to the MPP+ treatment. In the transcriptome study, PPP1R15A was identified, while further study noted elevated expressions of the coding protein GADD34 across all cybrids. In the study of GADD34-related mitochondrial unfolding protein response (mtUPR), we found that canonical mtUPR, launched by the phosphate eIF2a, is involved in the resistant characteristic of specific mtDNA to MPP+ treatment. Our study suggests that a lower expression of GADD34 in the late phase of mtUPR may prolong the mtUPR process, thereby benefitting protein homeostasis and facilitating cellular resistance to PD development. We herein demonstrate that GADD34 plays an important role in PD development and should be further investigated as a target for the development of therapies for PD.- Published
- 2024
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34. The recurrent deep intronic pseudoexon-inducing variant COL6A1 c.930+189C>T results in a consistently severe phenotype of COL6-related dystrophy: Towards clinical trial readiness for splice-modulating therapy.
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Foley AR, Bolduc V, Guirguis F, Donkervoort S, Hu Y, Orbach R, McCarty RM, Sarathy A, Norato G, Cummings BB, Lek M, Sarkozy A, Butterfield RJ, Kirschner J, Nascimento A, Benito DN, Quijano-Roy S, Stojkovic T, Merlini L, Comi G, Ryan M, McDonald D, Munot P, Yoon G, Leung E, Finanger E, Leach ME, Collins J, Tian C, Mohassel P, Neuhaus SB, Saade D, Cocanougher BT, Chu ML, Scavina M, Grosmann C, Richardson R, Kossak BD, Gospe SM Jr, Bhise V, Taurina G, Lace B, Troncoso M, Shohat M, Shalata A, Chan SHS, Jokela M, Palmio J, Haliloğlu G, Jou C, Gartioux C, Solomon-Degefa H, Freiburg CD, Schiavinato A, Zhou H, Aguti S, Nevo Y, Nishino I, Jimenez-Mallebrera C, Lamandé SR, Allamand V, Gualandi F, Ferlini A, MacArthur DG, Wilton SD, Wagener R, Bertini E, Muntoni F, and Bönnemann CG
- Abstract
Collagen VI-related dystrophies (COL6-RDs) manifest with a spectrum of clinical phenotypes, ranging from Ullrich congenital muscular dystrophy (UCMD), presenting with prominent congenital symptoms and characterised by progressive muscle weakness, joint contractures and respiratory insufficiency, to Bethlem muscular dystrophy, with milder symptoms typically recognised later and at times resembling a limb girdle muscular dystrophy, and intermediate phenotypes falling between UCMD and Bethlem muscular dystrophy. Despite clinical and immunohistochemical features highly suggestive of COL6-RD, some patients had remained without an identified causative variant in COL6A1 , COL6A2 or COL6A3 . With combined muscle RNA-sequencing and whole-genome sequencing we uncovered a recurrent, de novo deep intronic variant in intron 11 of COL6A1 (c.930+189C>T) that leads to a dominantly acting in-frame pseudoexon insertion. We subsequently identified and have characterised an international cohort of forty-four patients with this COL6A1 intron 11 causative variant, one of the most common recurrent causative variants in the collagen VI genes. Patients manifest a consistently severe phenotype characterised by a paucity of early symptoms followed by an accelerated progression to a severe form of UCMD, except for one patient with somatic mosaicism for this COL6A1 intron 11 variant who manifests a milder phenotype consistent with Bethlem muscular dystrophy. Characterisation of this individual provides a robust validation for the development of our pseudoexon skipping therapy. We have previously shown that splice-modulating antisense oligomers applied in vitro effectively decreased the abundance of the mutant pseudoexon-containing COL6A1 transcripts to levels comparable to the in vivo scenario of the somatic mosaicism shown here, indicating that this therapeutic approach carries significant translational promise for ameliorating the severe form of UCMD caused by this common recurrent COL6A1 causative variant to a Bethlem muscular dystrophy phenotype.
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- 2024
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35. Altered Splicing of LAMP2 in a Multigenerational Family from Latvia Affected by Danon Disease.
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Stavusis J, Micule I, Grinfelde I, Zdanovica A, Pudulis J, Valeina S, Sepetiene S, Lace B, and Inashkina I
- Subjects
- Humans, Male, Extended Family, Latvia, Myocardium, Genes, Regulator, Lysosomal-Associated Membrane Protein 2 genetics, Glycogen Storage Disease Type IIb genetics
- Abstract
Background and Objectives : Danon disease is a multisystemic disorder associated with variants in the LAMP2 gene, mainly affecting the cardiac muscle. Here, we report a multigenerational family from Latvia with two male patients, hemizygous for a novel splice-affecting variant c.928+3A>G. Affected patients exhibit a cardiac phenotype, moderate mental disability, and mild retinal changes. Materials and Methods : Both patients underwent either exome or hypertrophic cardiomyopathy gene panel next-generation sequencing. The pathogenic variant effect was determined using reverse transcription, Sanger sequencing, and high-resolution electrophoresis. Results : Evaluation of the splicing process revealed that approximately 80% of the transcripts exhibited a lack of the entire exon 7. This alteration was predicted to cause a shift of the reading frame, consequently introducing a premature stop codon downstream in the sequence. Conclusions : Based on our data, we propose that c.928+3A>G is a pathogenic variant associated with Danon disease.
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- 2024
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36. Genomic analyses in Cornelia de Lange Syndrome and related diagnoses: Novel candidate genes, genotype-phenotype correlations and common mechanisms.
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Kaur M, Blair J, Devkota B, Fortunato S, Clark D, Lawrence A, Kim J, Do W, Semeo B, Katz O, Mehta D, Yamamoto N, Schindler E, Al Rawi Z, Wallace N, Wilde JJ, McCallum J, Liu J, Xu D, Jackson M, Rentas S, Tayoun AA, Zhe Z, Abdul-Rahman O, Allen B, Angula MA, Anyane-Yeboa K, Argente J, Arn PH, Armstrong L, Basel-Salmon L, Baynam G, Bird LM, Bruegger D, Ch'ng GS, Chitayat D, Clark R, Cox GF, Dave U, DeBaere E, Field M, Graham JM Jr, Gripp KW, Greenstein R, Gupta N, Heidenreich R, Hoffman J, Hopkin RJ, Jones KL, Jones MC, Kariminejad A, Kogan J, Lace B, Leroy J, Lynch SA, McDonald M, Meagher K, Mendelsohn N, Micule I, Moeschler J, Nampoothiri S, Ohashi K, Powell CM, Ramanathan S, Raskin S, Roeder E, Rio M, Rope AF, Sangha K, Scheuerle AE, Schneider A, Shalev S, Siu V, Smith R, Stevens C, Tkemaladze T, Toimie J, Toriello H, Turner A, Wheeler PG, White SM, Young T, Loomes KM, Pipan M, Harrington AT, Zackai E, Rajagopalan R, Conlin L, Deardorff MA, McEldrew D, Pie J, Ramos F, Musio A, Kline AD, Izumi K, Raible SE, and Krantz ID
- Subjects
- Humans, Transcription Factors genetics, Cell Cycle Proteins genetics, Phenotype, Mutation, Genomics, Genetic Association Studies, Transcriptional Elongation Factors genetics, Histone Deacetylases genetics, Repressor Proteins genetics, Nuclear Proteins genetics, De Lange Syndrome diagnosis, De Lange Syndrome genetics, De Lange Syndrome pathology
- Abstract
Cornelia de Lange Syndrome (CdLS) is a rare, dominantly inherited multisystem developmental disorder characterized by highly variable manifestations of growth and developmental delays, upper limb involvement, hypertrichosis, cardiac, gastrointestinal, craniofacial, and other systemic features. Pathogenic variants in genes encoding cohesin complex structural subunits and regulatory proteins (NIPBL, SMC1A, SMC3, HDAC8, and RAD21) are the major pathogenic contributors to CdLS. Heterozygous or hemizygous variants in the genes encoding these five proteins have been found to be contributory to CdLS, with variants in NIPBL accounting for the majority (>60%) of cases, and the only gene identified to date that results in the severe or classic form of CdLS when mutated. Pathogenic variants in cohesin genes other than NIPBL tend to result in a less severe phenotype. Causative variants in additional genes, such as ANKRD11, EP300, AFF4, TAF1, and BRD4, can cause a CdLS-like phenotype. The common role that these genes, and others, play as critical regulators of developmental transcriptional control has led to the conditions they cause being referred to as disorders of transcriptional regulation (or "DTRs"). Here, we report the results of a comprehensive molecular analysis in a cohort of 716 probands with typical and atypical CdLS in order to delineate the genetic contribution of causative variants in cohesin complex genes as well as novel candidate genes, genotype-phenotype correlations, and the utility of genome sequencing in understanding the mutational landscape in this population., (© 2023 Wiley Periodicals LLC.)
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- 2023
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37. RPG acts as a central determinant for infectosome formation and cellular polarization during intracellular rhizobial infections.
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Lace B, Su C, Invernot Perez D, Rodriguez-Franco M, Vernié T, Batzenschlager M, Egli S, Liu CW, and Ott T
- Subjects
- Symbiosis, Cell Nucleus, Cell Wall, Rhizobium, Nitrogen-Fixing Bacteria
- Abstract
Host-controlled intracellular accommodation of nitrogen-fixing bacteria is essential for the establishment of a functional Root Nodule Symbiosis (RNS). In many host plants, this occurs via transcellular tubular structures (infection threads - ITs) that extend across cell layers via polar tip-growth. Comparative phylogenomic studies have identified RPG ( RHIZOBIUM-DIRECTED POLAR GROWTH ) among the critical genetic determinants for bacterial infection. In Medicago truncatula , RPG is required for effective IT progression within root hairs but the cellular and molecular function of the encoded protein remains elusive. Here, we show that RPG resides in the protein complex formed by the core endosymbiotic components VAPYRIN (VPY) and LUMPY INFECTION (LIN) required for IT polar growth, co-localizes with both VPY and LIN in IT tip- and perinuclear-associated puncta of M. truncatula root hairs undergoing infection and is necessary for VPY recruitment into these structures. Fluorescence Lifetime Imaging Microscopy (FLIM) of phosphoinositide species during bacterial infection revealed that functional RPG is required to sustain strong membrane polarization at the advancing tip of the IT. In addition, loss of RPG functionality alters the cytoskeleton-mediated connectivity between the IT tip and the nucleus and affects the polar secretion of the cell wall modifying enzyme NODULE PECTATE LYASE (NPL). Our results integrate RPG into a core host machinery required to support symbiont accommodation, suggesting that its occurrence in plant host genomes is essential to co-opt a multimeric protein module committed to endosymbiosis to sustain IT-mediated bacterial infection., Competing Interests: BL, CS, DI, MR, TV, MB, SE, CL, TO No competing interests declared, (© 2023, Lace et al.)
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- 2023
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38. Impact of the m.13513G>A Variant on the Functions of the OXPHOS System and Cell Retrograde Signaling.
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Kidere D, Zayakin P, Livcane D, Makrecka-Kuka M, Stavusis J, Lace B, Lin TK, Liou CW, and Inashkina I
- Abstract
Mitochondria are involved in many vital functions in living cells, including the synthesis of ATP by oxidative phosphorylation (OXPHOS) and regulation of nuclear gene expression through retrograde signaling. Leigh syndrome is a heterogeneous neurological disorder resulting from an isolated complex I deficiency that causes damage to mitochondrial energy production. The pathogenic mitochondrial DNA (mtDNA) variant m.13513G>A has been associated with Leigh syndrome. The present study investigated the effects of this mtDNA variant on the OXPHOS system and cell retrograde signaling. Transmitochondrial cytoplasmic hybrid (cybrid) cell lines harboring 50% and 70% of the m.13513G>A variant were generated and tested along with wild-type (WT) cells. The functionality of the OXPHOS system was evaluated by spectrophotometric assessment of enzyme activity and high-resolution respirometry. Nuclear gene expression was investigated by RNA sequencing and droplet digital PCR. Increasing levels of heteroplasmy were associated with reduced OXPHOS system complex I, IV, and I + III activities, and high-resolution respirometry also showed a complex I defect. Profound changes in transcription levels of nuclear genes were observed in the cell lines harboring the pathogenic mtDNA variant, indicating the physiological processes associated with defective mitochondria.
- Published
- 2023
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39. The most common European HINT1 neuropathy variant phenotype and its case studies.
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Rozevska M, Rots D, Gailite L, Linde R, Mironovs S, Timcenko M, Linovs V, Locmele D, Micule I, Lace B, and Kenina V
- Abstract
HINT1 is an ubiquitous homodimeric purine phosphoramidase belonging to the histidine-triad superfamily. In neurons, HINT1 stabilizes the interaction of different receptors and regulates the effects of their signaling disturbances. Changes in HINT1 gene are associated with autosomal recessive axonal neuropathy with neuromyotonia. Aim of the study was detailed description of patients' phenotype with HINT1 homozygous NM_005340.7: c.110G>C (p.Arg37Pro) variant. Seven homozygous and three compound heterozygous patients were recruited and evaluated using standardized tests for CMT patients, in four patients' nerve ultrasonography was performed. The median age of symptom onset was 10 years (range 1-20), with initial complaints being distal lower limb weakness with gait impairment, combined with muscle stiffness, more pronounced in the hands than in the legs and worsened by cold. Arm muscles became involved later, presenting with distal weakness and hypotrophy. Neuromyotonia was present in all reported patients and is thus a diagnostic hallmark. Electrophysiological studies demonstrated axonal polyneuropathy. Impaired mental performance was observed in six out of ten cases. In all patients with HINT1 neuropathy, ultrasound examination showed significantly reduced muscle volume as well as spontaneous fasciculations and fibrillations. The nerve cross-sectional areas of the median and ulnar nerves were closer to the lower limits of the normal values. None of the investigated nerves had structural changes. Our findings broaden the phenotype of HINT1 -neuropathy and have implications for diagnostics and ultrasonographic evaluation of HINT1 -neuropathy patients., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Rozevska, Rots, Gailite, Linde, Mironovs, Timcenko, Linovs, Locmele, Micule, Lace and Kenina.)
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- 2023
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40. Stabilization of membrane topologies by proteinaceous remorin scaffolds.
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Su C, Rodriguez-Franco M, Lace B, Nebel N, Hernandez-Reyes C, Liang P, Schulze E, Mymrikov EV, Gross NM, Knerr J, Wang H, Siukstaite L, Keller J, Libourel C, Fischer AAM, Gabor KE, Mark E, Popp C, Hunte C, Weber W, Wendler P, Stanislas T, Delaux PM, Einsle O, Grosse R, Römer W, and Ott T
- Subjects
- Plant Proteins metabolism, Plants metabolism, Symbiosis, Carrier Proteins metabolism, Phosphoproteins metabolism
- Abstract
In plants, the topological organization of membranes has mainly been attributed to the cell wall and the cytoskeleton. Additionally, few proteins, such as plant-specific remorins have been shown to function as protein and lipid organizers. Root nodule symbiosis requires continuous membrane re-arrangements, with bacteria being finally released from infection threads into membrane-confined symbiosomes. We found that mutations in the symbiosis-specific SYMREM1 gene result in highly disorganized perimicrobial membranes. AlphaFold modelling and biochemical analyses reveal that SYMREM1 oligomerizes into antiparallel dimers and may form a higher-order membrane scaffolding structure. This was experimentally confirmed when expressing this and other remorins in wall-less protoplasts is sufficient where they significantly alter and stabilize de novo membrane topologies ranging from membrane blebs to long membrane tubes with a central actin filament. Reciprocally, mechanically induced membrane indentations were equally stabilized by SYMREM1. Taken together we describe a plant-specific mechanism that allows the stabilization of large-scale membrane conformations independent of the cell wall., (© 2023. The Author(s).)
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- 2023
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41. CAPN3 c.1746-20C>G variant is hypomorphic for LGMD R1 calpain 3-related.
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Mroczek M, Inashkina I, Stavusis J, Zayakin P, Khrunin A, Micule I, Kenina V, Zdanovica A, Zídková J, Fajkusová L, Limborska S, van der Kooi AJ, Brusse E, Leonardis L, Maver A, Pajusalu S, Õunap K, Puusepp S, Dobosz P, Sypniewski M, Burnyte B, and Lace B
- Subjects
- Humans, Mutation, RNA Splicing, Calpain genetics, Muscle Proteins genetics, Muscular Dystrophies, Limb-Girdle genetics
- Abstract
The investigated intronic CAPN3 variant NM_000070.3:c.1746-20C>G occurs in the Central and Eastern Europe with a frequency of >1% and there are conflicting interpretations on its pathogenicity. We collected data on 14 patients carrying the CAPN3 c.1746-20C>G variant in trans position with another CAPN3 pathogenic/likely pathogenic variant. The patients compound heterozygous for the CAPN3 c.1746-20C>G variant presented a phenotype consistent with calpainopathy of mild/medium severity. This variant is most frequent in the North/West regions of Russia and may originate from that area. Molecular studies revealed that different splicing isoforms are produced in the muscle. We hypothesize that c.1746-20C>G is a hypomorphic variant with a reduction of RNA and protein expression and only individuals having a higher ratio of abnormal isoforms are affected. Reclassification of the CAPN3 variant c.1746-20C>G from variant with a conflicting interpretation of pathogenicity to hypomorphic variant explains many unidentified cases of limb girdle muscular dystrophy R1 calpain 3-related in Eastern and Central Europe., (© 2022 Wiley Periodicals LLC.)
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- 2022
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42. Overview of Neuromuscular Disorder Molecular Diagnostic Experience for the Population of Latvia.
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Lace B, Micule I, Kenina V, Setlere S, Strautmanis J, Kazaine I, Taurina G, Murmane D, Grinfelde I, Kornejeva L, Krumina Z, Sterna O, Radovica-Spalvina I, Vasiljeva I, Gailite L, Stavusis J, Livcane D, Kidere D, Malniece I, and Inashkina I
- Abstract
Background and Objectives: Genetic testing has become an integral part of health care, allowing the confirmation of thousands of hereditary diseases, including neuromuscular disorders (NMDs). The reported average prevalence of individual inherited NMDs is 3.7-4.99 per 10,000. This number varies greatly in the selected populations after applying population-wide studies. The aim of this study was to evaluate the effect of genetic analysis as the first-tier test in patients with NMD and to calculate the disease prevalence and allelic frequencies for reoccurring genetic variants., Methods: Patients with NMD from Latvia with molecular tests confirming their diagnosis in 2008-2020 were included in this retrospective study., Results: Diagnosis was confirmed in 153 unique cases of all persons tested. Next-generation sequencing resulted in a detection rate of 37%. Two of the most common childhood-onset NMDs in our population were spinal muscular atrophy and dystrophinopathies, with a birth prevalence of 1.01 per 10,000 newborns and 2.08 per 10,000 (male newborn population), respectively. The calculated point prevalence was 0.079 per 10,000 for facioscapulohumeral muscular dystrophy type 1, 0.078 per 10,000 for limb-girdle muscular dystrophy, 0.073 per 10,000 for nondystrophic congenital myotonia, 0.052 per 10,000 for spinobulbar muscular atrophy, and 0.047 per 10,000 for type 1 myotonic dystrophy., Discussion: DNA diagnostics is a successful approach. The carrier frequencies of the common CAPN3 , FKRP , SPG11 , and HINT1 gene variants as well as that of the SMN1 gene exon 7 deletion in the population of Latvia are comparable with data from Europe. The carrier frequency of the CLCN1 gene variant c.2680C>T p.(Arg894Ter) is 2.11%, and consequently, congenital myotonia is the most frequent NMD in our population., (Copyright © 2022 The Author(s). Published by Wolters Kluwer Health, Inc. on behalf of the American Academy of Neurology.)
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- 2022
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43. Monogenic Versus Multifactorial Inheritance in the Development of Isolated Cleft Palate: A Whole Genome Sequencing Study.
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Lace B, Pajusalu S, Livcane D, Grinfelde I, Akota I, Mauliņa I, Barkāne B, Stavusis J, and Inashkina I
- Abstract
Craniofacial morphogenesis is highly complex, as is the anatomical region involved. Errors during this process, resulting in orofacial clefts, occur in more than 400 genetic syndromes. Some cases of cleft lip and/or palate (CLP) are caused by mutations in single genes; however, complex interactions between genetic and environmental factors are considered to be responsible for the majority of non-syndromic CLP development. The aim of the current study was to identify genetic risk factors in patients with isolated cleft palate (CP) by whole genome sequencing. Patients with isolated CP ( n = 30) recruited from the Riga Cleft Lip and Palate Centre, Institute of Stomatology, Riga, were analyzed by whole genome sequencing. Pathogenic or likely pathogenic variants were discovered in genes associated with CP ( TBX22 , COL2A1 , FBN1 , PCGF2 , and KMT2D ) in five patients; hence, rare disease variants were identified in 17% of patients with non-syndromic isolated CP. Our results were relevant to routine genetic counselling practice and genetic testing recommendations. Based on our data, we propose that all newborns with orofacial clefts should be offered genetic testing, at least for a panel of known CLP genes. Only if the results are negative and there is no suggestive family history or additional clinical symptoms (which would support additional exome or genome-wide investigation), should multifactorial empiric recurrence risk prediction tools be applied for families., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Lace, Pajusalu, Livcane, Grinfelde, Akota, Mauliņa, Barkāne, Stavusis and Inashkina.)
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- 2022
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44. Case Report: Two Families With HPDL Related Neurodegeneration.
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Micule I, Lace B, Wright NT, Chrestian N, Strautmanis J, Diriks M, Stavusis J, Kidere D, Kleina E, Zdanovica A, Laflamme N, Rioux N, Setty ST, Pajusalu S, Droit A, Lek M, Rivest S, and Inashkina I
- Abstract
There are recent reports of associations of variants in the HPDL gene with a hereditary neurological disease that presents with a wide spectrum of clinical severity, ranging from severe neonatal encephalopathy with no psychomotor development to adolescent-onset uncomplicated spastic paraplegia. Here, we report two probands from unrelated families presenting with severe and intermediate variations of the clinical course. A homozygous variant in the HPDL gene was detected in each proband; however, there was no known parental consanguinity. We also highlight reductions in citrate synthase and mitochondrial complex I activity detected in both probands in different tissues, reflecting the previously proposed mitochondrial nature of disease pathogenesis associated with HPDL mutations. Further, we speculate on the functional consequences of the detected variants, although the function and substrate of the HPDL enzyme are currently unknown., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The reviewer AL declared a past collaboration with one of the authors ML/ to the handling editor., (Copyright © 2022 Micule, Lace, Wright, Chrestian, Strautmanis, Diriks, Stavusis, Kidere, Kleina, Zdanovica, Laflamme, Rioux, Setty, Pajusalu, Droit, Lek, Rivest and Inashkina.)
- Published
- 2022
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45. Formin-mediated bridging of cell wall, plasma membrane, and cytoskeleton in symbiotic infections of Medicago truncatula.
- Author
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Liang P, Schmitz C, Lace B, Ditengou FA, Su C, Schulze E, Knerr J, Grosse R, Keller J, Libourel C, Delaux PM, and Ott T
- Subjects
- Actins, Cell Membrane, Cell Wall, Formins, Microtubules, Plant Proteins genetics, Plant Roots, Symbiosis, Medicago truncatula genetics, Rhizobium
- Abstract
Legumes have maintained the ability to associate with rhizobia to sustain the nitrogen-fixing root nodule symbiosis (RNS). In Medicago truncatula, the Nod factor (NF)-dependent intracellular root colonization by Sinorhizobium meliloti initiates from young, growing root hairs. They form rhizobial traps by physically curling around the symbiont.
1 , 2 Although alterations in root hair morphology like branching and swelling have been observed in other plants in response to drug treatments3 or genetic perturbations,4-6 full root hair curling represents a rather specific invention in legumes. The entrapment of the symbiont completes with its full enclosure in a structure called the "infection chamber" (IC),1 , 2 , 7 , 8 from which a tube-like membrane channel, the "infection thread" (IT), initiates.1 , 2 , 9 All steps of rhizobium-induced root hair alterations are aided by a tip-localized cytosolic calcium gradient,10 , 11 global actin re-arrangements, and dense subapical fine actin bundles that are required for the delivery of Golgi-derived vesicles to the root hair tip.7 , 12-14 Altered actin dynamics during early responses to NFs or rhizobia have mostly been shown in mutants that are affected in the actin-related SCAR/WAVE complex.15-18 Here, we identified a polarly localized SYMBIOTIC FORMIN 1 (SYFO1) to be required for NF-dependent alterations in membrane organization and symbiotic root hair responses. We demonstrate that SYFO1 mediates a continuum between the plasma membrane and the cell wall that is required for the onset of rhizobial infections., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 The Author(s). Published by Elsevier Inc. All rights reserved.)- Published
- 2021
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46. A Homozygous Deep Intronic Mutation Alters the Splicing of Nebulin Gene in a Patient With Nemaline Myopathy.
- Author
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Laflamme N, Lace B, Thonta Setty S, Rioux N, Labrie Y, Droit A, Chrestian N, and Rivest S
- Abstract
Nemaline myopathy is a rare disorder affecting the muscle sarcomere. Mutations in nebulin gene ( NEB ) are known to be responsible for about 50% of nemaline myopathy cases. Nebulin is a giant protein which is formed integrally with the sarcomeric thin filament. This complex gene is under extensive alternative splicing giving rise to multiple isoforms. In this study, we report a 6-year-old boy presenting with general muscular weaknesses. Identification of rod-shaped structures in the patient' biopsy raised doubt about the presence of a nemaline myopathy. Next-generation sequencing was used to identify a causative mutation for the patient syndrome. A homozygous deep intronic substitution was found in the intron 144 of the NEB . The variant was predicted by in silico tools to create a new donor splice site. Molecular analysis has shown that the mutation could alter splicing events of the nebulin gene leading to a significant decrease of isoforms level. This change in the expression level of nebulin could give rise to functional consequences in the sarcomere. These results are consistent with the phenotypes observed in the patient. Such a discovery of variants in this gene will allow a better understanding of the involvement of nebulin in neuromuscular diseases and help find new treatments for the nemaline myopathy., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Laflamme, Lace, Thonta Setty, Rioux, Labrie, Droit, Chrestian and Rivest.)
- Published
- 2021
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47. EIF2AK2 Missense Variants Associated with Early Onset Generalized Dystonia.
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Kuipers DJS, Mandemakers W, Lu CS, Olgiati S, Breedveld GJ, Fevga C, Tadic V, Carecchio M, Osterman B, Sagi-Dain L, Wu-Chou YH, Chen CC, Chang HC, Wu SL, Yeh TH, Weng YH, Elia AE, Panteghini C, Marotta N, Pauly MG, Kühn AA, Volkmann J, Lace B, Meijer IA, Kandaswamy K, Quadri M, Garavaglia B, Lohmann K, Bauer P, Mencacci NE, Lubbe SJ, Klein C, Bertoli-Avella AM, and Bonifati V
- Subjects
- Adolescent, Adult, Age of Onset, Asian People, Brain diagnostic imaging, Child, Child, Preschool, Dystonic Disorders metabolism, Dystonic Disorders physiopathology, Female, Genome-Wide Association Study, Humans, Infant, Magnetic Resonance Imaging, Male, Middle Aged, Mutation, Missense, Pedigree, White People, Exome Sequencing, Young Adult, eIF-2 Kinase metabolism, Dystonic Disorders genetics, Fibroblasts metabolism, eIF-2 Kinase genetics
- Abstract
Objective: The study was undertaken to identify a monogenic cause of early onset, generalized dystonia., Methods: Methods consisted of genome-wide linkage analysis, exome and Sanger sequencing, clinical neurological examination, brain magnetic resonance imaging, and protein expression studies in skin fibroblasts from patients., Results: We identified a heterozygous variant, c.388G>A, p.Gly130Arg, in the eukaryotic translation initiation factor 2 alpha kinase 2 (EIF2AK2) gene, segregating with early onset isolated generalized dystonia in 5 patients of a Taiwanese family. EIF2AK2 sequencing in 191 unrelated patients with unexplained dystonia yielded 2 unrelated Caucasian patients with an identical heterozygous c.388G>A, p.Gly130Arg variant, occurring de novo in one case, another patient carrying a different heterozygous variant, c.413G>C, p.Gly138Ala, and one last patient, born from consanguineous parents, carrying a third, homozygous variant c.95A>C, p.Asn32Thr. These 3 missense variants are absent from gnomAD, and are located in functional domains of the encoded protein. In 3 patients, additional neurological manifestations were present, including intellectual disability and spasticity. EIF2AK2 encodes a kinase (protein kinase R [PKR]) that phosphorylates eukaryotic translation initiation factor 2 alpha (eIF2α), which orchestrates the cellular stress response. Our expression studies showed abnormally enhanced activation of the cellular stress response, monitored by PKR-mediated phosphorylation of eIF2α, in fibroblasts from patients with EIF2AK2 variants. Intriguingly, PKR can also be regulated by PRKRA (protein interferon-inducible double-stranded RNA-dependent protein kinase activator A), the product of another gene causing monogenic dystonia., Interpretation: We identified EIF2AK2 variants implicated in early onset generalized dystonia, which can be dominantly or recessively inherited, or occur de novo. Our findings provide direct evidence for a key role of a dysfunctional eIF2α pathway in the pathogenesis of dystonia. ANN NEUROL 2021;89:485-497., (© 2020 The Authors. Annals of Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association.)
- Published
- 2021
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48. A founder mutation in the PLPBP gene in families from Saguenay-Lac-St-Jean region affected by a pyridoxine-dependent epilepsy.
- Author
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Pal M, Lace B, Labrie Y, Laflamme N, Rioux N, Setty ST, Dugas MA, Gosselin L, Droit A, Chrestian N, and Rivest S
- Abstract
Pyridoxine-dependent epilepsy (PDE) is a relatively rare subgroup of epileptic disorders. They generally present in infancy as an early onset epileptic encephalopathy or seizures, refractory to standard treatments, with rapid and variable responses to vitamin B6 treatment. Whole exome sequencing of three unrelated families identified homozygous pathogenic mutation c.370_373del, p.Asp124fs in PLPBP gene in five persons. Haplotype analysis showed a single shared profile for the affected persons and their parents, leading to a hypothesis about founder effect of the mutation in Saguenay-Lac-St-Jean region of French Canadians. All affected probands also shared one single mitochondrial haplotype T2b3 and two rare variations in the mitochondrial genome m.801A>G and m.5166A>G suggesting that a single individual female introduced PLPBP mutation c.370_373del, p.Asp124fs in Quebec. The mutation p.Asp124fs causes a severe disease phenotype with delayed myelination and cortical/subcortical brain atrophy. The most noteworthy radiological finding in this Quebec founder mutation is the presence of the temporal cysts that can be used as a marker of the disease. Also, both patients, who are alive, had a history of prenatal supplements taken by their mothers as antiemetic medication with high doses of pyridoxine. In the context of suspected PDE in patients with neonatal refractory seizures, treatment with pyridoxine and/or Pyridoxal-5-phophate has to be started immediately and continued until the results of genetic analysis received. Even with early appropriate treatment, neurological outcome of our patient is still poor., Competing Interests: The authors declare no potential conflict of interest., (© 2021 The Authors. JIMD Reports published by John Wiley & Sons Ltd on behalf of SSIEM.)
- Published
- 2021
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49. A second cohort of CHD3 patients expands the molecular mechanisms known to cause Snijders Blok-Campeau syndrome.
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Drivas TG, Li D, Nair D, Alaimo JT, Alders M, Altmüller J, Barakat TS, Bebin EM, Bertsch NL, Blackburn PR, Blesson A, Bouman AM, Brockmann K, Brunelle P, Burmeister M, Cooper GM, Denecke J, Dieux-Coëslier A, Dubbs H, Ferrer A, Gal D, Bartik LE, Gunderson LB, Hasadsri L, Jain M, Karimov C, Keena B, Klee EW, Kloth K, Lace B, Macchiaiolo M, Marcadier JL, Milunsky JM, Napier MP, Ortiz-Gonzalez XR, Pichurin PN, Pinner J, Powis Z, Prasad C, Radio FC, Rasmussen KJ, Renaud DL, Rush ET, Saunders C, Selcen D, Seman AR, Shinde DN, Smith ED, Smol T, Snijders Blok L, Stoler JM, Tang S, Tartaglia M, Thompson ML, van de Kamp JM, Wang J, Weise D, Weiss K, Woitschach R, Wollnik B, Yan H, Zackai EH, Zampino G, Campeau P, and Bhoj E
- Subjects
- Adolescent, Adult, Catalytic Domain, Child, Child, Preschool, Craniofacial Abnormalities pathology, DNA Helicases chemistry, Developmental Disabilities pathology, Female, Humans, Infant, Intellectual Disability pathology, Male, Mi-2 Nucleosome Remodeling and Deacetylase Complex chemistry, Mutation, Phenotype, Syndrome, Craniofacial Abnormalities genetics, DNA Helicases genetics, Developmental Disabilities genetics, Intellectual Disability genetics, Mi-2 Nucleosome Remodeling and Deacetylase Complex genetics
- Abstract
There has been one previous report of a cohort of patients with variants in Chromodomain Helicase DNA-binding 3 (CHD3), now recognized as Snijders Blok-Campeau syndrome. However, with only three previously-reported patients with variants outside the ATPase/helicase domain, it was unclear if variants outside of this domain caused a clinically similar phenotype. We have analyzed 24 new patients with CHD3 variants, including nine outside the ATPase/helicase domain. All patients were detected with unbiased molecular genetic methods. There is not a significant difference in the clinical or facial features of patients with variants in or outside this domain. These additional patients further expand the clinical and molecular data associated with CHD3 variants. Importantly we conclude that there is not a significant difference in the phenotypic features of patients with various molecular disruptions, including whole gene deletions and duplications, and missense variants outside the ATPase/helicase domain. This data will aid both clinical geneticists and molecular geneticists in the diagnosis of this emerging syndrome.
- Published
- 2020
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50. Collagen VI-related limb-girdle syndrome caused by frequent mutation in COL6A3 gene with conflicting reports of pathogenicity.
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Stavusis J, Micule I, Wright NT, Straub V, Topf A, Panadés-de Oliveira L, Domínguez-González C, Inashkina I, Kidere D, Chrestian N, and Lace B
- Subjects
- Adult, Female, Humans, Male, Middle Aged, Muscular Dystrophies diagnostic imaging, Muscular Dystrophies genetics, Muscular Dystrophies pathology, Muscular Dystrophies physiopathology, Pedigree, Exome Sequencing, Collagen Type VI genetics, Contracture diagnostic imaging, Contracture genetics, Contracture pathology, Contracture physiopathology, Muscular Dystrophies congenital, Sclerosis diagnostic imaging, Sclerosis genetics, Sclerosis pathology, Sclerosis physiopathology
- Abstract
Recently the scientific community has started to view Bethlem myopathy 1 and Ullrich congenital muscular dystrophy as two extremes of a collagen VI-related myopathy spectrum rather than two separate entities, as both are caused by mutations in one of the collagen VI genes. Here we report three individuals in two families who are homozygous for a COL6A3 mutation (c.7447A> G; p.Lys2483Glu), and compare their clinical features with seven previously published cases. Individuals carrying homozygous or compound heterozygous c.7447A> G, (p.Lys2483Glu) mutation exhibit mild phenotype without loss of ambulation, similar to the cases described previously as Collagen VI-related limb-girdle syndrome. The phenotype could arise due to an aberrant assembly of Von Willebrand factor A domains. Based on these data, we propose that c.7447A> G, (p.Lys2483Glu) is a common pathogenic mutation., (Copyright © 2020 Elsevier B.V. All rights reserved.)
- Published
- 2020
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