Conservation planners often rely on heuristic indices when challenged with prioritizing potential projects under a constrained budget. This paper presents a comparative analysis of several prioritization indices (PIs) of culvert fish passage barriers, which can contribute to declines in anadromous fish populations. A federal injunction requires Washington state to restore 90% of habitat blocked by state‐owned culverts by 2030, prompting the development of numerous PIs, by various entities (i.e., counties, cities) within the injunction area. Our comparative analysis of PIs within the injunction Case Area investigates their ability to distinguish between barriers, their transferability in terms of scoring metrics, how scoring weights differ, and the preferences implied thereby. We document the use of six distinct PI methods by 10 entities and find that some PIs used many shared metrics, whereas others used a high percentage of unique metrics that would be difficult to replicate outside the entity's jurisdiction. Although habitat potential, habitat quantity, and connectivity were considered across all PIs, we found a high level of variation in terms of the metric weights. Our methods can be employed in other geographies or for other restoration PI planning efforts, and our results may facilitate the development and refinement of future PIs. [ABSTRACT FROM AUTHOR]