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2. On demand delivery and analysis of single molecules on a programmable nanopore-optofluidic device.

Author

Rahman, M, Stott, M, Harrington, M, Li, Y, Sampad, M, Lancaster, L, Yuzvinsky, T, Noller, H, Hawkins, A, and Schmidt, H

Subjects
DNA, Escherichia coli, Lab-On-A-Chip Devices, Nanopores, Optical Devices, Ribosomes, Single Molecule Imaging
Abstract

Nanopore-based single nanoparticle detection has recently emerged as a vibrant research field with numerous high-impact applications. Here, we introduce a programmable optofluidic chip for nanopore-based particle analysis: feedback-controlled selective delivery of a desired number of biomolecules and integration of optical detection techniques on nanopore-selected particles. We demonstrate the feedback-controlled introduction of individual biomolecules, including 70S ribosomes, DNAs and proteins into a fluidic channel where the voltage across the nanopore is turned off after a user-defined number of single molecular insertions. Delivery rates of hundreds/min with programmable off-times of the pore are demonstrated using individual 70S ribosomes. We then use real-time analysis of the translocation signal for selective voltage gating of specific particles from a mixture, enabling selection of DNAs from a DNA-ribosome mixture. Furthermore, we report optical detection of nanopore-selected DNA molecules. These capabilities point the way towards a powerful research tool for high-throughput single-molecule analysis on a chip.

Published
2019

3. Suspected acute exacerbation of idiopathic pulmonary fibrosis as an outcome measure in clinical trials

Author

Collard, HR, Yow, E, Richeldi, L, Anstrom, KJ, Glazer, C, Schwarz, M, Zisman, DA, Hunninghake, G, Chapman, J, Olman, M, Lubell, S, Morrison, LD, Steele, MP, Haram, T, Roman, J, Perez, R, Perez, T, Ryu, JH, Utz, JP, Limper, AH, Daniels, CE, Meiras, K, Walsh, S, Brown, KK, Bair, C, Kervitsky, D, Lasky, JA, Ditta, S, De Andrade, J, Thannickal, VJ, Stewart, M, Lynch, J, Calahan, E, Lopez, P, King, TE, Golden, JA, Wolters, PJ, Jeffrey, R, Noth, I, Hogarth, DK, Sandbo, N, Strek, ME, White, SR, Brown, C, Garic, I, Maleckar, S, Martinez, FJ, Flaherty, KR, Han, M, Moore, B, Toews, GB, Dahlgren, D, Raghu, G, Hayes, J, Snyder, M, Loyd, JE, Lancaster, L, Lawson, W, Greer, R, Mason, W, Kaner, RJ, Monroy, V, Wang, M, Lynch, DA, Colby, T, Becker, RC, Eisenstein, EL, MacIntyre, NR, Rochon, J, Sundy, JS, Davidson-Ray, L, Dignacco, P, Edwards, R, Anderson, R, Beci, R, Calvert, S, Cain, K, Gentry-Bumpass, T, Hill, D, Ingham, M, Kagan, E, Kaur, J, Matti, C, McClelland, J, Meredith, A, Nguyen, T, Pesarchick, J, Roberts, RS, Tate, W, Thomas, T, Walker, J, Whelan, D, Winsor, J, Yang, Q, and Reynolds, HY

Abstract

Background: Acute exacerbation of idiopathic pulmonary fibrosis has become an important outcome measure in clinical trials. This study aimed to explore the concept of suspected acute exacerbation as an outcome measure.Methods: Three investigators retrospectively reviewed subjects enrolled in the Sildenafil Trial of Exercise Performance in IPF who experienced a respiratory serious adverse event during the course of the study. Events were classified as definite acute exacerbation, suspected acute exacerbation, or other, according to established criteria.Results: Thirty-five events were identified. Four were classified as definite acute exacerbation, fourteen as suspected acute exacerbation, and seventeen as other. Definite and suspected acute exacerbations were clinically indistinguishable. Both were most common in the winter and spring months and were associated with a high risk of disease progression and short-term mortality.Conclusions: In this study one half of respiratory serious adverse events were attributed to definite or suspected acute exacerbations. Suspected acute exacerbations are clinically indistinguishable from definite acute exacerbations and represent clinically meaningful events. Clinical trialists should consider capturing both definite and suspected acute exacerbations as outcome measures. © 2013 Collard et al.; licensee BioMed Central Ltd.

Published
2013

5. Ziritaxestat, a novel autotaxin inhibitor, and lung function in idiopathic pulmonary fibrosis

Author

Maher, TM, Ford, P, Brown, KK, Costabel, U, Cottin, V, Danoff, SK, Groenveld, I, Helmer, E, Jenkins, RG, Milner, J, Molenberghs, G, Penninckx, B, Randall, MJ, Van Den Blink, B, Fieuw, A, Vandenrijn, C, Rocak, S, Seghers, I, Shao, L, Taneja, A, Jentsch, G, Watkins, TR, Wuyts, WA, Kreuter, M, Verbruggen, N, Prasad, N, Wijsenbeek, MS, Chambers, D, Chia, M, Corte, T, Glaspole, I, Goh, N, Holmes, M, Malouf, M, Thien, F, Veitch, E, Bondue, B, Dahlqvist, C, Froidure, A, Slabbynck, H, Wuyts, W, Cartagena Salinas, C, Feijoó Seoane, R, Martínez, V, Maturana, R, Pavie Gallegos, J, Rosenblut, A, Silva, R, Undurraga Pereira, A, Doubkova, M, Pauk, N, Plackova, M, Sterclova, M, Bendstrup, E, Shaker, SB, Titlestad, I, Budweiser, S, Grohé, C, Koschel, D, Prasse, A, Weber, M, Wirtz, H, Antoniou, K, Daniil, Z, Gaga, M, Papakosta, D, Izumi, S, Okamoto, M, Guerreros Benavides, A, Iberico Barrera, C, Peña Villalobos, AM, Campo Ezquibela, A, Cifrian Martinez, JM, Fernandez Fabrellas, E, Leiro, V, Molina-Molina, M, Nieto Barbero, A, Sellares Torres, J, Valenzuela, C, Cheng, S-L, Kuo, P-H, Lee, K-Y, Sheu, C-C, Gunen, H, Mogulkoc Bishop, N, Nayci, S, Adamali, H, Bianchi, S, Chaudhuri, N, Gibbons, M, Hart, S, Molyneaux, P, Parfrey, H, Saini, G, Spencer, LG, Wiscombe, S, Antin-Ozerkis, D, Bascom, R, Belperio, J, Britt, E, Fitzgerald, J, Gomez Manjarres, D, Gotfried, M, Gupta, N, Hotchkin, D, Kaye, M, Kreider, M, Kureishy, S, Lacamera, P, Lancaster, L, Lasky, J, Lorch, D, Mannem, H, Morrow, L, Moua, T, Nambiar, A, Raghu, G, Raj, R, Ramaswamy, M, Reddy, R, Russell, T, Scholand, MB, Shea, B, Suliman, S, Swigris, J, Thavarajah, K, Tolle, L, Tomic, R, Warshoff, N, Wesselius, L, Yung, G, Bergna, M, De Salvo, M, Fernandez Acquier, M, Rodriguez, A, Saez Scherbovsky, P, Assayag, D, Dhar, A, Khalil, N, Morisset, J, Provencher, S, Ryerson, C, Shapera, S, Bourdin, A, Crestani, B, Lebargy, F, Reynaud-Gaubert, M, Bonella, FT, Claussen, M, Hammerl, P, Karagiannidis, C, Keller, C, Randerath, W, Stubbe, B, Csánky, E, Medgyasszay, B, Muller, V, Adir, Y, Bar-Shai, A, Berkman, N, Fink, G, Kramer, M, Shitrit, D, Bargagli, E, Gasparini, S, Harari, S, Ravaglia, C, Richeldi, L, Vancheri, C, Ebina, M, Fujita, M, Ichikado, K, Inoue, Y, Ishikawa, N, Kato, M, Kawamura, T, Kondoh, Y, Nishioka, Y, Ogura, T, Owan, I, Saito, T, Sakamoto, N, Sakamoto, K, Shirai, M, Suda, T, Tomii, K, Chung, MP, Jeong, SH, Park, CS, Park, JS, Song, JW, Uh, S-T, Chavarria Martinez, U, Montano Gonzalez, E, Ramirez, A, Selman Lama, ME, Bresser, P, Kramer, H, Mostard, R, Nossent, E, Veltkamp, M, Wijsenbeek, M, Beckert, L, Chang, CL, Veale, A, Wilsher, M, Bednarek, M, Gasior, G, Jasieniak-Pinis, G, Jassem, E, Mroz, R, Piotrowski, W, Abdullah, I, Ambaram, A, Irusen, E, Van der Linden, M, Van Zyl-Smit, R, Williams, P, Allen, J, Averill, F, Belloli, E, Brown, A, Case, A, Chaudhary, S, Criner, G, DeBoer, K, Dilling, D, Dorf, J, Enelow, R, Ettinger, N, Feldman, J, Gibson, K, Golden, J, Hamblin, M, Hunninghake, G, Karunakara, R, Kim, H, Luckhardt, T, Menon, P, Morrison, L, Oldham, J, Patel, N, Schmidt, S, Strek, M, Summer, R, Sussman, R, Tita, J, Veeraraghavan, S, Whelan, T, and Zibrak, J

Abstract

Importance There is a major need for effective, well-tolerated treatments for idiopathic pulmonary fibrosis (IPF). Objective To assess the efficacy and safety of the autotaxin inhibitor ziritaxestat in patients with IPF. Design, Setting, and Participants The 2 identically designed, phase 3, randomized clinical trials, ISABELA 1 and ISABELA 2, were conducted in Africa, Asia-Pacific region, Europe, Latin America, the Middle East, and North America (26 countries). A total of 1306 patients with IPF were randomized (525 patients at 106 sites in ISABELA 1 and 781 patients at 121 sites in ISABELA 2). Enrollment began in November 2018 in both trials and follow-up was completed early due to study termination on April 12, 2021, for ISABELA 1 and on March 30, 2021, for ISABELA 2. Interventions Patients were randomized 1:1:1 to receive 600 mg of oral ziritaxestat, 200 mg of ziritaxestat, or placebo once daily in addition to local standard of care (pirfenidone, nintedanib, or neither) for at least 52 weeks. Main Outcomes and Measures The primary outcome was the annual rate of decline for forced vital capacity (FVC) at week 52. The key secondary outcomes were disease progression, time to first respiratory-related hospitalization, and change from baseline in St George’s Respiratory Questionnaire total score (range, 0 to 100; higher scores indicate poorer health-related quality of life). Results At the time of study termination, 525 patients were randomized in ISABELA 1 and 781 patients in ISABELA 2 (mean age: 70.0 [SD, 7.2] years in ISABELA 1 and 69.8 [SD, 7.1] years in ISABELA 2; male: 82.4% and 81.2%, respectively). The trials were terminated early after an independent data and safety monitoring committee concluded that the benefit to risk profile of ziritaxestat no longer supported their continuation. Ziritaxestat did not improve the annual rate of FVC decline vs placebo in either study. In ISABELA 1, the least-squares mean annual rate of FVC decline was –124.6 mL (95% CI, −178.0 to −71.2 mL) with 600 mg of ziritaxestat vs –147.3 mL (95% CI, −199.8 to −94.7 mL) with placebo (between-group difference, 22.7 mL [95% CI, −52.3 to 97.6 mL]), and –173.9 mL (95% CI, −225.7 to −122.2 mL) with 200 mg of ziritaxestat (between-group difference vs placebo, −26.7 mL [95% CI, −100.5 to 47.1 mL]). In ISABELA 2, the least-squares mean annual rate of FVC decline was –173.8 mL (95% CI, −209.2 to −138.4 mL) with 600 mg of ziritaxestat vs –176.6 mL (95% CI, −211.4 to −141.8 mL) with placebo (between-group difference, 2.8 mL [95% CI, −46.9 to 52.4 mL]) and –174.9 mL (95% CI, −209.5 to −140.2 mL) with 200 mg of ziritaxestat (between-group difference vs placebo, 1.7 mL [95% CI, −47.4 to 50.8 mL]). There was no benefit with ziritaxestat vs placebo for the key secondary outcomes. In ISABELA 1, all-cause mortality was 8.0% with 600 mg of ziritaxestat, 4.6% with 200 mg of ziritaxestat, and 6.3% with placebo; in ISABELA 2, it was 9.3% with 600 mg of ziritaxestat, 8.5% with 200 mg of ziritaxestat, and 4.7% with placebo. Conclusions and Relevance Ziritaxestat did not improve clinical outcomes compared with placebo in patients with IPF receiving standard of care treatment with pirfenidone or nintedanib or in those not receiving standard of care treatment. Trial Registration ClinicalTrials.gov Identifiers: NCT03711162 and NCT03733444

Published
2023

6. Wolbachia-driven selective sweep in a range expanding insect species

Author

Deng, J, Assandri, G, Chauhan, P, Futahashi, R, Galimberti, A, Hansson, B, Lancaster, L, Takahashi, Y, Svensson, E, Duplouy, A, Deng J., Assandri G., Chauhan P., Futahashi R., Galimberti A., Hansson B., Lancaster L. T., Takahashi Y., Svensson E. I., Duplouy A., Deng, J, Assandri, G, Chauhan, P, Futahashi, R, Galimberti, A, Hansson, B, Lancaster, L, Takahashi, Y, Svensson, E, Duplouy, A, Deng J., Assandri G., Chauhan P., Futahashi R., Galimberti A., Hansson B., Lancaster L. T., Takahashi Y., Svensson E. I., and Duplouy A.

Abstract

Background: Evolutionary processes can cause strong spatial genetic signatures, such as local loss of genetic diversity, or conflicting histories from mitochondrial versus nuclear markers. Investigating these genetic patterns is important, as they may reveal obscured processes and players. The maternally inherited bacterium Wolbachia is among the most widespread symbionts in insects. Wolbachia typically spreads within host species by conferring direct fitness benefits, and/or by manipulating its host reproduction to favour infected over uninfected females. Under sufficient selective advantage, the mitochondrial haplotype associated with the favoured maternally-inherited symbiotic strains will spread (i.e. hitchhike), resulting in low mitochondrial genetic variation across the host species range. Method: The common bluetail damselfly (Ischnura elegans: van der Linden, 1820) has recently emerged as a model organism for genetics and genomic signatures of range expansion during climate change. Although there is accumulating data on the consequences of such expansion on the genetics of I. elegans, no study has screened for Wolbachia in the damselfly genus Ischnura. Here, we present the biogeographic variation in Wolbachia prevalence and penetrance across Europe and Japan (including samples from 17 populations), and from close relatives in the Mediterranean area (i.e. I. genei: Rambur, 1842; and I. saharensis: Aguesse, 1958). Results: Our data reveal (a) multiple Wolbachia-strains, (b) potential transfer of the symbiont through hybridization, (c) higher infection rates at higher latitudes, and (d) reduced mitochondrial diversity in the north-west populations, indicative of hitchhiking associated with the selective sweep of the most common strain. We found low mitochondrial haplotype diversity in the Wolbachia-infected north-western European populations (Sweden, Scotland, the Netherlands, Belgium, France and Italy) of I. elegans, and, conversely, higher mitochondrial diver

Published
2021

9. Integrating Gene Expression with Genome-Wide Association Summary Statistics to Identify Genes Associated with Idiopathic Pulmonary Fibrosis Survival

Author

Hu, X., primary, Kim, J., additional, Ma, S.F., additional, Huang, Y., additional, Oldham, J., additional, Allen, R., additional, Molyneaux, P.L., additional, Joseph, C., additional, Guillen Guio, B., additional, Hernández Beeftink, T., additional, Kropski, J., additional, Lee, C.T., additional, Adegunsoye, A.O., additional, Pugashetti, J.V., additional, Linderholm, A., additional, Strek, M.E., additional, Hubbard, R.B., additional, Hart, S.P., additional, Nicholson, A., additional, Lancaster, L., additional, Lorenzo-Salazar, J.M., additional, Vo, V., additional, Hirani, N., additional, Whyte, M.K., additional, Parfrey, H., additional, Rassl, D., additional, Wallace, W., additional, Valenzi, E., additional, Zhang, Y., additional, Stockwell, A., additional, Kaminski, N., additional, Wolters, P.J., additional, Molina-Molina, M., additional, Martinez, F.J., additional, Hall, I.P., additional, Tobin, M.D., additional, Maher, T.M., additional, Blackwell, T.S., additional, Yaspan, B.L., additional, Jenkins, R.G., additional, Wain, L.V., additional, Flores, C., additional, Noth, I., additional, and Manichaikul, A., additional

Published
2022
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19. A Randomized, Double-Blind, Placebo-Controlled Study to Assess the Safety and Efficacy of Pulsed, Inhaled Nitric Oxide (iNO) in Subjects at Risk of Pulmonary Hypertension (PH) Associated with Fibrotic Interstitial Lung Disease (fILD) on Long Term Oxygen Therapy

Author

Nathan, S.D., primary, Flaherty, K.R., additional, Glassberg, M., additional, Raghu, G., additional, Swigris, J.J., additional, Alvarez, R.A., additional, Ettinger, N.A., additional, Loyd, J.E., additional, Fernandes, P.P., additional, Gillies, H., additional, Shah, P., additional, and Lancaster, L., additional

Published
2020
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20. A Follow-On Prospective Clinical Validation of the Envisia Genomic Classifier

Author

Scholand, M.B., primary, Nathan, S.D., additional, Colby, T.V., additional, Groshong, S.D., additional, Lynch, D.A., additional, Lancaster, L., additional, Oldham, J., additional, Chung, J.H., additional, Patel, N., additional, Choi, Y., additional, Pankrantz, D., additional, Bhorade, S., additional, Lofaro, L., additional, Huang, J., additional, Kennedy, G., additional, and Raghu, G., additional

Published
2020
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21. An Acute Dose Escalation Study to Assess the Safety and Hemodynamic Efficacy of Pulsed Inhaled Nitric Oxide (iNO) in Subjects with Pulmonary Hypertension Associated with Pulmonary Fibrosis (PF) or Sarcoidosis

Author

Alvarez, R.A., primary, Dudenhofer, R., additional, Ahmad, K., additional, Glassberg Csete, M.K., additional, Lancaster, L., additional, Raghu, G., additional, Stewart, J.I., additional, Gillies, H., additional, Shah, P., additional, Baughman, R.P., additional, and Nathan, S.P., additional

Published
2020
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24. Schrödinger-Poisson-Vlasov-Poisson correspondence

Author

Mocz, P, Lancaster, L, Fialkov, A, Becerra, F, Chavanis, PH, and Apollo - University of Cambridge Repository

Subjects
astro-ph.CO
Abstract

The Schr\"odinger-Poisson equations describe the behavior of a superfluid Bose-Einstein condensate under self-gravity with a 3D wave function. As $\hbar/m\to 0$, $m$ being the boson mass, the equations have been postulated to approximate the collisionless Vlasov-Poisson equations also known as the collisionless Boltzmann-Poisson equations. The latter describe collisionless matter with a 6D classical distribution function. We investigate the nature of this correspondence with a suite of numerical test problems in 1D, 2D, and 3D along with analytic treatments when possible. We demonstrate that, while the density field of the superfluid always shows order unity oscillations as $\hbar/m\to 0$ due to interference and the uncertainty principle, the potential field converges to the classical answer as $(\hbar/m)^{2}$. Thus, any dynamics coupled to the superfluid potential is expected to recover the classical collisionless limit as $\hbar/m\to 0$. The quantum superfluid is able to capture rich phenomena such as multiple phase-sheets, shell-crossings, and warm distributions. Additionally, the quantum pressure tensor acts as a regularizer of caustics and singularities in classical solutions. This suggests the exciting prospect of using the Schr\"odinger-Poisson equations as a low-memory method for approximating the high-dimensional evolution of the Vlasov-Poisson equations. As a particular example we consider dark matter composed of ultra-light axions, which in the classical limit ($\hbar/m\to 0$) is expected to manifest itself as collisionless cold dark matter.

Published
2019
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30. Safety and survival data in patients with idiopathic pulmonary fibrosis treated with nintedanib: Pooled data from six clinical trials

Author

Lancaster, L., Crestani, B., Hernandez, P., Inoue, Y., Wachtlin, D., Loaiza, L., Quaresma, M., Stowasser, S., Richeldi, Luca, Richeldi L. (ORCID:0000-0001-8594-1448), Lancaster, L., Crestani, B., Hernandez, P., Inoue, Y., Wachtlin, D., Loaiza, L., Quaresma, M., Stowasser, S., Richeldi, Luca, and Richeldi L. (ORCID:0000-0001-8594-1448)

Abstract

Introduction Nintedanib slows disease progression in patients with idiopathic pulmonary fibrosis (IPF) by reducing the rate of decline in forced vital capacity, with an adverse event profile that is manageable for most patients. We used data from six clinical trials to characterise the safety and tolerability profile of nintedanib and to investigate its effects on survival. Methods Data from patients treated with ≥1 dose of nintedanib 150 mg two times per day or placebo in the 52-week TOMORROW trial and/or its open-label extension; the two 52-week INPULSIS trials and/or their open-label extension, INPULSIS-ON; and a Phase IIIb trial with a placebo-controlled period of ≥6 months followed by open-label nintedanib were pooled. All adverse events, irrespective of causality, were included in descriptive analyses. Parametric survival distributions were fit to pooled Kaplan-Meier survival data from the trials and extrapolated to estimate long-term survival. Results There were 1126 patients in the pooled nintedanib group and 565 patients in the pooled placebo group. The mean duration of nintedanib treatment was 28 months. No new safety signals were observed. Incidence rates of bleeding, liver enzyme elevations and cardiovascular events were consistent with those observed in the INPULSIS trials. Diarrhoea was reported at a lower event rate in the pooled nintedanib group than in nintedanib-treated patients in the INPULSIS trials (76.5 vs 112.6 events per 100 patient exposure-years) and infrequently led to permanent treatment discontinuation (3.6 events per 100 patient exposure-years). Based on the Weibull distribution, mean (95% CI) survival was estimated as 11.6 (9.6, 14.1) years in nintedanib-treated patients and 3.7 (2.5, 5.4) years in placebo-treated patients. Conclusions Based on pooled data from six clinical trials, the adverse event profile of nintedanib was manageable for most patients. Exploratory analyses based on extrapolation of survival data suggest that nintedan

Published
2019

31. Usefulness and limitations of thermal performance curves in predicting ectotherm development under climatic variability

Author

Lancaster, Lesley, Lancaster, L ( Lesley ), Khelifa, Rassim; https://orcid.org/0000-0001-6632-8787, Blanckenhorn, Wolf U; https://orcid.org/0000-0002-0713-3944, Roy, Jeannine, Rohner, Patrick T; https://orcid.org/0000-0002-9840-1050, Mahdjoub, Hayat; https://orcid.org/0000-0002-8972-9628, Lancaster, Lesley, Lancaster, L ( Lesley ), Khelifa, Rassim; https://orcid.org/0000-0001-6632-8787, Blanckenhorn, Wolf U; https://orcid.org/0000-0002-0713-3944, Roy, Jeannine, Rohner, Patrick T; https://orcid.org/0000-0002-9840-1050, and Mahdjoub, Hayat; https://orcid.org/0000-0002-8972-9628

Abstract

Thermal performance curves (TPCs) have been estimated in multiple ectotherm species to understand their thermal plasticity and adaptation and to predict the effect of global warming. However, TPCs are typically assessed under constant temperature regimes, so their reliability for predicting thermal responses in the wild where temperature fluctuates diurnally and seasonally remains poorly documented. Here, we use distant latitudinal populations of five species of sepsid flies (Diptera: Sepsidae) from the temperate region (Europe, North Africa, North America) to compare estimates derived from constant TPCs with observed development rate under fluctuating temperatures in laboratory and field conditions. TPCs changed across gradients in that flies originating from higher latitudes showed accelerated development at higher temperatures, an adaptive response. TPCs were then used to predict development rates observed under fluctuating temperatures; these predictions were relatively accurate in the laboratory but not the field. Interestingly, the precision of TPC predictions depended not only on the resolution of temperature data, with daily and overall temperature summing performing better than hourly temperature summing, but also on the frequency of temperatures falling below the estimated critical minimum temperature. Hourly temperature resolution most strongly underestimated actual development rates, because flies apparently either did not stop growing when temperatures dropped below this threshold, or they sped up their growth when the temperature rose again, thus most severely reflecting this error. We conclude that when flies do not encounter cold temperatures, TPC predictions based on constant temperatures can accurately reflect performance under fluctuating temperatures if adequately adjusted for nonlinearities, but when encountering cold temperatures, this method is more error-prone. Our study emphasizes the importance of the resolution of temperature data and cold

Published
2019

33. Dispersal evolution in currents: spatial sorting promotes philopatry in upstream patches.

Author

Allgayer, R. L., Scarpa, A., Fernandes, P. G., Wright, P. J., Lancaster, L., Bocedi, G., and Travis, J. M. J.

Subjects
PHILOPATRY, PLANT-fungus relationships, NATURAL selection, DISPERSAL (Ecology), PLANT dispersal
Abstract

Substantial literature is devoted to understanding dispersal evolution, but we lack theory on how dispersal evolves when populations inhabit currents. Such theory is required for understanding connectivity in freshwater and marine environments; moreover, many animals, fungi and plants rely on wind‐based dispersal, but the effects of currents on dispersal evolution in these organisms is unknown. We develop an individual‐based model for evolution of dispersal probability along a linear environment with a unidirectional current. Even a slight current substantially reduces overall emigration probability compared to no current. Under stronger currents, emigration can be drastically reduced, especially in the upstream patches. When introducing rare long‐distance dispersal that is not subject to the current, higher emigration probabilities evolve and the spatial variability in emigration propensity along the stream is reduced. Our results provide an alternative solution to the long debated 'drift paradox' concerning the loss of individuals from upstream populations due to advective forces. A combination of natural selection and spatial sorting generates and maintains downstream gradients in dispersal propensity, where individuals from upstream populations tend to be substantially more philopatric. This is likely to have major implications for ecological and genetic connectivity that will impact effective management strategies for populations inhabiting currents. [ABSTRACT FROM AUTHOR]

Published
2021
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34. BioTIME : a database of biodiversity time series for the Anthropocene [data paper]

Author

Dornelas, M., Antao, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., Akhmetzhanova, A. A., Appeltans, W., Arcos, J. M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A. H., Barbosa, M., Barreto, T. E., Baessler, C., Bellgrove, A., Belmaker, J., Benedetti-Cecchi, L., Bett, B. J., Bjorkman, A. D., Blazewicz, M., Blowes, S. A., Bloch, C. P., Bonebrake, T. C., Boyd, S., Bradford, M., Brooks, A. J., Brown, J. H., Bruelheide, H., Budy, P., Carvalho, F., Castaneda-Moya, E., Chen, C. A., Chamblee, J. F., Chase, T. J., Collier, L., Collinge, S. K., Condit, R., Cooper, E. J., Cornelissen, J. H. C., Cotano, U., Crow, S. K., Damasceno, G., Davies, C. H., Davis, R. A., Day, F. P., Degraer, S., Doherty, T. S., Dunn, T. E., Durigan, G., Duffy, J. E., Edelist, D., Edgar, G. J., Elahi, R., Elmendorf, S. C., Enemar, A., Ernest, S. K. M., Escribano, R., Estiarte, M., Evans, B. S., Fan, T. Y., Farah, F. T., Fernandes, L. L., Farneda, F. Z., Fidelis, A., Fitt, R., Fosaa, A. M., Franco, G. A. C., Frank, G. E., Fraser, W. R., Garcia, H., Gatti, R. C., Givan, O., Gorgone-Barbosa, E., Gould, W. A., Gries, C., Grossman, G. D., Gutierrez, J. R., Hale, S., Harmon, M. E., Harte, J., Haskins, G., Henshaw, D. L., Hermanutz, L., Hidalgo, P., Higuchi, P., Hoey, A., Hoey, G., Hofgaard, A., Holeck, K., Hollister, R. D., Holmes, R., Hoogenboom, M., Hsieh, C. H., Hubbell, S. P., Huettmann, F., Huffard, C. L., Hurlbert, A. H., Ivanauskas, N. M., Janik, D., Jandt, U., Jazdzewska, A., Johannessen, T., Johnstone, J., Jones, J., Jones, F. A. M., Kang, J., Kartawijaya, T., Keeley, C., Kelt, D. A., Kinnear, R., Klanderud, K., Knutsen, H., Koenig, C. C., Kortz, A. R., Kral, K., Kuhnz, L. A., Kuo, C. Y., Kushner, D. J., Laguionie-Marchais, C., Lancaster, L. T., Lee, C., Lefcheck, J. S., Levesque, E., Lightfoot, D., Lloret, F., Lloyd, J. D., Lopez-Baucells, A., Louzao, M., Madin, J. S., Magnusson, B., Malamud, S., Matthews, I., McFarland, K. P., McGill, B., McKnight, D., McLarney, W. O., Meador, J., Meserve, P. L., Metcalfe, D. J., Meyer, C. F. J., Michelsen, A., Milchakova, N., Moens, T., Moland, E., Moore, J., Moreira, C. M., Mueller, J., Murphy, G., Myers-Smith, I. H., Myster, R. W., Naumov, A., Neat, F., Nelson, J. A., Nelson, M., Newton, S. F., Norden, N., Oliver, J. C., Olsen, E. M., Onipchenko, V. G., Pabis, K., Pabst, R. J., Paquette, A., Pardede, S., Paterson, D. M., and Pélissier, Raphaël

Subjects
spatial, temporal, turnover, species richness, global, biodiversity
Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km(2) (158 cm(2)) to 100 km(2) (1,000,000,000,000 cm(2)). Time period and grainBio: TIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.

Published
2018

36. Generalized Giant Cell Arteritis Discovered on Positron Emission Tomography

Author

Hatti K, Habbu A, Grosh W, Lewis J, Hendricks N, and Lancaster L

Subjects
Fluorodeoxyglucose, Abdominal pain, medicine.medical_specialty, medicine.diagnostic_test, business.industry, Abdominal aorta, medicine.disease, Giant cell arteritis, medicine.anatomical_structure, Positron emission tomography, Giant cell, medicine.artery, Large vessel vasculitis, medicine, Abdomen, Radiology, medicine.symptom, business, medicine.drug
Abstract

An eighty two year old man with a remote history of metastatic melanoma status post chemotherapy presented with fatigue, generalized weakness, low grade fevers, abdominal pain and weight loss. Positron emission tomography (PET) scan was obtained, which revealed diffuse and symmetric increased F-18 Fluorodeoxyglucose (FDG) uptake throughout the large arterial vasculature in the neck, chest, abdomen, pelvis and lower extremities. CT angiogram showed subtle wall thickening involving the bilateral vertebral, bilateral axillary, left subclavian, abdominal aorta, bilateral common iliac, internal iliac, common femoral, superficial femoral, popliteal and anterior tibial arteries, consistent with large vessel vasculitis. Subsequent left temporal artery biopsy revealed multiple giant cells with associated lymphoid cells infiltrating all levels of the artery, but most focused in the media and adventitia, consistent with giant cell arteritis (GCA). The patient was started on prednisone, resulting in prompt improvement in his constitutional symptoms and normalization of his sedimentation rate.

Published
2018
Full Text
View/download PDF

37. BioTIME:a database of biodiversity time series for the Anthropocene

Author

Dornelas, M. (Maria), Antao, L. H. (Laura H.), Moyes, F. (Faye), Bates, A. E. (Amanda E.), Magurran, A. E. (Anne E.), Adam, D. (Dusan), Akhmetzhanova, A. A. (Asem A.), Appeltans, W. (Ward), Arcos, J. M. (Jose Manuel), Arnold, H. (Haley), Ayyappan, N. (Narayanan), Badihi, G. (Gal), Baird, A. H. (Andrew H.), Barbosa, M. (Miguel), Barreto, T. E. (Tiago Egydio), Baessler, C. (Claus), Bellgrove, A. (Alecia), Belmaker, J. (Jonathan), Benedetti-Cecchi, L. (Lisandro), Bett, B. J. (Brian J.), Bjorkman, A. D. (Anne D.), Blazewicz, M. (Magdalena), Blowes, S. A. (Shane A.), Bloch, C. P. (Christopher P.), Bonebrake, T. C. (Timothy C.), Boyd, S. (Susan), Bradford, M. (Matt), Brooks, A. J. (Andrew J.), Brown, J. H. (James H.), Bruelheide, H. (Helge), Budy, P. (Phaedra), Carvalho, F. (Fernando), Castaneda-Moya, E. (Edward), Chen, C. A. (Chaolun Allen), Chamblee, J. F. (John F.), Chase, T. J. (Tory J.), Siegwart Collier, L. (Laura), Collinge, S. K. (Sharon K.), Condit, R. (Richard), Cooper, E. J. (Elisabeth J.), Cornelissen, J. H. (J. Hans C.), Cotano, U. (Unai), Crow, S. K. (Shannan Kyle), Damasceno, G. (Gabriella), Davies, C. H. (Claire H.), Davis, R. A. (Robert A.), Day, F. P. (Frank P.), Degraer, S. (Steven), Doherty, T. S. (Tim S.), Dunn, T. E. (Timothy E.), Durigan, G. (Giselda), Duffy, J. E. (J. Emmett), Edelist, D. (Dor), Edgar, G. J. (Graham J.), Elahi, R. (Robin), Elmendorf, S. C. (Sarah C.), Enemar, A. (Anders), Ernest, S. K. (S. K. Morgan), Escribano, R. (Ruben), Estiarte, M. (Marc), Evans, B. S. (Brian S.), Fan, T.-Y. (Tung-Yung), Farah, F. T. (Fabiano Turini), Fernandes, L. L. (Luiz Loureiro), Farneda, F. Z. (Fabio Z.), Fidelis, A. (Alessandra), Fitt, R. (Robert), Fosaa, A. M. (Anna Maria), Daher Correa Franco, G. A. (Geraldo Antonio), Frank, G. E. (Grace E.), Fraser, W. R. (William R.), Garcia, H. (Hernando), Gatti, R. C. (Roberto Cazzolla), Givan, O. (Or), Gorgone-Barbosa, E. (Elizabeth), Gould, W. A. (William A.), Gries, C. (Corinna), Grossman, G. D. (Gary D.), Gutierrez, J. R. (Julio R.), Hale, S. (Stephen), Harmon, M. E. (Mark E.), Harte, J. (John), Haskins, G. (Gary), Henshaw, D. L. (Donald L.), Hermanutz, L. (Luise), Hidalgo, P. (Pamela), Higuchi, P. (Pedro), Hoey, A. (Andrew), Van Hoey, G. (Gert), Hofgaard, A. (Annika), Holeck, K. (Kristen), Hollister, R. D. (Robert D.), Holmes, R. (Richard), Hoogenboom, M. (Mia), Hsieh, C.-h. (Chih-hao), Hubbell, S. P. (Stephen P.), Huettmann, F. (Falk), Huffard, C. L. (Christine L.), Hurlbert, A. H. (Allen H.), Ivanauskas, N. M. (Natalia Macedo), Janik, D. (David), Jandt, U. (Ute), Jazdzewska, A. (Anna), Johannessen, T. (Tore), Johnstone, J. (Jill), Jones, J. (Julia), Jones, F. A. (Faith A. M.), Kang, J. (Jungwon), Kartawijaya, T. (Tasrif), Keeley, E. C. (Erin C.), Kelt, D. A. (Douglas A.), Kinnear, R. (Rebecca), Klanderud, K. (Kari), Knutsen, H. (Halvor), Koenig, C. C. (Christopher C.), Kortz, A. R. (Alessandra R.), Kral, K. (Kamil), Kuhnz, L. A. (Linda A.), Kuo, C.-Y. (Chao-Yang), Kushner, D. J. (David J.), Laguionie-Marchais, C. (Claire), Lancaster, L. T. (Lesley T.), Min Lee, C. (Cheol), Lefcheck, J. S. (Jonathan S.), Levesque, E. (Esther), Lightfoot, D. (David), Lloret, F. (Francisco), Lloyd, J. D. (John D.), Lopez-Baucells, A. (Adria), Louzao, M. (Maite), Madin, J. S. (Joshua S.), Magnusson, B. (Borgpor), Malamud, S. (Shahar), Matthews, I. (Iain), McFarland, K. P. (Kent P.), McGill, B. (Brian), McKnight, D. (Diane), McLarney, W. O. (William O.), Meador, J. (Jason), Meserve, P. L. (Peter L.), Metcalfe, D. J. (Daniel J.), Meyer, C. F. (Christoph F. J.), Michelsen, A. (Anders), Milchakova, N. (Nataliya), Moens, T. (Tom), Moland, E. (Even), Moore, J. (Jon), Moreira, C. M. (Carolina Mathias), Mueller, J. (Joerg), Murphy, G. (Grace), Myers-Smith, I. H. (Isla H.), Myster, R. W. (Randall W.), Naumov, A. (Andrew), Neat, F. (Francis), Nelson, J. A. (James A.), Paul Nelson, M. (Michael), Newton, S. F. (Stephen F.), Norden, N. (Natalia), Oliver, J. C. (Jeffrey C.), Olsen, E. M. (Esben M.), Onipchenko, V. G. (Vladimir G.), Pabis, K. (Krzysztof), Pabst, R. J. (Robert J.), Paquette, A. (Alain), Pardede, S. (Sinta), Paterson, D. M. (David M.), Pelissier, R. (Raphael), Penuelas, J. (Josep), Perez-Matus, A. (Alejandro), Pizarro, O. (Oscar), Pomati, F. (Francesco), Post, E. (Eric), Prins, H. H. (Herbert H. T.), Priscu, J. C. (John C.), Provoost, P. (Pieter), Prudic, K. L. (Kathleen L.), Erkki, P. (Pulliainen), Ramesh, B. R. (B. R.), Mendivil Ramos, O. (Olivia), Rassweiler, A. (Andrew), Rebelo, J. E. (Jose Eduardo), Reed, D. C. (Daniel C.), Reich, P. B. (Peter B.), Remillard, S. M. (Suzanne M.), Richardson, A. J. (Anthony J.), Richardson, J. P. (J. Paul), van Rijn, I. (Itai), Rocha, R. (Ricardo), Rivera-Monroy, V. H. (Victor H.), Rixen, C. (Christian), Robinson, K. P. (Kevin P.), Rodrigues, R. R. (Ricardo Ribeiro), Rossa-Feres, D. d. (Denise de Cerqueira), Rudstam, L. (Lars), Ruhl, H. (Henry), Ruz, C. S. (Catalina S.), Sampaio, E. M. (Erica M.), Rybicki, N. (Nancy), Rypel, A. (Andrew), Sal, S. (Sofia), Salgado, B. (Beatriz), Santos, F. A. (Flavio A. M.), Savassi-Coutinho, A. P. (Ana Paula), Scanga, S. (Sara), Schmidt, J. (Jochen), Schooley, R. (Robert), Setiawan, F. (Fakhrizal), Shao, K.-T. (Kwang-Tsao), Shaver, G. R. (Gaius R.), Sherman, S. (Sally), Sherry, T. W. (Thomas W.), Sicinski, J. (Jacek), Sievers, C. (Caya), da Silva, A. C. (Ana Carolina), da Silva, F. R. (Fernando Rodrigues), Silveira, F. L. (Fabio L.), Slingsby, J. (Jasper), Smart, T. (Tracey), Snell, S. J. (Sara J.), Soudzilovskaia, N. A. (Nadejda A.), Souza, G. B. (Gabriel B. G.), Souza, F. M. (Flaviana Maluf), Souza, V. C. (Vinicius Castro), Stallings, C. D. (Christopher D.), Stanforth, R. (Rowan), Stanley, E. H. (Emily H.), Sterza, J. M. (Jose Mauro), Stevens, M. (Maarten), Stuart-Smith, R. (Rick), Rondon Suarez, Y. (Yzel), Supp, S. (Sarah), Yoshio Tamashiro, J. (Jorge), Tarigan, S. (Sukmaraharja), Thiede, G. P. (Gary P.), Thorn, S. (Simon), Tolvanen, A. (Anne), Zugliani Toniato, M. T. (Maria Teresa), Totland, O. (Orjan), Twilley, R. R. (Robert R.), Vaitkus, G. (Gediminas), Valdivia, N. (Nelson), Vallejo, M. I. (Martha Isabel), Valone, T. J. (Thomas J.), Van Colen, C. (Carl), Vanaverbeke, J. (Jan), Venturoli, F. (Fabio), Verheye, H. M. (Hans M.), Vianna, M. (Marcelo), Vieira, R. P. (Rui P.), Vrska, T. (Tomas), Vu, C. Q. (Con Quang), Vu, L. V. (Lien Van), Waide, R. B. (Robert B.), Waldock, C. (Conor), Watts, D. (Dave), Webb, S. (Sara), Wesolowski, T. (Tomasz), White, E. P. (Ethan P.), Widdicombe, C. E. (Claire E.), Wilgers, D. (Dustin), Williams, R. (Richard), Williams, S. B. (Stefan B.), Williamson, M. (Mark), Willig, M. R. (Michael R.), Willis, T. J. (Trevor J.), Wipf, S. (Sonja), Woods, K. D. (Kerry D.), Woehler, E. J. (Eric J.), Zawada, K. (Kyle), Zettler, M. L. (Michael L.), Dornelas, M. (Maria), Antao, L. H. (Laura H.), Moyes, F. (Faye), Bates, A. E. (Amanda E.), Magurran, A. E. (Anne E.), Adam, D. (Dusan), Akhmetzhanova, A. A. (Asem A.), Appeltans, W. (Ward), Arcos, J. M. (Jose Manuel), Arnold, H. (Haley), Ayyappan, N. (Narayanan), Badihi, G. (Gal), Baird, A. H. (Andrew H.), Barbosa, M. (Miguel), Barreto, T. E. (Tiago Egydio), Baessler, C. (Claus), Bellgrove, A. (Alecia), Belmaker, J. (Jonathan), Benedetti-Cecchi, L. (Lisandro), Bett, B. J. (Brian J.), Bjorkman, A. D. (Anne D.), Blazewicz, M. (Magdalena), Blowes, S. A. (Shane A.), Bloch, C. P. (Christopher P.), Bonebrake, T. C. (Timothy C.), Boyd, S. (Susan), Bradford, M. (Matt), Brooks, A. J. (Andrew J.), Brown, J. H. (James H.), Bruelheide, H. (Helge), Budy, P. (Phaedra), Carvalho, F. (Fernando), Castaneda-Moya, E. (Edward), Chen, C. A. (Chaolun Allen), Chamblee, J. F. (John F.), Chase, T. J. (Tory J.), Siegwart Collier, L. (Laura), Collinge, S. K. (Sharon K.), Condit, R. (Richard), Cooper, E. J. (Elisabeth J.), Cornelissen, J. H. (J. Hans C.), Cotano, U. (Unai), Crow, S. K. (Shannan Kyle), Damasceno, G. (Gabriella), Davies, C. H. (Claire H.), Davis, R. A. (Robert A.), Day, F. P. (Frank P.), Degraer, S. (Steven), Doherty, T. S. (Tim S.), Dunn, T. E. (Timothy E.), Durigan, G. (Giselda), Duffy, J. E. (J. Emmett), Edelist, D. (Dor), Edgar, G. J. (Graham J.), Elahi, R. (Robin), Elmendorf, S. C. (Sarah C.), Enemar, A. (Anders), Ernest, S. K. (S. K. Morgan), Escribano, R. (Ruben), Estiarte, M. (Marc), Evans, B. S. (Brian S.), Fan, T.-Y. (Tung-Yung), Farah, F. T. (Fabiano Turini), Fernandes, L. L. (Luiz Loureiro), Farneda, F. Z. (Fabio Z.), Fidelis, A. (Alessandra), Fitt, R. (Robert), Fosaa, A. M. (Anna Maria), Daher Correa Franco, G. A. (Geraldo Antonio), Frank, G. E. (Grace E.), Fraser, W. R. (William R.), Garcia, H. (Hernando), Gatti, R. C. (Roberto Cazzolla), Givan, O. (Or), Gorgone-Barbosa, E. (Elizabeth), Gould, W. A. (William A.), Gries, C. (Corinna), Grossman, G. D. (Gary D.), Gutierrez, J. R. (Julio R.), Hale, S. (Stephen), Harmon, M. E. (Mark E.), Harte, J. (John), Haskins, G. (Gary), Henshaw, D. L. (Donald L.), Hermanutz, L. (Luise), Hidalgo, P. (Pamela), Higuchi, P. (Pedro), Hoey, A. (Andrew), Van Hoey, G. (Gert), Hofgaard, A. (Annika), Holeck, K. (Kristen), Hollister, R. D. (Robert D.), Holmes, R. (Richard), Hoogenboom, M. (Mia), Hsieh, C.-h. (Chih-hao), Hubbell, S. P. (Stephen P.), Huettmann, F. (Falk), Huffard, C. L. (Christine L.), Hurlbert, A. H. (Allen H.), Ivanauskas, N. M. (Natalia Macedo), Janik, D. (David), Jandt, U. (Ute), Jazdzewska, A. (Anna), Johannessen, T. (Tore), Johnstone, J. (Jill), Jones, J. (Julia), Jones, F. A. (Faith A. M.), Kang, J. (Jungwon), Kartawijaya, T. (Tasrif), Keeley, E. C. (Erin C.), Kelt, D. A. (Douglas A.), Kinnear, R. (Rebecca), Klanderud, K. (Kari), Knutsen, H. (Halvor), Koenig, C. C. (Christopher C.), Kortz, A. R. (Alessandra R.), Kral, K. (Kamil), Kuhnz, L. A. (Linda A.), Kuo, C.-Y. (Chao-Yang), Kushner, D. J. (David J.), Laguionie-Marchais, C. (Claire), Lancaster, L. T. (Lesley T.), Min Lee, C. (Cheol), Lefcheck, J. S. (Jonathan S.), Levesque, E. (Esther), Lightfoot, D. (David), Lloret, F. (Francisco), Lloyd, J. D. (John D.), Lopez-Baucells, A. (Adria), Louzao, M. (Maite), Madin, J. S. (Joshua S.), Magnusson, B. (Borgpor), Malamud, S. (Shahar), Matthews, I. (Iain), McFarland, K. P. (Kent P.), McGill, B. (Brian), McKnight, D. (Diane), McLarney, W. O. (William O.), Meador, J. (Jason), Meserve, P. L. (Peter L.), Metcalfe, D. J. (Daniel J.), Meyer, C. F. (Christoph F. J.), Michelsen, A. (Anders), Milchakova, N. (Nataliya), Moens, T. (Tom), Moland, E. (Even), Moore, J. (Jon), Moreira, C. M. (Carolina Mathias), Mueller, J. (Joerg), Murphy, G. (Grace), Myers-Smith, I. H. (Isla H.), Myster, R. W. (Randall W.), Naumov, A. (Andrew), Neat, F. (Francis), Nelson, J. A. (James A.), Paul Nelson, M. (Michael), Newton, S. F. (Stephen F.), Norden, N. (Natalia), Oliver, J. C. (Jeffrey C.), Olsen, E. M. (Esben M.), Onipchenko, V. G. (Vladimir G.), Pabis, K. (Krzysztof), Pabst, R. J. (Robert J.), Paquette, A. (Alain), Pardede, S. (Sinta), Paterson, D. M. (David M.), Pelissier, R. (Raphael), Penuelas, J. (Josep), Perez-Matus, A. (Alejandro), Pizarro, O. (Oscar), Pomati, F. (Francesco), Post, E. (Eric), Prins, H. H. (Herbert H. T.), Priscu, J. C. (John C.), Provoost, P. (Pieter), Prudic, K. L. (Kathleen L.), Erkki, P. (Pulliainen), Ramesh, B. R. (B. R.), Mendivil Ramos, O. (Olivia), Rassweiler, A. (Andrew), Rebelo, J. E. (Jose Eduardo), Reed, D. C. (Daniel C.), Reich, P. B. (Peter B.), Remillard, S. M. (Suzanne M.), Richardson, A. J. (Anthony J.), Richardson, J. P. (J. Paul), van Rijn, I. (Itai), Rocha, R. (Ricardo), Rivera-Monroy, V. H. (Victor H.), Rixen, C. (Christian), Robinson, K. P. (Kevin P.), Rodrigues, R. R. (Ricardo Ribeiro), Rossa-Feres, D. d. (Denise de Cerqueira), Rudstam, L. (Lars), Ruhl, H. (Henry), Ruz, C. S. (Catalina S.), Sampaio, E. M. (Erica M.), Rybicki, N. (Nancy), Rypel, A. (Andrew), Sal, S. (Sofia), Salgado, B. (Beatriz), Santos, F. A. (Flavio A. M.), Savassi-Coutinho, A. P. (Ana Paula), Scanga, S. (Sara), Schmidt, J. (Jochen), Schooley, R. (Robert), Setiawan, F. (Fakhrizal), Shao, K.-T. (Kwang-Tsao), Shaver, G. R. (Gaius R.), Sherman, S. (Sally), Sherry, T. W. (Thomas W.), Sicinski, J. (Jacek), Sievers, C. (Caya), da Silva, A. C. (Ana Carolina), da Silva, F. R. (Fernando Rodrigues), Silveira, F. L. (Fabio L.), Slingsby, J. (Jasper), Smart, T. (Tracey), Snell, S. J. (Sara J.), Soudzilovskaia, N. A. (Nadejda A.), Souza, G. B. (Gabriel B. G.), Souza, F. M. (Flaviana Maluf), Souza, V. C. (Vinicius Castro), Stallings, C. D. (Christopher D.), Stanforth, R. (Rowan), Stanley, E. H. (Emily H.), Sterza, J. M. (Jose Mauro), Stevens, M. (Maarten), Stuart-Smith, R. (Rick), Rondon Suarez, Y. (Yzel), Supp, S. (Sarah), Yoshio Tamashiro, J. (Jorge), Tarigan, S. (Sukmaraharja), Thiede, G. P. (Gary P.), Thorn, S. (Simon), Tolvanen, A. (Anne), Zugliani Toniato, M. T. (Maria Teresa), Totland, O. (Orjan), Twilley, R. R. (Robert R.), Vaitkus, G. (Gediminas), Valdivia, N. (Nelson), Vallejo, M. I. (Martha Isabel), Valone, T. J. (Thomas J.), Van Colen, C. (Carl), Vanaverbeke, J. (Jan), Venturoli, F. (Fabio), Verheye, H. M. (Hans M.), Vianna, M. (Marcelo), Vieira, R. P. (Rui P.), Vrska, T. (Tomas), Vu, C. Q. (Con Quang), Vu, L. V. (Lien Van), Waide, R. B. (Robert B.), Waldock, C. (Conor), Watts, D. (Dave), Webb, S. (Sara), Wesolowski, T. (Tomasz), White, E. P. (Ethan P.), Widdicombe, C. E. (Claire E.), Wilgers, D. (Dustin), Williams, R. (Richard), Williams, S. B. (Stefan B.), Williamson, M. (Mark), Willig, M. R. (Michael R.), Willis, T. J. (Trevor J.), Wipf, S. (Sonja), Woods, K. D. (Kerry D.), Woehler, E. J. (Eric J.), Zawada, K. (Kyle), and Zettler, M. L. (Michael L.)

Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km² (158 cm²) to 100 km² (1,000,000,000,000 cm²). Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates. Software format: .csv and .SQL.

Published
2018

38. BioTIME: A database of biodiversity time series for the Anthropocene

Author

Dornelas, M., Antão, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., Akhmetzhanova, A. A., Appeltans, W., Arcos, J. M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A. H., Barbosa, M., Barreto, T. E., Bässler, C., Bellgrove, A., Belmaker, J., Benedetti-Cecchi, L., Bett, B. J., Bjorkman, A. D., Błażewicz, M., Blowes, S. A., Bloch, C. P., Bonebrake, T. C., Boyd, S., Bradford, M., Brooks, A. J., Brown, J. H., Bruelheide, H., Budy, P., Carvalho, F., Castañeda-Moya, E., Chen, C. A., Chamblee, J. F., Chase, T. J., Siegwart Collier, L., Collinge, S. K., Condit, R., Cooper, E. J., Cornelissen, J. H. C., Cotano, U., Kyle Crow, S., Damasceno, G., Davies, C. H., Davis, R. A., Day, F. P., Degraer, S., Doherty, T. S., Dunn, T. E., Durigan, G., Duffy, J. E., Edelist, D., Edgar, G. J., Elahi, R., Elmendorf, S. C., Enemar, A., Ernest, S. K. M., Escribano, R., Estiarte, M., Evans, B. S., Fan, T. Y., Turini Farah, F., Loureiro Fernandes, L., Farneda, F. Z., Fidelis, A., Fitt, R., Fosaa, A. M., Daher Correa Franco, G. A., Frank, G. E., Fraser, W. R., García, H., Cazzolla Gatti, R., Givan, O., Gorgone-Barbosa, E., Gould, W. A., Gries, C., Grossman, G. D., Gutierréz, J. R., Hale, S., Harmon, M. E., Harte, J., Haskins, G., Henshaw, D. L., Hermanutz, L., Hidalgo, P., Higuchi, P., Hoey, A., Van Hoey, G., Hofgaard, A., Holeck, K., Hollister, R. D., Holmes, R., Hoogenboom, M., Hsieh, C. H., Hubbell, S. P., Huettmann, F., Huffard, C. L., Hurlbert, A. H., Macedo Ivanauskas, N., Janík, D., Jandt, U., Jażdżewska, A., Johannessen, T., Johnstone, J., Jones, J., Jones, F. A. M., Kang, J., Kartawijaya, T., Keeley, E. C., Kelt, D. A., Kinnear, R., Klanderud, K., Knutsen, H., Koenig, C. C., Kortz, A. R., Král, K., Kuhnz, L. A., Kuo, C. Y., Kushner, D. J., Laguionie-Marchais, C., Lancaster, L. T., Min Lee, C., Lefcheck, J. S., Lévesque, E., Lightfoot, D., Lloret, F., Lloyd, J. D., López-Baucells, A., Louzao, M., Madin, J. S., Magnússon, B., Malamud, S., Matthews, I., McFarland, K. P., McGill, B., McKnight, D., McLarney, W. O., Meador, J., Meserve, P. L., Metcalfe, D. J., Meyer, C. F. J., Michelsen, A., Milchakova, N., Moens, T., Moland, E., Moore, J., Mathias Moreira, C., Müller, J., Murphy, G., Myers-Smith, I. H., Myster, R. W., Naumov, A., Neat, F., Nelson, J. A., Paul Nelson, M., Newton, S. F., Norden, N., Oliver, J. C., Olsen, E. M., Onipchenko, V. G., Pabis, K., Pabst, R. J., Paquette, A., Pardede, S., Paterson, D. M., Pélissier, R., Peñuelas, J., Pérez-Matus, A., Pizarro, O., Pomati, F., Post, E., Prins, H. H. T., Priscu, J. C., Provoost, P., Prudic, K. L., Pulliainen, E., Ramesh, B. R., Mendivil Ramos, O., Rassweiler, A., Rebelo, J. E., Reed, D. C., Reich, P. B., Remillard, S. M., Richardson, A. J., Richardson, J. P., van Rijn, I., Rocha, R., Rivera-Monroy, V. H., Rixen, C., Robinson, K. P., Ribeiro Rodrigues, R., de Cerqueira Rossa-Feres, D., Rudstam, L., Ruhl, H., Ruz, C. S., Sampaio, E. M., Rybicki, N., Rypel, A., Sal, S., Salgado, B., Santos, F. A. M., Savassi-Coutinho, A. P., Scanga, S., Schmidt, J., Schooley, R., Setiawan, F., Shao, K. T., Shaver, G. R., Sherman, S., Sherry, T. W., Siciński, J., Sievers, C., da Silva, A. C., Rodrigues da Silva, F., Silveira, F. L., Slingsby, J., Smart, T., Snell, S. J., Soudzilovskaia, N. A., Souza, G. B. G., Maluf Souza, F., Castro Souza, V., Stallings, C. D., Stanforth, R., Stanley, E. H., Mauro Sterza, J., Stevens, M., Stuart-Smith, R., Rondon Suarez, Y., Supp, S., Yoshio Tamashiro, J., Tarigan, S., Thiede, G. P., Thorn, S., Tolvanen, A., Teresa Zugliani Toniato, M., Totland, Ø, Twilley, R. R., Vaitkus, G., Valdivia, N., Vallejo, M. I., Valone, T. J., Van Colen, C., Vanaverbeke, J., Venturoli, F., Verheye, H. M., Vianna, M., Vieira, R. P., Vrška, T., Quang Vu, C., Van Vu, L., Waide, R. B., Waldock, C., Watts, D., Webb, S., Wesołowski, T., White, E. P., Widdicombe, C. E., Wilgers, D., Williams, R., Williams, S. B., Williamson, M., Willig, M. R., Willis, T. J., Wipf, S., Woods, K. D., Woehler, E. J., Zawada, K., Zettler, M. L., Dornelas, M., Antão, L. H., Moyes, F., Bates, A. E., Magurran, A. E., Adam, D., Akhmetzhanova, A. A., Appeltans, W., Arcos, J. M., Arnold, H., Ayyappan, N., Badihi, G., Baird, A. H., Barbosa, M., Barreto, T. E., Bässler, C., Bellgrove, A., Belmaker, J., Benedetti-Cecchi, L., Bett, B. J., Bjorkman, A. D., Błażewicz, M., Blowes, S. A., Bloch, C. P., Bonebrake, T. C., Boyd, S., Bradford, M., Brooks, A. J., Brown, J. H., Bruelheide, H., Budy, P., Carvalho, F., Castañeda-Moya, E., Chen, C. A., Chamblee, J. F., Chase, T. J., Siegwart Collier, L., Collinge, S. K., Condit, R., Cooper, E. J., Cornelissen, J. H. C., Cotano, U., Kyle Crow, S., Damasceno, G., Davies, C. H., Davis, R. A., Day, F. P., Degraer, S., Doherty, T. S., Dunn, T. E., Durigan, G., Duffy, J. E., Edelist, D., Edgar, G. J., Elahi, R., Elmendorf, S. C., Enemar, A., Ernest, S. K. M., Escribano, R., Estiarte, M., Evans, B. S., Fan, T. Y., Turini Farah, F., Loureiro Fernandes, L., Farneda, F. Z., Fidelis, A., Fitt, R., Fosaa, A. M., Daher Correa Franco, G. A., Frank, G. E., Fraser, W. R., García, H., Cazzolla Gatti, R., Givan, O., Gorgone-Barbosa, E., Gould, W. A., Gries, C., Grossman, G. D., Gutierréz, J. R., Hale, S., Harmon, M. E., Harte, J., Haskins, G., Henshaw, D. L., Hermanutz, L., Hidalgo, P., Higuchi, P., Hoey, A., Van Hoey, G., Hofgaard, A., Holeck, K., Hollister, R. D., Holmes, R., Hoogenboom, M., Hsieh, C. H., Hubbell, S. P., Huettmann, F., Huffard, C. L., Hurlbert, A. H., Macedo Ivanauskas, N., Janík, D., Jandt, U., Jażdżewska, A., Johannessen, T., Johnstone, J., Jones, J., Jones, F. A. M., Kang, J., Kartawijaya, T., Keeley, E. C., Kelt, D. A., Kinnear, R., Klanderud, K., Knutsen, H., Koenig, C. C., Kortz, A. R., Král, K., Kuhnz, L. A., Kuo, C. Y., Kushner, D. J., Laguionie-Marchais, C., Lancaster, L. T., Min Lee, C., Lefcheck, J. S., Lévesque, E., Lightfoot, D., Lloret, F., Lloyd, J. D., López-Baucells, A., Louzao, M., Madin, J. S., Magnússon, B., Malamud, S., Matthews, I., McFarland, K. P., McGill, B., McKnight, D., McLarney, W. O., Meador, J., Meserve, P. L., Metcalfe, D. J., Meyer, C. F. J., Michelsen, A., Milchakova, N., Moens, T., Moland, E., Moore, J., Mathias Moreira, C., Müller, J., Murphy, G., Myers-Smith, I. H., Myster, R. W., Naumov, A., Neat, F., Nelson, J. A., Paul Nelson, M., Newton, S. F., Norden, N., Oliver, J. C., Olsen, E. M., Onipchenko, V. G., Pabis, K., Pabst, R. J., Paquette, A., Pardede, S., Paterson, D. M., Pélissier, R., Peñuelas, J., Pérez-Matus, A., Pizarro, O., Pomati, F., Post, E., Prins, H. H. T., Priscu, J. C., Provoost, P., Prudic, K. L., Pulliainen, E., Ramesh, B. R., Mendivil Ramos, O., Rassweiler, A., Rebelo, J. E., Reed, D. C., Reich, P. B., Remillard, S. M., Richardson, A. J., Richardson, J. P., van Rijn, I., Rocha, R., Rivera-Monroy, V. H., Rixen, C., Robinson, K. P., Ribeiro Rodrigues, R., de Cerqueira Rossa-Feres, D., Rudstam, L., Ruhl, H., Ruz, C. S., Sampaio, E. M., Rybicki, N., Rypel, A., Sal, S., Salgado, B., Santos, F. A. M., Savassi-Coutinho, A. P., Scanga, S., Schmidt, J., Schooley, R., Setiawan, F., Shao, K. T., Shaver, G. R., Sherman, S., Sherry, T. W., Siciński, J., Sievers, C., da Silva, A. C., Rodrigues da Silva, F., Silveira, F. L., Slingsby, J., Smart, T., Snell, S. J., Soudzilovskaia, N. A., Souza, G. B. G., Maluf Souza, F., Castro Souza, V., Stallings, C. D., Stanforth, R., Stanley, E. H., Mauro Sterza, J., Stevens, M., Stuart-Smith, R., Rondon Suarez, Y., Supp, S., Yoshio Tamashiro, J., Tarigan, S., Thiede, G. P., Thorn, S., Tolvanen, A., Teresa Zugliani Toniato, M., Totland, Ø, Twilley, R. R., Vaitkus, G., Valdivia, N., Vallejo, M. I., Valone, T. J., Van Colen, C., Vanaverbeke, J., Venturoli, F., Verheye, H. M., Vianna, M., Vieira, R. P., Vrška, T., Quang Vu, C., Van Vu, L., Waide, R. B., Waldock, C., Watts, D., Webb, S., Wesołowski, T., White, E. P., Widdicombe, C. E., Wilgers, D., Williams, R., Williams, S. B., Williamson, M., Willig, M. R., Willis, T. J., Wipf, S., Woods, K. D., Woehler, E. J., Zawada, K., and Zettler, M. L.

Abstract

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2). Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates. Software format:.csv and.SQL.

Published
2018

39. Ezetimibe added to statin therapy after acute coronary syndromes

Author

Cannon, Christopher P., Blazing, Michael A., Giugliano, Robert P., Mccagg, Amy, White, Jennifer A., Theroux, Pierre, Darius, Harald, Lewis, Basil S., Ophuis, Ton Oude, Jukema, J. Wouter, De Ferrari, Gaetano M., Ruzyllo, Witold, De Lucca, Paul, Kyungah, Im, Bohula, Erin A., Reist, Craig, Wiviott, Stephen D., Tershakovec, Andrew M., Musliner, Thomas A., Braunwald, Eugene, Califf, Musliner T, Robert M., Tershakovec, A, Gurfinkel, E, Aylward, P, Tonkin, A, Maurer, G, Van de Werf, F, Nicolau, Jc, Theroux, P, Genest, J, Armstrong, P, Corbalan, R, Isaza, D, Spinar, J, Grande, P, Voitk, J, Kesaniemi, A, Bassand, Jp, Farnier, M, Darius, H, Keltai, M, Mathur, A, Mittal, S, Reddy, K, Lewis, B, De Ferrari GM, Ophuis, To, Jukema, J, White, H, Pedersen, T, Britto, F, Ruzyllo, W, Carrageta, M, Duris, T, Dalby, A, Seung, Kb, Lopez-Sendon, J, Dellborg, M, Mach, F, Guneri, S, Parkhomenko, A, Brady, A, Cannon, C, Blazing, M, Ballantyne, C, de Lemos, J, Kleiman, N, Mcguire, Dk, Centeno, E, Casalins, M, Cartasegna, L, Beltrano, Mc, Guerrero, R, Fanuele, M, Berra, F, Egido, J, Colombo, H, Dellatorre, M, Terns, P, Blumberg, E, Reges, P, Azize, G, Ramos, H, Fernandez, R, Carlessi, C, Milesi, R, Schmuck, R, Duronto, E, Procopio, G, Carlevaro, O, Maffeo, H, Beloscar, J, Viso, M, Hominal, M, Castoldi, M, Bluguermann, J, Mauro, D, Macin, S, Cocco, N, Ruiz, N, Ricart, J, Lozada, A, Nani, S, Turri, D, Fernandez, H, Caruso, O, Zarandon, R, Bono, J, Arias, V, Allall, O, Marino, J, Cusimano, S, Schygiel, P, Buzetti, C, Penaloza, N, Berli, M, Worthley, S, Roach, A, Chew, D, Wright, T, Leitch, J, Hicks, E, Rankin, J, Venn-Edmonds, C, Lehman, R, Morrison, H, Shaw, J, Mak, V, Hii, C, Smith, K, Cross, D, Lilwall, L, Nelson, G, Loxton, A, Horowitz, J, Rose, J, Steinwender, C, Leisch, F, Kammler, J, Brussee, H, Zweiker, R, Niederl, E, Weihs, W, Giorgio, G, Lang, I, Drexel, H, Zanolin, D, Hoppe, U, Atzenhofer-Baumgartner, K, Pichler, M, Hainzer, D, Eber, B, Pichler, F, Foeger, B, Wechselberger, T, Mayr, H, Hofer, J, Stockenhuber, F, Warlits, B, Huber, K, Egger, F, Weidinger, F, Ziegler, B, Jirak, P, Metzler, B, Pachinger, O, Wanitschek, M, Auer, J, Grabscheit, G, Podczeck-Schweighofer, A, Priesnitz, T, Frank, H, El Allaf, D, Marechal, P, Roosen, J, Joly, E, Lefebvre, P, Arend, C, Sinnaeve, P, De Velder, L, Hellemans, S, Vanhauwaert, B, Van Dorpe, A, Heyse, A, Vantomme, C, Striekwold, H, Van Den Broeck, D, Lancellotti, P, Schoors, D, Lemoine, I, Taeymans, Y, De Wolf, L, Brike, C, Vercauteren, S, Tahon, S, Vervoort, G, Mestdagh, I, Pirenne, B, Cardinal, F, Lips, S, Dujardin, K, Debrouwer, K, Dhooghe, G, Holvoet, G, van de Borne, P, Renard, M, De Clippel, M, Lesseliers, H, Van Miert, N, Saraiva, J, Vicente, C, Rossi, P, Dos Santos LB, Duda, N, Tognon, Ap, Serrano, C, Gomes, Fl, Manenti, Er, Silveira, Ds, Maia, L, Mouco, Om, Paiva, M, Antonangelo, A, de Souza, J, Lino, Ea, Leães, P, Blacher, Mg, Kormann, A, Ultramari, Ft, Dutra, O, Mendelski, Am, Morgado, S, Ardito, W, Greque, G, Ardito, Rv, Pimentel Filho, P, Zucchetti, C, Alves, A, Seabra, Am, Mattos, M, Miranda, Lf, Silva, D, Uehara, Rm, Marin Neto, J, Schmidt, A, Braga, J, Rodrigues, A, Abrantes, J, Pinheiro, L, Bodanese, L, Magedanz, Éh, Piegas, L, Dos Santos ES, Wainstein, M, Ribeiro, J, Stein, R, Marino, R, Machado, Vm, Moraes Junior, J, Guimarães, S, da Costa FA, Ferraz, Rf, Albuquerque, D, Rocha, Rm, de Carvalho Moreira, R, Dohmann, H, Costantini, C, Tarastchuk, Jc, Coelho, O, Cirillo, W, Sousa, A, Almeira, As, Stefanini, E, Silva, F, Teixeira, M, da Cunha, C, Précoma, D, Facchi, Tl, Rupka, D, Thiessen, S, Warnica, J, Smith, B, Della Siega, A, Klinke, P, Nelson, S, Dion, D, Gilbert, N, Hui, W, Kvill, L, Sussex, B, Luther, A, Dupuis, R, Ouimet, F, Pandey, A, Clarus, S, Senaratne, M, Ferdinandis, H, Mukherjee, A, Bozek, B, Vizel, S, Markov, G, Zimmermann, R, Stephens, W, Tremblay, B, Wong, G, Uchida, N, Brossoit, R, Peck, C, Van Kieu, C, Forgione, M, Bata, I, Cossett, J, Kostuk, W, Arnold, M, Bone, C, Grondin, F, Bilodeau, N, Gosselin, G, David, M, Giannoccaro, J, Beresford, P, Polasek, P, Roberts, P, Doucet, M, Beaudry, M, Cheung, S, Cleveland, T, Bhargava, R, Mccallum, A, Ma, P, Morrissette, J, Cleveland, D, Chadwyn, D, Nigro, F, Weeks, A, Cryderman, C, Leader, R, Houde, G, Rousseau, S, Pearce, M, Radyk, M, Lonn, E, Magi, A, Lefkowitz, C, Sandrin, F, Coffin, N, Lubelsky, B, Coldwell, J, Habot, J, Mcpherson, C, De Larochelliere, R, Roy, M, Haichin, R, Barber, C, Bhesania, T, Kitagawa, H, To, T, Donnelly, B, Tymchak, W, Harris, L, Kouz, S, Huynh, T, St Jacques, B, Lamy, A, Rizzo, A, Stein, J, Childs, C, Wong, B, Poirier, R, Gupta, M, Dela Cruz, C, Constance, C, Gauthier, M, Ervin, F, Ouellette, M, Kokis, A, Lemay, C, Kwok, K, Leung, C, Lee, D, Nesmith, J, Renton, J, Syan, G, Turek, M, Hogan, D, Griffin, P, Lipson, A, Winestock, J, Abramson, B, Fogel, A, Gagne, C, Bergeron, J, Clarke, A, Slipp, S, Darcel, I, Carling-Chambers, L, Kannampuzha, P, Pallie, S, Krekorian, S, Vertes, G, Roth, S, Lai, K, Heath, J, Perez, L, Arriagada, G, Castro, P, Villa, F, Rodríguez, M, Ramos, G, Baraona, F, Núñez, A, García, M, Jofre, C, Silva, P, Lamich, R, Yovaniniz, P, Escobar, E, Dussaubat, A, Segura, E, Ramirez, M, Lapostol, C, Palma, A, Encina, L, Zapata, M, Baeza, N, Varela, P, Pérez, L, Jaramillo, C, Ruiz, S, Sanchez, G, Perdomo, I, Manzur, F, Cohen, Le, Velasquez, J, Arana, C, Alvarez, Y, Triana, M, Balaguera, J, de Salazar, D, Rendon, N, Botero, R, Ruiz, A, Saaibi, J, Medina, J, Jaramillo, M, Calderón, Mj, Delgado, J, Bohorquez, R, Medina, Mf, Herrera, M, Rosales, D, Mendoza, F, Martinez, S, Ternera, A, Castro, R, Baiz, A, Martinez, M, Orozco, A, Suarez, M, Fonseca, Y, Beltran, R, Cepeda, M, Jaramillo, N, Valenzuela, C, Gutierrez, M, Sanchez, A, Vitovec, J, Hlinomaz, O, Poloczek, M, Mayer, O, Veselka, J, Vejvoda, J, Soucek, M, Spac, J, Novobilsky, K, Srp, V, Francek, L, Branny, M, Sknouril, L, Motovska, Z, Rohac, F, Stankova, A, Fiala, T, Holub, M, Zeman, K, Pohludkova, L, Pospisilova, E, Tuma, P, Cihalik, C, Oral, I, Podpera, I, Stepanovova, R, Uricar, M, Solar, M, Pelouch, R, Porzer, M, Grussmannova, K, Stipal, R, Reichert, P, Hradec, J, Kral, J, Sejkova, B, Janek, B, Pitha, J, Linhart, A, Polacek, P, Koeber, L, Clemmensen, P, Hebin, Ch, Schmidt, E, Pedersen, Ms, Roseva-Nielsen, N, Kristensen, K, Bang-Hansen, T, Jensen, J, Laage-Petersen, J, Nielsen, H, Stokholm, E, Thayssen, P, Cappelen, H, Jensen, T, Winther-Friis, B, Klausen, I, Hedegaard, B, May, O, Andersen, M, Bottzauw, J, Lush, A, Markenvard, J, Vestager, Km, Bronnum-Schou, J, Hempel, H, Petersen, J, Nielsen, Aj, Thomsen, K, Nielsen, T, Nygaard, A, Sykulski, R, Jensen, Bs, Ralfkiaer, N, Gottschalck, H, Rasmussen, S, Pedersen, Lr, Dodt, K, Skovsbøl, M, Andersen, O, Tuxen, C, Meier, Aw, Kristensen, T, Rasmussen, O, Lopez, J, Salazar, D, Sanchez, L, Rosero, F, Penaherrera, E, Duarte, Yc, Marmol, R, Andrade, G, Guzman, E, Morillo, A, Aug, L, Loogna, I, Laanmets, P, Mustonen, J, Mäntylä, P, Kesäniemi, A, Ukkola, O, Kervinen, H, Juhela, S, Juvonen, J, Toppinen, A, Jarvenpaa, J, Syvanne, M, Svahn, T, Voutilainen, S, Huotari, A, Nikkila, M, Raiskinmäki, S, 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Goudreau, E., Sears, M., Istfan, P., Holt, S., McClung, J., Nguyen, N., Quintana, O., Gottlieb, D., Knutson, T., Barringhaus, K., Lester, F., Sullivan, P., Rodriguez-Ospina, L., Cannon, Cp, Blazing, Ma, Giugliano, Rp, Mccagg, A, White, Ja, Theroux, P, Darius, H, Lewis, B, Ophuis, To, Jukema, Jw, De Ferrari, Gm, Ruzyllo, W, De Lucca, P, Im, K, Bohula, Ea, Reist, C, Wiviott, Sd, Tershakovec, Am, Musliner, Ta, Braunwald, E, Califf, Rm, for the IMPROVE-IT, Investigator, Cianflone, D, Cardiovascular Division (SZG), Brigham and Women's Hospital [Boston], College of Information Science and Engineering, Ritsumeikan University, Montreal Heart Institute (MONTREAL HEART INSTITUTE), Laboratoire des Micro-algues toxiques, Institut Louis Malardé [Papeete] (ILM), Institut de Recherche pour le Développement (IRD)-Institut de Recherche pour le Développement (IRD), Interuniversity Cardiology Institute Netherlands, Institute of Cardiology (WARSAW - Cardiology), Institute of Cardiology, Merck Sharp & Dohme Corp., Merck & Co. Inc, DIPARTIMENTO DI MEDICINA SPECIALISTICA, DIAGNOSTICA E SPERIMENTALE, Facolta' di MEDICINA e CHIRURGIA, AREA MIN. 06 - Scienze mediche, Cannon, C.P., Blazing, M.A., Giugliano, R.P., Mccagg, A., White, J.A., Lewis, B.S., Jukema, J.W., De Lucca, P., Im, K., Bohula, E.A., Reist, C., Wiviott, S.D., Tershakovec, A.M., Musliner, T.A., Braunwald, E., Califf, R.M., for the IMPROVE-IT Investigators [.., C. Rapezzi, ], Other departments, Cannon, Christopher P, Blazing, Michael A., Giugliano, Robert P., Mccagg, Amy, White, Jennifer A., Theroux, Pierre, Darius, Harald, Lewis, Basil S., Ophuis, Ton Oude, Jukema, J. Wouter, De Ferrari, Gaetano M., Ruzyllo, Witold, De Lucca, Paul, Kyungah, Im, Bohula, Erin A., Reist, Craig, Wiviott, Stephen D., Tershakovec, Andrew M., Musliner, Thomas A., Braunwald, Eugene, and Califf, Robert M.

Subjects
Male, Simvastatin, acute coronary syndrome, aged, anticholesteremic agents, azetidines, cardiovascular diseases, cholesterol, ldl, double-blind method, drug therapy, combination, ezetimibe, female, humans, hydroxymethylglutaryl-coa reductase inhibitors, kaplan-meier estimate, male, middle aged, simvastatin, triglycerides, medicine (all, [SDV]Life Sciences [q-bio], Kaplan-Meier Estimate, 030204 cardiovascular system & hematology, Bococizumab, Triglyceride, chemistry.chemical_compound, 0302 clinical medicine, Azetidine, Cardiovascular Disease, Anticholesteremic Agent, Acute Coronary Syndrome, Aged, Anticholesteremic Agents, Azetidines, Cardiovascular Diseases, Cholesterol, LDL, Double-Blind Method, Drug Therapy, Combination, Female, Humans, Hydroxymethylglutaryl-CoA Reductase Inhibitors, Middle Aged, Triglycerides, 030212 general & internal medicine, Medicine (all), Research Support, Non-U.S. Gov't, Hazard ratio, General Medicine, Acute Coronary Syndrome, Aged, Anticholesteremic Agents, Azetidines, Cardiovascular Diseases, Ezetimibe, Female, Humans, Male, Middle Aged, 3. Good health, Multicenter Study, Editorial, Cholesterol, Randomized Controlled Trial, Combination, Ezetimibe, lipids (amino acids, peptides, and proteins), Human, medicine.drug, medicine.medical_specialty, Acute Coronary Syndroms, Urology, Acute Coronary Syndrome/drug therapy, Anticholesteremic Agents/adverse effects, Anticholesteremic Agents/therapeutic use, Azetidines/adverse effects, Azetidines/therapeutic use, Cardiovascular Diseases/epidemiology, Cardiovascular Diseases/mortality, Cardiovascular Diseases/prevention & control, Cholesterol, LDL/blood, Hydroxymethylglutaryl-CoA Reductase Inhibitors/adverse effects, Hydroxymethylglutaryl-CoA Reductase Inhibitors/therapeutic use, Simvastatin/therapeutic use, Triglycerides/blood, NO, LDL, 03 medical and health sciences, [SDV.MHEP.CSC]Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system, Drug Therapy, Internal medicine, Journal Article, medicine, Comparative Study, Alirocumab, business.industry, PCSK9, ta3121, Lomitapide, DOENÇAS CARDIOVASCULARES, Endocrinology, chemistry, Statin Therapy, Hydroxymethylglutaryl-CoA Reductase Inhibitor, business, [SDV.MHEP]Life Sciences [q-bio]/Human health and pathology
Abstract

BACKGROUND: Statin therapy reduces low-density lipoprotein (LDL) cholesterol levels and the risk of cardiovascular events, but whether the addition of ezetimibe, a nonstatin drug that reduces intestinal cholesterol absorption, can reduce the rate of cardiovascular events further is not known.METHODS: We conducted a double-blind, randomized trial involving 18,144 patients who had been hospitalized for an acute coronary syndrome within the preceding 10 days and had LDL cholesterol levels of 50 to 100 mg per deciliter (1.3 to 2.6 mmol per liter) if they were receiving lipid-lowering therapy or 50 to 125 mg per deciliter (1.3 to 3.2 mmol per liter) if they were not receiving lipid-lowering therapy. The combination of simvastatin (40 mg) and ezetimibe (10 mg) (simvastatin-ezetimibe) was compared with simvastatin (40 mg) and placebo (simvastatin monotherapy). The primary end point was a composite of cardiovascular death, nonfatal myocardial infarction, unstable angina requiring rehospitalization, coronary revascularization (≥30 days after randomization), or nonfatal stroke. The median follow-up was 6 years.RESULTS: The median time-weighted average LDL cholesterol level during the study was 53.7 mg per deciliter (1.4 mmol per liter) in the simvastatin-ezetimibe group, as compared with 69.5 mg per deciliter (1.8 mmol per liter) in the simvastatin-monotherapy group (PCONCLUSIONS: When added to statin therapy, ezetimibe resulted in incremental lowering of LDL cholesterol levels and improved cardiovascular outcomes. Moreover, lowering LDL cholesterol to levels below previous targets provided additional benefit. (Funded by Merck; IMPROVE-IT ClinicalTrials.gov number, NCT00202878.).

Published
2015
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44. Safety of pirfenidone in patients with idiopathic pulmonary fibrosis: integrated analysis of cumulative data from 5 clinical trials

Author

Lancaster, L., Albera, C., Bradford, W. Z., Costabel, U, Du Bois, R. M., Fagan, E. A., Fishman, R. S., Glaspole, I, Glassberg, M. K, King, T. E., J, R., Lederer, D. J., Lin, Z., Nathan, S. D., Pereira, C. A., Swigris, J. J., Valeyre, D., and Noble, P. W.

Subjects
Pulmonary and Respiratory Medicine, medicine.medical_specialty, Nausea, Medizin, Interstitial Lung Disease, 03 medical and health sciences, Idiopathic pulmonary fibrosis, 0302 clinical medicine, Internal medicine, medicine, 030212 general & internal medicine, Adverse effect, business.industry, Interstitial lung disease, Pirfenidone, medicine.disease, Rash, Surgery, Discontinuation, Interstitial Fibrosis, Clinical trial, 030228 respiratory system, medicine.symptom, business, medicine.drug
Abstract

Background Pirfenidone is an oral antifibrotic agent that has been shown to reduce the decline in lung function in patients with idiopathic pulmonary fibrosis (IPF). We performed an integrated analysis of safety data from five clinical trials evaluating pirfenidone in patients with IPF. Methods All patients treated with pirfenidone in the three multinational Phase 3 studies (CAPACITY (studies 004 and 006), ASCEND (study 016)) and two ongoing open-label studies (study 002 and study 012 (RECAP)) were included in the analysis. Safety outcomes were assessed during the period from the first dose until 28 days after the last dose of study drug. Results A total of 1299 patients were included in the analysis. The cumulative total exposure to pirfenidone was 3160 person exposure years (PEY). The median duration of exposure was 1.7 years (range 1 week to 9.9 years), and the mean (±SD) daily dose was 2053.8 (±484.9) mg. Gastrointestinal events (nausea (37.6%), diarrhoea (28.1%), dyspepsia (18.4%), vomiting (15.9%)) and rash (25.0%) were the most common adverse events; these were generally mild to moderate in severity and without significant clinical consequence. Elevations in alanine aminotransferase or aspartate aminotransferase greater than three times the upper limit of normal occurred in 40/1299 (3.1%) patients (adjusted incidence, 2.3 per 100 PEY). Elevations were generally transient and reversible with dose modification or discontinuation. Conclusions A comprehensive analysis of safety outcomes in a large and well-defined cohort of 1299 patients with IPF who were followed prospectively for up to 9.9 years demonstrated that long-term treatment with pirfenidone is safe and generally well tolerated. Trial registration numbers NCT00287716, NCT00287729, NCT00662038, NCT01366209.

Published
2016

46. Utilization of Agro-Industrial Waste in Metal Matrix Composites: Towards Sustainability

Author

F. E. Tang, ME Rahman, M V Prasana, L Ngu, G. Rajamohan, Z Oo, Lancaster, L., Sujan, Debnath, N 0 Lancaster, L., F. E. Tang, ME Rahman, M V Prasana, L Ngu, G. Rajamohan, Z Oo, Lancaster, L., Sujan, Debnath, and N 0 Lancaster, L.

Abstract

The application of agro-industrial waste in Aluminum Metal Matrix Composites has been getting more attention as they can reinforce particles in metal matrix which enhance the strength properties of the composites. In addition, by applying these agro-industrial wastes in useful way not only save the manufacturing cost of products but also reduce the pollutions on environment. This paper represents a literature review on a range of industrial wastes and their utilization in metal matrix composites. The paper describes the synthesis methods of agroindustrial waste filled metal matrix composite materials and their mechanical, wear, corrosion, and physical properties. It also highlights the current application and future potential of agroindustrial waste reinforced composites in aerospace, automotive and other construction industries.

Published
2012

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