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This article is a Commentary on Guilbeault‐Mayers & Laliberté (2024), 243: 636–647. [ABSTRACT FROM AUTHOR]

Summary: Soil phosphorus (P) is a growth‐limiting nutrient in tropical ecosystems, driving diverse P‐acquisition strategies among plants. Particularly, mining for inorganic P through phosphomonoesterase (PME) activity is essential, given the substantial proportion of organic P in soils. Yet, the relationship between PME activity and other nutrient‐acquisition root traits remains unclear.We measured root PME activity and commonly measured root traits, including root diameter, specific root length (SRL), root tissue density (RTD), and nitrogen concentration ([N]) in 18 co‐occurring species across soils with varying P availability to better understand trees response to P supply.Root [N] and RTD were inversely related, and that axis was not clearly related to soil P supply. Both traits, however, correlated positively and negatively with PME activity, which responded strongly to P supply. Conversely, root diameter was inversely related to SRL, but this axis was not related to P supply.This pattern suggests that limiting similarity influenced variation along the diameter–SRL axis, explaining local trait diversity. Meanwhile, variation along the root [N]–RTD axis might best reflect environmental filtering. Overall, P availability indicator traits such as PME activity and root hairs only tended to be associated with these axes, highlighting limitations of these axes in describing convergent adaptations at local sites. See also the Commentary on this article by Dallstream & Soper, 243: 509–512. [ABSTRACT FROM AUTHOR]

Questions: Control of invasive species and seed addition are key steps in grassland restoration. Nevertheless, selecting seed mixes and seed quantities are hard tasks in restoration projects. An interesting idea is to design seed mixes using functional traits and create a community based on limiting similarity to overlap and outcompete the invader. We aimed to test the effect of two sown communities (one created to overlap the invader niche) and three seed sowing densities to reduce the performance of the invasive grass Eragrostis plana. Location: Greenhouse experiment in the Campos Sulinos grasslands region, Southern Brazil. Methods: We created a bifactorial experiment. The first factor was the sown community, each composed of nine native grasses but with different proportions: (1) Limiting, based on limiting similarity, and (2) Balanced, where all species were sown at the same seed weight. We used leaf functional traits (Specific leaf area, leaf area, leaf dry matter content) to design the Limiting community. The second factor was the seed density of native species, sowing twice (1) 1 g/m2, (2) 2 g/m2, and (3) 4 g/m2 (i.e., total density was 2, 4, and 8 g/m2). E. plana was sown once at 0.5 g/m2. Above‐ground and below‐ground biomass of all species were collected after nine months to assess the treatment effects. Results: Biomass production of the invasive species was lower when sown with native species. Nevertheless, both sown communities did not differently affect the invasive biomass production. Higher seed density of native species resulted in lower invasive above‐ground biomass, but not below‐ground biomass. Three native species did not germinate, consequently, the established communities were quite different from those designed. Conclusions: The low species germination limited our discussion about the use of limiting similarity to design seed mixes. High seed sowing density is a better approach when defining sowing strategies to compete with invasive grasses. [ABSTRACT FROM AUTHOR]

How communities of living organisms assemble has long been a central question in ecology. The impact of habitat filtering and limiting similarity on plant community structures is well known, as both processes are influenced by individual responses to environmental fluctuations. Yet, the precise identifications and quantifications of the potential abiotic and biotic factors that shape community structures at a fine scale remains a challenge. Here, we applied null model approaches to assess the importance of habitat filtering and limiting similarity at two spatial scales. We used 63 natural vegetation plots, each measuring 5 × 5 m, with three nested subplots measuring 1 × 1 m, from the 2021 field survey, to examine the alpha diversity as well as beta diversity of plots and subplots. Linear mixed‐effects models were employed to determine the impact of environmental variables on assembly rules. Our results demonstrate that habitat filtering is the dominant assembly rules at both the plot and subplot levels, although limiting similarity assumes stronger at the subplot level. Plot‐level limiting similarity exhibited a positive association with fine‐scale partitioning, suggesting that trait divergence originated from a combination of limiting similarity and spatial partitioning. Our findings also reveal that the community assembly varies more strongly with the mean annual temperature gradient than the mean annual precipitation. This investigation provides a pertinent illustration of non‐random assembly rules from spatial scale and environmental factors in plant communities in the loess hilly region. It underscores the critical influence of spatial and environmental constraints in understanding the assembly of plant communities. [ABSTRACT FROM AUTHOR]

Plant–plant interactions, often studied in the context of plant traits, are considered crucial assembly mechanisms for plant communities and offer insights into how neighbours affect growth. Three key questions regarding these interactions have theoretical importance but limited empirical support: (1) does similarity in plant traits enhance competitive interactions among species, (2) is the "competitive environment" determined through plant traits of the resident species, and (3) do greater species diversity and niche use result in increased competition among co‐occurring species. Here we use a simple experimental design to directly test these foundational questions.In a mesocosm experiment using native grassland fragments, we investigated our questions simultaneously by manipulating trait relationships among resident and colonizing plants. To assess the net impact of neighbours on plant growth, we measured the degree of suppression experienced by focal plants compared to growth in the absence of neighbours. We further tested whether trait‐function relationships are context‐dependent by modifying available resources.Contrary to the limiting similarity hypothesis, we found that reduced overall dissimilarity mitigated neighbour‐induced growth suppression, with more negative effects occurring among dissimilar neighbours. The influence of trait dissimilarity depended on nutrient context and was stronger under increased resource availability. We found little support for the idea that specific plant traits are "functional" in creating competitive environments: no community traits (community weighted means) were associated with net neighbour effects. In contrast, resource supply significantly affected species interactions, with increased resources exacerbating negative neighbour effects on plant growth.We found that plant trait dissimilarity does function in competition but is contingent on resource context. However, trait values were not inherently competitive: traits may have physiological functions but did not function in focal plants' competitive response. We provide some of the limited data directly testing the core mechanisms of community assembly. We encourage such direct experimental tests as they are essential to building an understanding of ecological processes. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

Aim: Understanding the patterns and drivers of biodiversity across space and time is commonly based on species diversity, which may ignore species' functional role and evolutionary history and result in an incomplete understanding of community assembly. It is suggested that integrating species, functional, and phylogenetic diversity could provide a more holistic assessment of community assembly in natural ecosystems. This study aimed to explore the elevational patterns and environmental drivers of multiple facets of fish diversity and community structure in a subtropical river during the wet and dry seasons. Location: The Chishui River basin, China. Methods: We investigated the responses of fish species richness, functional richness, and phylogenetic diversity to elevation in different seasons. Moreover, we compared functional dispersion and mean pairwise distance with those obtained from null models to infer assembly mechanisms shaping community structure. Additionally, we examined the environmental drivers (e.g. water chemistry, temperature, and river size) of fish diversity and community structure. Results: Fish species richness, functional richness, and phylogenetic diversity showed a negative relationship with elevation in the Chishui River basin. Fish communities tended to be on average functionally random but phylogenetically clustered. Furthermore, phylogenetic structure exhibited a decreasing pattern along the elevational gradient. Despite no significant seasonal changes for fish diversity (except for phylogenetic diversity), fish communities became more phylogenetically overdispersed and clustered at low and high elevations in the dry season. Additionally, the responses of fish diversity and community structure to environmental variables were not synchronous. Conclusions: At the basin scale, environmental filtering was prevalent in shaping fish phylogenetic structure, whereas stochasticity was likely more important for functional structure. Moreover, the ecological mechanisms shaping individual fish communities switched from limiting similarity to environmental filtering as elevation increased, and the underlying forces at two ends of the elevational gradient became more prominent in the dry season. [ABSTRACT FROM AUTHOR]

Abstract How communities of living organisms assemble has long been a central question in ecology. The impact of habitat filtering and limiting similarity on plant community structures is well known, as both processes are influenced by individual responses to environmental fluctuations. Yet, the precise identifications and quantifications of the potential abiotic and biotic factors that shape community structures at a fine scale remains a challenge. Here, we applied null model approaches to assess the importance of habitat filtering and limiting similarity at two spatial scales. We used 63 natural vegetation plots, each measuring 5 × 5 m, with three nested subplots measuring 1 × 1 m, from the 2021 field survey, to examine the alpha diversity as well as beta diversity of plots and subplots. Linear mixed‐effects models were employed to determine the impact of environmental variables on assembly rules. Our results demonstrate that habitat filtering is the dominant assembly rules at both the plot and subplot levels, although limiting similarity assumes stronger at the subplot level. Plot‐level limiting similarity exhibited a positive association with fine‐scale partitioning, suggesting that trait divergence originated from a combination of limiting similarity and spatial partitioning. Our findings also reveal that the community assembly varies more strongly with the mean annual temperature gradient than the mean annual precipitation. This investigation provides a pertinent illustration of non‐random assembly rules from spatial scale and environmental factors in plant communities in the loess hilly region. It underscores the critical influence of spatial and environmental constraints in understanding the assembly of plant communities.

Studies of niche differentiation and biodiversity often focus on a few niche dimensions due to the methodological challenge of describing hyperdimensional niche space. However, this may limit our understanding of community assembly processes. We used the full spectrum of realized niche types to study arbuscular mycorrhizal fungal communities: distinguishing abiotic and biotic, and condition and resource, axes. Estimates of differentiation in relation to different niche types were only moderately correlated. However, coexisting taxon niches were consistently less differentiated than expected, based on a regional null model, indicating the importance of habitat filtering at that scale. Nonetheless, resource niches were relatively more differentiated than condition niches, which is consistent with the effect of a resource niche‐based coexistence mechanism. Considering niche types, and in particular distinguishing resource and condition niches, provides a more complete understanding of community assembly, compared with studying individual niche axes or the full niche. [ABSTRACT FROM AUTHOR]

Aim: Trait‐based approaches are powerful to examine the processes associated with biological invasions. Functional comparison among native and non‐indigenous species (NIS) can notably infer whether novel assemblages result from neutral or niche‐based assembly rules. Applying such a framework to biofouling communities, our study aimed to elucidate their distributions within two marine urban habitats (namely floating vs. nonfloating habitats). Location: Southeast Pacific—Central Chilean coastline. Methods: Here, we examined the distribution of 12 functional traits in fouling communities established on settlement plates, after 3 and 13 months of deployment in the two habitats and across ports in Central Chile. Based upon previously described differences of assemblages and NIS contribution across habitats, we hypothesized that nonindigenous, cryptogenic and native taxon pools would be functionally distinct (and trait biased), and that functional diversity and structure would vary across habitats and successional stages. Results: Our results show, as anticipated, that nonindigenous (13 taxa), cryptogenic (12) and native (18) taxon pools are functionally distinct, though overlapping in the trait space. Non‐indigenous species are rather related to colonizing traits, while native species are more related to competitive traits. Only one widespread NIS was functionally similar to the late successional and most competitive native species, including taxa elsewhere invasives. Despite differences in taxonomic composition between habitats, we did not observe functional differences between them. In contrast, temporal variations across colonization stages were detected along with an increased contribution in large and long‐lived taxa, together with site‐specific trajectories. Main Conclusions: We conclude that the functional distinctness among nonindigenous, cryptogenic and native taxa occupying artificial habitats in ports reflects niche‐based processes. Site‐specific trajectories indicate that scale‐dependent assembly processes, such as dispersal and species interactions, are at play. [ABSTRACT FROM AUTHOR]

One of the key questions in ecology is to understand the mechanisms that modulate the coexistence between sympatric species. Climate and habitat perturbation gradients have been proposed as moderators of species coexistence. The first is related to availability and the diversity of food resources. The second is related to change in habitat structure that promotes changes in plant structure and diversity that impacts the diversity of other organisms. Although there is empirical evidence that supports these mechanisms to explain coexistence, they have not been evaluated quantitatively and on a wide geographic scale. Using phytophagous bat species of the genus Sturnira we evaluated both mechanisms. These bats are morphologically similar and are key organisms for the seed dispersal of Neotropical forest plants. Using systematic review protocols, we obtained data of the occurrence and relative abundance of sympatric Sturnira species of different Neotropical forests. We used generalized linear models to evaluate the predictor power of Holdridge's life zones and habitat disturbance type to explain the evenness of sympatric Sturnira species. Life zones did not explain the variation in evenness of sympatric species of Sturnira. However, we found that the type of disturbance and individuals captured explain the variation of evenness in Sturnira species. Grasslands present the higher Sturnira species evenness, while sites with lower bat captures had higher evenness. These suggest that the reduction of vegetation complexity allows the coexistence among these highly related species, via the reduction of their relative abundances. [ABSTRACT FROM AUTHOR]

Riparian plant communities are key to ecosystem functioning and important providers of ecosystem services on which wildlife and people depend. Ecosystem functioning and stability depend on functional diversity and redundancy. Therefore, understanding which and how different drivers shape community assembly processes and functional patterns is crucial. However, there is limited knowledge of these processes at larger scales for the entire riparian vascular plant community.Two community assembly processes dominate: environmental filtering, where species living in similar environments have similar traits leading to trait convergence; and limiting similarity, where similar traits cause species to compete more strongly leading to trait divergence. We assessed functional diversity patterns of riparian vascular plant communities across an Atlantic–Mediterranean biogeographical gradient in north Portugal.We used functional diversity indices and null models to detect community assembly processes and whether these processes change along environmental gradients. We hypothesised that environmental filtering associated with precipitation and aridity would be the prevailing assembly process at a regional scale. We also expected a shift from environmental filtering to limiting similarity as precipitation‐related stress declined.As hypothesised, patterns of functional diversity were consistent with environmental filtering of species occurrences at the regional scale. Functional patterns were also consistent with a shift between environmental filtering and limiting similarity as cold and aridity stress declined. Under stressful environmental conditions, communities showed lower functional divergence and richness than expected by chance. Environmental filtering was more strongly associated with minimum temperatures than precipitation and aridity.Underlining the need for hierarchical approaches and the analysis of multiple climatic stressors, our results highlighted the relevance of large‐scale environmental stress gradients and the potential role of community assembly in influencing riparian functional diversity. Alterations in stress filters due to climate change will affect assembly processes and functional patterns, probably affecting ecosystem functioning and stability. [ABSTRACT FROM AUTHOR]

Understanding how species assemble into communities is a central issue in community ecology. So far, most studies have focused on the assembly mechanisms of vascular plant communities, while the role of deterministic (environmental filtering and biotic interactions) and stochastic (e.g. dispersal limitation) processes structuring bryophyte assemblages remains poorly understood.To evaluate how different assembly processes shape bryophyte communities in mountain streams, we examined functional trait patterns across spatial scales and along environmental gradients. To do so, we sampled 754 microhabitat plots (0.25 m2) nested within 165 sites (100‐m long stream segments) and 13 sub‐basins, located in the northwest and central‐west of Portugal. At each spatial scale, observed functional diversity indices (Functional Richness and Rao's quadratic entropy) were compared to random expectations derived from null models, followed by the analysis of changes in functional trait patterns along environmental gradients by fitting a series of generalized additive mixed models.At local scales (site and microhabitat plot), coexisting species tended to be more functionally similar than expected, suggesting the prevalence of environmental filtering effects. In contrast, no significant deviations from random expectations were detected at the broadest spatial scale (sub‐basin), indicating the prevalence of stochastic processes. We found contrasting assembly processes along environmental gradients: environmental filtering prevailed in stressful environments, while competitive interactions were more important in favourable conditions.Synthesis. Our results highlight the role of environmental filtering in bryophyte community assembly at fine spatial scales, emphasizing the importance of measuring environmental conditions at the same spatial scales where biotic interactions take place. In line with the stress‐dominance hypothesis, the relative importance of environmental filtering increased with abiotic stress. Thus, analysing functional trait patterns across different spatial scales and environmental gradients may contribute to a better understanding of the mechanisms underlying community assembly. [ABSTRACT FROM AUTHOR]

Simple Summary: This study explores beta diversity patterns of birds, and their underlying processes with respect to taxonomic, phylogenetic, and functional facets, in the Meili Snow Mountains, Yunnan Province, China. A total of 3758 individuals representing 132 bird species were recorded during the fieldwork. We found distance–decay patterns on both the taxonomic and phylogenetic beta diversity along the elevational distance, with strong positive correlations with potential evapotranspiration and annual mean temperature. The turnover component dominated both the taxonomic and phylogenetic beta diversity. For both taxonomy and phylogeny, the limiting similarity dominated the turnover process in the Meili Snow Mountains. Our study aimed to provide information on understanding the mechanisms of beta diversity patterns in multiple dimensions. Understanding the elevational patterns of beta diversity in mountain regions is a long-standing problem in biogeography and ecology. Previous research has generally focused on the taxonomy facet on a large scale, but was limited with regard to multi-facet beta diversity. Accordingly, we constructed a multi-dimensional (taxonomic/phylogenetic/functional) framework to analyze the underlying mechanisms of beta diversity. Within an approximately 2000 m altitudinal range (from 2027 m to 3944 m) along the eastern slope of the Meili Snow Mountains in Deqin County, Yunnan Province, China, we performed field surveys of breeding and non-breeding birds in September/2011 and May/2012, respectively. In total, 132 bird species were recorded during the fieldwork. The results indicated that taxonomic beta diversity contributed 56% of the bird species diversity, and its turnover process dominated the altitudinal pattern of taxon beta diversity; beta phylogenetic diversity contributed 42% of the bird phylogenetic diversity, and its turnover process also appeared to be stronger than the nestedness. For both taxonomy and phylogeny, the null models standardized measures (SES.βsim/SES.βsne/SES.βsor) of paired dissimilarities between elevation zones all showed statistically significant differences (p ≤ 0.05) and were higher than expected (SES.β > 0). However, standardized functional beta diversity showed convergence along the elevational gradient with no significant change. Moreover, the functional beta diversity contributed 50% of the bird functional diversity; there was no significant difference between the turnover and the nestedness-resultant component. Based on these results, we discerned that taxonomic and phylogenetic beta diversity patterns among the elevational zone were overdispersed, which indicated that limiting similarity dominated the turnover process among the bird species and phylogenetic communities in the Meili Snow Mountains. [ABSTRACT FROM AUTHOR]

Many anthropogenic stressors broadly inflict mortality or reduce fecundity, including habitat destruction, pollution, climate change, invasive species, and multispecies harvesting. Here, we show-in four analytical models of interspecies competition-that broadly inflicted stressors disproportionately cause competitive exclusions within groups of ecologically similar species. As a result, we predict that ecosystems become progressively thinner-that is, they have progressively less functional redundancy-as broadly inflicted stressors become progressively more intense. This may negatively affect the temporal stability of ecosystem functions, but it also buffers ecosystem productivity against stress by favoring species less sensitive to the stressors. Our main result follows from the weak limiting similarity principle: species with more similar ecological niches compete more strongly, and their coexistence can be upset by smaller perturbations. We show that stressors can cause indirect competitive exclusions at much lower stressor intensity than needed to directly cause species extinction, consistent with the finding of empirical studies that species interactions are often the proximal drivers of local extinctions. The excluded species are more sensitive to the stressor relative to their ecologically similar competitors. Moreover, broadly inflicted stressors may cause hydra effects-where higher stressor intensity results in higher abundance for a species with lower sensitivity to the stressor than its competitors. Correlations between stressor impacts and ecological niches reduce the potential for indirect competitive exclusions, but they consequently also reduce the buffering effect of ecosystem thinning on ecosystem productivity. Our findings suggest that ecosystems experiencing stress may continue to provision ecosystem services but lose functional redundancy and stability.

Background and Aims Trait-based frameworks assess plant survival strategies using different approaches. Some frameworks use functional traits to assign species to a priori defined ecological strategies. Others use functional traits as the central element of a species ecophysiological strategy. We compared these two approaches by asking: (1) what is the primary ecological strategy of three dominant co-occurring shrub species from inselbergs based on the CSR scheme, and (2) what main functional traits characterize the ecophysiological strategy of the species based on their use of carbon, water and light? Methods We conducted our study on a Colombian inselberg. In this extreme environment with multiple stressors (high temperatures and low resource availability), we expected all species to be stress tolerant (S in the CSR scheme) and have similar ecophysiological strategies. We measured 22 anatomical, morphological and physiological leaf traits. Key Results The three species have convergent ecological strategies as measured by CSR (S, Acanthella sprucei ; and S/CS, Mandevilla lancifolia and Tabebuia orinocensis) yet divergent resource-use strategies as measured by their functional traits. A. sprucei has the most conservative carbon use, risky water use and a shade-tolerant strategy. M. lancifolia has acquisitive carbon use, safe water use and a shade-tolerant strategy. T. orinocensis has intermediate carbon use, safe water use and a light-demanding strategy. Additionally, stomatal traits that are easy to measure are valuable to describe resource-use strategies because they are highly correlated with two physiological functions that are hard to measure: stomatal conductance and maximum photosynthesis per unit mass. Conclusions The two approaches provide complementary information on species strategies. Plant species can co-occur in extreme environments, such as inselbergs, because they exhibit convergent primary ecological strategies but divergent ecophysiological strategies, allowing them to use limiting resources differently. [ABSTRACT FROM AUTHOR]

All animals on Earth compete for free energy, which is acquired, assimilated, and ultimately allocated to growth and reproduction. Competition is strongest within communities of sympatric, ecologically similar animals of roughly equal size (i.e. horizontal communities), which are often the focus of traditional community ecology. The replacement of taxonomic identities with functional traits has improved our ability to decipher the ecological dynamics that govern the assembly and functioning of animal communities. Yet, the use of low‐resolution and taxonomically idiosyncratic traits in animals may have hampered progress to date. An animal's metabolic rate (MR) determines the costs of basic organismal processes and activities, thus linking major aspects of the multifaceted constructs of ecological niches (where, when, and how energy is obtained) and ecological fitness (how much energy is accumulated and passed on to future generations). We review evidence from organismal physiology to large‐scale analyses across the tree of life to propose that MR gives rise to a group of meaningful functional traits – resting metabolic rate (RMR), maximum metabolic rate (MMR), and aerobic scope (AS) – that may permit an improved quantification of the energetic basis of species coexistence and, ultimately, the assembly and functioning of animal communities. Specifically, metabolic traits integrate across a variety of typical trait proxies for energy acquisition and allocation in animals (e.g. body size, diet, mobility, life history, habitat use), to yield a smaller suite of continuous quantities that: (1) can be precisely measured for individuals in a standardized fashion; and (2) apply to all animals regardless of their body plan, habitat, or taxonomic affiliation. While integrating metabolic traits into animal community ecology is neither a panacea to disentangling the nuanced effects of biological differences on animal community structure and functioning, nor without challenges, a small number of studies across different taxa suggest that MR may serve as a useful proxy for the energetic basis of competition in animals. Thus, the application of MR traits for animal communities can lead to a more general understanding of community assembly and functioning, enhance our ability to trace eco‐evolutionary dynamics from genotypes to phenotypes (and vice versa), and help predict the responses of animal communities to environmental change. While trait‐based ecology has improved our knowledge of animal communities to date, a more explicit energetic lens via the integration of metabolic traits may further strengthen the existing framework. [ABSTRACT FROM AUTHOR]

The grass Festuca arundinacea is often planted for slope stabilisation in South Korea, and is spreading widely beyond the introduction sites. This study used a functional group approach to examine the resistance of plant combinations to invasion by F. arundinacea based on the limiting similarity and diversity-resistance hypotheses, and to elucidate the process of colonisation. The study simulated the environment of construction sites and surrounding areas that might be encountered by expanding populations of F. arundinacea. The role of nutrient condition in the ranking of functional group competitive ability was also examined. Twelve native plant species were categorised into three functional groups using combinations of functional traits. Pairwise (one-to-one competition), multiple (four different neighbouring species) and monoculture experimental settings were designed using two nutrient levels. The Relative Competition Index was used to interpret the competitive effect of neighbouring species on F. arundinacea. Species of the same functional group as F. arundinacea were unable to resist invasion, but annual plants with niche preemption ability could outcompete it. Competitive relationships between native plants and F. arundinacea were explained partially by functional group identity but were inconsistent with the limiting similarity hypothesis and the diversity-interaction. Unforeseen interactions within the artificial communities also produced unexpected effects. In designing artificial plant communities, it is necessary to consider functional traits that reflect the species characteristic of particular periods and indirect effects that modify the interaction between other species.

Abstract Many scholars have attempted to identify the role of deterministic and stochastic processes in community assembly, but there is no consensus on which processes dominate and at what spatial scales they occur. To shed light on this issue, we tested two non-exclusive processes, scale-dependent hypotheses: (i) that limiting similarity dominates on small spatial scales; and (ii) that environmental filtering does so on a large scale. To achieve this, we studied the functional patterns of dry evergreen Afromontane forest communities along elevation gradients in southeastern Ethiopia using floristic and functional trait data from fifty-four 0.04 ha plots. We found evidence of functional overdispersion on small spatial scales, and functional clustering on large spatial scales. The observed clustering pattern, consistent with an environmental filtering process, was most evident when environmental differences between a pair of plots were maximized. To strengthen the link between the observed community functioning pattern and the underlying process of environmental filtering, we demonstrated differences in the topographical factors of the most abundant species found at lower and higher elevations and examined whether their abundance varied over time or changed with time along the elevation. We found (i) that the largest functional differences in the community (observed between lower and upper dry evergreen Afromontane forest assemblages) were primarily the result of strong topographical influence; and (ii) that the abundance of such species varied along the elevation gradient. Variation in stand structure and tree species diversity within the DAF plots shows that topography is among the important drivers of local species distribution and hence the maintenance of tree diversity in dry Afromontane forest. Our results support the conclusion that environmental filtering at large spatial scales is the primary mechanism for community merging, since functional grouping pattern was associated with species similarities in topographic variation, ultimately leading to changes in species abundances along the gradient. There was also evidence of competitive exclusion at more homogeneous and smaller spatial scales, where plant species compete effectively for resources.

Understanding the spatial patterns and the maintenance of biodiversity is a central target in ecology and biogeography, which provide important insights into community assembly processes. Mountain ecosystems provide informative systems for examining how biodiversity is distributed and identifying the mechanisms underlying those patterns. However, most of the existed studies only focused on plants, birds, and microbes, while little attention has been paid on amphibians, especially tadpoles. In the present study, we explored the elevational patterns of multiple facets of tadpole diversity and the community assembly mechanisms in temperate montane streams of Mount Emei, China. The taxonomic, functional, and phylogenetic diversity of tadpole assemblages in montane streams were quantified. Their elevational patterns were investigated using first and second-order polynomial regression analyses. The microhabitat determinants of these patterns were assessed by ordinary least squares models and hierarchical partitioning analyses. The phylogenetic tree of tadpoles and the Eucliden distance of traits between tadpoles were constructed. They were subsequently used to calculate the standardized effect size of mean pairwise phylogenetic and functional distances, and to speculate the tadpole assembly rules. Our results indicated that the Faith’s PD and the standardized effect size of Faith’s PD had hump-shaped responses to elevation, while the relationships between elevation and observed taxonomic diversity, observed functional diversity, and the standardized effect size of functional diversity were not significant. Interestingly, these patterns were determined by microhabitat variables, such as water conductivity, river width, water depth, and substrate type. Mean pairwise phylogenetic distance also showed hump-shaped correlations with the elevational gradient. Tadpole functional and phylogenetic structures were more clustered in low and high elevational streams, suggesting that environmental filtering was the main driver. At mid-elevations, functional and phylogenetic structures were overdispersal, indicating that limiting similarity plays a dominant role in shaping the tadpole assemblages.

The coexistence of closely related species is key to understanding the nature of biodiversity hotspots where in situ diversification has yielded rich communities of close relatives. Limiting similarity predicts that co‐occurring species are differentiated in their niches; identifying the axes of differentiation in sympatric close relatives can thus help reveal the eco‐evolutionary dynamics of community assembly. For flowering plants, these axes may be temporal (related to reproductive phenology) or morphological (related to functional traits).We collected fine‐scale data on abundance, morphology and phenology over a flowering season for 34 species of Rhododendron (Ericaceae) spanning a 2700 m elevation gradient in a nature reserve in the eastern Hengduan Mountains, China. We used null models to test for patterns of clustering versus overdispersion in species' abundances, phylogenetic relatedness and functional traits across sites, and applied joint distribution models to examine the correlates of pairwise associations.We found that species tended to be spatially aggregated, indicating that communities are not strongly structured by competitive exclusion. At higher elevation sites, species tended to be vegetatively more similar (clustered) and closely related. Environmental variables, including climate and topography, were strong predictors of species' ranges. No evidence of niche differentiation was detected along spatial or morphological (functional) axes, but along the temporal axis, the phenology of co‐occurring species showed significant divergence, and was less phylogenetically conserved compared to morphological traits.Synthesis. Local communities of Rhododendron in its centre of diversity are structured by environmental filtering and the effects of limiting similarity. Evidence for the latter is apparent in the pervasive phenological divergence of co‐occurring species, likely driven by reproductive interference from shared pollinators. The evolutionary lability of flowering time appears to render it the quickest path to coexistence for recently diverged species that experience secondary contact in this biodiversity hotspot. [ABSTRACT FROM AUTHOR]

Premise: Numerous processes influence plant distributions and co‐occurrence patterns, including ecological sorting, limiting similarity, and stochastic effects. To discriminate among these processes and determine the spatial scales at which they operate, we investigated how functional traits and phylogenetic relatedness influence the distribution of temperate forest herbs. Methods: We surveyed understory plant communities across 257 forest stands in Wisconsin and Michigan (USA) and applied Bayesian phylogenetic linear mixed‐effects models (PGLMMs) to quantify how functional traits and phylogenetic relatedness influence the environmental distribution of 139 herbaceous plant species along broad edaphic, climatic, and light gradients. These models also allowed us to test how functional and phylogenetic similarity affect species co‐occurrence within microsites. Results: Leaf height, specific leaf area, and seed mass all influenced individualistic plant distributions along landscape‐scale gradients in soil texture, soil fertility, light availability, and climate. In contrast, phylogenetic relationships did not consistently predict species‐environment relationships. Neither functionally similar nor phylogenetically related herbs segregated among microsites within forest stands. Conclusions: Trait‐mediated ecological sorting appears to drive temperate‐forest community assembly, generating individualistic plant distributions along regional environmental gradients. This finding links classic studies in plant ecology and prior research in plant physiological ecology to current trait‐based approaches in community ecology. However, our results fail to support the common assumption that limiting similarity governs local plant co‐occurrences. Strong ecological sorting among forest stands coupled with stochastic fine‐scale interactions among species appear to weaken deterministic, niche‐based assembly processes at local scales. [ABSTRACT FROM AUTHOR]

Ectomycorrhizal fungi (EMF) form symbiotic relationship with the roots of host plants. EMF communities are composed of highly diverse species; however, how they are assembled has been a long-standing question. In this study, we investigated from a phylogenetic perspective how EMF communities assemble on Pinus densiflora seedlings at different spatial scales (i.e., seedling scale and root tip scale). P. densiflora seedlings were collected from different habitats (i.e., disturbed areas and mature forests), and their EMF communities were investigated by morphotype sequencing and next-generation sequencing (NGS). To infer assembly mechanisms, phylogenetic relatedness within the community (i.e., phylogenetic structure) was estimated and spatial distribution of EMF root tips was analyzed. The EMF communities on pine seedlings were largely different between the two habitats. Phylogenetically restricted lineages (Amphinema, /suillus–rhizopogon) were abundant in the disturbed areas, whereas species from diverse lineages were abundant in the mature forests (Russula, Sebacina, /tomentella–thelephora, etc.). In the disturbed areas, phylogenetically similar EMF species were aggregated at the seedling scale, suggesting that disturbance acts as a powerful abiotic filter. However, phylogenetically similar species were spatially segregated from each other at the root tip scale, indicating limiting similarity. In the mature forest seedlings, no distinct phylogenetic signals were detected at both seedling and root tip scale. Collectively, our results suggest that limiting similarity may be an important assembly mechanism at the root tip scale and that assembly mechanisms can vary across habitats and spatial scales. [ABSTRACT FROM AUTHOR]

Biological invasions are key to understanding ecological processes that determine the formation of novel interactions. Alien species can negatively impact floral visitation to native species, but native species may also facilitate early establishment of closely related alien species by providing a preadapted pollinator community. We tested whether floral visitation to alien species depended on phylogenetic relatedness and floral similarity to native species.In a field experiment, we simulated the early stages of an invasion by adding potted alien plants into co‐flowering native communities. We paired each alien plant with a host native plant, and recorded floral visitation to them for 3,068 hr (totalling 84,814 visits). We used 34 alien and 20 native species in 151 species combinations. We tested whether the number of floral visits to alien plants, the proportion of visits to alien plant relative to visits to both alien and native plants, and the similarity in flower visitor compositions of alien and native plants depended on phylogenetic and floral trait distances between alien and native species.Floral visitation to alien species was highest when they had intermediate floral trait distances to native species, and either low or high phylogenetic distances. Alien species received more similar flower‐visitor groups to natives when they had low phylogenetic and either low or high floral trait distances to native species.Co‐flowering native species may facilitate floral visitation to closely related alien species, and distantly related alien plants seem to avoid competition for flower visitors with native plants. Alien species with similar floral traits to natives compete with them for flower visitors, and alien species with dissimilar floral traits may not share flower visitors with native species. Alien species with intermediate floral trait distances to natives are most likely to receive flower visitors, as they are not too dissimilar and may still share flower visitors with native species, but not too similar to compete for flower visitors with them.The non‐linear patterns between floral visitation and similarity of the alien and native species suggest that an interplay of facilitation and competition simultaneously drives the formation of novel plant‐pollinator interactions. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

To understand the functional meaning of morphological traits in the exploitation of natural resources, it is necessary to develop a quantitative, meaningful scheme for understanding ecophenotypes; this will facilitate management and conservation, which are the most pressing challenges in vulnerable aquatic environments. In this context, the management of cryptic and very similar species is more challenging, because of the difficulty of distinguishing them and determining their frequency in sympatry, even though they do not necessarily have the same ecologies. As such, in order to understand how morphological similarities are associated with their ecology, thirteen morphometric characteristics related to body landmark-based geometric morphometries, sagittal otolith morphology, and shape were examined in mature Chelon auratus and Chelon saliens, which were collected from the coastal waters of the southwest Caspian Sea between October 2020 and April 2021. Univariate and multivariate analysis of variance were conducted to evaluate the potential morphological differences between the species. The analyses highlight the morphological differences between C. auratus and C. saliens, and identify potentially helpful traits for using body and otolith shape for the interspecific distinction of these very similar species of Caspian mullet, which can reflect functional similarity and are an important component of community ecology. [ABSTRACT FROM AUTHOR]

Gall‐inducing insects exhibit elevated levels of oviposition and host specificity. An interesting pattern within the interaction between gall‐inducing insects and host plants is the fact that some species of plants, called super‐hosts, harbour several species of gall‐inducing insects. However, little is known about the mechanisms influencing the coexistence of gall‐inducing insects in super‐host plants. Here, we tested the mechanisms that allow the coexistence of multiple gall‐inducing insects associated with Copaifera langsdorffii Desf., a super‐host tropical tree. Specifically, we tested three non‐exclusive hypotheses: (i) Spatial niche partitioning: gall‐inducing species will inhabit distinct organs in the same plant; (ii) temporal niche partitioning: gall‐inducing insects occupy the host plant in different months, and (iii) local‐regional relationship: regional richness will be high, while local richness will be low, indicating high turnover (i.e. β‐diversity) of insects among individuals of the super‐host plant. We found no evidence that gall‐inducing insects are inhabiting distinct organs in the same host plant or that they are occurring in different vertical or horizontal strata. Furthermore, the incidence of other gall‐inducing insects has little effect on whether a given focal species is also found in the host plant. In contrast, gall‐inducing insects showed temporal resource partitioning with species occurring in two different periods. We also found a low α‐diversity with individuals of C. langisdorffii harbouring different gall species composition. Our results show that the temporal resource partitioning and the high β‐diversity among host plants are the main factors explaining the high number of gall‐inducing insects associated with C. langisdorffii. [ABSTRACT FROM AUTHOR]

The efficient conservation of vulnerable ecosystems in the face of global change requires a complete understanding of how plant communities respond to various environmental factors. We aim to demonstrate that a combined use of different approaches, traits, and indices representing each of the taxonomic and functional characteristics of plant communities will give complementary information on the factors driving vegetation assembly patterns. We analyzed variation across an environmental gradient in taxonomic and functional composition, richness, and diversity of the herb-layer of a temperate beech-oak forest that was located in northern Spain. We measured species cover and four functional traits: leaf dry matter content (LDMC), specific leaf area (SLA), leaf size, and plant height. We found that light is the most limiting resource influencing herb-layer vegetation. Taxonomic changes in richness are followed by equivalent functional changes in the diversity of leaf size but by opposite responses in the richness of SLA. Each functional index is related to different environmental factors even within a single trait (particularly for LDMC and leaf size). To conclude, each characteristic of a plant community is influenced by different and even contrasting factors or processes. Combining different approaches, traits, and indices simultaneously will help us understand how plant communities work. [ABSTRACT FROM AUTHOR]

Understanding the elevational patterns of beta diversity in mountain regions is a long-standing problem in biogeography and ecology. Previous research has generally focused on the taxonomy facet on a large scale, but was limited with regard to multi-facet beta diversity. Accordingly, we constructed a multi-dimensional (taxonomic/phylogenetic/functional) framework to analyze the underlying mechanisms of beta diversity. Within an approximately 2000 m altitudinal range (from 2027 m to 3944 m) along the eastern slope of the Meili Snow Mountains in Deqin County, Yunnan Province, China, we performed field surveys of breeding and non-breeding birds in September/2011 and May/2012, respectively. In total, 132 bird species were recorded during the fieldwork. The results indicated that taxonomic beta diversity contributed 56% of the bird species diversity, and its turnover process dominated the altitudinal pattern of taxon beta diversity; beta phylogenetic diversity contributed 42% of the bird phylogenetic diversity, and its turnover process also appeared to be stronger than the nestedness. For both taxonomy and phylogeny, the null models standardized measures (SES.βsim/SES.βsne/SES.βsor) of paired dissimilarities between elevation zones all showed statistically significant differences (p ≤ 0.05) and were higher than expected (SES.β > 0). However, standardized functional beta diversity showed convergence along the elevational gradient with no significant change. Moreover, the functional beta diversity contributed 50% of the bird functional diversity; there was no significant difference between the turnover and the nestedness-resultant component. Based on these results, we discerned that taxonomic and phylogenetic beta diversity patterns among the elevational zone were overdispersed, which indicated that limiting similarity dominated the turnover process among the bird species and phylogenetic communities in the Meili Snow Mountains.

Plant communities are predicted to be more resistant to invasion if they are highly productive, harbor species with similar functional traits to invaders, or support species with high competitive potential. However, the strength of competition may decrease with increasing abiotic stress if species more heavily invest in traits that confer stress tolerance over competitive ability, potentially influencing community trait–resistance relationships. Recent research examining how community traits influence invasion resistance has been predominantly focused on single vegetation types, and results between studies are often conflicting. Few studies have evaluated the extent to which abiotic factors and community traits interact to influence invasion along vegetation gradients. Here, we use an in situ seed addition experiment to examine how above‐ and below‐ground plant traits and vegetation type interact to influence community resistance to invasion by a recently introduced annual grass, Ventenata dubia, along a productivity gradient in eastern Oregon, USA. To measure invasion resistance, we evaluated V. dubia biomass in seeded subplots with varying trait compositions across three vegetation types situated along a productivity gradient: scab‐flats (sparsely vegetated dwarf‐shrublands), low sage‐steppe, and ephemeral wet meadows. Trait–resistance relationships were highly context dependent. In wet meadows (the most productive sites), resistance to invasion increased with increasing resident biomass and as community weighted mean trait values for specific leaf area, fine‐to‐total root volume, and height become more similar to V. dubia's trait values, although these relationships were relatively weak. We did not find evidence that neighboring species influenced invasion resistance in less productive vegetation types, in contrast to our expectations that facilitative interactions may increase with decreasing productivity as posited by the stress‐gradient hypothesis. Unlike V. dubia, which heavily invaded all three vegetation types, introduced species with similar trait values, including Bromus tectorum, were not abundant throughout the study area demonstrating V. dubia's unique ability to take advantage of available resources. Our results illustrate how community traits and site productivity interact to influence community resistance to invasion and highlight that communities with lower overall biomass and few functionally similar species to V. dubia may be at the greatest risk for invasion. [ABSTRACT FROM AUTHOR]

Trait‐based models of ecological communities and ecosystem functioning often fail to account for intraspecific variation in functional traits, assuming that intraspecific variability is negligible compared with interspecific variability. However, this assumption remains poorly tested across vertebrate animals where past studies routinely describe species according to mean trait values without explicit consideration of individual trait variability. We assessed nine functional traits for 4254 individuals belonging to 15 freshwater fish species from 11 families in northern Australia, including body elongation, body shape, caudal peduncle throttle, eye size, eye position, gape shape, gape size, mouth position, and pectoral fin length. We quantified the extent and geography of intraspecific trait variability and its relationship with riverine hydrologic regimes using a structured sampling design. Using a combination of single‐ and multi‐trait analyses, we demonstrate that intraspecific trait variability can contribute up to 70% of the total trait variability depending on the attribute considered and averaged 31% across all traits. The magnitude of intraspecific trait variability also varied across the hydrological permanency gradient. Fish assemblages in intermittent streams subjected to frequent environmental disturbance had high intraspecific trait variability, most likely due to strong abiotic filters limiting interspecific divergence. Conversely, assemblages in perennial rivers with less harsh environmental filters but with a larger pool of species expressed lower intraspecific trait variability: This is most likely due to stronger resource competition (biotic filter), which promotes specialization of resource use and, consequently, interspecific divergence. Our study provides the first evidence of intraspecific trait variability driven by a disturbance gradient for an animal group and points to the need for additional research into the functional importance of intraspecific variability in animal ecology. A better understanding of the patterns, drivers, and implications of intraspecific trait variability will help guide mechanistic‐based predictions of the effects of environmental changes on community assemblage and ecosystem processes. [ABSTRACT FROM AUTHOR]

The assumption that differences in species' traits reflect their different niches has long influenced how ecologists infer processes from assemblage patterns. For instance, many assess the importance of environmental filtering versus classical limiting-similarity competition in driving biological invasions by examining whether invaders' traits are similar or dissimilar to those of residents, respectively. However, mounting evidence suggests that hierarchical differences between species' trait values can distinguish their competitive abilities (e.g. for the same resource) instead of their niches. Whether such trait-mediated hierarchical competition explains invasions and structures assemblages is less explored. We integrate morphological, dietary, physiological and behavioural trait analyses to test whether environmental filtering, limiting-similarity competition or hierarchical competition explain invasions by fire ants on ant assemblages. We detect both competition mechanisms; invasion success is not only explained by limiting similarity in body size and thermal tolerance (presumably allowing the invader to exploit different niches from residents), but also by the invader's superior position in trait hierarchies reflecting competition for common trophic resources. We find that the two mechanisms generate complex assemblage-level functional diversity patterns—overdispersion in some traits, clustering in others—suggesting their effects are likely missed by analyses restricted to a few traits and composite trait diversity measures. [ABSTRACT FROM AUTHOR]

Even after more than a century of research, the processes underlying species abundance distribution patterns are controversial. Here, we gathered abundance and size (standard length) data of fish species in 54 streams in the Midwest of Brazil to test whether subordinate species abundances (i.e., any species that is not dominant in a community) in each stream are correlated with the absolute size difference between dominant and subordinate species. A negative relationship between these variables would suggest a predominant role of environmental filtering because those species that differ more from the dominant species (the one with the optimum trait value) would become progressively less abundant. On the other hand, a positive relationship would suggest a limit to the similarity as the abundances of subordinate species that differ more from the dominant species would increase. Our results clearly indicated that subordinate species were those that most differed from the dominant species in terms of size. In addition, we found that the subordinate species were larger than the dominant species. Taken together, we infer that environmental filters favoring small body sizes (e.g., shallow water depth and scarcity of large shelters) are the main processes determining species abundance distributions in the streams we studied. [ABSTRACT FROM AUTHOR]

Despite intensive research on species dissimilarity patterns across communities (i.e. β‐diversity), we still know little about their implications for variation in food‐web structures. Our analyses of 50 lake and 48 forest soil communities show that, while species dissimilarity depends on environmental and spatial gradients, these effects are only weakly propagated to the networks. Moreover, our results show that species and food‐web dissimilarities are consistently correlated, but that much of the variation in food‐web structure across spatial, environmental, and species gradients remains unexplained. Novel food‐web assembly models demonstrate the importance of biotic filtering during community assembly by (1) the availability of resources and (2) limiting similarity in species' interactions to avoid strong niche overlap and thus competitive exclusion. This reveals a strong signature of biotic filtering processes during local community assembly, which constrains the variability in structural food‐web patterns across local communities despite substantial turnover in species composition. [ABSTRACT FROM AUTHOR]

Abstract Trait‐based models of ecological communities and ecosystem functioning often fail to account for intraspecific variation in functional traits, assuming that intraspecific variability is negligible compared with interspecific variability. However, this assumption remains poorly tested across vertebrate animals where past studies routinely describe species according to mean trait values without explicit consideration of individual trait variability. We assessed nine functional traits for 4254 individuals belonging to 15 freshwater fish species from 11 families in northern Australia, including body elongation, body shape, caudal peduncle throttle, eye size, eye position, gape shape, gape size, mouth position, and pectoral fin length. We quantified the extent and geography of intraspecific trait variability and its relationship with riverine hydrologic regimes using a structured sampling design. Using a combination of single‐ and multi‐trait analyses, we demonstrate that intraspecific trait variability can contribute up to 70% of the total trait variability depending on the attribute considered and averaged 31% across all traits. The magnitude of intraspecific trait variability also varied across the hydrological permanency gradient. Fish assemblages in intermittent streams subjected to frequent environmental disturbance had high intraspecific trait variability, most likely due to strong abiotic filters limiting interspecific divergence. Conversely, assemblages in perennial rivers with less harsh environmental filters but with a larger pool of species expressed lower intraspecific trait variability: This is most likely due to stronger resource competition (biotic filter), which promotes specialization of resource use and, consequently, interspecific divergence. Our study provides the first evidence of intraspecific trait variability driven by a disturbance gradient for an animal group and points to the need for additional research into the functional importance of intraspecific variability in animal ecology. A better understanding of the patterns, drivers, and implications of intraspecific trait variability will help guide mechanistic‐based predictions of the effects of environmental changes on community assemblage and ecosystem processes.

The niche is allegedly the conceptual bedrock underpinning the most prominent, and some would say most important, theorizing in ecology. We argue this point of view is more aspirational than veridical. Rather than critically dissect existing definitions of the concept, the supposedly significant work it is thought to have done in ecology is our evaluative target. There is no denying the impressive mathematical sophistication and theoretical ingenuity of the ecological modeling that invokes ‘niche’ terminology. But despite the pervasive labeling, we demonstrate that niche talk is nothing more than a gloss on theory developed without it, that doesn’t need it, and that doesn’t benefit from it. [ABSTRACT FROM AUTHOR]

The grass Festuca arundinacea is often planted for slope stabilisation in South Korea, and is spreading widely beyond the introduction sites. This study used a functional group approach to examine the resistance of plant combinations to invasion by F. arundinacea based on the limiting similarity and diversity-resistance hypotheses, and to elucidate the process of colonisation. The study simulated the environment of construction sites and surrounding areas that might be encountered by expanding populations of F. arundinacea. The role of nutrient condition in the ranking of functional group competitive ability was also examined. Twelve native plant species were categorised into three functional groups using combinations of functional traits. Pairwise (one-to-one competition), multiple (four different neighbouring species) and monoculture experimental settings were designed using two nutrient levels. The Relative Competition Index was used to interpret the competitive effect of neighbouring species on F. arundinacea. Species of the same functional group as F. arundinacea were unable to resist invasion, but annual plants with niche preemption ability could outcompete it. Competitive relationships between native plants and F. arundinacea were explained partially by functional group identity but were inconsistent with the limiting similarity hypothesis and the diversity-interaction. Unforeseen interactions within the artificial communities also produced unexpected effects. In designing artificial plant communities, it is necessary to consider functional traits that reflect the species characteristic of particular periods and indirect effects that modify the interaction between other species. [ABSTRACT FROM AUTHOR]

Habitat loss is the primary driver of the decline of biodiversity in ecological communities. However, which ecological processes are implicated in the removal of species following habitat loss, i.e. the disassembling of the community, remains unclear in many ecosystems. We address this question by investigating how the taxonomic and functional diversity of bird assemblages are related to fragment size in the Atlantic Forest from northeastern Brazil. We used complementary metrics of diversity and a randomization procedure to test whether changes in diversity result from either random or deterministic processes, such as limiting similarity or habitat filtering. The species–area (SAR) and functional richness–area (FAR) relationships were positive, as expected. However, the FAR had a lower slope than the SAR, which indicates a slower loss of functional richness than that predicted by the loss of species richness. Communities in smaller fragments contain more functionally overdispersed species and a more even distribution of abundance. These results indicate that limiting similarity drives the disassembling of bird assemblages in small fragments of the Atlantic Forest, which presumably reflects increased competition. This dynamic tends to reduce functional redundancy in the impoverished assemblages, with potentially deleterious consequences for ecosystem functioning and forest conservation.

Background: Understanding the mechanisms underlying community assembly is helpful for conservation and restoration of communities, particularly those that contain rare and endangered species like Taxus fuana, which are endemic to the Western Himalayas. The niche (limiting similarity) vs. neutral (randomness) assembly of the T. fuana forest community in Gyirong County, Tibet, China, was investigated. The net relatedness index (NRI) was calculated using a phylogenetic tree. The phylogenetic characteristics of the community and its relationships with environment were analyzed. Results: The value of the mean NRI at the community level was less than (1.96, indicating that the phylogenetic structure was overdispersed; whereas majority of the NRIs at the tree, shrub, and herb layers were within (1.96 to 1.96, indicating random dispersion. Environmental factors accounted for 44.38%, 46.52%, 24.04%, and 14.07% of the variation at the community level, tree, shrub, and herb layer, respectively. The phylogenetic structure at the community level and tree layer were significantly influenced by both topographic and soil factors, while shrub and herb layers tended to be affected by a single environmental factor. Conclusions: Community assembly of the T. fuana forest was simultaneously affected by niche and neutral processes, and their variations were closely related to the environment. Neutral process dominated community assembly in the shrub and herb layers. However, the interaction of limiting similarity and randomness played a dominant role at the community level and tree layer; and contributed to maintenance of biodiversity stability. The synergy of multiple environmental factors had a more obvious influence on community assembly than individual environmental factors, especially at the community level. These findings would help to understand the conservation of rare and endangered tree species, such as T. fuana, in the native community; and highlight the importance of random and non-random processes in assembly and biodiversity maintenance of alpine plant communities. [ABSTRACT FROM AUTHOR]

Understanding the relative contribution of different biotic interactions in shaping species assemblages constitutes a major goal in community ecology, and consequently, multiple methods aimed at inferring the nature of these associations have emerged during the last decade. In this framework, the stress‐gradient hypothesis (SGH) predicts that prevalent biotic interactions shift from competition to facilitation as abiotic stress increases (and productivity decreases). This hypothesis originally raised by plant ecologists has been barely applied to faunal communities. Here, we take advantage of 20 years of abundance data to investigate pairwise patterns in species co‐occurrence in alpine bird communities inhabiting two contrasting habitat types: forests (high productivity) and mountain grasslands (low productivity). We also integrate functional data with presence–absence and quantitative matrices in order to detect the signature of processes driving community assembly and test for limiting similarity. We employ a null model approach, probabilistic pairwise association tests and joint species distribution models; all methods revealed a higher frequency of positive interactions in mountain grasslands in agreement with SGH predictions. Both the frequency of positive and negative interactions remained moderately stable over the study period in both habitat types. There was no significant relationship between the degree of co‐occurrence of species pairs and their functional distance in either habitat. However, when we only considered those combinations of species whose co‐occurrence patterns deviated from that expected at random, we found that co‐existing species are functionally more similar than those pairs that show segregated patterns in the forest assemblages. Such a relationship may arise via selective social information use and other processes, including microhabitat preferences. Overall, our findings suggest that interspecific competition does not constitute a major force driving the structure of bird assemblages in this mountain region. This work also shows that association analyses should not be underestimated as they can provide clues to the mechanisms responsible for community structure. [ABSTRACT FROM AUTHOR]

Aim: The influence of niche and neutral mechanisms on the assembly of ecological communities have long been debated. However, we still have a limited knowledge on their relative importance to explain patterns of diversity across latitudinal gradients (LDG). Here, we investigate the extent to which these ecological mechanisms contribute to the LDG of reef fishes. Location: Eastern Atlantic Ocean. Taxon: Reef‐associated ray‐finned fishes. Methods: We combined abundance data across ~60° of latitude with functional trait data and phylogenetic trees. A null model approach was used to decouple the influence of taxonomic diversity (TD) on functional (FD) and phylogenetic (PD) diversity. Standardized effect sizes (SES FD and SES PD) were used to explore patterns of overdispersion, clustering and randomness. Information theoretic approaches were used to investigate the role of large‐ (temperature, geographic isolation, nitrate and net primary productivity) and local‐scale (human population and depth) drivers. We further assessed the role of demographic stochasticity and its interaction with species trophic identity and dispersal capacity. Results: Taxonomic diversity peaked at ~15°–20°N, with a second mode of lower magnitude at ~45°N; a pattern that was predicted by temperature, geographic isolation and productivity. Tropical regions displayed a higher proportion of overdispersed assemblages, whilst clustering increased towards temperate regions. Phylogenetic and functional overdispersion were associated with warmer, productive and isolated regions. Demographic stochasticity also contributed largely to community assembly, independently of ecoregions, although variation was dependent on the trophic identity and body size of species. Main conclusions: Niche‐based processes linking thermal and resource constraints to local coexistence mechanisms have contributed to the LDG in reef fishes. These processes do not act in isolation, stressing the importance of understanding interactions between deterministic and stochastic factors driving community structure in the face of rapid biodiversity change. [ABSTRACT FROM AUTHOR]

Multichannel food webs are shaped by the ability of apex predators to link asymmetric energy flows in mesohabitats differing in productivity and community traits. While body size is a fundamental trait underlying life histories and demography, its implications for structuring multichannel food webs are unexplored. To fill this gap, we develop a model that links population responses to predation, and resource availability to community‐level patterns, using a tri‐trophic food web model with two populations of intermediate consumers and a size‐selective top predator. We show that asymmetries in mesohabitat productivities and consumer body sizes drive food web structure, merging previously separate theory on apparent competition and emergent Allee effects (i.e. abrupt population collapses) of top predators. Our results yield theoretical support for empirically observed stability of asymmetric multichannel food webs and discover three novel types of emergent Allee effects involving intermediate consumers, multiple populations or multiple alternative stable states. [ABSTRACT FROM AUTHOR]

To understand the functional meaning of morphological traits in the exploitation of natural resources, it is necessary to develop a quantitative, meaningful scheme for understanding ecophenotypes; this will facilitate management and conservation, which are the most pressing challenges in vulnerable aquatic environments. In this context, the management of cryptic and very similar species is more challenging, because of the difficulty of distinguishing them and determining their frequency in sympatry, even though they do not necessarily have the same ecologies. As such, in order to understand how morphological similarities are associated with their ecology, thirteen morphometric characteristics related to body landmark-based geometric morphometries, sagittal otolith morphology, and shape were examined in mature Chelon auratus and Chelon saliens, which were collected from the coastal waters of the southwest Caspian Sea between October 2020 and April 2021. Univariate and multivariate analysis of variance were conducted to evaluate the potential morphological differences between the species. The analyses highlight the morphological differences between C. auratus and C. saliens, and identify potentially helpful traits for using body and otolith shape for the interspecific distinction of these very similar species of Caspian mullet, which can reflect functional similarity and are an important component of community ecology.

Species co-occurrences in local communities can arise independent or dependent on species' niches. However, the role of niche-dependent processes has not been thoroughly deciphered when generalized to biogeographical scales, probably due to combined shortcomings of data and methodology. Here, we explored the influence of environmental filtering and limiting similarity, as well as biogeographical processes that relate to the assembly of species' communities and co-occurrences. We modelled jointly the occurrences and co-occurrences of 1016 tropical tree species with abundance data from inventories of 574 localities in eastern South America. We estimated species co-occurrences as raw and residual associations with models that excluded and included the environmental effects on the species' co-occurrences, respectively. Raw associations indicate co-occurrence of species, whereas residual associations indicate co-occurrence of species after accounting for shared responses to environment. Generally, the influence of environmental filtering exceeded that of limiting similarity in shaping species' co-occurrences. The number of raw associations was generally higher than that of the residual associations due to the shared responses of tree species to the environmental covariates. Contrary to what was expected from assuming limiting similarity, phylogenetic relatedness or functional similarity did not limit tree co-occurrences. The proportions of positive and negative residual associations varied greatly across the study area, and we found a significant tendency of some biogeographical regions having higher proportions of negative associations between them, suggesting that large-scale biogeographical processes limit the establishment of trees and consequently their co-occurrences. [ABSTRACT FROM AUTHOR]

Context: Environmental filtering and limiting similarity have both been hypothesized to influence patterns of species co-occurrence, but in contrasting ways. While environmental filtering results in a greater similarity of functional traits among co-occurring species, limiting similarity predicts that only species with different functional traits can co-occur. Objectives: We evaluated the roles of environmental filtering versus competition in shaping patterns of species co-occurrence in terrestrial versus arboreal species of pond-breeding anurans, and also the influence of local and landscape environmental factors on those patterns, in the Brazilian Cerrado. Methods: We surveyed anurans within 85 ponds and adopted trait-based approaches to investigate patterns of co-occurrence within terrestrial and arboreal species groups. Results: Local-scale environmental filters related to hydroperiod were more important than landscape factors. Habitat split was an important landscape filter, as was the amount of forest relative to pasture cover for arboreal species and the number of water bodies for terrestrial species. Habitat filtering was trait-mediated for arboreal species within ponds of similar size, hydroperiod, and degree of habitat split. Competition was weaker than environmental filters and led to a checkerboard distribution in arboreal species, whereas terrestrial species exhibited limiting similarity within small ponds. Conclusions: The processes that shape species co-occurrence patterns are dependent on spatial scale, degree of habitat degradation, and relative habitat use of species (terrestrial vs. arboreal), such that environmental changes as a result of land-use intensification have the potential to profoundly alter the structure and dynamics of pond-breeding anuran communities in the Cerrado. [ABSTRACT FROM AUTHOR]

Aim: European grassland communities are highly diverse, but patterns and drivers of their continental-scale diversity remain elusive. This study analyses taxonomic and functional richness in European grasslands along continental-scale temperature and precipitation gradients. Location: Europe. Methods: We quantified functional and taxonomic richness of 55,748 vegetation plots. Six plant traits, related to resource acquisition and conservation, were analysed to describe plant community functional composition. Using a null-model approach we derived functional richness effect sizes that indicate higher or lower diversity than expected given the taxonomic richness. We assessed the variation in absolute functional and taxonomic richness and in functional richness effect sizes along gradients of minimum temperature, temperature range, annual precipitation, and precipitation seasonality using a multiple general additive modelling approach. Results: Functional and taxonomic richness was high at intermediate minimum temperatures and wide temperature ranges. Functional and taxonomic richness was low in correspondence with low minimum temperatures or narrow temperature ranges. Functional richness increased and taxonomic richness decreased at higher minimum temperatures and wide annual temperature ranges. Both functional and taxonomic richness decreased with increasing precipitation seasonality and showed a small increase at intermediate annual precipitation. Overall, effect sizes of functional richness were small. However, effect sizes indicated trait divergence at extremely low minimum temperatures and at low annual precipitation with extreme precipitation seasonality. Conclusions: Functional and taxonomic richness of European grassland communities vary considerably over temperature and precipitation gradients. Overall, they follow similar patterns over the climate gradients, except at high minimum temperatures and wide temperature ranges, where functional richness increases and taxonomic richness decreases. This contrasting pattern may trigger new ideas for studies that target specific hypotheses focused on community assembly processes. And though effect sizes were small, they indicate that it may be important to consider climate seasonality in plant diversity studies. [ABSTRACT FROM AUTHOR]

Interspecific interactions, such as competition, are among the key factors that determine the distribution, abundance and diversity of organisms in natural communities of aquatic ecosystems. However, a marked reduction in the environmental integrity of streams may lead to modifications of the natural dynamics of these communities, including co‐occurrence patterns and body size. In the Amazon, the replacement of forests by production systems is one of the leading causes of alterations to riverine ecosystem. The insects of the order Odonata (dragonflies and damselflies) are predators known to compete for environmental resources but are also sensitive to environmental changes such as those caused by shifts in land use. In this scenario, the present study evaluated species co‐occurrence and body size patterns in adult odonates found at preserved and altered Amazonian streams, to determine whether there are morphological differences among the species that enable their coexistence. During the study, 98 streams in the eastern Amazon region were sampled, and a habitat integrity index (HII) was used to evaluate the integrity of each stream (based on variables such as the condition of the riparian vegetation and channel, and land use). Ten male individuals were selected from each species, and nine morphometric measurements were taken from each individual. A total of 3588 specimens were collected and distributed in nine families, 49 genera and 134 species. We found a non‐random pattern of co‐occurrence in the species of the odonate suborder Zygoptera and a random pattern in the suborder Anisoptera, in both preserved and altered streams. We found morphological divergence between pairs of zygopteran species, in the whole sample and both categories of stream integrity separately. No such morphological divergence was found in the pairs of anisopteran species. The distribution patterns of odonate species are limited by specific environmental processes, especially in preserved environments and in specialists, such as most zygopterans. Zygopteran species have more specific microhabitat requirements, which could explain this pattern, whereas anisopterans prefer open environments, which usually have a greater supply of resources, although there tends to be less microhabitat heterogeneity, which leads to reduced competition. Given this, future studies should use limiting similarity (e.g. morphological attributes) in addition to environmental and spatial factors to better understand the factors structuring these communities. Among these mechanisms, the effects of common ancestry (phylogenetic inertia) and biogeography are important factors that should also be considered in future studies. [ABSTRACT FROM AUTHOR]

Describing the rules of community assembly is a central topic of ecology. Studying successional processes through a trait-based null model approach can help to better understand the rules of community assembly. According to theoretical considerations, at the beginning of succession - after getting over the dispersal limitation stage - community composition is primarily shaped by environmental filters (generating functional convergence), while in later stages limiting similarity (generating functional divergence) will be dominant. However, empirical evidence does not clearly support theoretical expectations. Our aim was to detect the presence and changes of trait-based assembly processes during old-field succession based on twelve traits. Changes in vegetation composition were evaluated by a combination of time series and space-for-time substitution: conducting three resurveys of permanent plots on four old-field age-groups. The individual dispersion of traits was transformed into effect size (i.e. departure from null model expectation). The impact of time since abandonment on effect sizes was tested by generalized additive mixed effect models. We detected a non-random pattern for each trait in at least some part of the succession. Departure from randomness did not change significantly over time for six traits: seed mass, lateral spread and pollination type were divergent, while leaf size, generative height and length of flowering were convergent. Six traits had changing patterns along the succession. Four of them showed increasing divergence (e.g. dispersal type, LDMC), which supports our hypothesis. While two (SLA, life form) displayed increasing convergence, contrary to expectations. We confirmed the general hypothesis that convergence is predominant initially and that divergence can be detected later in succession for four traits. However, the large variation found in trait dispersion indicates that complex processes operate during succession. [ABSTRACT FROM AUTHOR]

Functional diversity assessments are crucial and increasingly used for understanding ecological processes and managing ecosystems. The functional diversity of a community is assessed by sampling traits at one or more scales (individuals, populations and species) and calculating a summary index of the variation in trait values. However, it remains unclear how the scales at which traits are sampled and the indices used to estimate functional diversity may alter the patterns observed and inferences about ecological processes.For 40 plant and 61 ant communities, we assess functional diversity using six methods—spanning various mean‐based and probabilistic methods—that reflect common scenarios where different levels of detail are available in trait data. We test whether including trait variability at different scales (from individuals to species) alters functional diversity values calculated using the volume‐based and dissimilarity‐based indices, Functional Richness (FRic) and Rao, respectively. We further test whether such effects alter functional diversity patterns observed across communities and their relationships with environmental drivers such as abiotic gradients and occurrences of invasive species.Intraspecific trait variability strongly determined FRic and Rao. Methods using only species' mean trait values to calculate FRic (convex hulls) and Rao (Gower‐based dissimilarity) distorted the patterns observed when intraspecific trait variability was considered. These distortions generated Type I and Type II errors for the effects of environmental factors structuring the plant and ant communities. A high sensitivity of FRic to individuals with extreme trait values was revealed in comparisons of different probabilistic methods including among‐individual and among‐population trait variability in functional diversity. In contrast, values of and ecological patterns in Rao were consistent among methods including different scales of intraspecific trait variability.Our results show empirically that decisions about where traits are sampled and how trait variability is included in functional diversity can drastically change the patterns observed and conclusions about ecological processes. We recommend sampling the traits of multiple individuals per species and capturing their intraspecific trait variability using probabilistic methods. We discuss how intraspecific trait variability can be reasonably estimated and included in functional diversity in the common circumstance where only limited trait data are available. [ABSTRACT FROM AUTHOR]

Interspecific competition, a dominant process structuring ecological communities, is influenced by species' phenotypic differences. Limiting similarity theory holds that species with similar traits should compete intensely ('trait‐similarity'). In contrast, competing theories including modern coexistence theory emphasize that species with traits conferring competitive advantages should outcompete others ('trait‐hierarchy'). Either or both of these mechanisms may drive competitive exclusion, but their relative importance and interacting effects are rarely studied. Here, we explore empirically whether trait‐similarity and trait‐hierarchy can explain fine‐scale spatial associations observed between invasive and native ant species in a tropical assemblage. We find that pairwise co‐occurrences between the invasive red imported fire ant Solenopsis invicta and 28 other species across relatively homogenous grasslands can be explained largely by an interaction of trait‐similarity and trait‐hierarchy in a single morphological trait, relative pronotum width. Specifically, higher trait‐hierarchy values are associated with negative co‐occurrences; however, these effects are counteracted when species are increasingly dissimilar in their trait ranges. These findings are consistent with the notion that limiting similarity and competitive hierarchies are interactive rather than discrete mechanisms driving competitive exclusion. [ABSTRACT FROM AUTHOR]