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49 results on '"Lisachov, Artem"'

1. Genome-wide sequence divergence of satellite DNA could underlie meiotic failure in male hybrids of bighead catfish and North African catfish (Clarias, Clariidae)

Author

Lisachov, Artem, Panthum, Thitipong, Dedukh, Dmitrij, Singchat, Worapong, Ahmad, Syed Farhan, Wattanadilokcahtkun, Pish, Thong, Thanyapat, Srikampa, Phanitada, Noito, Kantika, Rasoarahona, Ryan, Kraichak, Ekaphan, Muangmai, Narongrit, Chatchaiphan, Satid, Sriphairoj, Kednapat, Hatachote, Sittichai, Chaiyes, Aingorn, Jantasuriyarat, Chatchawan, Dokkaew, Sahabhop, Chailertlit, Visarut, Suksavate, Warong, Sonongbua, Jumaporn, Prasanpan, Jiraboon, Payungporn, Sunchai, Han, Kyudong, Antunes, Agostinho, Srisapoome, Prapansak, Koga, Akihiko, Duengkae, Prateep, Na-Nakorn, Uthairat, Matsuda, Yoichi, and Srikulnath, Kornsorn

Published
2024
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3. MicrosatNavigator: exploring nonrandom distribution and lineage-specificity of microsatellite repeat motifs on vertebrate sex chromosomes across 186 whole genomes

Author

Rasoarahona, Ryan, Wattanadilokchatkun, Pish, Panthum, Thitipong, Jaisamut, Kitipong, Lisachov, Artem, Thong, Thanyapat, Singchat, Worapong, Ahmad, Syed Farhan, Han, Kyudong, Kraichak, Ekaphan, Muangmai, Narongrit, Koga, Akihiko, Duengkae, Prateep, Antunes, Agostinho, and Srikulnath, Kornsorn

Published
2023
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5. Emerging importance of bighead catfish (Clarias macrocephalus) and north African catfish (C. gariepinus) as a bioresource and their genomic perspective

Author

Lisachov, Artem, Nguyen, Dung Ho My, Panthum, Thitipong, Ahmad, Syed Farhan, Singchat, Worapong, Ponjarat, Jatupong, Jaisamut, Kitipong, Srisapoome, Prapansak, Duengkae, Prateep, Hatachote, Sittichai, Sriphairoj, Kednapat, Muangmai, Narongrit, Unajak, Sasimanus, Han, Kyudong, Na-Nakorn, Uthairat, and Srikulnath, Kornsorn

Published
2023
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7. Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks

Author

Wattanadilokcahtkun, Pish, primary, Chalermwong, Piangjai, additional, Singchat, Worapong, additional, Wongloet, Wongsathit, additional, Chaiyes, Aingorn, additional, Tanglertpaibul, Nivit, additional, Budi, Trifan, additional, Panthum, Thitipong, additional, Ariyaraphong, Nattakan, additional, Ahmad, Syed Farhan, additional, Lisachov, Artem, additional, Muangmai, Narongrit, additional, Nunome, Mitsuo, additional, Han, Kyudong, additional, Matsuda, Yoichi, additional, Duengkae, Prateep, additional, and Srikulnath, Kornsorn, additional

Published
2023
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8. Overcoming taxonomic challenges in DNA barcoding for improvement of identification and preservation of clariid catfish species

Author

Chalermwong, Piangjai, primary, Panthum, Thitipong, additional, Wattanadilokcahtkun, Pish, additional, Ariyaraphong, Nattakan, additional, Thong, Thanyapat, additional, Srikampa, Phanitada, additional, Singchat, Worapong, additional, Ahmad, Syed Farhan, additional, Noito, Kantika, additional, Rasoarahona, Ryan, additional, Lisachov, Artem, additional, Ali, Hina, additional, Kraichak, Ekaphan, additional, Muangmai, Narongrit, additional, Chatchaiphan, Satid, additional, Sriphairoj, Kednapat, additional, Hatachote, Sittichai, additional, Chaiyes, Aingorn, additional, Jantasuriyarat, Chatchawan, additional, Chailertlit, Visarut, additional, Suksavate, Warong, additional, Sonongbua, Jumaporn, additional, Srimai, Witsanu, additional, Payungporn, Sunchai, additional, Han, Kyudong, additional, Antunes, Agostinho, additional, Srisapoome, Prapansak, additional, Koga, Akihiko, additional, Duengkae, Prateep, additional, Matsuda, Yoichi, additional, Na-Nakorn, Uthairat, additional, and Srikulnath, Kornsorn, additional

Published
2023
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10. Environmental and Socio–Cultural Factors Impacting the Unique Gene Pool Pattern of Mae Hong-Son Chicken

Author

Wongloet, Wongsathit, primary, Singchat, Worapong, additional, Chaiyes, Aingorn, additional, Ali, Hina, additional, Piangporntip, Surachai, additional, Ariyaraphong, Nattakan, additional, Budi, Trifan, additional, Thienpreecha, Worawit, additional, Wannakan, Wannapa, additional, Mungmee, Autchariyapron, additional, Jaisamut, Kittipong, additional, Thong, Thanyapat, additional, Panthum, Thitipong, additional, Ahmad, Syed Farhan, additional, Lisachov, Artem, additional, Suksavate, Warong, additional, Muangmai, Narongrit, additional, Chuenka, Rattanaphon, additional, Nunome, Mitsuo, additional, Chamchumroon, Wiyada, additional, Han, Kyudong, additional, Nuangmek, Aniroot, additional, Matsuda, Yoichi, additional, Duengkae, Prateep, additional, and Srikulnath, Kornsorn, additional

Published
2023
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12. Thai Local Chicken Breeds, Chee Fah and Fah Luang, Originated from Chinese Black-Boned Chicken with Introgression of Red Junglefowl and Domestic Chicken Breeds

Author

Budi, Trifan, primary, Singchat, Worapong, additional, Tanglertpaibul, Nivit, additional, Wongloet, Wongsathit, additional, Chaiyes, Aingorn, additional, Ariyaraphong, Nattakan, additional, Thienpreecha, Worawit, additional, Wannakan, Wannapa, additional, Mungmee, Autchariyapron, additional, Thong, Thanyapat, additional, Wattanadilokchatkun, Pish, additional, Panthum, Thitipong, additional, Ahmad, Syed Farhan, additional, Lisachov, Artem, additional, Muangmai, Narongrit, additional, Chuenka, Rattanaphon, additional, Prapattong, Pollavat, additional, Nunome, Mitsuo, additional, Chamchumroon, Wiyada, additional, Han, Kyudong, additional, Pornpipatsiri, Santi, additional, Supnithi, Thepchai, additional, Peng, Min-Sheng, additional, Han, Jian-Lin, additional, Matsuda, Yoichi, additional, Duengkae, Prateep, additional, Noinafai, Phuechphol, additional, and Srikulnath, Kornsorn, additional

Published
2023
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13. Identification of Iguania Ancestral Syntenic Blocks and Putative Sex Chromosomes in the Veiled Chameleon (Chamaeleo calyptratus, Chamaeleonidae, Iguania)

Author

Tishakova, Katerina V, Prokopov, Dmitry Yu, Davletshina, Guzel I, Rumyantsev, Alexander V, O'Brien, Patricia CM, Ferguson-Smith, Malcolm A, Giovannotti, Massimo, Lisachov, Artem P, Trifonov, Vladimir A, Prokopov, Dmitry Yu [0000-0001-8420-5203], Rumyantsev, Alexander V [0000-0001-6653-9293], Ferguson-Smith, Malcolm A [0000-0001-9372-1381], Giovannotti, Massimo [0000-0001-7622-3583], Lisachov, Artem P [0000-0003-3270-2894], Trifonov, Vladimir A [0000-0003-0454-8359], and Apollo - University of Cambridge Repository

Subjects
Male, Sex Chromosomes, Genome, reptilia, Organic Chemistry, Karyotype, karyotype evolution, Lizards, General Medicine, Synteny, Article, Catalysis, Chromosomes, Computer Science Applications, Inorganic Chemistry, repetitive elements, Evolution, Molecular, microchromosomes, chromosome fusion, Squamata, Animals, Physical and Theoretical Chemistry, Molecular Biology, Spectroscopy
Abstract

Peer reviewed: True, The veiled chameleon (Chamaeleo calyptratus) is a typical member of the family Chamaeleonidae and a promising object for comparative cytogenetics and genomics. The karyotype of C. calyptratus differs from the putative ancestral chameleon karyotype (2n = 36) due to a smaller chromosome number (2n = 24) resulting from multiple chromosome fusions. The homomorphic sex chromosomes of an XX/XY system were described recently using male-specific RADseq markers. However, the chromosomal pair carrying these markers was not identified. Here we obtained chromosome-specific DNA libraries of C. calyptratus by chromosome flow sorting that were assigned by FISH and sequenced. Sequence comparison with three squamate reptiles reference genomes revealed the ancestral syntenic regions in the C. calyptratus chromosomes. We demonstrated that reducing the chromosome number in the C. calyptratus karyotype occurred through two fusions between microchromosomes and four fusions between micro-and macrochromosomes. PCR-assisted mapping of a previously described Y-specific marker indicates that chromosome 5 may be the sex chromosome pair. One of the chromosome 5 conserved synteny blocks shares homology with the ancestral pleurodont X chromosome, assuming parallelism in the evolution of sex chromosomes from two basal Iguania clades (pleurodonts and acrodonts). The comparative chromosome map produced here can serve as the foundation for future genome assembly of chameleons and vertebrate-wide comparative genomic studies.

Published
2022

14. Should the Identification Guidelines for Siamese Crocodiles Be Revised? Differing Post-Occipital Scute Scale Numbers Show Phenotypic Variation Does Not Result from Hybridization with Saltwater Crocodiles

Author

Ariyaraphong, Nattakan, primary, Wongloet, Wongsathit, additional, Wattanadilokchatkun, Pish, additional, Panthum, Thitipong, additional, Singchat, Worapong, additional, Thong, Thanyapat, additional, Lisachov, Artem, additional, Ahmad, Syed Farhan, additional, Muangmai, Narongrit, additional, Han, Kyudong, additional, Duengkae, Prateep, additional, Temsiripong, Yosapong, additional, and Srikulnath, Kornsorn, additional

Published
2023
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15. Genetic Monitoring of the Last Captive Population of Greater Mouse-Deer on the Thai Mainland and Prediction of Habitat Suitability before Reintroduction

Author

Wongloet, Wongsathit, primary, Kongthong, Prach, additional, Chaiyes, Aingorn, additional, Singchat, Worapong, additional, Suksavate, Warong, additional, Ariyaraphong, Nattakan, additional, Panthum, Thitipong, additional, Lisachov, Artem, additional, Jaisamut, Kitipong, additional, Sonongbua, Jumaporn, additional, Budi, Trifan, additional, Wannakan, Wannapa, additional, Thienpreecha, Worawit, additional, Paansri, Paanwaris, additional, Ahmad, Syed Farhan, additional, Sribuarod, Kriangsak, additional, Prayoon, Umphornpimon, additional, Aramsirirujiwet, Pakpoom, additional, Chamchumroon, Wiyada, additional, Muangmai, Narongrit, additional, Duengkae, Prateep, additional, and Srikulnath, Kornsorn, additional

Published
2023
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18. Identification of Iguania Ancestral Syntenic Blocks and Putative Sex Chromosomes in the Veiled Chameleon (Chamaeleo calyptratus, Chamaeleonidae, Iguania)

Author

Tishakova, Katerina V., primary, Prokopov, Dmitry Yu., additional, Davletshina, Guzel I., additional, Rumyantsev, Alexander V., additional, O’Brien, Patricia C. M., additional, Ferguson-Smith, Malcolm A., additional, Giovannotti, Massimo, additional, Lisachov, Artem P., additional, and Trifonov, Vladimir A., additional

Published
2022
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23. Asian Elephant Evolutionary Relationships: New Perspectives from Mitochondrial D-Loop Haplotype Diversity.

Author

Srikulnath, Kornsorn, Ariyaraphong, Nattakan, Singchat, Worapong, Panthum, Thitipong, Lisachov, Artem, Ahmad, Syed Farhan, Han, Kyudong, Muangmai, Narongrit, and Duengkae, Prateep

Abstract

Mitochondrial displacement loop (mt D-loop) sequence analyses have greatly improved assessments of genetic diversity, structure, and population dynamics of endangered species threatened by climate change and habitat loss. Tracking population haplotypes of these species using mitochondrial-based markers has opened new avenues for conservation genomics and biodiversity research. Recent studies have used mt D-loop sequences to assess the genetic diversity of the largest land mammal in Asia, the Asian elephant (Elephas maximus), whose populations are rapidly declining. Here, we review haplotype data from mt D-loop sequencing studies and highlight previous population-scale hypotheses pertaining to the origin and diverse genetic profiles of Asian elephants. Retrieving haplotype information from elephant populations can substantially improve estimations of different parameters relevant to their conservation and allow introgression/hybridization dissection of genetic variation to shed light on ongoing evolutionary processes. [ABSTRACT FROM AUTHOR]

Published
2023
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28. Whole-chromosome fusions in the karyotype evolution of Sceloporus (Iguania, Reptilia) are more frequent in sex chromosomes than autosomes

Author

Lisachov, Artem P., primary, Tishakova, Katerina V., additional, Romanenko, Svetlana A., additional, Molodtseva, Anna S., additional, Prokopov, Dmitry Yu., additional, Pereira, Jorge C., additional, Ferguson-Smith, Malcolm A., additional, Borodin, Pavel M., additional, and Trifonov, Vladimir A., additional

Published
2021
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29. Amplified Fragments of an Autosome-Borne Gene Constitute a Significant Component of the W Sex Chromosome of Eremias velox (Reptilia, Lacertidae)

Author

Lisachov, Artem, primary, Andreyushkova, Daria, additional, Davletshina, Guzel, additional, Prokopov, Dmitry, additional, Romanenko, Svetlana, additional, Galkina, Svetlana, additional, Saifitdinova, Alsu, additional, Simonov, Evgeniy, additional, Borodin, Pavel, additional, and Trifonov, Vladimir, additional

Published
2021
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31. First record of ranavirus (Ranavirus sp.) in Siberia, Russia.

Author

Lisachov, Artem P., Lisachova, Lada S., and Simonov, Evgeniy

Subjects
PHYLOGENY, SIBERIAN salamander, POLYMERASE chain reaction, CLIMATE change, DOUBLE-strand DNA breaks
Abstract

Ranaviruses are a group of double-strand DNA viruses that infect fish, amphibians and reptiles. These viruses are responsible for mass fish and amphibian mortality events worldwide, both in the wild and at fish and amphibian farms. The number of detected epizootics has grown significantly in recent years. In Eastern Europe and Northern Asia, including Russia, very few ranavirus monitoring studies have been conducted, in contrast with Western Europe and America. In the present work, we used a qPCR assay to survey for the first time the amphibian populations of West Siberia (Russia) for the presence of ranaviruses. In total, we studied 252 tissue samples from six amphibian species, collected across West Siberia from the south to the Arctic regions. We report a single infected sample: a common toad (Bufo bufo) captured near Tyumen city. The phylogenetic analysis showed that the detected virus strain belongs to the CMTV lineage. This is only the second observation of Ranavirus in Russia. [ABSTRACT FROM AUTHOR]

Published
2022
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35. The mitogenome of Elaphe bimaculata (Reptilia: Colubridae) has never been published: a case with the complete mitochondrial genome of E. dione

Author

Simonov, Evgeniy, Lisachov, Artem, Oreshkova, Natalia, and Krutovsky, Konstantin

Subjects
lcsh:Zoology, lcsh:QL1-991
Abstract

The steppes ratsnake, Elaphe dione (Pallas, 1773), is widely distributed across Eurasia, but the systematics and phylogeography of this species remain poorly studied. Sequencing of the full mitochondrial genome of this species provides a reference for its further study. Here, we report the full mitochondrial genome of an E. dione specimen from Krasnoyarsk Krai (East Siberia, Russia). We found that it is highly similar to the previously reported mitochondrial genome of the sister species, E. bimaculata. Both species misidentification by the authors of E. bimaculata mitogenome and the introgressive hybridization between these taxa can possibly explain this observation., Acta Herpetologica, Vol 13 No 2 (2018)

Published
2018

36. Supplementary material 1 from: Lisachov AP, Galkina SA, Saifitdinova AF, Romanenko SA, Andreyushkova DA, Trifonov VA, Borodin PM (2019) Identification of sex chromosomes in Eremias velox (Lacertidae, Reptilia) using lampbrush chromosome analysis. Comparative Cytogenetics 13(2): 17-28. https://doi.org/10.3897/CompCytogen.v13i2.34116

Author

Lisachov, Artem P., primary, Galkina, Svetlana A., additional, Saifitdinova, Alsu F., additional, Romanenko, Svetlana A., additional, Andreyushkova, Daria A., additional, Trifonov, Vladimir A., additional, and Borodin, Pavel M., additional

Published
2019
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39. Genetic Content of the Neo-Sex Chromosomes in Ctenonotus and Norops (Squamata, Dactyloidae) and Degeneration of the Y Chromosome as Revealed by High-Throughput Sequencing of Individual Chromosomes

Author

Lisachov, Artem P., primary, Makunin, Alexey I., additional, Giovannotti, Massimo, additional, Pereira, Jorge C., additional, Druzhkova, Anna S., additional, Caputo Barucchi, Vincenzo, additional, Ferguson-Smith, Malcolm A., additional, and Trifonov, Vladimir A., additional

Published
2019
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47. RANA ARVALIS.

Author

DUJSEBAYEVA, TATJANA N., ARKHIPOV, EVGENY V., LYAPKOV, SERGEY M., and LISACHOV, ARTEM P.

Subjects
RANA, PREDATION, SCIENCE education, HYLIDAE, ZOOLOGY
Abstract

The article offers information of RANA ARVALIS (Moor Frog) is a common anuran species of northern Eurasia. Topics discussed include its range stretches from northwestern France, east to Siberia and Transbaikalia, and from the Middle Danube Lowland in Hungary north to Scandinavia and southern Yakutia; and Rana arvalis is also widely distributed in the northern half of Kazakhstan, and typically acquire a blue color during the breeding season.

Published
2021

48. Conservation of Major Satellite DNAs in Snake Heterochromatin

Author

Artem Lisachov, Alexander Rumyantsev, Dmitry Prokopov, Malcolm Ferguson-Smith, Vladimir Trifonov, Lisachov, Artem [0000-0003-3270-2894], Rumyantsev, Alexander [0000-0001-6653-9293], Prokopov, Dmitry [0000-0001-8420-5203], Ferguson-Smith, Malcolm [0000-0001-9372-1381], Trifonov, Vladimir [0000-0003-0454-8359], and Apollo - University of Cambridge Repository

Subjects
Serpentes, General Veterinary, centromere, repetitive DNA, sex chromosomes, Colubridae, Viperidae, Animal Science and Zoology
Abstract

Peer reviewed: True, Repetitive DNA sequences constitute a sizeable portion of animal genomes, and tandemly organized satellite DNAs are a major part of them. They are usually located in constitutive heterochromatin clusters in or near the centromeres or telomeres, and less frequently in the interstitial parts of chromosome arms. They are also frequently accumulated in sex chromosomes. The function of these clusters is to sustain the architecture of the chromosomes and the nucleus, and to regulate chromosome behavior during mitosis and meiosis. The study of satellite DNA diversity is important for understanding sex chromosome evolution, interspecific hybridization, and speciation. In this work, we identified four satellite DNA families in the genomes of two snakes from different families: Daboia russelii (Viperidae) and Pantherophis guttatus (Colubridae) and determine their chromosomal localization. We found that one family is localized in the centromeres of both species, whereas the others form clusters in certain chromosomes or subsets of chromosomes. BLAST with snake genome assemblies showed the conservation of such clusters, as well as a subtle presence of the satellites in the interspersed manner outside the clusters. Overall, our results show high conservation of satellite DNA in snakes and confirm the "library" model of satellite DNA evolution.

Published
2023
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49. Identification of sex chromosomes in Eremiasvelox (Lacertidae, Reptilia) using lampbrush chromosome analysis.

Author

Lisachov AP, Galkina SA, Saifitdinova AF, Svetlana A Romanenko, Andreyushkova DA, Trifonov VA, and Borodin PM

Abstract

Reptiles are good objects for studying the evolution of sex determination, since they have different sex determination systems in different lineages. Lacertid lizards have been long-known for possessing ZZ/ZW type sex chromosomes. However, due to morphological uniformity of lacertid chromosomes, the Z chromosome has been only putatively cytologically identified. We used lampbrush chromosome (LBC) analysis and FISH with a W-specific probe in Eremiasvelox (Pallas, 1771) to unequivocally identify the ZW bivalent and investigate its meiotic behavior. The heterochromatic W chromosome is decondensed at the lampbrush stage, indicating active transcription, contrast with the highly condensed condition of the lampbrush W chromosomes in birds. We identified the Z chromosome by its chiasmatic association with the W chromosome as chromosome XIII of the 19 chromosomes in the LBC karyotype. Our findings agree with previous genetic and genomic studies, which suggested that the lacertid Z chromosome should be one of the smaller macrochromosomes.

Published
2019
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