82 results on '"Le Franc, Yann"'
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2. Developing and implementing the semantic interoperability recommendations of the EOSC Interoperability Framework
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Nyberg Åkerström, Wolmar, Baumann, Kurt, Corcho, Oscar, David, Romain, Le Franc, Yann, Madon, Bénédicte, Magagna, Barbara, Micsik, András, Molinaro, Marco, Ojsteršek, Milan, Peroni, Silvio, Scharnhorst, Andrea, Vogt, Lars, Widmann, Heinrich, Nyberg Åkerström, Wolmar, Baumann, Kurt, Corcho, Oscar, David, Romain, Le Franc, Yann, Madon, Bénédicte, Magagna, Barbara, Micsik, András, Molinaro, Marco, Ojsteršek, Milan, Peroni, Silvio, Scharnhorst, Andrea, Vogt, Lars, and Widmann, Heinrich
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This document expands on and provides nuance to some of the concepts defined in the EOSC Interoperability Framework report from the EOSC Executive Board Working Groups (WG) FAIR and Architecture published in 2021 and the conceptualisation of an EOSC Interoperability Framework that it embodies (EOSC-IF). It accounts for a deep-dive into the landscape of semantic interoperability implementations and a wide range of interoperability scenarios focused around the Semantic Interoperability Specification, some subtypes of Semantic Business Objects, as well as the Semantic Artefact Catalogue and Mapping Repository. A small set of new concepts of relevance to this work and to EOSC at large have also been added. The introduction provides context to the creation of this report, the basic concepts section provides and overview of the related components of the EOSC-IF, and the following four sections summarise explorations that frame the concluding set of recommendations to the EOSC community at large. The explorations that frame the recommendations are titled as follows: The Semantic Interoperability Specification: Implementation profiles for communities The Semantic Artefact Catalogue: Twelve maturity dimensions The Mapping Repository: Making a case for FAIR mappings and crosswalks Implementation examples: Common use cases and real-world case studies The recommendations themselves are organised under the following five broad categories: Align emerging adaptations and implementations to the Semantic View of the EOSC-IF (pp. 39–42) reference architecture. Identify and consolidate different approaches to representing and exchanging (meta)data with the FAIR Digital Objects model described in the EOSC-IF (pp. 29–34). Extend the EOSC-IF to include a research process perspective that can support convergence on solutions for common use cases. Extend the set of Semantic Business Objects described in the EOSC-IF (pp. 40–41) to include artefacts such as mappings and crosswalks. Recognis, This is a report of the EOSC Association’s Task Force Semantic Interoperability (2021–2023). The document was developed in continuous consultation with the task force membership (September 2023–March 2024), where a subgroup of the membership actively contributed to authoring the text. The document was submitted to EOSC Association’s Quality Review Committee (QRC) and an open community consultation on 18 January. The response to the reviewer’s comments was submitted on 12 March and the current version was approved with minor revisions on 27 March. Read more about the EOSC Association, the role of its task forces and the task forces’ membership on the eosc.eu website.
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- 2024
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3. Converging on a Semantic Interoperability Framework for the European Data Space for Science, Research and Innovation (EOSC)
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David, Romain, Baumann, Kurt, Le Franc, Yann, Magagna, Barbara, Vogt, Lars, Widmann, Heinrich, Jouneau, Thomas, Koivula, Hanna, Madon, Bénédicte, Åkerström, Wolmar Nyberg, Ojsteršek, Milan, Scharnhorst, Andrea, Schubert, Chris, Shi, Zhengdong, Tanca, Letizia, Vancauwenbergh, Sadia, European Research Infrastructure on Highly Pathogenic Agents (ERINHA-AISBL), SWITCH, e-Science Data Factory [Paris] (e-SDF), GO FAIR Foundation, TIB Leibniz Information Centre For Science and Technology University Library, German Climate Computing Center (DKRZ), Université de Lorraine (UL), Life Science Center Keilaniemi, LIttoral ENvironnement et Sociétés (LIENSs), La Rochelle Université (ULR)-Centre National de la Recherche Scientifique (CNRS), Universidad de Sevilla / University of Sevilla, National Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University-Stockholm University-Department of Biochemistry and Biophysics, Stockholm University-Stockholm University, Faculty of Electrical Engineering and Computer Science, University of Maribor, Royal Netherlands Academy of Arts and Sciences (KNAW), Vienna University of Technology (TU Wien), Université Paris-Saclay, Politecnico di Milano [Milan] (POLIMI), Hasselt University (UHasselt), This research is a product of the Task Force 'Semantic Interoperability' of the EOSC Association,the legal entity established to govern the European Open Science Cloud (EOSC). Complementary support and information were provided through European projects projects 'EOSC-Life'(Nº824087), 'EOSC-Future' (Nº101017536) and 'FAIR Impact' (Nº101057344)., Cassia Trojahn, Luiz Olavo Bonino da Silva Santos, Giancarlo Guizzardi, Clement Jonquet, FAIR Impact, EOSC Association, EOSC Future, EOSC Life, European Project: 824087,EOSC-Life, European Project: EOSC Association, European Project: 101057344,FAIR-IMPACT, and European Project: 101017536,EOSC Future
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FAIR Principles ,Roadmap ,definitions ,Semantic interoperability ,Interoperable ,Semantic interoperability, European Open Science Cloud, Crosswalk, Roadmap, Interoperable, FAIR Principles, definitions, linked data, machine actionability ,Semantic interoperability European Open Science Cloud Crosswalk Roadmap Interoperable FAIR Principles definitions linked data machine actionability ,[SCCO.COMP]Cognitive science/Computer science ,machine actionability ,linked data ,[INFO.INFO-CL]Computer Science [cs]/Computation and Language [cs.CL] ,European Open Science Cloud ,Crosswalk - Abstract
Semantic interoperability (SI) is at the heart of the FAIR principles and the design of large-scale cross-disciplinary infrastructures. The European Open Science Cloud (EOSC) is a European-wide effort towards such an infrastructure, aiming to deepen regional research collaboration and realising a shared data space for science, research and innovation. In this context, the research community’s voice is represented by the EOSC Association (EOSC-A) and a number of advisory groups with a broad range of representatives from different stakeholder organisations. The advisory group on metadata and data quality has formed a task force focusing on developing and implementing recommendations for SI (EOSC SI Task Force) to converge on globally relevant and scalable SI solutions for EOSC. This paper provides context to SI in EOSC, the various components contributing to it, as well as some views on the socio-technical challenges to arriving at a consensus. In particular, the paper provides motivation for exploring the heterogeneity of SI solutions demonstrated across scientific communities and insight into the task force’s planned approach to conducting a survey to identify relevant components and structures. The paper is also an invitation to the global community to align and engage with the task force’s activities going forward., This research is a product of the Task Force "Semantic Interoperability" of the EOSC-Association European, the legal entity established to govern the European Open Science Cloud (EOSC). Complementary support and information were provided through European projects "EOSC-Life" (No824087) and "FAIR Impact" (No101057344). This paper is linked to the Supplementary Material - Magagna, Barbara, Baumann, Kurt, David, Romain, Jouneau, Thomas, Le Franc, Yann, Koivula, Hanna, Madon, Bénédicte, Nyberg Åkerström, Wolmar, Ojsteršek, Milan, Scharnhorst, Andrea, Schubert, Chris, Shi, Zhengdong, Tanca, Letizia, Vancauwenbergh, Sadia, Vogt, Lars, & Widmann, Heinrich. (2023). Proposal for the EOSC Semantic Interoperability Questionnaire (1.0.2). 2nd Workshop on Ontologies for FAIR and FAIR Ontologies (Onto4FAIR), Sherbrooke, Québec (Canada). Zenodo. https://doi.org/10.5281/zenodo.8028392 This Supplementary Material will be updated during the process of the survey-completion, {"references":["Magagna, Barbara, Baumann, Kurt, David, Romain, Jouneau, Thomas, Le Franc, Yann, Koivula, Hanna, Madon, Bénédicte, Nyberg Åkerström, Wolmar, Ojsteršek, Milan, Scharnhorst, Andrea, Schubert, Chris, Shi, Zhengdong, Tanca, Letizia, Vancauwenbergh, Sadia, Vogt, Lars, & Widmann, Heinrich. (2023). Proposal for the EOSC Semantic Interoperability Questionnaire (1.0.2). 2nd Workshop on Ontologies for FAIR and FAIR Ontologies (Onto4FAIR), Sherbrooke, Québec (Canada). Zenodo. https://doi.org/10.5281/zenodo.8028392"]}
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- 2023
4. Inward Rectifier Potassium Channels
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Le Franc, Yann, Jaeger, Dieter, editor, and Jung, Ranu, editor
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- 2015
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5. Consulting with Global Data Communities to Converge on Semantic Interoperability Solutions for the European Data Space for Science, Research and Innovation (EOSC)
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Baumann, Kurt, David, Romain, Le Franc, Yann, Vogt, Lars, Widmann, Heinrich, Juneau, Thomas, Koivula, Hanna, Madon, Bénédicte, Nyberg Åkerström, Wolmar, Ojsteršek, Milan, Scharnhorst, Andrea, Schubert, Chris, Shi, Zhengdong, Tanca, LETIZIA, Vancauwenbergh, Sadia, Baumann, Kurt, David, Romain, Le Franc, Yann, Vogt, Lars, Widmann, Heinrich, Juneau, Thomas, Koivula, Hanna, Madon, Bénédicte, Nyberg Åkerström, Wolmar, Ojsteršek, Milan, Scharnhorst, Andrea, Schubert, Chris, Shi, Zhengdong, Tanca, LETIZIA, and Vancauwenbergh, Sadia
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This poster was presented during the Poster Exhibition session at the Research Data Alliance (RDA) 21st Plenary during International Data Week 2023 in Salzburg, Austria on 23–26 October 2023. It was submitted by Kurt Baumann on behalf of the EOSC Semantic Interoperability Task Force. Description of the poster Interoperability is at the heart of the FAIR principles and the design of large-scale cross-disciplinary infrastructures. The European Open Science Cloud (EOSC) is a European-wide effort towards such an infrastructure, aiming to deepen regional research collaboration and realising a shared data space for science, research and innovation. The advisory group on metadata and data quality has formed a task force focusing on developing and implementing recommendations for SI (EOSC SI Task Force). This poster serves as an invitation to the global RDA community to join forces with the European research stakeholders to converge on globally relevant and scalable solutions for Semantic Interoperability (SI). Semantic Interoperability is in fact not easy to implement. Any strategy for achieving SI must take this complexity into account. The poster presents the work of a stakeholder organisation that represents the research community's voice in EOSC and focuses on the activities of a task force developing and implementing recommendations for SI. Realising solutions for semantic interoperability involves a broad spectrum of socio-technical challenges. The poster will give insights into the chosen approach and structure of an ongoing survey that will result in a landscape overview of the use of components required to enable SI across a wide range of disciplines and use cases. Individual members of the task force are already committed contributors across various RDA interest groups and working groups and by presenting this poster the ambition is to showcase existing synergies and to identify new venues for collaborations. EOSC Project m
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- 2023
6. Knowledge Organisation Systems in the humanities - semantic interoperability in practice
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Scharnhorst, Andrea, Flohr, Pascal, Tykhonov, Vyacheslav, de Vries, Jerry, Hollander, Hella, Touber, Jetze, Hugo, Wim, Smiraglia, Richard P., Le Franc, Yann, Siebes, Ronald, Meijers, Enno, Scharnhorst, Andrea, Flohr, Pascal, Tykhonov, Vyacheslav, de Vries, Jerry, Hollander, Hella, Touber, Jetze, Hugo, Wim, Smiraglia, Richard P., Le Franc, Yann, Siebes, Ronald, and Meijers, Enno
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We observe a growing universe of machine-readable knowledge organisation systems (KOS) or even wider ‘semantic artifacts. We see at the same time, various attempts to bring semantic artifacts together via registries, catalogues and via cross-walks among ontologies. This poster reflects how newest research on semantic interoperability informs current practice for research data repositories and registry service providers. We focus on the domain of humanities and cultural heritage, using different examples from Europe and the Netherlands: The European Archaeological Data Infrastructure Ariadne, services of the Dutch Cultural Heritage Network and two Data Stations (for Archaeology and for SSH) hosted at DANS-KNAW. For those cases we report on current efforts to include ‘semantic artifacts’, together with opportunities and challenges. This poster is a practice report combined with an invitation to reflect about the context of semantic interoperability itself.
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- 2023
7. M5.3 Semantic artefact assessment methodology
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Verburg (Maaike), M. L, Garijo, Daniel, Poveda-Vallalón, María, Flohr, Pascal, Gonzalez-Beltran, Alejandra, Le Franc, Yann, Verburg (Maaike), M. L, Garijo, Daniel, Poveda-Vallalón, María, Flohr, Pascal, Gonzalez-Beltran, Alejandra, and Le Franc, Yann
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Presentation of the methodology proposed for semantic artefact FAIR assessment. Semantic artefacts (i.e., ontologies, vocabularies and SKOS taxonomies, among others) define the structure, guide the construction of, and help validate many existing Knowledge Graphs. In the last years, a number of guidelines have been proposed (Poveda-Villalón et al. 2020; Garijo and Poveda-Villalón 2020; Hugo et al. 2020; Le Franc et al., 2022; Xu et al. 2023) to align semantic artefact best practices against the Findable, Accessible, Interoperable and Reusable principles (FAIR principles) (Wilkinson et al. 2016). Based on these guidelines, new validators and assistants have been developed (Garijo et al. 2021; Amdouni et al. 2022a; 2022b) in order to guide users assessing their own semantic artefacts against the FAIR principles. However, different tests are based on different interpretations of the FAIR principles, resulting in different scores and checks for semantic artefacts. To the best of our knowledge, there is no generic methodology grouping the types of tests to perform in semantic artefacts, in order to map existing assessment efforts in a consistent manner. In this document, we propose such a methodology. We do so by taking an ontology development perspective, dividing semantic artefacts into smaller parts (their code, content, ontology metadata, etc.) that can be individually assessed at different stages of their development process. We build on the Linked Open Terms (LOT) methodology (Poveda-Villalón et al. 2022), adding a “FAIR assessment” module, and, for each activity, we validate our approach by mapping to two existing semantic artefact FAIR assessment validators: FOOPS! (Garijo et al. 2021) and O’FAIRe (Amdouni et al. 2022a; 2022b). The rest of the document outlines our methodology, describes each step in detail, and maps it to existing FAIR principles and guidelines.
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- 2023
8. Proposal for the EOSC Semantic Interoperability Questionnaire
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Magagna, Barbara, Baumann, Kurt, David, Romain, Jouneau, Thomas, Le Franc, Yann, Koivula, Hanna, Madon, Bénédicte, Nyberg Åkerström, Wolmar, Ojsteršek, Milan, Scharnhorst, Andrea, Schubert, Chris, Shi, Zhengdong, Tanca, Letizia, Vancauwenbergh, Sadia, Vogt, Lars, Widmann, Heinrich, Magagna, Barbara, Baumann, Kurt, David, Romain, Jouneau, Thomas, Le Franc, Yann, Koivula, Hanna, Madon, Bénédicte, Nyberg Åkerström, Wolmar, Ojsteršek, Milan, Scharnhorst, Andrea, Schubert, Chris, Shi, Zhengdong, Tanca, Letizia, Vancauwenbergh, Sadia, Vogt, Lars, and Widmann, Heinrich
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This document provides supplementary material for the paper "Converging towards a Semantic interoperability framework for EOSC: understanding the different community solutions to semantic interoperability" submitted as a contribution to the 2nd Workshop on Ontologies for FAIR and FAIR Ontologies (Onto4FAIR). Its purpose is to provide additional information and insights about the questionnaire approach proposed to survey the resources utilised by communities in addressing semantic interoperability issues. This document will be used as a guide in the implementation of the questionnaire, planned to be ready by the end of June. The survey itself will be ongoing over the summer and terminate at the end of September 2023.
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- 2023
9. EOSC-Pillar D5.7 FAIR Research Data Management Workbench Operation Report Update
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Candela, Leonardo, Frosini, Luca, Le Franc, Yann, Mangiacrapa, Francesco, Rouchon, Olivier, and Toulemonde, Baptiste
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EOSC ,FAIR data - Abstract
EOSC-Pillar developed and integrated a set of tools and services overall supporting the construction and maintenance of an aggregated data space implementing the FAIR principles. This deliverable documents the activities and results (e.g., indicators on integrated data providers, and datasets, indicators on datasets accesses) of the operation of the EOSC-Pillar toolset enacting the development of the EOSC-Pillar data space. This is the revised and final release of this typology of deliverable offering information up to November 2022.
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- 2023
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10. D4.5 Business Model and sustainability study
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Reichenbach, Rebecca, Czuray, Marie, Hermans, Emilie, Gall, Monika, van Wezel, Jos, Le Franc, Yann, Galeazzi, Fulvio, Di Giorgio, Sara, Breton, Vincent, Huynh, Frédéric, and Romier, Geneviève
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This deliverable documents the results of EOSC-Pillar Task 4.5 activity. It summarises its findings regarding sustainable business models collected through surveys, interviews and workshops involving EOSC stakeholders in Austria, Belgium, France, Germany and Italy. The picture emerging from these exchanges at EOSC-Pillar scale is a complex and fragmented landscape where there is no single answer to the question of the preferred Business Model for national Open Science initiatives, thematic research infrastructures and service providers. Our conclusions have to be put in perspective in the quickly evolving context at national and international levels with all the uncertainties related to the outcome of the EOSC procurement tenders by the European Commission and the evolution of the energy price. The priority is not to freeze a business model for EOSC but rather continue exploringall avenues to keep the services free at the point of use. 
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- 2023
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11. Re-Creating In Vivo-Like Activity and Investigating the Signal Transfer Capabilities of Neurons: Dynamic-Clamp Applications Using Real-Time Neuron
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Sadoc, Gerard, Le Masson, Gwendal, Foutry, Bruno, Le Franc, Yann, Piwkowska, Zuzanna, Destexhe, Alain, Bal, Thierry, Bal, Thierry, editor, and Destexhe, Alain, editor
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- 2009
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12. Common Minimum Metadata for FAIR Semantic Artefacts
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Jonquet, Clement, Dutta, Biswanath, Santos, Luiz O. Bonino da Silva, Pergl, Robert, Le Franc, Yann, WEB Architecture x Semantic WEB x WEB of Data (WEB3), Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier (LIRMM), Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie (MISTEA), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Indian Statistical Institute [Bangalore] (ISI), University of Twente, Leiden University Medical Center (LUMC), Universiteit Leiden, Czech Technical University in Prague (CTU), e-Science Data Factory [Paris] (e-SDF), RDA Vocabulary Semantic Services Interest Group, ANR-18-CE23-0017,D2KAB,Des Données aux Connaissances en Agronomie et Biodiversité(2018), European Project: 831558,FAIRsFAIR, and European Project: 101057344,FAIR-IMPACT
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[INFO.INFO-TT]Computer Science [cs]/Document and Text Processing ,Metadata ,Minimal metadata model ,[INFO.INFO-IR]Computer Science [cs]/Information Retrieval [cs.IR] ,[INFO.INFO-WB]Computer Science [cs]/Web ,Ontologies ,Semantic artefacts ,FAIRness assessment ,Vocabularies ,FAIR ,[INFO.INFO-AI]Computer Science [cs]/Artificial Intelligence [cs.AI] - Abstract
Semantic interoperability is crucial for the FAIR Principles and strongly relies on Semantic Artefacts that also need to be FAIR. To achieve this, semantic artefacts require rich, structured, and interoperable metadata. The challenge lies in determining the threshold for "rich metadata" and agreeing on a common minimum set. The H2020 FAIRsFAIR project and the RDA Vocabulary Semantic Services Interest Group addressed this question by developing a "minimal metadata model" for semantic artefacts. In this paper, we present background information, methodology, discussions and workshops which contribute to the establishment of the FAIRsFAIR minimum metadata profile for semantic artefacts. We present an extension of the Metadata for Ontology Description and Publication Ontology (MOD2.0) incorporating this profile as well as its implementation (SemanticDCAT-AP) and its use to build FAIRcat, a prototype of a FAIR Data Point harvesting the content of multiple semantic artefact catalogues.
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- 2022
13. EOSC-Pillar D5.6 FAIR Research Data Management tool set - update v1_1
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Candela, Leonardo, Frosini, Luca, Mangiacrapa, Francesco, Rouchon, Olivier, Toulemonde, Baptiste, and Le Franc, Yann
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EOSC ,FAIR data ,FAIR principles ,RDM ,Research Data Management - Abstract
This document is an update of D5.1, a report accompanying the delivery of the bundle of service instance(s) resulting from T5.1 and T5.2 activities. It provides a short summary of the work, the list of services and how to access them as also described in D5.2. The tool set aims at offering solutions for Research Data Management promoting the implementation of FAIR principles and practices.
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- 2022
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14. M2.14_Final task workshop to demonstrate the implemented interoperability prototype
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Behnke, Claudia, Burger, Kees, Vinchon, Louis, Le Franc, Yann, Bonino, Luiz, Tykhonov, Vyacheslav, Parland-von Essen, Jessica, J��rvel��inen, Pekka, and Kaliyaperumal, Rajaram
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sematic ,FAIR - Abstract
The Goal is to get the latest FAIR Data Point protocol supported by 1 or 2 of the working repositories selected by FAIRsFAIR at the beginning of the project, showing and proving interoperability between different implementations and automatic integration of catalogue information from different implementations. We would like to have technical people from the repositories on board, so that the implementation that will be worked on could be a branch of the official code, being close to an actual implementation by the running deployment of the repositories later. Note that what we are striving for is adding an FDP API, not replacing any existing repository functionality but adding an additional way that makes repositories more semantically interoperable and machine-actionable.
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- 2021
15. Earth and Environmental vocabularies and ontologies today: how are they managed? How are they used by scientists?
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Laporte, Marie Angélique, Guru, Siddeswara, Archambeau, Anne-Sophie, Le Bras, Yvan, Hugo, Wim, Le Franc, Yann, Magagna, Barbara, David, Romain, O'Brien, Margaret, Specht, Alison, Stall, Shelley, and Wyborn, Lesley
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researcher needs ,international ,earth sciences ,ontologies ,environmental sciences ,scientific vocabularies ,cross-domain - Abstract
The Environmental and Earth sciences are faced with complex and dynamic challenges: they cannot be solved in isolation from each other or from other sciences, such as the social and health sciences. Researchers who tackle real world challenges must have data that are easy to use and understandable in a variety of contexts. An important element of understanding these data is the use of well-organised, community-accepted terminology for data. With the increasing uptake of the semantic web and the demand for open data, data descriptors of varying quality and technical maturity are proliferating (e.g. ESIP/RDA Earth, Space and Environmental Sciences Interest Group (ESES-IG), Semantic Resource Catalogue, 2021). These range from simple lists, through thesauri and taxonomies, to formalised ontologies. This proliferation can be extremely confusing for the practitioner (data creator or re-user), as there are no agreed criteria to support a selection decision. In addition, the variety of descriptors in the community stunts machine discovery. Elements such as community-endorsement and sustainability of terminology are essential to enable open scientific practice. Session 320 at the Virtual SciDataCon2021 presented seven experts with a range of approaches to effectively using heterogeneous environmental and earth science terms. The speakers discussed several approaches to the use of heterogeneous environmental and earth science terms, and they shared their learned experience of vocabulary implementation, the challenges they have encountered in real-world use, and their various solutions. Seven key points were highlighted in a final wrap-up of the session. After an introduction by Alison Specht (TERN, University of Queensland) on behalf of the organising team of Romain David, Margaret O'Brien, Shelley Stall and Lesley Wyborn), the speakers and their subjects were as follows: Marie Angélique Laporte (Alliance of Biodiversity International and CIAT, Switzerland), Vocabularies: How to link them and what they are-ontology flavour. Siddeswara Guru (TERN, Australia), Semantic challenges in Environmental and Earth vocabularies in Australia for an infrastructure serving a heterogeneous community. Anne-Sophie Archambeau (IRD/UMS PatriNat/ GBIF France), The long history of DarwinCore. Yvan le Bras (PNDB, MNHN, France), Vocabularies for a national biodiversity e-infrastructure. Wim Hugo (SAEON, South Africa, now at the Dutch national centre of expertise and repository for research data, DANS), Challenges and Opportunities - Semantic Interoperability and Developing Countries. Yann Le Franc (FAIRsFAIR), An overview of the FAIRsFAIR project and our work on FAIR Semantics. Barbara Magagna (Environment Agency Austria), Interoperability via the application of the I-ADOPT Framework. Shelley Stall (AGU), provided the session wrap-up., https://www.scidatacon.org/virtual-2021/sessions/320/
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- 2021
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16. EOSC-Pillar D5.6 FAIR Research Data Management Tool Set Update
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Candela, Leonardo, Frosini, Luca, Mangiacrapa, Francesco, Rouchon, Olivier, Le Franc, Yann, and Toulemonde, Baptiste
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EOSC ,FAIR data ,Open Science ,Research Data Management - Abstract
This document is an update of D5.1, a report accompanying the delivery of the bundle of service instance(s) resulting from T5.1 and T5.2 activities. It provides a short summary of the work, the list of services and how to access them as also described in D5.2. The tool set aims at offering solutions for Research Data Management promoting the implementation of FAIR principles and practices.
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- 2021
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17. Towards a semantic model for FDOs
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Mutschke, Peter, Le Franc, Yann, and Wittenburg, Peter
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FAIR digital object ,FDO ,semantic model ,research data ,semantics ,FAIR prinicples - Abstract
FAIR Digital Objects (FDOs) are especially needed when it comes to linking together heterogeneous data from different communities in order to advance cross-disciplinary research. However, it is still neither clear what the minimum set of attributes making a FDO is nor do we have a model for representing these attributes in a semantically unambiguous and machine-actionable way. The session will discuss requirements to be taken into account for future discussions on a semantic model for FDOs., GO FAIR Implementation Network, Go Inter, FDO Forum
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- 2021
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18. EOSC Co-creation funded project 074: Delivery of a proof of concept for terms4FAIRskills: Technical report
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Molloy, Laura, McQuilton, Peter, Le Franc, Yann, Hodson, Davies, Shanahan, van Gelder, Sansone, Whyte, and Ashley
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terminology development ,FAIR data ,skills development ,ontology development - Abstract
This report sets out the aims, activities and outputs of EOSC Co-creation funded project 074, 'Delivery of a proof of concept for terms4FAIRskills', which developed a proof of concept version of a terminology for describing the knowledge and skills for making and keeping data FAIR. This activity has been produced with the support of EOSCSecretariat.eu, which has received funding from the European Union's Horizon Programme call H2020-INFRAEOSC-2018-4, Grant Agreement number 831644.
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- 2021
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19. SEMAF: A Proposal for a Flexible Semantic Mapping Framework
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Broeder, Daan, Budroni, Paolo, Degl'Innocenti, Emiliano, Le Franc, Yann, Hugo, Wim, Jeffery, Keith, Weiland, Claus, Wittenburg, Peter, and Zwolf, Carlo Maria
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EOSC ,Open Science ,RDA ,FAIR principles ,research data infrastructure ,semantic interoperability ,semantic artefacts ,semantics ,GeneralLiterature_MISCELLANEOUS - Abstract
This report presents a study for aflexible framework to create, document and publish semanticmappings and cross-walks linking different semantic artefacts within a particular scientificcommunity and across scientific domains. These mappings and cross-walks should be FAIR, as proposed in the FAIR Semantics recommendations.The study draws on the broad expertise of the authors and 25 interviews conducted with community experts. A description fora proposed follow-up implementation project is part of the report.
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- 2021
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20. Inward Rectifier Potassium Channels
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Le Franc, Yann, primary
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- 2014
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21. EOSC-Pillar D5.2 FAIR Research Data Management Workbench Operation Report
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Candela, Leonardo, Frosini, Luca, Le Franc, Yann, Mangiacrapa, Francesco, and Cazenave, Nicolas
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EOSC-Pillar is developing and integrating a set of tools and services overall supporting the construction and maintenance of an aggregated data space implementing the FAIR principles: a Federated FAIR Data Space (F2DS). This deliverable documents the activities and results (e.g., indicators on integrated data providers, and datasets, indicators on datasets accesses) of the operation of the EOSC-Pillar toolset enacting the development of the EOSC-Pillar data space. Thefirst release of this typology of deliverable gives early indicators about the exploitation of the proposed services. The dataspace will be actually developed in the second period of the project.
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- 2021
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22. FAIR semantics and the NVS
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Kokkinaki, Alexandra, Moncoiffe, Gwenaelle, Le Franc, Yann, Kokkinaki, Alexandra, Moncoiffe, Gwenaelle, and Le Franc, Yann
- Abstract
The FAIR principles provide guidelines for the publication of digital resources such as datasets, code, workflows, and research objects aiming at making them Findable, Accessible, Interoperable, and Reusable(1). Amongst them, the I of the FAIR promotes interoperability and more specifically principle I2 suggests that metadata should use vocabularies that themselves follow the FAIR principles. Recently, FAIRsFAIR1 project officially published a first iteration of recommendations for making vocabularies FAIR (2). These recommendations include 17 general recommendations aligned with the different FAIR Principles and 10 Best Practice recommendations. The main objective of these recommendations is to provide a set of guidelines for creating a harmonised and interoperable semantic landscape easing the use and reuse of semantic artefacts from multiple different scientific domains.
- Published
- 2021
23. D2.5 FAIR Semantics Recommendations Second Iteration
- Author
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Hugo, Wim, Le Franc, Yann, Coen, Gerard, Parland-von Essen, Jessica, and Bonino, Luiz
- Subjects
EOSC ,FAIR Principles ,KOS ,Terminolgies ,Ontologies ,Semantic Interoperability ,Semantic Artefacts ,Interoperability ,Knowledge Organization Systems ,Vocabularies ,Semantics ,FAIR ,European Open Science Cloud - Abstract
This document is the second iteration of recommendations for making semantic artefacts FAIR. These recommendations result from initial discussions during a brainstorming workshop organised by FAIRsFAIR as a co-located event with the 14th RDA Plenary meeting in Helsinki. Based on the feedback received there, 17 preliminary recommendations related to one or more of the FAIR principles, and 10 best practice recommendations on semantic artefacts were documented. These recommendations were first published as Deliverable 2.2 at the beginning of 2020[1]. Following various dissemination and stakeholder engagement activities, including an evaluation workshop held in October 2020, this second iteration of recommendations and best practices are proposed. Deliverable 2.5 is a complete, reviewed and improved version of D2.2. D2.5 supersedes D2.2 [1] https://doi.org/10.5281/zenodo.3707984  
- Published
- 2020
- Full Text
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24. EOSC-Pillar First Annual Report
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Galeazzi, Fulvio, Le Franc, Yann, van Wezel, Jos, Hönegger, Lisa, Beckmann, Volker, Carrillo, Rob, Van Nieuwerburgh, Inge, Tanlongo, Federica, Geistberger, Julia Sophie, Cazenave, Nicolas, Huynh, Frederic, Hashibon, Adham, Drago, Federico, and MacDonald, Kirsty
- Subjects
EOSC ,FAIR data ,Open Science ,FAIR principles ,Research - Abstract
Coordinating central-western Europe’s plug-in to the European Open Science Cloud is a challenge. But through the collaboration of key players, the foundations have been established through EOSC-Pillar within its first year. Read about the main updates from the EOSC-Pillar project: EOSC-Pillar, One Year On The National Initiatives Survey and its Importance Austria, Belgium, France, Germany, and Italy - Working towards an EOSC Federated FAIR Data Space - A Space to Federate them all The Project in Numbers Look into the Future
- Published
- 2020
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25. Report on the FAIR Semantics workshop to discuss ontology design good practices and evaluate the first recommendations and the roadmap (M2.6)
- Author
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Hugo, Wim, Le Franc, Yann, Coen, Gerard, Bonino, Luiz, and Parland-von Essen, Jessica
- Subjects
EOSC ,Ontologies ,Research Data Management ,Semantic Interoperability ,Interoperability ,Semantics ,Vocabularies ,FAIR - Abstract
The goal of the Task 2.2 of the FAIRsFAIR project is to co-create both recommendations for making semantic artefacts FAIR, and a set of agreed best practices to follow together with the Semantics community at large. The term "semantic artefact" is being used here as a catchall term covering ontologies, KOS (Knowledge Organization Systems), and any other similar ‘tools’ which allow researchers and machines to describe, locate, access, and understand (meta)data. This could also include data vocabularies, code, code lists, and standards. Our goal for this workshop, arranged virtually on 15 October 2020, was to go through the recommendations one by one and discuss feedback and proposed changes in advance of the seconditeration (1Set of FAIR Semantics:https://doi.org/10.5281/zenodo.3707985).
- Published
- 2020
26. EOSC-Pillar D5.1 FAIR Research Data Management tool set
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Cazenave, Nicolas, Candela, Leonardo, Berberi, Lisana, van Wezel, Jos, Hashibon, Adham, and Le Franc, Yann
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EOSC ,FAIR data ,FAIR principles ,RDM ,Research Data Management - Abstract
This document is accompanying the delivery of the bundle of service instance(s) that are the output of T5.1 and T5.2 activities. It provides a short summary of the work and the list of services and how to access them. The tool-set aims atoffering solutions for Research Data Management promoting the implementation of FAIR principles and practices. This tool-set is updated every 6 months after the initial release. A major release is planned in June 2021 (PM24).
- Published
- 2020
- Full Text
- View/download PDF
27. EOSC-Pillar D5.3 Training Plan
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Lazzeri, Emma, Pavone, Gina, Carrillo, Rob, Le Franc, Yann, Tanlongo, Federica, and Galeazzi, Fulvio
- Subjects
EOSC ,Open Science - Abstract
EOSC-Pillar is one of the projects resulting from the INFRAEOSC-05 call “Support to the EOSC Governance”, having as the main scope to “set up an operational framework for supporting the overall governance of the EOSC, including the coordination between relevant national initiatives.”. The other projects from the same call, sharing common activities and objectives are FAIRsFAIR, EOSC-Secretariat, EOSC-Synergy, EOSC-Nordic, NI4OS Europe, ExPaNDS. To foster collaboration between these projects, several Task Forces have been created to work on common topics: Service Onboarding, Landscaping, Dissemination and Events, National Policies and Governance, FAIR data and infrastructures, and Training and Skills. To support training activities EOSC-Pillar can build, in addition to a dedicated inter-project task force, also upon the results achieved by other initiatives in Open Science training thanks to its network of Partners that are connected and involved in such other initiatives and projects as the Community of practice of training coordinators, RDA groups on training, GoTRAIN, OpenAIRE, FOSTER. This document describes the initial activity plan for Task 5.4 (“Training modules on FAIR-oriented research data management tools and solutions”) as well as the methodology, the selected specific training themes and the type of planned event. The plan is drafted in accordance with EOSC-Pillar objectives 03and 04.
- Published
- 2020
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28. D2.2 FAIR Semantics: First recommendations
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Le Franc, Yann, Parland-von Essen, Jessica, Bonino, Luiz, Lehväslaiho, Heikki, Coen, Gerard, Staiger, Christine, Devaraju, Anusuriya, and Siebes, Ronald
- Subjects
0303 health sciences ,KOS ,Terminolgies ,0211 other engineering and technologies ,Semantic Interoperability ,02 engineering and technology ,Interoperability ,Knowledge Organization Systems ,Vocabularies ,Semantics ,03 medical and health sciences ,EOSC ,FAIR Principles ,Ontologies ,Semantic Artefacts ,030304 developmental biology ,021101 geological & geomatics engineering ,FAIR - Abstract
This document is the first iteration of recommendations for making semantic artefact FAIR. These recommendations result from initial discussions during a brainstorming workshop organised by FAIRsFAIR as co-located event with the 14th RDA Plenary meeting in Helsinki. We are proposing 17 preliminary recommendations related to one or more of the FAIR principles and 10 best practice recommendations to improve the global FAIRness of semantic artefacts. These initial recommendations should not be considered as a gold standard but rather as a basis for discussion with the various stakeholders of the semantic community. Deliverable 2.5 is a complete, reviewed and improved version of D2.2. D2.5 supersedes D2.2. PLEASE SEE THIS DOCUMENT:https://doi.org/10.5281/zenodo.4314320 
- Published
- 2020
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29. D2.3 Set of FAIR data repositories features
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Behnke, Claudia, Bonino, Luiz, Coen, Gerard, Le Franc, Yann, Parland-von Essen, Jessica, Riungu-Kalliosaari, Leah, Staiger, Christine, Claudia Engelhardt, and Gabin Kayumbi
- Subjects
data ,metadata ,research data management ,Repositories ,FAIR principlines ,digital research infrastuctures ,semantic interoperability - Abstract
This report presents the results of the first year of Task 2.3from the FAIRsFAIR project. It givesguidelines to enable features for repositories which allow them not only to host FAIR digitalobjects, but also to be FAIR themselves. The recommendations were collected in the workshop“Building the data landscape of the future: FAIR Semantics and FAIR Repositories” (22 October2019, Espoo Finland) that was hosted by this task together with the FAIRsFAIR task 2.2. It derivedinput from more than 70 participants from 6 communities: the European Life SciencesInfrastructure for Biological Information (ELIXIR), the European Incoherent Scatter ScientificAssociation (EISCAT), the Social Sciences and Humanities (SSH), the Integrated CarbonObservation System (ICOS), the European network of Long-Term Ecosystem Research sites(eLTER), and the Data Publisher for Earth & Environmental Science ( Pangea). The background ofparticipants lied in infrastructures, research and libraries.
- Published
- 2020
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30. NineML: the network interchange for neuroscience modeling language
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Muller Eilif, Morrison Abigail, Lo Chung-Chan, Le Franc Yann, Kriener Birgit, Hines Mike, Hill Sean, Plesser Hans, Gorchetchnikov Anatoli, Gleeson Padraig, Djurfeldt Mikael, De Schutter Erik, Davison Andrew, Cornelis Hugo, Clewley Robert, Cannon Robert, Raikov Ivan, Ray Subhasis, Schwabe Lars, and Szatmary Botond
- Subjects
Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurophysiology and neuropsychology ,QP351-495 - Published
- 2011
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31. D2.1 Report on FAIR requirements for persistence and interoperability 2019
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Lehväslaiho, Heikki, Parland-von Essen, Jessica, Behnke, Claudia, Laine, Heidi, Riungu-Kalliosaari, Leah, Le Franc, Yann, and Staiger, Christine
- Subjects
FAIR data ,FAIR principles ,ESFRIs ,metadata ,semantic interoperability ,persistent identifiers ,research data ,semantic artefacts ,digital research infrastructures ,ontologies ,research data management - Abstract
This document is the first iteration of three annual reports on the state of FAIR in European scientific data by the FAIRsFAIR project. The interpretation of the FAIR data principles and their implications for services are now under intense scrutiny across Europe with multiple possible outcomes. The report is based on studies of public information, especially EOSC infrastructure efforts, and on limited surveying and interviews. The focus has been on understanding the usage of persistent identifiers and semantic interoperability. This study highlights the rapidity of change in technical solutions and wide variation across scientific domains in the uptake. More efforts are needed to guide researchers in best practices. This report is the first of three of a kind to be produced by the FAIRsFAIR project. This deliverable reviews and documents commonalities and possible gaps regarding semantic interoperability, and the use of metadata and persistent identifiers across infrastructures. Since many landscaping, specification and “FAIRification” activities are ongoing in the EOSC projects and elsewhere, much new information will be added to the later versions. The authors hope to get feedback to enrich and adjust the observations and conclusions made in this document. FAIR Digital Objects are central to the realisation of FAIR data principles. These objects need to be accompanied by Persistent Identifiers (PIDs) and rich metadata as they sit in a wider FAIR ecosystem comprising of services and infrastructures for FAIR, including identifiers, standards and repositories. The details of the FAIR principles for data, the implementation and implications for services are neither defined nor settled yet. The first suggestions for a more specific definition of a FAIR Digital Object has only recently been presented and will be further tested within the FAIRsFAIR project. Implications of the FAIR data principles for services, repositories and software are being investigated in other FAIRsFAIR tasks. Thus, this report focuses on semantic interoperability as it is a prerequisite for linking and finding data, as well as on the identifiers, which can offer persistence but also need context sensitive solutions. We use the term semantic artefact to overcome the terminological diversity that ironically is a challenge in discussions on this important element of the architecture we need in order to enable semantic interoperability within a FAIR Ecosystem. Development and implementation of the FAIR data principles should be driven by researcher needs to achieve wide penetration and the potentially significant benefits of FAIR data. The differences within research domains are often bigger than between them. Enforcing standards comes with the risk of making gaps grow between mature and emerging research domains. Community adoption and trust are decisive factors. Enabling services for publishing crosswalks, mappings and semantic application profiles are needed. All these should be registered and published in machine readable formats. A challenge with PID and data type registries is having them to promote reuse of data rather than bulk creation of PIDs. To support interoperability, they should be considered semantic artefacts, curated and reused. The aim should be born-FAIR data, which requires integrated and user friendly solutions throughout the research process and data lifecycle. By publishing application profiles, preferably in a common registry and in a machine readable format, reuse of semantic artefacts can be promoted, thereby enabling interoperability. Also curated registries like the EOSC Hub, FAIRsharing and re3data.org are important resources for enabling implementation of the FAIR data principles. We welcome comments and feedback. It is possible to comment here: https://docs.google.com/document/d/1LPMpuDSyIhzYT6S3bG2KPecdDXn-af4bJxzX2r_xLIs/edit?usp=sharing, {"references":["https://doi.org/10.5281/zenodo.3518922"]}
- Published
- 2019
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32. EOSC Pillar - Understanding the complex national and transnational environment
- Author
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Le Franc, Yann
- Subjects
EOSC ,EOSC Pillar - Abstract
Workshop abstract Are you establishing and integrating EOSC activities within your country? Do you need more support and opportunities to swap experiences on how embark on an EOSC action plan and how to reach out effectively to research communities about EOSC services? EOSC is gathering a huge momentum, and how this new research support network is established at national level is now at a critical stage, aspects of which are ongoing at a variety of implementation levels in some member states. While activities are different in each country, they could benefit from and be supported by alignment and good practice exchange. This workshop initiated by OpenAIRE, EOSC hub, and RDA-Europe will explore, with the support of the recently funded EOSCsecretariat.eu project, two areas of implementing EOSC at national level: Establishing national action plans and working with research groups and libraries to raise awareness about EOSC. In particular the workshop will touch on how to set up national action plans, set priorities especially at governance level, how to establish coordinated commitment from key stakeholders and to develop value added support and commitments for local infrastructure within the EOSC vision. Another aspect will be that of serving local research groups and how to target specific EOSC services to them, which is a challenging part of EOSC implementation. This session will be structured in a way that will showcase regional examples of EOSC implementation and good practice. The breakout sessions will be grouped at a regional level in order to identify common threads. This workshop will also provide a perfect setting to meet and network with national counterparts and help prepare and pave the way to set up EOSC and a better understanding of how EOSC works at the national level.
- Published
- 2019
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33. D3.5: Business Plan for Training Activities
- Author
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Grootveld, Marjan (DANS), Le Franc, Yann (ESDF), Garavelli, Sara (TRUST-IT), and De Witt, Shaun (CCFE)
- Subjects
Training, Business, CDI, Markets, Training Portfolio - Abstract
This document outlines a business plan for training activities beyond the lifetime of the EUDAT2020 project. We review the existing training components, together with key partner projects and organisations. An analysis of potential markets for this activity is presented. Based on experience gained within the current project, detailed costings for future events in several formats are presented. Finally, we look at possible future types of event which could be organized and how to maintain training experience outside of the existing project.
- Published
- 2018
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34. D5.3: Report on Status and Progress of Service Building, Year 3
- Author
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Van De Sanden, Mark (SURFsara), Ariyo, Christopher (CSC), Cacciari, Claudio (CINECA), Kirkham,Tom (STFC), Dima, Emanuel (EKUT), Apweiler, Sander (JSC), Widmann, Heinrich (DKRZ), Cortes, Toni (BSC), Elbers, Willem (CLARIN), Weigel, Tobias (DKRZ), Van Horik, René (DANS), Vathsavayi, Sri Harsha (CSC), Rajapakse, Asela (MPI-M), Kallio, Aleksi (CSC), and Le Franc, Yann (ESDF)
- Subjects
B2 services suite, Data Repository service, B2SHARE, Personal Cloud Storage, B2DROP, Data Discovery, B2FIND, Federated AAI, B2ACCESS, Data Management Policies, BSAFE, Persistent Identifiers, B2HANDLE, Data Curation, Data Staging, B2STAGE, Semantic Annotation, B2NOTE, Data Policy Manager, Data Type Registry, Generic Execution Framework, Data Distribution Service, Data Subscription Service, User Documentation, Training Materials, Service Building Requirements, Roadmap, CDI Architecture, Service Reliability, Data Durability - Abstract
This document is the third and final status and progress report on the service building activities conducted within the EUDAT2020 project. It provides an overview of the highlights and main achievements. The service building activities concentrated in the final year on further progressing in the service developments, realizing the defined CDI architecture, the completion of two new production services. The User Documentation and Training Materials team provided continuous effort in developing and maintaining new and existing documentation and training material. While the activities in the CDI Architecture and Service Rolling Plan concentrated on addressing existing and new requirements, maintaining the service building roadmap and participate in the business offering task on defining criteria for service available, reliability and data durability. Also, an outlook is provided on how service development is sustained after the EUDAT2020 project has finished.
- Published
- 2018
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35. D8.3: Report on Design Model and Definition of Data Directives
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Le Franc, Yann, Cortes, Toni, Rajapakse, Asela, Chernov, Alexandr, Queralt, Anna, Dima, Emanuel, Pivan, Xavier, Pagé, Christian, and Ezelin, Johann
- Subjects
Data Life Cycle, provenance, directives, rule languages, rule engines - Abstract
Based on the work described in D8.1 and D8.2, we developed initial prototypes for modeling Data Life Cycles and directives. In this document, we are describing both the processes and the results of this initial implementation. We will discuss the issues we faced in developing these prototypes and the technical choices we made. This deliverable provides an overview of the current status of the work. This work has been used as a basis for concrete implementations of community use-cases, described in D8.6.
- Published
- 2018
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36. D5.2: Report on Service Building Status and Progress Year 2
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Van De Sanden, Mark (SURFsara), Mucci, Roberto (CINECA), Van Horik, René (DANS), Weigel, Tobias (DKRZ), Elbers, Willem (CLARIN), Cortes, Toni (BSC), Rajapakse, Asela (MPI-M), Widmann, Heinrich (DKRZ), Von St. Vieth, Benedikt (JSC), Dima, Emanuel (EKUT), Kirkham, Tom (STFC), Cacciari, Claudio (CINECA), Ariyo, Christopher (CSC), Kallio, Aleksi (CSC), and Le Franc, Yann (ESDF)
- Subjects
B2 services suite, Data Repository service, B2SHARE, Personal Cloud Storage, B2DROP, Data Discovery, B2FIND, Federated AAI, B2ACCESS, Data Management Policies, BSAFE, Persistent Identifiers, B2HANDLE, Data Curation, Data Staging, B2STAGE, Semantic Annotation, B2NOTE, Data Policy Manager, Data Type Registry, Generic Execution Framework, User Documentation, Training Materials, Service Building Requirements, Roadmap, Technology Readiness Level - Abstract
This document provides an overview of the service building activities conducted in the second year of the EUDAT 2020 project. The service building activities in the second year concentrated on further progressing on the consolidation and integration of the existing services, on the implementation the Collaborative Data Infrastructure (or CDI) architecture with support for metadata and a HTTP API, and on addressing requirements within the service building requirements procedure established in the first year. Further, the service building activities have been supplemented by an approach to define and use Technology Readiness Levels (TRL) as used by the European Commission within the EUDAT CDI and services. An initial assessment has been made to define TLR levels on current EUDAT services, either in production or in development.
- Published
- 2017
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37. EUDAT D8.4: Initial Service Prototypes
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Chernov, Alexandr, Dima, Emanuel, Le Franc, Yann, Goldfarb, Doron, Pagé, Christian, Pivan, Xavier, and Rajapakse, Asela
- Subjects
EUDAT, Deliverable, Generic Execution Framework, semantic services, requirements, technologies, modelling,data life cycle, directives, dynamic data - Abstract
This document presents the evolution and current status of the proof of concept prototypes for the Generic Execution Framework (GEF) extensions and semantic services. These developments are grounded in the work performed by other WP8 tasks: analysis of requirements and technologies and modelling of data life cycle, directives and dynamic data.
- Published
- 2017
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38. D8.2: Report on Technology Watch
- Author
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Le Franc, Yann, Schentz, Herbert, Rajapakse, Asela, Dima, Emanuel, Goldfarb, Doron, Wohner, Christoph, Queralt, Anna, Miranda, Alberto, and Cortes, Toni
- Subjects
Data Life Cycle models, Provenance, Dynamic Data, Graph stores, Rule Engines, Directives, Rule Languages - Abstract
The aim of this deliverable is to present a summary of the different technological approaches that EUDAT investigated to support the design of the prototype services and data models identified in D8.1 and implemented in task 8.2 (D8.3, data models) and task 8.4 (D8.4, service design and prototypes). This document presents the two distinct but related topics of investigation: the existing data models that could support the design of DLC models and a directive language, as well as the existing technologies to support the usage of graph-based data, workflow descriptions, directives, semantic resources and dynamic data. These descriptions are not meant to be exhaustive but reflect the results of our current state of knowledge.
- Published
- 2017
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39. D4.7: Activity Report, year 2
- Author
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Broeder, Daan, Zastrow, Thomas, Le Franc, Yann, Hanahoe, Hilary, and Piagentini, Caterina
- Abstract
Deliverable D4.7 reports on the progress and achievements of WP4 since month 12 of EUDAT2020 with respect to task 4.3 “Community Engagement” and task 4.4 “External Research & Standard Organizations Liaison”. It describes the progress with the EUDAT working group process, the interaction with the EUDAT Data Pilots. In addition, EUDAT’s contacts with the RDA and the ESFRI clusters are described.
- Published
- 2017
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40. EUDAT D8.1: Report of Requirements
- Author
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Le Franc, Yann, Queralt, Anna, Miranda, Alberto, Cortes, Toni, Budich, Reinhard, Pagé, Christian, Moine, Marie-Pierre, Schentz, Herbert, Peterseil, Johannes, Fares, Massimo, Dima, Emanuel, and Rajapakse, Asela
- Subjects
EUDAT, Deliverable, Data Life Cycle, Service requirements, Provenance, Dynamic Data, Semantic Web, Workflow, Directives, Registries - Abstract
The aim of this deliverable is to lay out the ground for future work in WP8 by providing a clear list of additional services that should be developed as well as an initial list of high-level requirements. In this document, we are presenting general DLC descriptions for core EUDAT communities and for individual researcher and citizen scientists. These DLC descriptions have been derived from community specific user scenarios and were aligned using an agreed upon list of key activities involved in DLCs. Within these descriptions, we included the planned integration of EUDAT services in the different DLC steps extracted from current and future Uptake Plans (WP4) to dissociate as much as possible existing services, requirements and new services. These descriptions provide the first attempt to associate EUDAT services to identified DLC activities and were used to list the specific needs. From these needs, we were able to identify new services and provide a list of high-level requirements that will be used to further design and prototype the new services.
- Published
- 2016
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41. EUDAT D4.4: Activity Report, year 1
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Broeder, Daan, Wittenburg, Peter, Stehouwer, Herman, Le Franc, Yann, and Hanahoe, Hilary
- Subjects
EUDAT, Deliverable, Community Engagement, EUDAT User Forum, Call for Collaboration, RDA, ESFRI - Abstract
Deliverable D4.4 reports on the progress and achievements of WP4 in the first 12 months of EUDAT2020 with respect to task 4.3 “Community Engagement” and task 4.4 “External Research & Standard Organizations Liaison”. It describes the start of the EUDAT working group process for this phase of the project, the first Call for Collaboration and the first EUDAT User Forum run by this second phase of EUDAT. In addition, EUDAT’s contacts with the RDA and the ESFRI clusters are described.
- Published
- 2016
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42. EUDAT D5.1: Report on Service Building Status and Progress, year 1
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Van De Sanden, Mark, Håkansson, Carl Johan, Cacciari, Claudio, Packer, Alison, Dima, Emanuel, Von St. Vieth, Benedikt, Thiemann, Hannes, Cortes, Toni, Elbers, Willem, Weigel, Tobias, Mucci, Roberto, Le Franc, Yann, and Staiger, Christine
- Subjects
EUDAT, Deliverable, CDI Layered Architecture, CDI Data Model, B2 services suite, Data Repository service, B2SHARE, Personal Cloud Storage, B2DROP, Data Discovery, B2FIND, Federated AAI, B2ACCESS, Data Management Policies, BSAFE, Persistent Identifiers, B2HANDLE, Data Staging, B2STAGE, Semantic Annotation, B2NOTE, Data Policy Manager, Data Type Registry, User Documentation, Training Materials, Service Building Requirements, Roadmap - Abstract
This document provides a comprehensive overview of the activities related to building data management services and of the architectural discussions about the EUDAT Common Data Infrastructure (CDI) that were conducted during the first year of the EUDAT2020 project. The service building activities concentrated on the consolidation and integration of the existing EUDAT services and on the uptake of new community requirements initiated from the community uptake plans and data pilots or as a result from Joint Result Activities (JRA). The discussions about the architecture of the EUDAT CDI focused on the definition of the data model used, the layered architecture and the support for metadata within the CDI. In addition, a service building roadmap was defined to facilitate communication between EUDAT and the communities and project enablers about new releases of the services and supported functionalities – the roadmap is updated every half year. Furthermore, a procedure for identifying the requirements for new or proposed services was established – this will make it easier to adapt the EUDAT CDI network to any new requirements in an agile way.
- Published
- 2016
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43. Neuroinformatics for efficient data management and reproducibility in electrophysiology
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Sobolev, Andrey, Stoewer, Adrian, Kellner, Christian J., Le Franc, Yann, Grewe, Jan, and Wachtler, Thomas
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Computational Neuroscience ,Bernstein Conference - Published
- 2014
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44. Mobile metadata: bringing Neuroinformatics tools to the bench
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Wachtler Thomas, Mylyanyk Ivan, Gonzalez Daniel, Le Franc Yann, Grewe Jan, Jezek Petr, and Mouček Roman
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Metadata ,Computer science ,Biomedical Engineering ,Neuroscience (miscellaneous) ,Neuroinformatics ,Data science ,Computer Science Applications - Published
- 2014
- Full Text
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45. Describing neurophysiology data and metadata with OEN, the Ontology for Experimental Neurophysiology
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Tripathy Shreejoy, Mouček Roman, Bandrowski Anita, Le Franc Yann, Grewe Jan, Brůha Petr, Papež Václav, and Wachtler Thomas
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Metadata ,Information retrieval ,Computer science ,Biomedical Engineering ,Neuroscience (miscellaneous) ,Neurophysiology ,Ontology (information science) ,Computer Science Applications - Published
- 2014
46. Sensory and nociceptive information transfert through the dorsal horn network of the spinal cord
- Author
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Le Franc, Yann, Physiopathologie des Reseaux Neuronaux Medullaires, Université Bordeaux Segalen - Bordeaux 2-Institut National de la Santé et de la Recherche Médicale (INSERM), Université Victor Segalen - Bordeaux II, Gwendal Le Masson(gwendal.lemasson@inserm.fr), and Le Franc, Yann
- Subjects
Spinal cord ,Neurosciences Computationnelles ,Computational Neurosciences ,Nociceptors ,Pain ,Nocicepteurs ,information transmission ,Moelle épinière ,Transmission nerveuse ,Traitement du signal ,méthode de réseaux hybrides ,Douleur ,dynamic clamp ,Information processing ,[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,Neuronal networks (physiology) ,[SDV.NEU] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,Réseaux neuronaux (physiologie) - Abstract
First relay of peripheral sensory and nociceptive information, the dorsal horn network of the spinal cord is a dynamic integrator, rather than a simple relay. The aim of this work is to caracterize input/output transformation and to assess the effect of network parameters as cellular, synaptic and connectivity properties. We used a combined theoretical and experimental approach through the development of a new experimental hybrid platform, based on the NEURON simulator. We developped a realistic network model of the dorsal horn and theoretical quantification tools from signal processing algorithm and information theory. We demonstrated the importance of intrinsic neuronal properties as well as inhibitory control for the information transfer. This work can lead to a novel approach of virtual pharmacology for the exploration of new pain treatment., Premier relais des informations sensorielles et nociceptives périphériques, la moelle épinière est le siège de traitements dynamiques complexes. L'objectif de ce travail est de caractériser la transformation subie par le signal (sa fonction de transfert) et de quantifier l'impact des différents paramètres du réseau. Pour cela, nous avons utilisé une approche multidisciplinaire mêlant théorie et expérimentation au travers du développement d'une nouvelle plateforme d'expérimentation hybride, basée sur le logiciel NEURON. Nous avons construit un modèle réaliste du réseau de la corne dorsale et développé des outils théoriques de quantification du signal et de sa transformation, provenant de la théorie de l'information. Nous avons pu ainsi pu mettre en évidence l'importance des propriétés régénératives cellulaires ainsi que du contrôle inhibiteur sur le transfert de l'information nociceptive. Nous aboutissons ainsi à une approche novatrice de pharmacologie virtuelle pour l'étude de la douleur.
- Published
- 2004
47. Studying connectivity and brain development with combinatorial Brainbow labels
- Author
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Morin Xavier, Chedotal Alain, Supatto Willy, Mahou Pierre, Livet Jean, Fouquet Stephane, Loulier Karine, Ieng Sio Hoi, Beaurepaire Emmanuel, Matho Katherine, Benosman Ryad, Barry Raphaelle, and Le Franc Yann
- Subjects
Brain development ,medicine.anatomical_structure ,Computer science ,Biomedical Engineering ,Neuroscience (miscellaneous) ,medicine ,Brainbow ,Neuroscience ,Computer Science Applications - Published
- 2013
48. The Ontology for Experimental Neurophysiology: a first step toward semantic annotations of neurophysiology data and metadata
- Author
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Brůha Petr, Bandrowski Anita, Wachtler Thomas, Le Franc Yann, Mouček Roman, Papež Václav, Tripathy Shreejoy, and Grewe Jan
- Subjects
Information retrieval ,business.industry ,Computer science ,Biomedical Engineering ,Neuroscience (miscellaneous) ,Ontology (information science) ,Neurophysiology ,computer.software_genre ,Computer Science Applications ,Metadata ,Artificial intelligence ,business ,computer ,Natural language processing - Published
- 2013
- Full Text
- View/download PDF
49. Framework for Collection of Electrophysiology Data
- Author
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Ježek, Petr, primary, Moucek, Roman, primary, Krauz, Jakub, primary, Hošek, Jaroslav, primary, Le Franc, Yann, primary, Wachtler, Thomas, primary, and Grewe, Jan, primary
- Published
- 2015
- Full Text
- View/download PDF
50. Multiplex Cell and Lineage Tracking with Combinatorial Labels
- Author
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Loulier, Karine, primary, Barry, Raphaëlle, additional, Mahou, Pierre, additional, Le Franc, Yann, additional, Supatto, Willy, additional, Matho, Katherine S., additional, Ieng, Siohoi, additional, Fouquet, Stéphane, additional, Dupin, Elisabeth, additional, Benosman, Ryad, additional, Chédotal, Alain, additional, Beaurepaire, Emmanuel, additional, Morin, Xavier, additional, and Livet, Jean, additional
- Published
- 2014
- Full Text
- View/download PDF
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